Multiple sequence alignment - TraesCS4D01G288000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G288000 chr4D 100.000 4178 0 0 1 4178 459315443 459319620 0.000000e+00 7716.0
1 TraesCS4D01G288000 chr4A 95.233 3063 116 18 666 3708 9455571 9452519 0.000000e+00 4820.0
2 TraesCS4D01G288000 chr4A 88.142 253 11 4 3872 4105 9452349 9452097 2.460000e-72 283.0
3 TraesCS4D01G288000 chr4A 94.413 179 8 1 3726 3904 9452528 9452352 1.480000e-69 274.0
4 TraesCS4D01G288000 chr4A 75.648 193 38 8 42 227 196787208 196787398 2.070000e-13 87.9
5 TraesCS4D01G288000 chr4A 85.057 87 10 3 305 388 685315319 685315233 7.440000e-13 86.1
6 TraesCS4D01G288000 chr4B 94.928 2918 112 16 630 3540 574057778 574060666 0.000000e+00 4536.0
7 TraesCS4D01G288000 chr4B 94.313 211 9 3 3732 3940 574060782 574060991 1.870000e-83 320.0
8 TraesCS4D01G288000 chr4B 87.218 266 20 5 3923 4178 574063142 574063403 1.470000e-74 291.0
9 TraesCS4D01G288000 chr1B 76.395 233 37 14 40 261 637395458 637395233 4.420000e-20 110.0
10 TraesCS4D01G288000 chr1B 85.556 90 11 2 298 386 637395497 637395409 4.450000e-15 93.5
11 TraesCS4D01G288000 chr1A 87.778 90 9 2 298 386 575655624 575655536 2.050000e-18 104.0
12 TraesCS4D01G288000 chr5B 77.528 178 32 7 219 388 89761250 89761427 2.660000e-17 100.0
13 TraesCS4D01G288000 chr7D 76.720 189 35 8 203 386 428767132 428767316 3.440000e-16 97.1
14 TraesCS4D01G288000 chr7D 76.647 167 35 4 107 269 135128931 135128765 5.750000e-14 89.8
15 TraesCS4D01G288000 chr7D 86.420 81 8 3 40 120 242000834 242000757 7.440000e-13 86.1
16 TraesCS4D01G288000 chr2B 90.667 75 4 3 307 378 773471084 773471158 3.440000e-16 97.1
17 TraesCS4D01G288000 chr2B 87.654 81 6 3 40 120 24701652 24701576 1.600000e-14 91.6
18 TraesCS4D01G288000 chr2B 84.211 95 11 3 298 388 193473070 193472976 5.750000e-14 89.8
19 TraesCS4D01G288000 chr2D 85.393 89 9 4 40 127 609984222 609984137 5.750000e-14 89.8
20 TraesCS4D01G288000 chr2D 78.523 149 20 9 40 185 633700550 633700689 2.070000e-13 87.9
21 TraesCS4D01G288000 chr2D 83.146 89 11 3 40 127 609913463 609913378 1.250000e-10 78.7
22 TraesCS4D01G288000 chr3D 77.632 152 22 7 40 181 566607669 566607520 9.630000e-12 82.4
23 TraesCS4D01G288000 chr2A 82.796 93 14 2 296 387 619609490 619609581 9.630000e-12 82.4
24 TraesCS4D01G288000 chr3B 82.796 93 13 3 297 386 81303936 81303844 3.460000e-11 80.5
25 TraesCS4D01G288000 chr5D 79.091 110 17 5 154 257 531401068 531400959 2.080000e-08 71.3
26 TraesCS4D01G288000 chr1D 75.155 161 31 7 37 192 64119380 64119536 2.700000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G288000 chr4D 459315443 459319620 4177 False 7716.000000 7716 100.000 1 4178 1 chr4D.!!$F1 4177
1 TraesCS4D01G288000 chr4A 9452097 9455571 3474 True 1792.333333 4820 92.596 666 4105 3 chr4A.!!$R2 3439
2 TraesCS4D01G288000 chr4B 574057778 574063403 5625 False 1715.666667 4536 92.153 630 4178 3 chr4B.!!$F1 3548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
933 945 0.031994 CAAAACCGACCAAAGCCCTG 59.968 55.000 0.0 0.0 0.00 4.45 F
934 946 0.106419 AAAACCGACCAAAGCCCTGA 60.106 50.000 0.0 0.0 0.00 3.86 F
939 959 1.073897 GACCAAAGCCCTGACTGCT 59.926 57.895 0.0 0.0 41.89 4.24 F
2459 2479 1.144708 TCTGGGTTGCTTTCACCATGA 59.855 47.619 0.0 0.0 31.62 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2063 2083 0.888619 TAGTGTCAACTCTCCGGCAG 59.111 55.000 0.00 0.0 37.88 4.85 R
2807 2828 1.042003 TTTTGCCAGTTGCTCAGCCA 61.042 50.000 0.00 0.0 42.00 4.75 R
2811 2832 3.573538 ACATACATTTTGCCAGTTGCTCA 59.426 39.130 0.00 0.0 42.00 4.26 R
4153 6406 1.153745 CTCACTACCACCTGCGCTC 60.154 63.158 9.73 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.674933 GTGTTTTCTACTTCCACAAGAGG 57.325 43.478 0.00 0.00 33.34 3.69
23 24 4.023963 GTGTTTTCTACTTCCACAAGAGGC 60.024 45.833 0.00 0.00 33.34 4.70
24 25 4.134563 GTTTTCTACTTCCACAAGAGGCA 58.865 43.478 0.00 0.00 33.34 4.75
25 26 4.640771 TTTCTACTTCCACAAGAGGCAT 57.359 40.909 0.00 0.00 33.34 4.40
26 27 5.755409 TTTCTACTTCCACAAGAGGCATA 57.245 39.130 0.00 0.00 33.34 3.14
27 28 5.344743 TTCTACTTCCACAAGAGGCATAG 57.655 43.478 0.00 0.00 33.34 2.23
28 29 4.610333 TCTACTTCCACAAGAGGCATAGA 58.390 43.478 0.00 0.00 33.34 1.98
29 30 5.211973 TCTACTTCCACAAGAGGCATAGAT 58.788 41.667 0.00 0.00 33.34 1.98
30 31 4.851639 ACTTCCACAAGAGGCATAGATT 57.148 40.909 0.00 0.00 33.34 2.40
31 32 5.184892 ACTTCCACAAGAGGCATAGATTT 57.815 39.130 0.00 0.00 33.34 2.17
32 33 6.313519 ACTTCCACAAGAGGCATAGATTTA 57.686 37.500 0.00 0.00 33.34 1.40
33 34 6.116126 ACTTCCACAAGAGGCATAGATTTAC 58.884 40.000 0.00 0.00 33.34 2.01
34 35 5.957771 TCCACAAGAGGCATAGATTTACT 57.042 39.130 0.00 0.00 0.00 2.24
35 36 6.313519 TCCACAAGAGGCATAGATTTACTT 57.686 37.500 0.00 0.00 0.00 2.24
36 37 6.115446 TCCACAAGAGGCATAGATTTACTTG 58.885 40.000 0.00 0.00 39.02 3.16
37 38 5.220931 CCACAAGAGGCATAGATTTACTTGC 60.221 44.000 0.00 0.00 37.38 4.01
38 39 4.572389 ACAAGAGGCATAGATTTACTTGCG 59.428 41.667 0.00 0.00 37.38 4.85
39 40 3.134458 AGAGGCATAGATTTACTTGCGC 58.866 45.455 0.00 0.00 35.28 6.09
40 41 1.867233 AGGCATAGATTTACTTGCGCG 59.133 47.619 0.00 0.00 35.28 6.86
41 42 1.069906 GGCATAGATTTACTTGCGCGG 60.070 52.381 8.83 0.00 35.28 6.46
42 43 1.864711 GCATAGATTTACTTGCGCGGA 59.135 47.619 8.83 0.00 0.00 5.54
43 44 2.480419 GCATAGATTTACTTGCGCGGAT 59.520 45.455 8.83 0.00 0.00 4.18
44 45 3.058914 GCATAGATTTACTTGCGCGGATT 60.059 43.478 8.83 0.00 0.00 3.01
45 46 4.554723 GCATAGATTTACTTGCGCGGATTT 60.555 41.667 8.83 0.00 0.00 2.17
46 47 3.405170 AGATTTACTTGCGCGGATTTG 57.595 42.857 8.83 0.73 0.00 2.32
47 48 1.846175 GATTTACTTGCGCGGATTTGC 59.154 47.619 8.83 0.00 0.00 3.68
48 49 0.878416 TTTACTTGCGCGGATTTGCT 59.122 45.000 8.83 0.00 0.00 3.91
49 50 0.878416 TTACTTGCGCGGATTTGCTT 59.122 45.000 8.83 0.00 0.00 3.91
50 51 0.446222 TACTTGCGCGGATTTGCTTC 59.554 50.000 8.83 0.00 0.00 3.86
51 52 1.514873 CTTGCGCGGATTTGCTTCC 60.515 57.895 8.83 0.00 0.00 3.46
57 58 4.201951 GGATTTGCTTCCGCGAGA 57.798 55.556 8.23 0.00 39.65 4.04
58 59 2.009888 GGATTTGCTTCCGCGAGAG 58.990 57.895 8.23 5.93 39.65 3.20
59 60 1.432270 GGATTTGCTTCCGCGAGAGG 61.432 60.000 8.23 4.88 39.65 3.69
63 64 4.742201 GCTTCCGCGAGAGGCACA 62.742 66.667 20.89 0.00 46.54 4.57
64 65 2.507992 CTTCCGCGAGAGGCACAG 60.508 66.667 8.23 0.00 43.84 3.66
65 66 3.288308 CTTCCGCGAGAGGCACAGT 62.288 63.158 8.23 0.00 43.84 3.55
66 67 3.282745 TTCCGCGAGAGGCACAGTC 62.283 63.158 8.23 0.00 43.84 3.51
67 68 4.056125 CCGCGAGAGGCACAGTCA 62.056 66.667 8.23 0.00 43.84 3.41
68 69 2.182791 CGCGAGAGGCACAGTCAT 59.817 61.111 0.00 0.00 43.84 3.06
69 70 2.163390 CGCGAGAGGCACAGTCATG 61.163 63.158 0.00 0.00 43.84 3.07
70 71 2.459442 GCGAGAGGCACAGTCATGC 61.459 63.158 0.00 0.00 45.34 4.06
76 77 3.791539 GCACAGTCATGCCTCTCG 58.208 61.111 0.00 0.00 39.86 4.04
77 78 1.216444 GCACAGTCATGCCTCTCGA 59.784 57.895 0.00 0.00 39.86 4.04
78 79 0.390340 GCACAGTCATGCCTCTCGAA 60.390 55.000 0.00 0.00 39.86 3.71
79 80 1.941209 GCACAGTCATGCCTCTCGAAA 60.941 52.381 0.00 0.00 39.86 3.46
80 81 2.416747 CACAGTCATGCCTCTCGAAAA 58.583 47.619 0.00 0.00 0.00 2.29
81 82 2.414481 CACAGTCATGCCTCTCGAAAAG 59.586 50.000 0.00 0.00 0.00 2.27
82 83 2.300152 ACAGTCATGCCTCTCGAAAAGA 59.700 45.455 0.00 0.00 0.00 2.52
83 84 3.244215 ACAGTCATGCCTCTCGAAAAGAA 60.244 43.478 0.00 0.00 32.23 2.52
84 85 3.748048 CAGTCATGCCTCTCGAAAAGAAA 59.252 43.478 0.00 0.00 32.23 2.52
85 86 4.214119 CAGTCATGCCTCTCGAAAAGAAAA 59.786 41.667 0.00 0.00 32.23 2.29
86 87 4.453819 AGTCATGCCTCTCGAAAAGAAAAG 59.546 41.667 0.00 0.00 32.23 2.27
87 88 4.452455 GTCATGCCTCTCGAAAAGAAAAGA 59.548 41.667 0.00 0.00 32.23 2.52
88 89 5.049405 GTCATGCCTCTCGAAAAGAAAAGAA 60.049 40.000 0.00 0.00 32.23 2.52
89 90 5.530915 TCATGCCTCTCGAAAAGAAAAGAAA 59.469 36.000 0.00 0.00 32.23 2.52
90 91 5.828299 TGCCTCTCGAAAAGAAAAGAAAA 57.172 34.783 0.00 0.00 32.23 2.29
91 92 6.202516 TGCCTCTCGAAAAGAAAAGAAAAA 57.797 33.333 0.00 0.00 32.23 1.94
92 93 6.033966 TGCCTCTCGAAAAGAAAAGAAAAAC 58.966 36.000 0.00 0.00 32.23 2.43
93 94 6.033966 GCCTCTCGAAAAGAAAAGAAAAACA 58.966 36.000 0.00 0.00 32.23 2.83
94 95 6.020599 GCCTCTCGAAAAGAAAAGAAAAACAC 60.021 38.462 0.00 0.00 32.23 3.32
95 96 6.472486 CCTCTCGAAAAGAAAAGAAAAACACC 59.528 38.462 0.00 0.00 32.23 4.16
96 97 7.153217 TCTCGAAAAGAAAAGAAAAACACCT 57.847 32.000 0.00 0.00 0.00 4.00
97 98 7.599171 TCTCGAAAAGAAAAGAAAAACACCTT 58.401 30.769 0.00 0.00 0.00 3.50
98 99 8.085909 TCTCGAAAAGAAAAGAAAAACACCTTT 58.914 29.630 0.00 0.00 34.39 3.11
99 100 8.596271 TCGAAAAGAAAAGAAAAACACCTTTT 57.404 26.923 0.00 0.00 43.04 2.27
100 101 9.047371 TCGAAAAGAAAAGAAAAACACCTTTTT 57.953 25.926 0.00 0.00 41.17 1.94
111 112 6.403333 AAAACACCTTTTTCTTTCTTTCGC 57.597 33.333 0.00 0.00 0.00 4.70
112 113 3.691498 ACACCTTTTTCTTTCTTTCGCG 58.309 40.909 0.00 0.00 0.00 5.87
113 114 3.375922 ACACCTTTTTCTTTCTTTCGCGA 59.624 39.130 3.71 3.71 0.00 5.87
114 115 3.968724 CACCTTTTTCTTTCTTTCGCGAG 59.031 43.478 9.59 0.00 0.00 5.03
115 116 3.875134 ACCTTTTTCTTTCTTTCGCGAGA 59.125 39.130 9.59 3.35 39.20 4.04
116 117 4.024809 ACCTTTTTCTTTCTTTCGCGAGAG 60.025 41.667 19.89 19.89 43.69 3.20
117 118 4.458708 CTTTTTCTTTCTTTCGCGAGAGG 58.541 43.478 24.53 10.46 43.69 3.69
118 119 1.429463 TTCTTTCTTTCGCGAGAGGC 58.571 50.000 24.53 0.00 43.69 4.70
119 120 0.317160 TCTTTCTTTCGCGAGAGGCA 59.683 50.000 24.53 10.58 43.84 4.75
120 121 0.440371 CTTTCTTTCGCGAGAGGCAC 59.560 55.000 24.53 0.00 43.84 5.01
121 122 0.249699 TTTCTTTCGCGAGAGGCACA 60.250 50.000 24.53 4.30 43.84 4.57
122 123 0.037326 TTCTTTCGCGAGAGGCACAT 60.037 50.000 24.53 0.00 43.84 3.21
123 124 0.815095 TCTTTCGCGAGAGGCACATA 59.185 50.000 24.53 3.18 43.84 2.29
124 125 1.409064 TCTTTCGCGAGAGGCACATAT 59.591 47.619 24.53 0.00 43.84 1.78
125 126 2.159099 TCTTTCGCGAGAGGCACATATT 60.159 45.455 24.53 0.00 43.84 1.28
126 127 2.309528 TTCGCGAGAGGCACATATTT 57.690 45.000 9.59 0.00 43.84 1.40
127 128 3.446310 TTCGCGAGAGGCACATATTTA 57.554 42.857 9.59 0.00 43.84 1.40
128 129 3.660501 TCGCGAGAGGCACATATTTAT 57.339 42.857 3.71 0.00 43.84 1.40
129 130 3.990092 TCGCGAGAGGCACATATTTATT 58.010 40.909 3.71 0.00 43.84 1.40
130 131 4.377021 TCGCGAGAGGCACATATTTATTT 58.623 39.130 3.71 0.00 43.84 1.40
131 132 4.814234 TCGCGAGAGGCACATATTTATTTT 59.186 37.500 3.71 0.00 43.84 1.82
132 133 5.986741 TCGCGAGAGGCACATATTTATTTTA 59.013 36.000 3.71 0.00 43.84 1.52
133 134 6.649141 TCGCGAGAGGCACATATTTATTTTAT 59.351 34.615 3.71 0.00 43.84 1.40
134 135 7.172532 TCGCGAGAGGCACATATTTATTTTATT 59.827 33.333 3.71 0.00 43.84 1.40
135 136 7.803189 CGCGAGAGGCACATATTTATTTTATTT 59.197 33.333 0.00 0.00 43.84 1.40
136 137 8.905702 GCGAGAGGCACATATTTATTTTATTTG 58.094 33.333 0.00 0.00 42.87 2.32
141 142 9.030301 AGGCACATATTTATTTTATTTGAACGC 57.970 29.630 0.00 0.00 0.00 4.84
142 143 8.812329 GGCACATATTTATTTTATTTGAACGCA 58.188 29.630 0.00 0.00 0.00 5.24
143 144 9.618410 GCACATATTTATTTTATTTGAACGCAC 57.382 29.630 0.00 0.00 0.00 5.34
152 153 7.643528 TTTTATTTGAACGCACATATTTGCA 57.356 28.000 13.94 0.00 43.15 4.08
153 154 7.824704 TTTATTTGAACGCACATATTTGCAT 57.175 28.000 13.94 2.04 43.15 3.96
154 155 7.824704 TTATTTGAACGCACATATTTGCATT 57.175 28.000 13.94 4.72 43.15 3.56
155 156 6.724694 ATTTGAACGCACATATTTGCATTT 57.275 29.167 13.94 6.10 43.15 2.32
156 157 5.512573 TTGAACGCACATATTTGCATTTG 57.487 34.783 13.94 0.39 43.15 2.32
157 158 3.367327 TGAACGCACATATTTGCATTTGC 59.633 39.130 13.94 0.00 43.15 3.68
158 159 2.614401 CGCACATATTTGCATTTGCG 57.386 45.000 13.94 4.40 45.73 4.85
160 161 3.829066 GCACATATTTGCATTTGCGAG 57.171 42.857 8.98 0.00 45.83 5.03
161 162 3.437428 GCACATATTTGCATTTGCGAGA 58.563 40.909 8.98 0.00 45.83 4.04
162 163 3.484649 GCACATATTTGCATTTGCGAGAG 59.515 43.478 8.98 0.00 45.83 3.20
163 164 4.039703 CACATATTTGCATTTGCGAGAGG 58.960 43.478 0.00 0.00 45.83 3.69
164 165 2.849880 TATTTGCATTTGCGAGAGGC 57.150 45.000 0.00 0.00 45.83 4.70
174 175 3.833706 GCGAGAGGCACAATTATGC 57.166 52.632 0.00 0.00 45.34 3.14
184 185 4.355543 GCACAATTATGCCTCTCGAAAA 57.644 40.909 0.00 0.00 39.86 2.29
185 186 4.346129 GCACAATTATGCCTCTCGAAAAG 58.654 43.478 0.00 0.00 39.86 2.27
186 187 4.731773 GCACAATTATGCCTCTCGAAAAGG 60.732 45.833 0.00 8.80 39.86 3.11
187 188 3.947834 ACAATTATGCCTCTCGAAAAGGG 59.052 43.478 13.81 2.68 34.26 3.95
188 189 4.199310 CAATTATGCCTCTCGAAAAGGGA 58.801 43.478 13.81 11.84 38.73 4.20
189 190 3.992943 TTATGCCTCTCGAAAAGGGAA 57.007 42.857 11.07 0.51 37.81 3.97
190 191 2.879103 ATGCCTCTCGAAAAGGGAAA 57.121 45.000 11.07 0.00 37.81 3.13
191 192 2.649531 TGCCTCTCGAAAAGGGAAAA 57.350 45.000 13.81 0.00 34.26 2.29
192 193 2.504367 TGCCTCTCGAAAAGGGAAAAG 58.496 47.619 13.81 0.00 34.26 2.27
193 194 1.200252 GCCTCTCGAAAAGGGAAAAGC 59.800 52.381 13.81 0.00 34.26 3.51
194 195 2.504367 CCTCTCGAAAAGGGAAAAGCA 58.496 47.619 5.74 0.00 0.00 3.91
195 196 2.226674 CCTCTCGAAAAGGGAAAAGCAC 59.773 50.000 5.74 0.00 0.00 4.40
196 197 2.878406 CTCTCGAAAAGGGAAAAGCACA 59.122 45.455 0.00 0.00 0.00 4.57
197 198 3.486383 TCTCGAAAAGGGAAAAGCACAT 58.514 40.909 0.00 0.00 0.00 3.21
198 199 3.888930 TCTCGAAAAGGGAAAAGCACATT 59.111 39.130 0.00 0.00 0.00 2.71
199 200 4.340950 TCTCGAAAAGGGAAAAGCACATTT 59.659 37.500 0.00 0.00 0.00 2.32
200 201 5.017294 TCGAAAAGGGAAAAGCACATTTT 57.983 34.783 0.00 0.00 43.88 1.82
201 202 5.423886 TCGAAAAGGGAAAAGCACATTTTT 58.576 33.333 0.00 0.00 41.24 1.94
227 228 9.745018 TTTCCATGAGAGACAAGATTTATTTCT 57.255 29.630 0.00 0.00 0.00 2.52
228 229 8.954950 TCCATGAGAGACAAGATTTATTTCTC 57.045 34.615 0.00 0.00 34.14 2.87
229 230 7.708322 TCCATGAGAGACAAGATTTATTTCTCG 59.292 37.037 0.00 0.00 38.20 4.04
230 231 7.493971 CCATGAGAGACAAGATTTATTTCTCGT 59.506 37.037 0.00 0.00 38.20 4.18
231 232 7.818493 TGAGAGACAAGATTTATTTCTCGTG 57.182 36.000 0.00 0.00 38.20 4.35
232 233 6.813649 TGAGAGACAAGATTTATTTCTCGTGG 59.186 38.462 0.00 0.00 38.20 4.94
233 234 6.109359 AGAGACAAGATTTATTTCTCGTGGG 58.891 40.000 0.00 0.00 38.20 4.61
234 235 5.186198 AGACAAGATTTATTTCTCGTGGGG 58.814 41.667 0.00 0.00 0.00 4.96
235 236 4.918588 ACAAGATTTATTTCTCGTGGGGT 58.081 39.130 0.00 0.00 0.00 4.95
236 237 4.941873 ACAAGATTTATTTCTCGTGGGGTC 59.058 41.667 0.00 0.00 0.00 4.46
237 238 4.837093 AGATTTATTTCTCGTGGGGTCA 57.163 40.909 0.00 0.00 0.00 4.02
238 239 4.514401 AGATTTATTTCTCGTGGGGTCAC 58.486 43.478 0.00 0.00 40.36 3.67
246 247 3.274067 GTGGGGTCACGGATTTGC 58.726 61.111 0.00 0.00 33.87 3.68
247 248 1.303317 GTGGGGTCACGGATTTGCT 60.303 57.895 0.00 0.00 33.87 3.91
248 249 0.893727 GTGGGGTCACGGATTTGCTT 60.894 55.000 0.00 0.00 33.87 3.91
249 250 0.608035 TGGGGTCACGGATTTGCTTC 60.608 55.000 0.00 0.00 0.00 3.86
250 251 1.313091 GGGGTCACGGATTTGCTTCC 61.313 60.000 0.00 0.00 0.00 3.46
256 257 4.201951 GGATTTGCTTCCGCGAGA 57.798 55.556 8.23 0.00 39.65 4.04
257 258 2.009888 GGATTTGCTTCCGCGAGAG 58.990 57.895 8.23 5.93 39.65 3.20
258 259 1.432270 GGATTTGCTTCCGCGAGAGG 61.432 60.000 8.23 4.88 39.65 3.69
262 263 2.417516 GCTTCCGCGAGAGGCATA 59.582 61.111 20.89 0.00 46.54 3.14
263 264 1.005630 GCTTCCGCGAGAGGCATAT 60.006 57.895 20.89 0.00 46.54 1.78
264 265 0.601311 GCTTCCGCGAGAGGCATATT 60.601 55.000 20.89 0.00 46.54 1.28
265 266 1.423395 CTTCCGCGAGAGGCATATTC 58.577 55.000 8.23 0.00 43.84 1.75
266 267 0.318699 TTCCGCGAGAGGCATATTCG 60.319 55.000 8.23 0.91 43.84 3.34
267 268 1.007271 CCGCGAGAGGCATATTCGT 60.007 57.895 8.23 0.00 43.84 3.85
268 269 1.278172 CCGCGAGAGGCATATTCGTG 61.278 60.000 8.23 10.27 43.84 4.35
269 270 0.595053 CGCGAGAGGCATATTCGTGT 60.595 55.000 0.00 0.00 43.84 4.49
270 271 1.132588 GCGAGAGGCATATTCGTGTC 58.867 55.000 6.62 0.00 42.87 3.67
271 272 1.269309 GCGAGAGGCATATTCGTGTCT 60.269 52.381 6.62 0.00 42.87 3.41
276 277 4.314740 GAGGCATATTCGTGTCTCTTCT 57.685 45.455 1.53 0.00 45.17 2.85
277 278 5.440234 GAGGCATATTCGTGTCTCTTCTA 57.560 43.478 1.53 0.00 45.17 2.10
278 279 5.189659 AGGCATATTCGTGTCTCTTCTAC 57.810 43.478 0.00 0.00 24.23 2.59
279 280 3.975670 GGCATATTCGTGTCTCTTCTACG 59.024 47.826 0.00 0.00 39.04 3.51
280 281 4.261072 GGCATATTCGTGTCTCTTCTACGA 60.261 45.833 0.00 0.00 44.08 3.43
281 282 4.907010 GCATATTCGTGTCTCTTCTACGAG 59.093 45.833 0.00 0.00 45.95 4.18
282 283 5.277393 GCATATTCGTGTCTCTTCTACGAGA 60.277 44.000 0.00 0.00 45.95 4.04
283 284 4.868450 ATTCGTGTCTCTTCTACGAGAG 57.132 45.455 0.00 0.00 45.95 3.20
284 285 2.619147 TCGTGTCTCTTCTACGAGAGG 58.381 52.381 0.00 0.00 42.73 3.69
285 286 1.062880 CGTGTCTCTTCTACGAGAGGC 59.937 57.143 0.00 0.00 46.20 4.70
287 288 2.836479 GTCTCTTCTACGAGAGGCAC 57.164 55.000 1.90 0.00 45.51 5.01
288 289 2.085320 GTCTCTTCTACGAGAGGCACA 58.915 52.381 1.90 0.00 45.51 4.57
289 290 2.685897 GTCTCTTCTACGAGAGGCACAT 59.314 50.000 1.90 0.00 45.51 3.21
290 291 3.129638 GTCTCTTCTACGAGAGGCACATT 59.870 47.826 1.90 0.00 45.51 2.71
291 292 3.378742 TCTCTTCTACGAGAGGCACATTC 59.621 47.826 0.00 0.00 42.73 2.67
292 293 2.097629 TCTTCTACGAGAGGCACATTCG 59.902 50.000 0.00 0.00 41.08 3.34
294 295 1.132453 TCTACGAGAGGCACATTCGTG 59.868 52.381 12.88 0.00 45.94 4.35
303 304 2.081526 CACATTCGTGCCTCTTCCG 58.918 57.895 0.00 0.00 36.06 4.30
304 305 0.670546 CACATTCGTGCCTCTTCCGT 60.671 55.000 0.00 0.00 36.06 4.69
305 306 0.670546 ACATTCGTGCCTCTTCCGTG 60.671 55.000 0.00 0.00 0.00 4.94
306 307 0.389817 CATTCGTGCCTCTTCCGTGA 60.390 55.000 0.00 0.00 0.00 4.35
307 308 0.108615 ATTCGTGCCTCTTCCGTGAG 60.109 55.000 0.00 0.00 0.00 3.51
308 309 1.176619 TTCGTGCCTCTTCCGTGAGA 61.177 55.000 0.00 0.00 36.23 3.27
309 310 1.153939 CGTGCCTCTTCCGTGAGAG 60.154 63.158 5.54 5.54 42.26 3.20
313 314 4.900154 CTCTTCCGTGAGAGGCAC 57.100 61.111 4.77 0.00 44.21 5.01
325 326 5.948992 GTGAGAGGCACAAATTTACTTCT 57.051 39.130 0.00 0.00 46.91 2.85
326 327 5.932661 GTGAGAGGCACAAATTTACTTCTC 58.067 41.667 14.92 14.92 46.91 2.87
327 328 4.690748 TGAGAGGCACAAATTTACTTCTCG 59.309 41.667 15.92 0.00 0.00 4.04
328 329 4.642429 AGAGGCACAAATTTACTTCTCGT 58.358 39.130 0.00 0.00 0.00 4.18
329 330 4.452455 AGAGGCACAAATTTACTTCTCGTG 59.548 41.667 0.00 0.00 0.00 4.35
330 331 3.502211 AGGCACAAATTTACTTCTCGTGG 59.498 43.478 0.00 0.00 0.00 4.94
331 332 3.500680 GGCACAAATTTACTTCTCGTGGA 59.499 43.478 0.00 0.00 0.00 4.02
332 333 4.378459 GGCACAAATTTACTTCTCGTGGAG 60.378 45.833 0.00 0.00 0.00 3.86
333 334 4.378459 GCACAAATTTACTTCTCGTGGAGG 60.378 45.833 0.00 0.00 0.00 4.30
334 335 4.755123 CACAAATTTACTTCTCGTGGAGGT 59.245 41.667 0.00 0.07 37.94 3.85
335 336 5.929992 CACAAATTTACTTCTCGTGGAGGTA 59.070 40.000 0.00 0.00 35.78 3.08
336 337 6.425721 CACAAATTTACTTCTCGTGGAGGTAA 59.574 38.462 10.02 10.02 42.24 2.85
337 338 6.649557 ACAAATTTACTTCTCGTGGAGGTAAG 59.350 38.462 12.36 0.00 43.81 2.34
338 339 6.600882 AATTTACTTCTCGTGGAGGTAAGA 57.399 37.500 12.36 7.54 43.81 2.10
339 340 6.793505 ATTTACTTCTCGTGGAGGTAAGAT 57.206 37.500 12.36 8.76 43.81 2.40
340 341 6.600882 TTTACTTCTCGTGGAGGTAAGATT 57.399 37.500 12.36 0.00 43.81 2.40
341 342 6.600882 TTACTTCTCGTGGAGGTAAGATTT 57.399 37.500 10.02 0.00 40.16 2.17
342 343 4.822026 ACTTCTCGTGGAGGTAAGATTTG 58.178 43.478 0.00 0.00 32.29 2.32
343 344 4.527038 ACTTCTCGTGGAGGTAAGATTTGA 59.473 41.667 0.00 0.00 32.29 2.69
344 345 5.187967 ACTTCTCGTGGAGGTAAGATTTGAT 59.812 40.000 0.00 0.00 32.29 2.57
345 346 5.677319 TCTCGTGGAGGTAAGATTTGATT 57.323 39.130 0.00 0.00 0.00 2.57
346 347 5.661458 TCTCGTGGAGGTAAGATTTGATTC 58.339 41.667 0.00 0.00 0.00 2.52
347 348 4.766375 TCGTGGAGGTAAGATTTGATTCC 58.234 43.478 0.00 0.00 0.00 3.01
348 349 3.555956 CGTGGAGGTAAGATTTGATTCCG 59.444 47.826 0.00 0.00 0.00 4.30
349 350 3.312697 GTGGAGGTAAGATTTGATTCCGC 59.687 47.826 0.00 0.00 0.00 5.54
350 351 2.544267 GGAGGTAAGATTTGATTCCGCG 59.456 50.000 0.00 0.00 0.00 6.46
351 352 3.454375 GAGGTAAGATTTGATTCCGCGA 58.546 45.455 8.23 0.00 0.00 5.87
352 353 3.458189 AGGTAAGATTTGATTCCGCGAG 58.542 45.455 8.23 0.00 0.00 5.03
353 354 3.132289 AGGTAAGATTTGATTCCGCGAGA 59.868 43.478 8.23 0.00 0.00 4.04
354 355 3.491267 GGTAAGATTTGATTCCGCGAGAG 59.509 47.826 8.23 0.00 0.00 3.20
355 356 2.969628 AGATTTGATTCCGCGAGAGT 57.030 45.000 8.23 0.00 0.00 3.24
356 357 2.815478 AGATTTGATTCCGCGAGAGTC 58.185 47.619 8.23 10.35 0.00 3.36
357 358 2.166459 AGATTTGATTCCGCGAGAGTCA 59.834 45.455 8.23 13.00 39.29 3.41
358 359 2.672961 TTTGATTCCGCGAGAGTCAT 57.327 45.000 18.31 2.84 40.55 3.06
359 360 3.793797 TTTGATTCCGCGAGAGTCATA 57.206 42.857 18.31 13.21 40.55 2.15
360 361 3.793797 TTGATTCCGCGAGAGTCATAA 57.206 42.857 18.31 6.89 40.55 1.90
361 362 4.322080 TTGATTCCGCGAGAGTCATAAT 57.678 40.909 18.31 1.67 40.55 1.28
362 363 4.322080 TGATTCCGCGAGAGTCATAATT 57.678 40.909 8.23 0.00 36.39 1.40
363 364 4.051237 TGATTCCGCGAGAGTCATAATTG 58.949 43.478 8.23 0.00 36.39 2.32
364 365 3.520290 TTCCGCGAGAGTCATAATTGT 57.480 42.857 8.23 0.00 0.00 2.71
365 366 2.809446 TCCGCGAGAGTCATAATTGTG 58.191 47.619 8.23 0.00 0.00 3.33
366 367 1.258982 CCGCGAGAGTCATAATTGTGC 59.741 52.381 8.23 0.00 0.00 4.57
367 368 1.258982 CGCGAGAGTCATAATTGTGCC 59.741 52.381 0.00 0.00 0.00 5.01
368 369 2.555199 GCGAGAGTCATAATTGTGCCT 58.445 47.619 0.00 0.00 0.00 4.75
369 370 2.541762 GCGAGAGTCATAATTGTGCCTC 59.458 50.000 5.21 5.21 0.00 4.70
370 371 3.739519 GCGAGAGTCATAATTGTGCCTCT 60.740 47.826 14.58 14.58 0.00 3.69
371 372 4.437239 CGAGAGTCATAATTGTGCCTCTT 58.563 43.478 15.59 1.98 0.00 2.85
372 373 4.505922 CGAGAGTCATAATTGTGCCTCTTC 59.494 45.833 15.59 9.03 0.00 2.87
373 374 4.437239 AGAGTCATAATTGTGCCTCTTCG 58.563 43.478 9.64 0.00 0.00 3.79
374 375 3.535561 AGTCATAATTGTGCCTCTTCGG 58.464 45.455 0.00 0.00 0.00 4.30
375 376 3.197766 AGTCATAATTGTGCCTCTTCGGA 59.802 43.478 0.00 0.00 33.16 4.55
376 377 3.938963 GTCATAATTGTGCCTCTTCGGAA 59.061 43.478 0.00 0.00 33.16 4.30
377 378 4.394920 GTCATAATTGTGCCTCTTCGGAAA 59.605 41.667 0.00 0.00 33.16 3.13
378 379 4.635765 TCATAATTGTGCCTCTTCGGAAAG 59.364 41.667 0.00 0.00 33.16 2.62
379 380 2.859165 ATTGTGCCTCTTCGGAAAGA 57.141 45.000 0.00 0.00 39.22 2.52
380 381 2.631160 TTGTGCCTCTTCGGAAAGAA 57.369 45.000 0.00 0.00 40.95 2.52
381 382 2.631160 TGTGCCTCTTCGGAAAGAAA 57.369 45.000 0.00 0.00 40.95 2.52
382 383 2.925724 TGTGCCTCTTCGGAAAGAAAA 58.074 42.857 0.00 0.00 40.95 2.29
383 384 3.283751 TGTGCCTCTTCGGAAAGAAAAA 58.716 40.909 0.00 0.00 40.95 1.94
409 410 8.962884 AAAAGCATGTTCCAGTTTAATTTTCT 57.037 26.923 0.00 0.00 0.00 2.52
410 411 7.951530 AAGCATGTTCCAGTTTAATTTTCTG 57.048 32.000 0.00 0.00 0.00 3.02
411 412 6.458210 AGCATGTTCCAGTTTAATTTTCTGG 58.542 36.000 13.54 13.54 46.94 3.86
412 413 5.639082 GCATGTTCCAGTTTAATTTTCTGGG 59.361 40.000 17.23 7.32 45.97 4.45
413 414 6.741240 GCATGTTCCAGTTTAATTTTCTGGGT 60.741 38.462 17.23 5.31 45.97 4.51
414 415 6.399639 TGTTCCAGTTTAATTTTCTGGGTC 57.600 37.500 17.23 12.83 45.97 4.46
415 416 5.303333 TGTTCCAGTTTAATTTTCTGGGTCC 59.697 40.000 17.23 9.82 45.97 4.46
416 417 4.076394 TCCAGTTTAATTTTCTGGGTCCG 58.924 43.478 17.23 0.00 45.97 4.79
417 418 3.824443 CCAGTTTAATTTTCTGGGTCCGT 59.176 43.478 12.48 0.00 43.30 4.69
418 419 4.279922 CCAGTTTAATTTTCTGGGTCCGTT 59.720 41.667 12.48 0.00 43.30 4.44
419 420 5.221362 CCAGTTTAATTTTCTGGGTCCGTTT 60.221 40.000 12.48 0.00 43.30 3.60
420 421 6.277605 CAGTTTAATTTTCTGGGTCCGTTTT 58.722 36.000 0.00 0.00 0.00 2.43
421 422 6.759356 CAGTTTAATTTTCTGGGTCCGTTTTT 59.241 34.615 0.00 0.00 0.00 1.94
422 423 7.921745 CAGTTTAATTTTCTGGGTCCGTTTTTA 59.078 33.333 0.00 0.00 0.00 1.52
423 424 8.644216 AGTTTAATTTTCTGGGTCCGTTTTTAT 58.356 29.630 0.00 0.00 0.00 1.40
424 425 8.918658 GTTTAATTTTCTGGGTCCGTTTTTATC 58.081 33.333 0.00 0.00 0.00 1.75
425 426 4.752661 TTTTCTGGGTCCGTTTTTATCG 57.247 40.909 0.00 0.00 0.00 2.92
426 427 3.405823 TTCTGGGTCCGTTTTTATCGT 57.594 42.857 0.00 0.00 0.00 3.73
427 428 2.690786 TCTGGGTCCGTTTTTATCGTG 58.309 47.619 0.00 0.00 0.00 4.35
428 429 2.299582 TCTGGGTCCGTTTTTATCGTGA 59.700 45.455 0.00 0.00 0.00 4.35
429 430 3.055675 TCTGGGTCCGTTTTTATCGTGAT 60.056 43.478 0.00 0.00 0.00 3.06
430 431 4.160065 TCTGGGTCCGTTTTTATCGTGATA 59.840 41.667 0.00 0.00 0.00 2.15
431 432 4.829968 TGGGTCCGTTTTTATCGTGATAA 58.170 39.130 0.00 0.00 0.00 1.75
432 433 5.243981 TGGGTCCGTTTTTATCGTGATAAA 58.756 37.500 10.25 10.25 40.39 1.40
433 434 5.704515 TGGGTCCGTTTTTATCGTGATAAAA 59.295 36.000 18.92 18.92 45.93 1.52
449 450 9.653287 TCGTGATAAAAAGTTCATTGATCTAGT 57.347 29.630 0.00 0.00 0.00 2.57
457 458 9.784531 AAAAGTTCATTGATCTAGTTCTGAAGA 57.215 29.630 5.98 0.00 0.00 2.87
458 459 9.956640 AAAGTTCATTGATCTAGTTCTGAAGAT 57.043 29.630 5.98 0.00 35.15 2.40
459 460 9.598517 AAGTTCATTGATCTAGTTCTGAAGATC 57.401 33.333 9.78 9.78 45.52 2.75
460 461 8.980596 AGTTCATTGATCTAGTTCTGAAGATCT 58.019 33.333 15.28 0.00 45.52 2.75
461 462 9.248291 GTTCATTGATCTAGTTCTGAAGATCTC 57.752 37.037 15.28 0.00 45.52 2.75
462 463 7.647228 TCATTGATCTAGTTCTGAAGATCTCG 58.353 38.462 15.28 7.11 45.52 4.04
463 464 7.500559 TCATTGATCTAGTTCTGAAGATCTCGA 59.499 37.037 15.28 8.67 45.52 4.04
464 465 6.612247 TGATCTAGTTCTGAAGATCTCGAC 57.388 41.667 15.28 0.00 45.52 4.20
465 466 5.235401 TGATCTAGTTCTGAAGATCTCGACG 59.765 44.000 15.28 0.00 45.52 5.12
466 467 2.553079 AGTTCTGAAGATCTCGACGC 57.447 50.000 0.00 0.00 0.00 5.19
467 468 1.184349 GTTCTGAAGATCTCGACGCG 58.816 55.000 3.53 3.53 0.00 6.01
468 469 1.084289 TTCTGAAGATCTCGACGCGA 58.916 50.000 15.93 0.00 0.00 5.87
469 470 0.374063 TCTGAAGATCTCGACGCGAC 59.626 55.000 15.93 5.54 0.00 5.19
470 471 0.921662 CTGAAGATCTCGACGCGACG 60.922 60.000 24.29 24.29 0.00 5.12
471 472 1.651730 GAAGATCTCGACGCGACGG 60.652 63.158 28.61 19.44 0.00 4.79
472 473 2.307137 GAAGATCTCGACGCGACGGT 62.307 60.000 28.61 16.07 0.00 4.83
473 474 2.579241 AAGATCTCGACGCGACGGTG 62.579 60.000 28.61 21.12 0.00 4.94
474 475 3.092192 GATCTCGACGCGACGGTGA 62.092 63.158 28.61 24.91 0.00 4.02
475 476 2.573341 GATCTCGACGCGACGGTGAA 62.573 60.000 28.61 13.27 0.00 3.18
476 477 2.191354 ATCTCGACGCGACGGTGAAA 62.191 55.000 28.61 9.92 0.00 2.69
477 478 2.012414 CTCGACGCGACGGTGAAAA 61.012 57.895 28.61 9.20 0.00 2.29
478 479 2.166985 CGACGCGACGGTGAAAAC 59.833 61.111 22.72 0.00 0.00 2.43
479 480 2.166985 GACGCGACGGTGAAAACG 59.833 61.111 15.93 0.00 37.36 3.60
480 481 2.278726 ACGCGACGGTGAAAACGA 60.279 55.556 15.93 0.00 34.93 3.85
481 482 1.611592 GACGCGACGGTGAAAACGAT 61.612 55.000 15.93 0.00 34.93 3.73
482 483 1.216941 ACGCGACGGTGAAAACGATT 61.217 50.000 15.93 0.00 34.93 3.34
483 484 0.515717 CGCGACGGTGAAAACGATTC 60.516 55.000 0.00 0.00 34.93 2.52
484 485 0.509499 GCGACGGTGAAAACGATTCA 59.491 50.000 0.00 4.66 34.93 2.57
485 486 1.070443 GCGACGGTGAAAACGATTCAA 60.070 47.619 9.38 0.00 34.93 2.69
486 487 2.822827 CGACGGTGAAAACGATTCAAG 58.177 47.619 9.38 9.28 34.93 3.02
487 488 2.473609 CGACGGTGAAAACGATTCAAGA 59.526 45.455 9.38 0.00 34.93 3.02
488 489 3.122948 CGACGGTGAAAACGATTCAAGAT 59.877 43.478 9.38 0.21 34.93 2.40
489 490 4.377022 CGACGGTGAAAACGATTCAAGATT 60.377 41.667 9.38 0.00 34.93 2.40
490 491 5.432885 ACGGTGAAAACGATTCAAGATTT 57.567 34.783 9.38 0.00 34.93 2.17
491 492 5.212194 ACGGTGAAAACGATTCAAGATTTG 58.788 37.500 9.38 1.52 34.93 2.32
492 493 5.008217 ACGGTGAAAACGATTCAAGATTTGA 59.992 36.000 9.38 0.00 34.87 2.69
493 494 6.459024 ACGGTGAAAACGATTCAAGATTTGAA 60.459 34.615 6.69 6.69 43.01 2.69
494 495 8.201703 ACGGTGAAAACGATTCAAGATTTGAAG 61.202 37.037 9.73 1.12 42.56 3.02
506 507 7.523293 TCAAGATTTGAAGCATGGTTTAAGA 57.477 32.000 12.13 4.50 36.59 2.10
507 508 7.596494 TCAAGATTTGAAGCATGGTTTAAGAG 58.404 34.615 12.13 3.93 36.59 2.85
508 509 7.448161 TCAAGATTTGAAGCATGGTTTAAGAGA 59.552 33.333 12.13 0.00 36.59 3.10
509 510 7.951347 AGATTTGAAGCATGGTTTAAGAGAT 57.049 32.000 12.13 4.70 0.00 2.75
510 511 9.466497 AAGATTTGAAGCATGGTTTAAGAGATA 57.534 29.630 12.13 0.00 0.00 1.98
511 512 9.466497 AGATTTGAAGCATGGTTTAAGAGATAA 57.534 29.630 12.13 0.00 0.00 1.75
547 548 9.603298 AATAAACGAATCTACGAAAAGGAAAAC 57.397 29.630 0.00 0.00 37.03 2.43
548 549 6.856135 AACGAATCTACGAAAAGGAAAACT 57.144 33.333 0.00 0.00 37.03 2.66
549 550 6.463483 ACGAATCTACGAAAAGGAAAACTC 57.537 37.500 0.00 0.00 37.03 3.01
550 551 5.987347 ACGAATCTACGAAAAGGAAAACTCA 59.013 36.000 0.00 0.00 37.03 3.41
551 552 6.073927 ACGAATCTACGAAAAGGAAAACTCAC 60.074 38.462 0.00 0.00 37.03 3.51
552 553 6.073980 CGAATCTACGAAAAGGAAAACTCACA 60.074 38.462 0.00 0.00 35.09 3.58
553 554 6.787085 ATCTACGAAAAGGAAAACTCACAG 57.213 37.500 0.00 0.00 0.00 3.66
554 555 5.054477 TCTACGAAAAGGAAAACTCACAGG 58.946 41.667 0.00 0.00 0.00 4.00
555 556 3.617284 ACGAAAAGGAAAACTCACAGGT 58.383 40.909 0.00 0.00 0.00 4.00
556 557 4.014406 ACGAAAAGGAAAACTCACAGGTT 58.986 39.130 0.00 0.00 0.00 3.50
557 558 4.142469 ACGAAAAGGAAAACTCACAGGTTG 60.142 41.667 0.00 0.00 0.00 3.77
558 559 3.801114 AAAGGAAAACTCACAGGTTGC 57.199 42.857 0.00 0.00 0.00 4.17
559 560 1.308998 AGGAAAACTCACAGGTTGCG 58.691 50.000 0.00 0.00 0.00 4.85
560 561 1.134220 AGGAAAACTCACAGGTTGCGA 60.134 47.619 0.00 0.00 0.00 5.10
561 562 1.880027 GGAAAACTCACAGGTTGCGAT 59.120 47.619 0.00 0.00 0.00 4.58
562 563 3.071479 GGAAAACTCACAGGTTGCGATA 58.929 45.455 0.00 0.00 0.00 2.92
563 564 3.689649 GGAAAACTCACAGGTTGCGATAT 59.310 43.478 0.00 0.00 0.00 1.63
564 565 4.437390 GGAAAACTCACAGGTTGCGATATG 60.437 45.833 0.00 0.00 0.00 1.78
565 566 3.334583 AACTCACAGGTTGCGATATGT 57.665 42.857 0.00 0.00 0.00 2.29
566 567 2.621338 ACTCACAGGTTGCGATATGTG 58.379 47.619 12.94 12.94 43.44 3.21
567 568 1.935873 CTCACAGGTTGCGATATGTGG 59.064 52.381 17.02 7.95 42.56 4.17
568 569 0.378257 CACAGGTTGCGATATGTGGC 59.622 55.000 11.77 0.00 39.45 5.01
569 570 0.035534 ACAGGTTGCGATATGTGGCA 60.036 50.000 0.00 0.00 37.29 4.92
570 571 0.659427 CAGGTTGCGATATGTGGCAG 59.341 55.000 0.00 0.00 40.26 4.85
571 572 0.464373 AGGTTGCGATATGTGGCAGG 60.464 55.000 0.00 0.00 40.26 4.85
572 573 0.748005 GGTTGCGATATGTGGCAGGT 60.748 55.000 0.00 0.00 40.26 4.00
573 574 0.378257 GTTGCGATATGTGGCAGGTG 59.622 55.000 0.00 0.00 40.26 4.00
574 575 0.251634 TTGCGATATGTGGCAGGTGA 59.748 50.000 0.00 0.00 40.26 4.02
575 576 0.251634 TGCGATATGTGGCAGGTGAA 59.748 50.000 0.00 0.00 33.92 3.18
576 577 1.339535 TGCGATATGTGGCAGGTGAAA 60.340 47.619 0.00 0.00 33.92 2.69
577 578 1.742831 GCGATATGTGGCAGGTGAAAA 59.257 47.619 0.00 0.00 0.00 2.29
578 579 2.358898 GCGATATGTGGCAGGTGAAAAT 59.641 45.455 0.00 0.00 0.00 1.82
579 580 3.181487 GCGATATGTGGCAGGTGAAAATT 60.181 43.478 0.00 0.00 0.00 1.82
580 581 4.036262 GCGATATGTGGCAGGTGAAAATTA 59.964 41.667 0.00 0.00 0.00 1.40
581 582 5.278463 GCGATATGTGGCAGGTGAAAATTAT 60.278 40.000 0.00 0.00 0.00 1.28
582 583 6.373779 CGATATGTGGCAGGTGAAAATTATC 58.626 40.000 0.00 0.00 0.00 1.75
583 584 6.205464 CGATATGTGGCAGGTGAAAATTATCT 59.795 38.462 0.00 0.00 0.00 1.98
584 585 7.255242 CGATATGTGGCAGGTGAAAATTATCTT 60.255 37.037 0.00 0.00 0.00 2.40
585 586 6.610075 ATGTGGCAGGTGAAAATTATCTTT 57.390 33.333 0.00 0.00 0.00 2.52
586 587 5.782047 TGTGGCAGGTGAAAATTATCTTTG 58.218 37.500 0.00 0.00 0.00 2.77
587 588 4.627035 GTGGCAGGTGAAAATTATCTTTGC 59.373 41.667 0.00 0.00 0.00 3.68
588 589 4.282957 TGGCAGGTGAAAATTATCTTTGCA 59.717 37.500 0.00 0.00 0.00 4.08
589 590 5.221601 TGGCAGGTGAAAATTATCTTTGCAA 60.222 36.000 0.00 0.00 0.00 4.08
590 591 5.700373 GGCAGGTGAAAATTATCTTTGCAAA 59.300 36.000 12.14 12.14 0.00 3.68
591 592 6.204495 GGCAGGTGAAAATTATCTTTGCAAAA 59.796 34.615 13.84 5.01 0.00 2.44
592 593 7.255070 GGCAGGTGAAAATTATCTTTGCAAAAA 60.255 33.333 13.84 5.27 0.00 1.94
593 594 7.799914 GCAGGTGAAAATTATCTTTGCAAAAAG 59.200 33.333 13.84 2.24 0.00 2.27
594 595 8.829612 CAGGTGAAAATTATCTTTGCAAAAAGT 58.170 29.630 13.84 1.15 0.00 2.66
602 603 9.696917 AATTATCTTTGCAAAAAGTACTCCTTG 57.303 29.630 13.84 10.97 32.32 3.61
603 604 6.959639 ATCTTTGCAAAAAGTACTCCTTGA 57.040 33.333 13.84 2.70 32.32 3.02
604 605 6.959639 TCTTTGCAAAAAGTACTCCTTGAT 57.040 33.333 13.84 0.00 32.32 2.57
605 606 7.346751 TCTTTGCAAAAAGTACTCCTTGATT 57.653 32.000 13.84 0.00 32.32 2.57
606 607 8.458573 TCTTTGCAAAAAGTACTCCTTGATTA 57.541 30.769 13.84 4.07 32.32 1.75
607 608 8.908903 TCTTTGCAAAAAGTACTCCTTGATTAA 58.091 29.630 13.84 8.38 32.32 1.40
608 609 9.696917 CTTTGCAAAAAGTACTCCTTGATTAAT 57.303 29.630 13.84 0.00 32.32 1.40
620 621 8.438676 ACTCCTTGATTAATTAGTGATTTCGG 57.561 34.615 0.00 0.00 0.00 4.30
621 622 8.265055 ACTCCTTGATTAATTAGTGATTTCGGA 58.735 33.333 0.00 0.00 0.00 4.55
622 623 9.109393 CTCCTTGATTAATTAGTGATTTCGGAA 57.891 33.333 0.00 0.00 0.00 4.30
623 624 9.109393 TCCTTGATTAATTAGTGATTTCGGAAG 57.891 33.333 0.00 0.00 0.00 3.46
624 625 9.109393 CCTTGATTAATTAGTGATTTCGGAAGA 57.891 33.333 0.00 0.00 39.20 2.87
643 644 0.323629 AATCGAAAACCCTGCCTCGA 59.676 50.000 0.00 0.00 43.74 4.04
654 655 4.785453 GCCTCGAACTGGGCCAGG 62.785 72.222 35.34 19.81 42.30 4.45
674 675 2.518949 GCCACGTCATTACATGCAAAG 58.481 47.619 0.00 0.00 0.00 2.77
707 708 1.591183 CCCAACCCAAATTCAGCCG 59.409 57.895 0.00 0.00 0.00 5.52
931 943 1.365999 CCAAAACCGACCAAAGCCC 59.634 57.895 0.00 0.00 0.00 5.19
932 944 1.112916 CCAAAACCGACCAAAGCCCT 61.113 55.000 0.00 0.00 0.00 5.19
933 945 0.031994 CAAAACCGACCAAAGCCCTG 59.968 55.000 0.00 0.00 0.00 4.45
934 946 0.106419 AAAACCGACCAAAGCCCTGA 60.106 50.000 0.00 0.00 0.00 3.86
939 959 1.073897 GACCAAAGCCCTGACTGCT 59.926 57.895 0.00 0.00 41.89 4.24
1131 1151 3.900892 CCGCTCGGGTACATCGCT 61.901 66.667 0.00 0.00 0.00 4.93
1139 1159 1.509463 GGTACATCGCTGACCACGA 59.491 57.895 0.00 0.00 44.75 4.35
1488 1508 3.134127 GGCGCGCATTTCCTCCTT 61.134 61.111 34.42 0.00 0.00 3.36
1542 1562 4.404073 GTCTATGACCTCCATGTGTTCTCT 59.596 45.833 0.00 0.00 36.71 3.10
1547 1567 2.039084 ACCTCCATGTGTTCTCTTCCAC 59.961 50.000 0.00 0.00 0.00 4.02
1863 1883 3.285484 ACATCAAAGGCATGATCCTGAC 58.715 45.455 0.00 0.00 37.96 3.51
1973 1993 5.187186 GGTATAGAAGGTTCTCTTGTGACCA 59.813 44.000 0.00 0.00 36.71 4.02
2063 2083 1.604185 GCCTGAGCTGACGGATGATAC 60.604 57.143 0.00 0.00 35.50 2.24
2241 2261 2.493278 CGAATTGGCACCATTTCCTCTT 59.507 45.455 15.26 0.00 34.62 2.85
2335 2355 7.701539 ACCAATGCTTGTTTGTAGATCATAA 57.298 32.000 0.00 0.00 0.00 1.90
2337 2357 8.752187 ACCAATGCTTGTTTGTAGATCATAAAT 58.248 29.630 0.00 0.00 0.00 1.40
2368 2388 7.502895 TCCTTGGAGACATAGTACTCTGATTAC 59.497 40.741 14.64 4.18 42.32 1.89
2388 2408 8.828644 TGATTACGTTCTTTTGTTAAGCAAGTA 58.171 29.630 0.00 0.00 38.47 2.24
2392 2412 8.556517 ACGTTCTTTTGTTAAGCAAGTATTTC 57.443 30.769 0.00 0.00 38.47 2.17
2450 2470 1.228367 CTGCTGGTCTGGGTTGCTT 60.228 57.895 0.00 0.00 0.00 3.91
2459 2479 1.144708 TCTGGGTTGCTTTCACCATGA 59.855 47.619 0.00 0.00 31.62 3.07
2480 2500 7.255346 CCATGAATGCAAATTGAGTAGCTCATA 60.255 37.037 0.00 0.00 40.39 2.15
2610 2631 5.678132 TGCATTCACGATATTGATTCTGG 57.322 39.130 0.00 0.00 0.00 3.86
2656 2677 9.409312 TGTGATTGTTGAGTTTAGCATTAAATG 57.591 29.630 0.00 0.00 31.81 2.32
2806 2827 5.228635 CGATCATAGCAAAACACAATTCAGC 59.771 40.000 0.00 0.00 0.00 4.26
2807 2828 5.710513 TCATAGCAAAACACAATTCAGCT 57.289 34.783 0.00 0.00 34.84 4.24
2811 2832 2.804212 GCAAAACACAATTCAGCTGGCT 60.804 45.455 15.13 0.00 0.00 4.75
2864 2885 3.057969 TGTCACTGCCAAATCTGTAGG 57.942 47.619 0.00 0.00 0.00 3.18
2865 2886 2.290260 TGTCACTGCCAAATCTGTAGGG 60.290 50.000 0.00 0.00 0.00 3.53
2866 2887 2.027192 GTCACTGCCAAATCTGTAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2867 2888 2.846206 TCACTGCCAAATCTGTAGGGAT 59.154 45.455 0.00 0.00 0.00 3.85
2868 2889 4.037222 TCACTGCCAAATCTGTAGGGATA 58.963 43.478 0.00 0.00 0.00 2.59
2869 2890 4.660303 TCACTGCCAAATCTGTAGGGATAT 59.340 41.667 0.00 0.00 0.00 1.63
2870 2891 4.999950 CACTGCCAAATCTGTAGGGATATC 59.000 45.833 0.00 0.00 0.00 1.63
2871 2892 4.042187 ACTGCCAAATCTGTAGGGATATCC 59.958 45.833 13.87 13.87 0.00 2.59
2877 2898 6.407074 CCAAATCTGTAGGGATATCCGGATAC 60.407 46.154 26.28 18.39 41.52 2.24
2889 2910 9.619741 GGGATATCCGGATACAGAAACTTCTGG 62.620 48.148 26.28 5.00 46.85 3.86
2960 2984 7.988737 TGACTGAACTTCAATTGGCAATATAG 58.011 34.615 14.05 12.81 0.00 1.31
3019 3043 8.646004 TGAGGTTTTGTGGATGAATGATTTTTA 58.354 29.630 0.00 0.00 0.00 1.52
3056 3080 4.014847 TGTTTGCTGTATGCGCTATTTC 57.985 40.909 9.73 0.00 46.63 2.17
3071 3095 4.384846 CGCTATTTCTAGTGTTGTGACGTT 59.615 41.667 0.00 0.00 31.97 3.99
3105 3129 3.420893 TGAACATAAGAGTGGCTTTGGG 58.579 45.455 0.00 0.00 38.05 4.12
3115 3139 4.977393 GCTTTGGGGCCTTCGATA 57.023 55.556 0.84 0.00 0.00 2.92
3236 3260 0.533755 CCATCCTCGCCATCCAGAAC 60.534 60.000 0.00 0.00 0.00 3.01
3290 3314 4.821805 TGGAGATTTTTCTGGTGTCTCAAC 59.178 41.667 0.00 0.00 37.61 3.18
3308 3332 3.253677 TCAACCTCTGTTCTCGTCTTCTC 59.746 47.826 0.00 0.00 30.42 2.87
3347 3371 7.161715 TCCCATTTTATTTACTGGGCTATCT 57.838 36.000 1.46 0.00 46.64 1.98
3374 3398 1.055849 TGCTGCTACCTTTGAGTGGA 58.944 50.000 0.00 0.00 0.00 4.02
3376 3400 2.012673 GCTGCTACCTTTGAGTGGATG 58.987 52.381 0.00 0.00 0.00 3.51
3390 3414 9.840427 CTTTGAGTGGATGTCGTTTTATAATTT 57.160 29.630 0.00 0.00 0.00 1.82
3452 3476 7.989416 TTTGGTTAACTGGTCTTTGTATAGG 57.011 36.000 5.42 0.00 0.00 2.57
3515 3541 9.715121 AAAAACTTACTGTTGGTCGAAGATATA 57.285 29.630 0.00 0.00 37.75 0.86
3525 3552 5.466819 TGGTCGAAGATATATTAAGTGGCG 58.533 41.667 0.00 0.00 40.67 5.69
3526 3553 5.010314 TGGTCGAAGATATATTAAGTGGCGT 59.990 40.000 0.00 0.00 40.67 5.68
3619 3647 7.066284 ACAGATACAGTATCCTTTTGTGCATTC 59.934 37.037 15.87 0.00 35.79 2.67
3644 3672 3.861840 TCTCTTATGGCTCGTGGAAAAG 58.138 45.455 0.00 0.00 0.00 2.27
3806 3834 3.953612 AGTTGTTCTTGACTTGGCAATGA 59.046 39.130 0.00 0.00 0.00 2.57
3815 3843 6.885918 TCTTGACTTGGCAATGATGAATAAGA 59.114 34.615 0.00 0.76 0.00 2.10
3870 3898 5.903764 TCAATCGCAATTTTTGACAAAGG 57.096 34.783 0.10 0.00 0.00 3.11
3878 3906 5.702209 GCAATTTTTGACAAAGGATGATGGT 59.298 36.000 0.10 0.00 0.00 3.55
3988 6220 4.382040 CCATCAATCTGAGGTTACAGTCGT 60.382 45.833 0.00 0.00 38.79 4.34
4014 6254 0.035439 CTCGTACCCCAATGCCAACT 60.035 55.000 0.00 0.00 0.00 3.16
4015 6255 0.322098 TCGTACCCCAATGCCAACTG 60.322 55.000 0.00 0.00 0.00 3.16
4040 6280 3.470567 GCGCCGACGACAACAGAG 61.471 66.667 0.00 0.00 43.93 3.35
4153 6406 5.584649 ACGTGTATGGTTATGGTGAATTGAG 59.415 40.000 0.00 0.00 0.00 3.02
4160 6413 1.376543 ATGGTGAATTGAGAGCGCAG 58.623 50.000 11.47 0.00 0.00 5.18
4167 6420 0.176680 ATTGAGAGCGCAGGTGGTAG 59.823 55.000 11.47 0.00 39.88 3.18
4168 6421 1.185618 TTGAGAGCGCAGGTGGTAGT 61.186 55.000 11.47 0.00 39.88 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.023963 GCCTCTTGTGGAAGTAGAAAACAC 60.024 45.833 0.00 0.00 0.00 3.32
1 2 4.134563 GCCTCTTGTGGAAGTAGAAAACA 58.865 43.478 0.00 0.00 0.00 2.83
2 3 4.134563 TGCCTCTTGTGGAAGTAGAAAAC 58.865 43.478 0.00 0.00 0.00 2.43
3 4 4.431416 TGCCTCTTGTGGAAGTAGAAAA 57.569 40.909 0.00 0.00 0.00 2.29
4 5 4.640771 ATGCCTCTTGTGGAAGTAGAAA 57.359 40.909 0.00 0.00 0.00 2.52
5 6 5.023452 TCTATGCCTCTTGTGGAAGTAGAA 58.977 41.667 0.00 0.00 0.00 2.10
6 7 4.610333 TCTATGCCTCTTGTGGAAGTAGA 58.390 43.478 0.00 0.00 0.00 2.59
7 8 5.543507 ATCTATGCCTCTTGTGGAAGTAG 57.456 43.478 0.00 0.00 0.00 2.57
8 9 5.957771 AATCTATGCCTCTTGTGGAAGTA 57.042 39.130 0.00 0.00 0.00 2.24
9 10 4.851639 AATCTATGCCTCTTGTGGAAGT 57.148 40.909 0.00 0.00 0.00 3.01
10 11 6.352516 AGTAAATCTATGCCTCTTGTGGAAG 58.647 40.000 0.00 0.00 0.00 3.46
11 12 6.313519 AGTAAATCTATGCCTCTTGTGGAA 57.686 37.500 0.00 0.00 0.00 3.53
12 13 5.957771 AGTAAATCTATGCCTCTTGTGGA 57.042 39.130 0.00 0.00 0.00 4.02
13 14 5.220931 GCAAGTAAATCTATGCCTCTTGTGG 60.221 44.000 0.00 0.00 34.99 4.17
14 15 5.503031 CGCAAGTAAATCTATGCCTCTTGTG 60.503 44.000 0.00 0.00 36.27 3.33
15 16 4.572389 CGCAAGTAAATCTATGCCTCTTGT 59.428 41.667 0.00 0.00 35.41 3.16
16 17 4.553547 GCGCAAGTAAATCTATGCCTCTTG 60.554 45.833 0.30 0.00 41.68 3.02
17 18 3.561725 GCGCAAGTAAATCTATGCCTCTT 59.438 43.478 0.30 0.00 41.68 2.85
18 19 3.134458 GCGCAAGTAAATCTATGCCTCT 58.866 45.455 0.30 0.00 41.68 3.69
19 20 2.096713 CGCGCAAGTAAATCTATGCCTC 60.097 50.000 8.75 0.00 41.68 4.70
20 21 1.867233 CGCGCAAGTAAATCTATGCCT 59.133 47.619 8.75 0.00 41.68 4.75
21 22 1.069906 CCGCGCAAGTAAATCTATGCC 60.070 52.381 8.75 0.00 41.68 4.40
22 23 1.864711 TCCGCGCAAGTAAATCTATGC 59.135 47.619 8.75 0.00 41.68 3.14
23 24 4.732285 AATCCGCGCAAGTAAATCTATG 57.268 40.909 8.75 0.00 41.68 2.23
24 25 4.554723 GCAAATCCGCGCAAGTAAATCTAT 60.555 41.667 8.75 0.00 41.68 1.98
25 26 3.242608 GCAAATCCGCGCAAGTAAATCTA 60.243 43.478 8.75 0.00 41.68 1.98
26 27 2.477863 GCAAATCCGCGCAAGTAAATCT 60.478 45.455 8.75 0.00 41.68 2.40
27 28 1.846175 GCAAATCCGCGCAAGTAAATC 59.154 47.619 8.75 0.00 41.68 2.17
28 29 1.472480 AGCAAATCCGCGCAAGTAAAT 59.528 42.857 8.75 0.00 41.68 1.40
29 30 0.878416 AGCAAATCCGCGCAAGTAAA 59.122 45.000 8.75 0.00 41.68 2.01
30 31 0.878416 AAGCAAATCCGCGCAAGTAA 59.122 45.000 8.75 0.00 41.68 2.24
31 32 0.446222 GAAGCAAATCCGCGCAAGTA 59.554 50.000 8.75 0.00 41.68 2.24
32 33 1.210155 GAAGCAAATCCGCGCAAGT 59.790 52.632 8.75 0.00 41.68 3.16
33 34 1.514873 GGAAGCAAATCCGCGCAAG 60.515 57.895 8.75 0.00 36.85 4.01
34 35 2.566010 GGAAGCAAATCCGCGCAA 59.434 55.556 8.75 0.00 36.85 4.85
47 48 2.507992 CTGTGCCTCTCGCGGAAG 60.508 66.667 6.13 3.71 42.08 3.46
48 49 3.282745 GACTGTGCCTCTCGCGGAA 62.283 63.158 6.13 0.00 42.08 4.30
49 50 3.749064 GACTGTGCCTCTCGCGGA 61.749 66.667 6.13 1.01 42.08 5.54
50 51 3.362399 ATGACTGTGCCTCTCGCGG 62.362 63.158 6.13 0.00 42.08 6.46
51 52 2.163390 CATGACTGTGCCTCTCGCG 61.163 63.158 0.00 0.00 42.08 5.87
52 53 2.459442 GCATGACTGTGCCTCTCGC 61.459 63.158 0.00 0.00 39.18 5.03
53 54 3.791539 GCATGACTGTGCCTCTCG 58.208 61.111 0.00 0.00 39.18 4.04
59 60 0.390340 TTCGAGAGGCATGACTGTGC 60.390 55.000 5.31 0.00 44.31 4.57
60 61 2.084610 TTTCGAGAGGCATGACTGTG 57.915 50.000 5.31 0.00 0.00 3.66
61 62 2.300152 TCTTTTCGAGAGGCATGACTGT 59.700 45.455 5.31 0.00 0.00 3.55
62 63 2.964740 TCTTTTCGAGAGGCATGACTG 58.035 47.619 5.31 0.00 0.00 3.51
63 64 3.685139 TTCTTTTCGAGAGGCATGACT 57.315 42.857 0.00 0.00 35.37 3.41
64 65 4.452455 TCTTTTCTTTTCGAGAGGCATGAC 59.548 41.667 0.00 0.00 35.37 3.06
65 66 4.641396 TCTTTTCTTTTCGAGAGGCATGA 58.359 39.130 0.00 0.00 35.37 3.07
66 67 5.362556 TTCTTTTCTTTTCGAGAGGCATG 57.637 39.130 0.00 0.00 35.37 4.06
67 68 6.391227 TTTTCTTTTCTTTTCGAGAGGCAT 57.609 33.333 0.00 0.00 35.37 4.40
68 69 5.828299 TTTTCTTTTCTTTTCGAGAGGCA 57.172 34.783 0.00 0.00 35.37 4.75
69 70 6.020599 GTGTTTTTCTTTTCTTTTCGAGAGGC 60.021 38.462 0.00 0.00 35.37 4.70
70 71 6.472486 GGTGTTTTTCTTTTCTTTTCGAGAGG 59.528 38.462 0.00 0.00 35.37 3.69
71 72 7.251281 AGGTGTTTTTCTTTTCTTTTCGAGAG 58.749 34.615 0.00 0.00 35.37 3.20
72 73 7.153217 AGGTGTTTTTCTTTTCTTTTCGAGA 57.847 32.000 0.00 0.00 0.00 4.04
73 74 7.812309 AAGGTGTTTTTCTTTTCTTTTCGAG 57.188 32.000 0.00 0.00 0.00 4.04
74 75 8.596271 AAAAGGTGTTTTTCTTTTCTTTTCGA 57.404 26.923 0.00 0.00 38.39 3.71
87 88 6.400621 CGCGAAAGAAAGAAAAAGGTGTTTTT 60.401 34.615 0.00 0.00 46.44 1.94
88 89 5.061684 CGCGAAAGAAAGAAAAAGGTGTTTT 59.938 36.000 0.00 0.00 37.48 2.43
89 90 4.561213 CGCGAAAGAAAGAAAAAGGTGTTT 59.439 37.500 0.00 0.00 0.00 2.83
90 91 4.102649 CGCGAAAGAAAGAAAAAGGTGTT 58.897 39.130 0.00 0.00 0.00 3.32
91 92 3.375922 TCGCGAAAGAAAGAAAAAGGTGT 59.624 39.130 6.20 0.00 0.00 4.16
92 93 3.947626 TCGCGAAAGAAAGAAAAAGGTG 58.052 40.909 6.20 0.00 0.00 4.00
93 94 3.875134 TCTCGCGAAAGAAAGAAAAAGGT 59.125 39.130 11.33 0.00 0.00 3.50
94 95 4.458708 CTCTCGCGAAAGAAAGAAAAAGG 58.541 43.478 11.33 0.00 0.00 3.11
95 96 4.458708 CCTCTCGCGAAAGAAAGAAAAAG 58.541 43.478 11.91 0.00 0.00 2.27
96 97 3.303791 GCCTCTCGCGAAAGAAAGAAAAA 60.304 43.478 11.91 0.00 0.00 1.94
97 98 2.223377 GCCTCTCGCGAAAGAAAGAAAA 59.777 45.455 11.91 0.00 0.00 2.29
98 99 1.798813 GCCTCTCGCGAAAGAAAGAAA 59.201 47.619 11.91 0.00 0.00 2.52
99 100 1.270094 TGCCTCTCGCGAAAGAAAGAA 60.270 47.619 11.91 0.00 42.08 2.52
100 101 0.317160 TGCCTCTCGCGAAAGAAAGA 59.683 50.000 11.91 1.76 42.08 2.52
101 102 0.440371 GTGCCTCTCGCGAAAGAAAG 59.560 55.000 11.91 3.23 42.08 2.62
102 103 0.249699 TGTGCCTCTCGCGAAAGAAA 60.250 50.000 11.91 0.00 42.08 2.52
103 104 0.037326 ATGTGCCTCTCGCGAAAGAA 60.037 50.000 11.91 0.00 42.08 2.52
104 105 0.815095 TATGTGCCTCTCGCGAAAGA 59.185 50.000 11.91 4.24 42.08 2.52
105 106 1.858091 ATATGTGCCTCTCGCGAAAG 58.142 50.000 11.33 6.30 42.08 2.62
106 107 2.309528 AATATGTGCCTCTCGCGAAA 57.690 45.000 11.33 0.00 42.08 3.46
107 108 2.309528 AAATATGTGCCTCTCGCGAA 57.690 45.000 11.33 0.02 42.08 4.70
108 109 3.660501 ATAAATATGTGCCTCTCGCGA 57.339 42.857 9.26 9.26 42.08 5.87
109 110 4.732285 AAATAAATATGTGCCTCTCGCG 57.268 40.909 0.00 0.00 42.08 5.87
110 111 8.905702 CAAATAAAATAAATATGTGCCTCTCGC 58.094 33.333 0.00 0.00 38.31 5.03
115 116 9.030301 GCGTTCAAATAAAATAAATATGTGCCT 57.970 29.630 0.00 0.00 0.00 4.75
116 117 8.812329 TGCGTTCAAATAAAATAAATATGTGCC 58.188 29.630 0.00 0.00 0.00 5.01
117 118 9.618410 GTGCGTTCAAATAAAATAAATATGTGC 57.382 29.630 0.00 0.00 0.00 4.57
140 141 3.437428 TCTCGCAAATGCAAATATGTGC 58.563 40.909 11.21 11.21 45.15 4.57
141 142 4.039703 CCTCTCGCAAATGCAAATATGTG 58.960 43.478 6.18 0.00 42.21 3.21
142 143 3.489738 GCCTCTCGCAAATGCAAATATGT 60.490 43.478 6.18 0.00 42.21 2.29
143 144 3.047796 GCCTCTCGCAAATGCAAATATG 58.952 45.455 6.18 0.00 42.21 1.78
144 145 3.360249 GCCTCTCGCAAATGCAAATAT 57.640 42.857 6.18 0.00 42.21 1.28
145 146 2.849880 GCCTCTCGCAAATGCAAATA 57.150 45.000 6.18 0.00 42.21 1.40
146 147 3.727419 GCCTCTCGCAAATGCAAAT 57.273 47.368 6.18 0.00 42.21 2.32
156 157 3.833706 GCATAATTGTGCCTCTCGC 57.166 52.632 15.69 0.00 39.18 5.03
163 164 4.346129 CTTTTCGAGAGGCATAATTGTGC 58.654 43.478 18.02 18.02 44.31 4.57
164 165 4.201950 CCCTTTTCGAGAGGCATAATTGTG 60.202 45.833 10.56 0.00 32.74 3.33
165 166 3.947834 CCCTTTTCGAGAGGCATAATTGT 59.052 43.478 10.56 0.00 32.74 2.71
166 167 4.199310 TCCCTTTTCGAGAGGCATAATTG 58.801 43.478 10.56 0.00 32.74 2.32
167 168 4.503714 TCCCTTTTCGAGAGGCATAATT 57.496 40.909 10.56 0.00 32.74 1.40
168 169 4.503714 TTCCCTTTTCGAGAGGCATAAT 57.496 40.909 10.56 0.00 32.74 1.28
169 170 3.992943 TTCCCTTTTCGAGAGGCATAA 57.007 42.857 10.56 3.54 32.74 1.90
170 171 3.992943 TTTCCCTTTTCGAGAGGCATA 57.007 42.857 10.56 0.00 32.74 3.14
171 172 2.879103 TTTCCCTTTTCGAGAGGCAT 57.121 45.000 10.56 0.00 32.74 4.40
172 173 2.504367 CTTTTCCCTTTTCGAGAGGCA 58.496 47.619 10.56 0.00 32.74 4.75
173 174 1.200252 GCTTTTCCCTTTTCGAGAGGC 59.800 52.381 10.56 0.00 32.74 4.70
174 175 2.226674 GTGCTTTTCCCTTTTCGAGAGG 59.773 50.000 9.36 9.36 0.00 3.69
175 176 2.878406 TGTGCTTTTCCCTTTTCGAGAG 59.122 45.455 0.00 0.00 0.00 3.20
176 177 2.925724 TGTGCTTTTCCCTTTTCGAGA 58.074 42.857 0.00 0.00 0.00 4.04
177 178 3.923017 ATGTGCTTTTCCCTTTTCGAG 57.077 42.857 0.00 0.00 0.00 4.04
178 179 4.664150 AAATGTGCTTTTCCCTTTTCGA 57.336 36.364 0.00 0.00 0.00 3.71
179 180 5.733226 AAAAATGTGCTTTTCCCTTTTCG 57.267 34.783 0.00 0.00 36.01 3.46
201 202 9.745018 AGAAATAAATCTTGTCTCTCATGGAAA 57.255 29.630 0.00 0.00 0.00 3.13
202 203 9.388506 GAGAAATAAATCTTGTCTCTCATGGAA 57.611 33.333 0.00 0.00 33.45 3.53
203 204 7.708322 CGAGAAATAAATCTTGTCTCTCATGGA 59.292 37.037 0.00 0.00 33.95 3.41
204 205 7.493971 ACGAGAAATAAATCTTGTCTCTCATGG 59.506 37.037 0.00 0.00 39.38 3.66
205 206 8.326713 CACGAGAAATAAATCTTGTCTCTCATG 58.673 37.037 0.00 0.00 41.20 3.07
206 207 7.493971 CCACGAGAAATAAATCTTGTCTCTCAT 59.506 37.037 0.00 0.00 41.20 2.90
207 208 6.813649 CCACGAGAAATAAATCTTGTCTCTCA 59.186 38.462 0.00 0.00 41.20 3.27
208 209 6.256757 CCCACGAGAAATAAATCTTGTCTCTC 59.743 42.308 0.00 0.00 41.20 3.20
209 210 6.109359 CCCACGAGAAATAAATCTTGTCTCT 58.891 40.000 0.00 0.00 41.20 3.10
210 211 5.294552 CCCCACGAGAAATAAATCTTGTCTC 59.705 44.000 0.00 0.00 41.20 3.36
211 212 5.186198 CCCCACGAGAAATAAATCTTGTCT 58.814 41.667 0.00 0.00 41.20 3.41
212 213 4.941873 ACCCCACGAGAAATAAATCTTGTC 59.058 41.667 0.00 0.00 41.20 3.18
213 214 4.918588 ACCCCACGAGAAATAAATCTTGT 58.081 39.130 0.00 0.00 43.40 3.16
214 215 4.941263 TGACCCCACGAGAAATAAATCTTG 59.059 41.667 0.00 0.00 36.95 3.02
215 216 4.941873 GTGACCCCACGAGAAATAAATCTT 59.058 41.667 0.00 0.00 33.10 2.40
216 217 4.514401 GTGACCCCACGAGAAATAAATCT 58.486 43.478 0.00 0.00 33.10 2.40
217 218 4.877323 GTGACCCCACGAGAAATAAATC 57.123 45.455 0.00 0.00 33.10 2.17
229 230 0.893727 AAGCAAATCCGTGACCCCAC 60.894 55.000 0.00 0.00 39.86 4.61
230 231 0.608035 GAAGCAAATCCGTGACCCCA 60.608 55.000 0.00 0.00 0.00 4.96
231 232 1.313091 GGAAGCAAATCCGTGACCCC 61.313 60.000 0.00 0.00 0.00 4.95
232 233 2.180674 GGAAGCAAATCCGTGACCC 58.819 57.895 0.00 0.00 0.00 4.46
246 247 1.423395 GAATATGCCTCTCGCGGAAG 58.577 55.000 6.13 3.71 42.08 3.46
247 248 0.318699 CGAATATGCCTCTCGCGGAA 60.319 55.000 6.13 0.00 42.08 4.30
248 249 1.285950 CGAATATGCCTCTCGCGGA 59.714 57.895 6.13 1.01 42.08 5.54
249 250 1.007271 ACGAATATGCCTCTCGCGG 60.007 57.895 6.13 0.00 42.08 6.46
250 251 0.595053 ACACGAATATGCCTCTCGCG 60.595 55.000 0.00 0.00 42.08 5.87
251 252 1.132588 GACACGAATATGCCTCTCGC 58.867 55.000 0.00 0.00 36.03 5.03
252 253 2.292016 AGAGACACGAATATGCCTCTCG 59.708 50.000 0.00 0.00 38.53 4.04
253 254 4.037446 AGAAGAGACACGAATATGCCTCTC 59.963 45.833 0.00 0.00 0.00 3.20
254 255 3.957497 AGAAGAGACACGAATATGCCTCT 59.043 43.478 0.00 0.00 0.00 3.69
255 256 4.314740 AGAAGAGACACGAATATGCCTC 57.685 45.455 0.00 0.00 0.00 4.70
256 257 4.261238 CGTAGAAGAGACACGAATATGCCT 60.261 45.833 0.00 0.00 37.89 4.75
257 258 3.975670 CGTAGAAGAGACACGAATATGCC 59.024 47.826 0.00 0.00 37.89 4.40
258 259 4.845387 TCGTAGAAGAGACACGAATATGC 58.155 43.478 0.00 0.00 41.34 3.14
259 260 6.288426 TCTCGTAGAAGAGACACGAATATG 57.712 41.667 0.00 0.00 43.40 1.78
260 261 5.467399 CCTCTCGTAGAAGAGACACGAATAT 59.533 44.000 2.53 0.00 43.40 1.28
261 262 4.809958 CCTCTCGTAGAAGAGACACGAATA 59.190 45.833 2.53 0.00 43.40 1.75
262 263 3.623960 CCTCTCGTAGAAGAGACACGAAT 59.376 47.826 2.53 0.00 43.40 3.34
263 264 3.001414 CCTCTCGTAGAAGAGACACGAA 58.999 50.000 2.53 0.00 43.40 3.85
264 265 2.619147 CCTCTCGTAGAAGAGACACGA 58.381 52.381 2.53 0.00 41.86 4.35
265 266 1.062880 GCCTCTCGTAGAAGAGACACG 59.937 57.143 2.53 0.00 41.86 4.49
266 267 2.085320 TGCCTCTCGTAGAAGAGACAC 58.915 52.381 2.53 0.00 41.86 3.67
267 268 2.085320 GTGCCTCTCGTAGAAGAGACA 58.915 52.381 2.53 0.00 41.86 3.41
268 269 2.085320 TGTGCCTCTCGTAGAAGAGAC 58.915 52.381 2.53 0.00 41.86 3.36
269 270 2.491675 TGTGCCTCTCGTAGAAGAGA 57.508 50.000 2.53 0.00 44.23 3.10
270 271 3.701241 GAATGTGCCTCTCGTAGAAGAG 58.299 50.000 0.00 0.00 39.52 2.85
271 272 2.097629 CGAATGTGCCTCTCGTAGAAGA 59.902 50.000 0.00 0.00 34.09 2.87
272 273 2.159366 ACGAATGTGCCTCTCGTAGAAG 60.159 50.000 0.00 0.00 43.57 2.85
273 274 1.816835 ACGAATGTGCCTCTCGTAGAA 59.183 47.619 0.00 0.00 43.57 2.10
274 275 1.132453 CACGAATGTGCCTCTCGTAGA 59.868 52.381 0.00 0.00 43.55 2.59
275 276 1.550065 CACGAATGTGCCTCTCGTAG 58.450 55.000 0.00 0.00 43.55 3.51
276 277 3.713936 CACGAATGTGCCTCTCGTA 57.286 52.632 0.00 0.00 43.55 3.43
277 278 4.578913 CACGAATGTGCCTCTCGT 57.421 55.556 0.00 0.00 46.14 4.18
286 287 0.670546 CACGGAAGAGGCACGAATGT 60.671 55.000 0.00 0.00 0.00 2.71
287 288 0.389817 TCACGGAAGAGGCACGAATG 60.390 55.000 0.00 0.00 0.00 2.67
288 289 0.108615 CTCACGGAAGAGGCACGAAT 60.109 55.000 0.00 0.00 31.94 3.34
289 290 1.176619 TCTCACGGAAGAGGCACGAA 61.177 55.000 0.00 0.00 36.30 3.85
290 291 1.587043 CTCTCACGGAAGAGGCACGA 61.587 60.000 8.11 0.00 39.33 4.35
291 292 1.153939 CTCTCACGGAAGAGGCACG 60.154 63.158 8.11 0.00 39.33 5.34
292 293 4.900154 CTCTCACGGAAGAGGCAC 57.100 61.111 8.11 0.00 39.33 5.01
296 297 4.900154 GTGCCTCTCACGGAAGAG 57.100 61.111 8.85 8.85 42.09 2.85
303 304 5.389935 CGAGAAGTAAATTTGTGCCTCTCAC 60.390 44.000 0.00 0.00 45.82 3.51
304 305 4.690748 CGAGAAGTAAATTTGTGCCTCTCA 59.309 41.667 0.00 0.00 0.00 3.27
305 306 4.691216 ACGAGAAGTAAATTTGTGCCTCTC 59.309 41.667 0.00 4.77 0.00 3.20
306 307 4.452455 CACGAGAAGTAAATTTGTGCCTCT 59.548 41.667 0.00 0.00 0.00 3.69
307 308 4.378459 CCACGAGAAGTAAATTTGTGCCTC 60.378 45.833 0.00 2.27 0.00 4.70
308 309 3.502211 CCACGAGAAGTAAATTTGTGCCT 59.498 43.478 0.00 0.00 0.00 4.75
309 310 3.500680 TCCACGAGAAGTAAATTTGTGCC 59.499 43.478 0.00 0.00 0.00 5.01
310 311 4.378459 CCTCCACGAGAAGTAAATTTGTGC 60.378 45.833 0.00 0.00 0.00 4.57
311 312 4.755123 ACCTCCACGAGAAGTAAATTTGTG 59.245 41.667 0.00 0.00 0.00 3.33
312 313 4.969484 ACCTCCACGAGAAGTAAATTTGT 58.031 39.130 0.00 0.00 0.00 2.83
313 314 6.872020 TCTTACCTCCACGAGAAGTAAATTTG 59.128 38.462 0.00 0.00 0.00 2.32
314 315 7.001099 TCTTACCTCCACGAGAAGTAAATTT 57.999 36.000 0.00 0.00 0.00 1.82
315 316 6.600882 TCTTACCTCCACGAGAAGTAAATT 57.399 37.500 0.00 0.00 0.00 1.82
316 317 6.793505 ATCTTACCTCCACGAGAAGTAAAT 57.206 37.500 0.00 0.00 0.00 1.40
317 318 6.600882 AATCTTACCTCCACGAGAAGTAAA 57.399 37.500 0.00 0.00 0.00 2.01
318 319 6.209986 TCAAATCTTACCTCCACGAGAAGTAA 59.790 38.462 0.00 0.00 0.00 2.24
319 320 5.713389 TCAAATCTTACCTCCACGAGAAGTA 59.287 40.000 0.00 0.00 0.00 2.24
320 321 4.527038 TCAAATCTTACCTCCACGAGAAGT 59.473 41.667 0.00 0.00 0.00 3.01
321 322 5.073311 TCAAATCTTACCTCCACGAGAAG 57.927 43.478 0.00 0.00 0.00 2.85
322 323 5.677319 ATCAAATCTTACCTCCACGAGAA 57.323 39.130 0.00 0.00 0.00 2.87
323 324 5.395324 GGAATCAAATCTTACCTCCACGAGA 60.395 44.000 0.00 0.00 0.00 4.04
324 325 4.811557 GGAATCAAATCTTACCTCCACGAG 59.188 45.833 0.00 0.00 0.00 4.18
325 326 4.679639 CGGAATCAAATCTTACCTCCACGA 60.680 45.833 0.00 0.00 0.00 4.35
326 327 3.555956 CGGAATCAAATCTTACCTCCACG 59.444 47.826 0.00 0.00 0.00 4.94
327 328 3.312697 GCGGAATCAAATCTTACCTCCAC 59.687 47.826 0.00 0.00 0.00 4.02
328 329 3.541632 GCGGAATCAAATCTTACCTCCA 58.458 45.455 0.00 0.00 0.00 3.86
329 330 2.544267 CGCGGAATCAAATCTTACCTCC 59.456 50.000 0.00 0.00 0.00 4.30
330 331 3.454375 TCGCGGAATCAAATCTTACCTC 58.546 45.455 6.13 0.00 0.00 3.85
331 332 3.132289 TCTCGCGGAATCAAATCTTACCT 59.868 43.478 6.13 0.00 0.00 3.08
332 333 3.454375 TCTCGCGGAATCAAATCTTACC 58.546 45.455 6.13 0.00 0.00 2.85
333 334 4.113354 ACTCTCGCGGAATCAAATCTTAC 58.887 43.478 6.13 0.00 0.00 2.34
334 335 4.142249 TGACTCTCGCGGAATCAAATCTTA 60.142 41.667 6.13 0.00 26.43 2.10
335 336 3.190874 GACTCTCGCGGAATCAAATCTT 58.809 45.455 6.13 0.00 0.00 2.40
336 337 2.166459 TGACTCTCGCGGAATCAAATCT 59.834 45.455 6.13 0.00 26.43 2.40
337 338 2.540515 TGACTCTCGCGGAATCAAATC 58.459 47.619 6.13 0.00 26.43 2.17
338 339 2.672961 TGACTCTCGCGGAATCAAAT 57.327 45.000 6.13 0.00 26.43 2.32
339 340 2.672961 ATGACTCTCGCGGAATCAAA 57.327 45.000 6.13 0.00 33.77 2.69
340 341 3.793797 TTATGACTCTCGCGGAATCAA 57.206 42.857 6.13 0.00 33.77 2.57
341 342 4.051237 CAATTATGACTCTCGCGGAATCA 58.949 43.478 6.13 8.79 34.59 2.57
342 343 4.051922 ACAATTATGACTCTCGCGGAATC 58.948 43.478 6.13 2.38 0.00 2.52
343 344 3.804325 CACAATTATGACTCTCGCGGAAT 59.196 43.478 6.13 0.00 0.00 3.01
344 345 3.186909 CACAATTATGACTCTCGCGGAA 58.813 45.455 6.13 0.00 0.00 4.30
345 346 2.809446 CACAATTATGACTCTCGCGGA 58.191 47.619 6.13 1.01 0.00 5.54
346 347 1.258982 GCACAATTATGACTCTCGCGG 59.741 52.381 6.13 0.00 0.00 6.46
347 348 1.258982 GGCACAATTATGACTCTCGCG 59.741 52.381 0.00 0.00 0.00 5.87
348 349 2.555199 AGGCACAATTATGACTCTCGC 58.445 47.619 0.00 0.00 29.04 5.03
353 354 3.197766 TCCGAAGAGGCACAATTATGACT 59.802 43.478 0.00 0.00 42.22 3.41
354 355 3.531538 TCCGAAGAGGCACAATTATGAC 58.468 45.455 0.00 0.00 40.77 3.06
355 356 3.904800 TCCGAAGAGGCACAATTATGA 57.095 42.857 0.00 0.00 40.77 2.15
356 357 4.635765 TCTTTCCGAAGAGGCACAATTATG 59.364 41.667 0.00 0.00 36.99 1.90
357 358 4.843728 TCTTTCCGAAGAGGCACAATTAT 58.156 39.130 0.00 0.00 36.99 1.28
358 359 4.280436 TCTTTCCGAAGAGGCACAATTA 57.720 40.909 0.00 0.00 36.99 1.40
359 360 3.140325 TCTTTCCGAAGAGGCACAATT 57.860 42.857 0.00 0.00 36.99 2.32
360 361 2.859165 TCTTTCCGAAGAGGCACAAT 57.141 45.000 0.00 0.00 36.99 2.71
361 362 2.631160 TTCTTTCCGAAGAGGCACAA 57.369 45.000 0.00 0.00 42.55 3.33
362 363 2.631160 TTTCTTTCCGAAGAGGCACA 57.369 45.000 0.00 0.00 42.55 4.57
363 364 3.982576 TTTTTCTTTCCGAAGAGGCAC 57.017 42.857 0.00 0.00 42.55 5.01
383 384 9.394767 AGAAAATTAAACTGGAACATGCTTTTT 57.605 25.926 0.00 0.00 38.20 1.94
384 385 8.829612 CAGAAAATTAAACTGGAACATGCTTTT 58.170 29.630 0.00 0.00 38.20 2.27
385 386 8.369218 CAGAAAATTAAACTGGAACATGCTTT 57.631 30.769 0.00 0.00 38.20 3.51
386 387 7.951530 CAGAAAATTAAACTGGAACATGCTT 57.048 32.000 0.00 0.00 38.20 3.91
396 397 5.447624 AACGGACCCAGAAAATTAAACTG 57.552 39.130 0.00 0.00 0.00 3.16
397 398 6.474140 AAAACGGACCCAGAAAATTAAACT 57.526 33.333 0.00 0.00 0.00 2.66
398 399 8.821147 ATAAAAACGGACCCAGAAAATTAAAC 57.179 30.769 0.00 0.00 0.00 2.01
399 400 7.808856 CGATAAAAACGGACCCAGAAAATTAAA 59.191 33.333 0.00 0.00 0.00 1.52
400 401 7.040548 ACGATAAAAACGGACCCAGAAAATTAA 60.041 33.333 0.00 0.00 34.93 1.40
401 402 6.430616 ACGATAAAAACGGACCCAGAAAATTA 59.569 34.615 0.00 0.00 34.93 1.40
402 403 5.242171 ACGATAAAAACGGACCCAGAAAATT 59.758 36.000 0.00 0.00 34.93 1.82
403 404 4.763279 ACGATAAAAACGGACCCAGAAAAT 59.237 37.500 0.00 0.00 34.93 1.82
404 405 4.023878 CACGATAAAAACGGACCCAGAAAA 60.024 41.667 0.00 0.00 34.93 2.29
405 406 3.499157 CACGATAAAAACGGACCCAGAAA 59.501 43.478 0.00 0.00 34.93 2.52
406 407 3.068560 CACGATAAAAACGGACCCAGAA 58.931 45.455 0.00 0.00 34.93 3.02
407 408 2.299582 TCACGATAAAAACGGACCCAGA 59.700 45.455 0.00 0.00 34.93 3.86
408 409 2.690786 TCACGATAAAAACGGACCCAG 58.309 47.619 0.00 0.00 34.93 4.45
409 410 2.835580 TCACGATAAAAACGGACCCA 57.164 45.000 0.00 0.00 34.93 4.51
410 411 5.799681 TTTATCACGATAAAAACGGACCC 57.200 39.130 9.29 0.00 39.51 4.46
423 424 9.653287 ACTAGATCAATGAACTTTTTATCACGA 57.347 29.630 0.00 0.00 0.00 4.35
431 432 9.784531 TCTTCAGAACTAGATCAATGAACTTTT 57.215 29.630 0.00 0.00 0.00 2.27
432 433 9.956640 ATCTTCAGAACTAGATCAATGAACTTT 57.043 29.630 0.00 0.00 0.00 2.66
433 434 9.598517 GATCTTCAGAACTAGATCAATGAACTT 57.401 33.333 0.00 0.00 43.94 2.66
434 435 8.980596 AGATCTTCAGAACTAGATCAATGAACT 58.019 33.333 11.59 0.00 45.90 3.01
435 436 9.248291 GAGATCTTCAGAACTAGATCAATGAAC 57.752 37.037 11.59 0.00 45.90 3.18
436 437 8.134261 CGAGATCTTCAGAACTAGATCAATGAA 58.866 37.037 11.59 0.68 45.90 2.57
437 438 7.500559 TCGAGATCTTCAGAACTAGATCAATGA 59.499 37.037 11.59 0.00 45.90 2.57
438 439 7.591057 GTCGAGATCTTCAGAACTAGATCAATG 59.409 40.741 11.59 0.00 45.90 2.82
439 440 7.519809 CGTCGAGATCTTCAGAACTAGATCAAT 60.520 40.741 11.59 0.00 45.90 2.57
440 441 6.238239 CGTCGAGATCTTCAGAACTAGATCAA 60.238 42.308 11.59 0.00 45.90 2.57
441 442 5.235401 CGTCGAGATCTTCAGAACTAGATCA 59.765 44.000 11.59 0.00 45.90 2.92
442 443 5.675970 CGTCGAGATCTTCAGAACTAGATC 58.324 45.833 0.00 0.00 44.54 2.75
443 444 4.024387 GCGTCGAGATCTTCAGAACTAGAT 60.024 45.833 0.00 0.00 33.04 1.98
444 445 3.310227 GCGTCGAGATCTTCAGAACTAGA 59.690 47.826 0.00 0.00 0.00 2.43
445 446 3.613563 GCGTCGAGATCTTCAGAACTAG 58.386 50.000 0.00 0.00 0.00 2.57
446 447 2.030579 CGCGTCGAGATCTTCAGAACTA 59.969 50.000 0.00 0.00 0.00 2.24
447 448 1.202087 CGCGTCGAGATCTTCAGAACT 60.202 52.381 0.00 0.00 0.00 3.01
448 449 1.184349 CGCGTCGAGATCTTCAGAAC 58.816 55.000 0.00 0.00 0.00 3.01
449 450 1.084289 TCGCGTCGAGATCTTCAGAA 58.916 50.000 5.77 0.00 0.00 3.02
450 451 0.374063 GTCGCGTCGAGATCTTCAGA 59.626 55.000 5.77 0.00 36.23 3.27
451 452 0.921662 CGTCGCGTCGAGATCTTCAG 60.922 60.000 20.81 0.00 36.23 3.02
452 453 1.060465 CGTCGCGTCGAGATCTTCA 59.940 57.895 20.81 0.00 36.23 3.02
453 454 1.651730 CCGTCGCGTCGAGATCTTC 60.652 63.158 26.46 0.00 36.23 2.87
454 455 2.396955 ACCGTCGCGTCGAGATCTT 61.397 57.895 26.46 1.24 36.23 2.40
455 456 2.818714 ACCGTCGCGTCGAGATCT 60.819 61.111 26.46 0.00 36.23 2.75
456 457 2.573341 TTCACCGTCGCGTCGAGATC 62.573 60.000 26.46 0.00 36.23 2.75
457 458 2.191354 TTTCACCGTCGCGTCGAGAT 62.191 55.000 26.46 9.12 36.23 2.75
458 459 2.391238 TTTTCACCGTCGCGTCGAGA 62.391 55.000 26.46 19.52 36.23 4.04
459 460 2.012414 TTTTCACCGTCGCGTCGAG 61.012 57.895 26.46 17.89 36.23 4.04
460 461 2.025870 TTTTCACCGTCGCGTCGA 59.974 55.556 26.46 4.34 0.00 4.20
461 462 2.166985 GTTTTCACCGTCGCGTCG 59.833 61.111 18.65 18.65 0.00 5.12
462 463 1.611592 ATCGTTTTCACCGTCGCGTC 61.612 55.000 5.77 0.00 0.00 5.19
463 464 1.216941 AATCGTTTTCACCGTCGCGT 61.217 50.000 5.77 0.00 0.00 6.01
464 465 0.515717 GAATCGTTTTCACCGTCGCG 60.516 55.000 0.00 0.00 0.00 5.87
465 466 0.509499 TGAATCGTTTTCACCGTCGC 59.491 50.000 0.43 0.00 0.00 5.19
466 467 2.473609 TCTTGAATCGTTTTCACCGTCG 59.526 45.455 3.58 0.00 0.00 5.12
467 468 4.663636 ATCTTGAATCGTTTTCACCGTC 57.336 40.909 3.58 0.00 0.00 4.79
468 469 5.008217 TCAAATCTTGAATCGTTTTCACCGT 59.992 36.000 3.58 0.00 36.59 4.83
469 470 5.448438 TCAAATCTTGAATCGTTTTCACCG 58.552 37.500 3.58 0.00 36.59 4.94
481 482 7.950512 TCTTAAACCATGCTTCAAATCTTGAA 58.049 30.769 2.12 2.12 46.68 2.69
482 483 7.448161 TCTCTTAAACCATGCTTCAAATCTTGA 59.552 33.333 0.00 0.00 38.04 3.02
483 484 7.596494 TCTCTTAAACCATGCTTCAAATCTTG 58.404 34.615 0.00 0.00 0.00 3.02
484 485 7.765695 TCTCTTAAACCATGCTTCAAATCTT 57.234 32.000 0.00 0.00 0.00 2.40
485 486 7.951347 ATCTCTTAAACCATGCTTCAAATCT 57.049 32.000 0.00 0.00 0.00 2.40
521 522 9.603298 GTTTTCCTTTTCGTAGATTCGTTTATT 57.397 29.630 0.00 0.00 35.04 1.40
522 523 8.996271 AGTTTTCCTTTTCGTAGATTCGTTTAT 58.004 29.630 0.00 0.00 35.04 1.40
523 524 8.369218 AGTTTTCCTTTTCGTAGATTCGTTTA 57.631 30.769 0.00 0.00 35.04 2.01
524 525 7.011669 TGAGTTTTCCTTTTCGTAGATTCGTTT 59.988 33.333 0.00 0.00 35.04 3.60
525 526 6.480981 TGAGTTTTCCTTTTCGTAGATTCGTT 59.519 34.615 0.00 0.00 35.04 3.85
526 527 5.987347 TGAGTTTTCCTTTTCGTAGATTCGT 59.013 36.000 0.00 0.00 35.04 3.85
527 528 6.073980 TGTGAGTTTTCCTTTTCGTAGATTCG 60.074 38.462 0.00 0.00 35.04 3.34
528 529 7.186021 TGTGAGTTTTCCTTTTCGTAGATTC 57.814 36.000 0.00 0.00 35.04 2.52
529 530 6.204882 CCTGTGAGTTTTCCTTTTCGTAGATT 59.795 38.462 0.00 0.00 35.04 2.40
530 531 5.701290 CCTGTGAGTTTTCCTTTTCGTAGAT 59.299 40.000 0.00 0.00 35.04 1.98
531 532 5.054477 CCTGTGAGTTTTCCTTTTCGTAGA 58.946 41.667 0.00 0.00 0.00 2.59
532 533 4.814771 ACCTGTGAGTTTTCCTTTTCGTAG 59.185 41.667 0.00 0.00 0.00 3.51
533 534 4.773013 ACCTGTGAGTTTTCCTTTTCGTA 58.227 39.130 0.00 0.00 0.00 3.43
534 535 3.617284 ACCTGTGAGTTTTCCTTTTCGT 58.383 40.909 0.00 0.00 0.00 3.85
535 536 4.351192 CAACCTGTGAGTTTTCCTTTTCG 58.649 43.478 0.00 0.00 0.00 3.46
536 537 4.112634 GCAACCTGTGAGTTTTCCTTTTC 58.887 43.478 0.00 0.00 0.00 2.29
537 538 3.428862 CGCAACCTGTGAGTTTTCCTTTT 60.429 43.478 0.00 0.00 0.00 2.27
538 539 2.099098 CGCAACCTGTGAGTTTTCCTTT 59.901 45.455 0.00 0.00 0.00 3.11
539 540 1.676006 CGCAACCTGTGAGTTTTCCTT 59.324 47.619 0.00 0.00 0.00 3.36
540 541 1.134220 TCGCAACCTGTGAGTTTTCCT 60.134 47.619 0.00 0.00 31.05 3.36
541 542 1.305201 TCGCAACCTGTGAGTTTTCC 58.695 50.000 0.00 0.00 31.05 3.13
542 543 4.154195 ACATATCGCAACCTGTGAGTTTTC 59.846 41.667 0.00 0.00 40.54 2.29
543 544 4.072131 ACATATCGCAACCTGTGAGTTTT 58.928 39.130 0.00 0.00 40.54 2.43
544 545 3.436704 CACATATCGCAACCTGTGAGTTT 59.563 43.478 0.00 0.00 40.54 2.66
545 546 3.002791 CACATATCGCAACCTGTGAGTT 58.997 45.455 0.00 0.00 40.54 3.01
546 547 2.621338 CACATATCGCAACCTGTGAGT 58.379 47.619 0.00 0.00 40.54 3.41
547 548 1.935873 CCACATATCGCAACCTGTGAG 59.064 52.381 7.75 0.00 40.54 3.51
548 549 2.011548 GCCACATATCGCAACCTGTGA 61.012 52.381 7.75 0.00 41.11 3.58
549 550 0.378257 GCCACATATCGCAACCTGTG 59.622 55.000 0.00 0.00 38.92 3.66
550 551 0.035534 TGCCACATATCGCAACCTGT 60.036 50.000 0.00 0.00 30.46 4.00
551 552 0.659427 CTGCCACATATCGCAACCTG 59.341 55.000 0.00 0.00 33.87 4.00
552 553 0.464373 CCTGCCACATATCGCAACCT 60.464 55.000 0.00 0.00 33.87 3.50
553 554 0.748005 ACCTGCCACATATCGCAACC 60.748 55.000 0.00 0.00 33.87 3.77
554 555 0.378257 CACCTGCCACATATCGCAAC 59.622 55.000 0.00 0.00 33.87 4.17
555 556 0.251634 TCACCTGCCACATATCGCAA 59.748 50.000 0.00 0.00 33.87 4.85
556 557 0.251634 TTCACCTGCCACATATCGCA 59.748 50.000 0.00 0.00 0.00 5.10
557 558 1.378531 TTTCACCTGCCACATATCGC 58.621 50.000 0.00 0.00 0.00 4.58
558 559 4.637483 AATTTTCACCTGCCACATATCG 57.363 40.909 0.00 0.00 0.00 2.92
559 560 7.516198 AGATAATTTTCACCTGCCACATATC 57.484 36.000 0.00 0.00 0.00 1.63
560 561 7.902920 AAGATAATTTTCACCTGCCACATAT 57.097 32.000 0.00 0.00 0.00 1.78
561 562 7.546358 CAAAGATAATTTTCACCTGCCACATA 58.454 34.615 0.00 0.00 0.00 2.29
562 563 6.400568 CAAAGATAATTTTCACCTGCCACAT 58.599 36.000 0.00 0.00 0.00 3.21
563 564 5.782047 CAAAGATAATTTTCACCTGCCACA 58.218 37.500 0.00 0.00 0.00 4.17
564 565 4.627035 GCAAAGATAATTTTCACCTGCCAC 59.373 41.667 0.00 0.00 0.00 5.01
565 566 4.282957 TGCAAAGATAATTTTCACCTGCCA 59.717 37.500 11.48 2.36 0.00 4.92
566 567 4.819769 TGCAAAGATAATTTTCACCTGCC 58.180 39.130 11.48 0.00 0.00 4.85
567 568 6.783892 TTTGCAAAGATAATTTTCACCTGC 57.216 33.333 8.05 4.78 0.00 4.85
568 569 8.829612 ACTTTTTGCAAAGATAATTTTCACCTG 58.170 29.630 12.41 0.00 41.97 4.00
569 570 8.962884 ACTTTTTGCAAAGATAATTTTCACCT 57.037 26.923 12.41 0.00 41.97 4.00
576 577 9.696917 CAAGGAGTACTTTTTGCAAAGATAATT 57.303 29.630 12.41 1.41 41.97 1.40
577 578 9.077885 TCAAGGAGTACTTTTTGCAAAGATAAT 57.922 29.630 12.41 5.63 41.97 1.28
578 579 8.458573 TCAAGGAGTACTTTTTGCAAAGATAA 57.541 30.769 12.41 3.32 41.97 1.75
579 580 8.635765 ATCAAGGAGTACTTTTTGCAAAGATA 57.364 30.769 12.41 3.72 41.97 1.98
580 581 6.959639 TCAAGGAGTACTTTTTGCAAAGAT 57.040 33.333 12.41 4.69 41.97 2.40
581 582 6.959639 ATCAAGGAGTACTTTTTGCAAAGA 57.040 33.333 12.41 7.13 41.97 2.52
582 583 9.696917 ATTAATCAAGGAGTACTTTTTGCAAAG 57.303 29.630 12.41 4.16 44.57 2.77
594 595 9.542462 CCGAAATCACTAATTAATCAAGGAGTA 57.458 33.333 0.00 0.00 0.00 2.59
595 596 8.265055 TCCGAAATCACTAATTAATCAAGGAGT 58.735 33.333 0.00 0.00 0.00 3.85
596 597 8.662781 TCCGAAATCACTAATTAATCAAGGAG 57.337 34.615 0.00 0.00 0.00 3.69
597 598 9.109393 CTTCCGAAATCACTAATTAATCAAGGA 57.891 33.333 0.00 0.00 0.00 3.36
598 599 9.109393 TCTTCCGAAATCACTAATTAATCAAGG 57.891 33.333 0.00 0.00 0.00 3.61
602 603 9.798885 CGATTCTTCCGAAATCACTAATTAATC 57.201 33.333 0.00 0.00 31.91 1.75
603 604 9.542462 TCGATTCTTCCGAAATCACTAATTAAT 57.458 29.630 0.00 0.00 32.64 1.40
604 605 8.936070 TCGATTCTTCCGAAATCACTAATTAA 57.064 30.769 0.00 0.00 32.64 1.40
605 606 8.936070 TTCGATTCTTCCGAAATCACTAATTA 57.064 30.769 0.00 0.00 42.18 1.40
606 607 7.843490 TTCGATTCTTCCGAAATCACTAATT 57.157 32.000 0.00 0.00 42.18 1.40
607 608 7.843490 TTTCGATTCTTCCGAAATCACTAAT 57.157 32.000 6.60 0.00 46.77 1.73
616 617 3.071479 CAGGGTTTTCGATTCTTCCGAA 58.929 45.455 0.00 0.00 43.24 4.30
617 618 2.695359 CAGGGTTTTCGATTCTTCCGA 58.305 47.619 0.00 0.00 0.00 4.55
618 619 1.130561 GCAGGGTTTTCGATTCTTCCG 59.869 52.381 0.00 0.00 0.00 4.30
619 620 1.472878 GGCAGGGTTTTCGATTCTTCC 59.527 52.381 0.00 0.00 0.00 3.46
620 621 2.420372 GAGGCAGGGTTTTCGATTCTTC 59.580 50.000 0.00 0.00 0.00 2.87
621 622 2.437413 GAGGCAGGGTTTTCGATTCTT 58.563 47.619 0.00 0.00 0.00 2.52
622 623 1.676014 CGAGGCAGGGTTTTCGATTCT 60.676 52.381 0.00 0.00 35.19 2.40
623 624 0.727398 CGAGGCAGGGTTTTCGATTC 59.273 55.000 0.00 0.00 35.19 2.52
624 625 0.323629 TCGAGGCAGGGTTTTCGATT 59.676 50.000 0.00 0.00 37.18 3.34
625 626 0.323629 TTCGAGGCAGGGTTTTCGAT 59.676 50.000 0.00 0.00 41.14 3.59
626 627 0.601841 GTTCGAGGCAGGGTTTTCGA 60.602 55.000 0.00 0.00 39.97 3.71
627 628 0.602905 AGTTCGAGGCAGGGTTTTCG 60.603 55.000 0.00 0.00 34.56 3.46
628 629 0.875059 CAGTTCGAGGCAGGGTTTTC 59.125 55.000 0.00 0.00 0.00 2.29
629 630 0.537371 CCAGTTCGAGGCAGGGTTTT 60.537 55.000 0.00 0.00 0.00 2.43
630 631 1.073199 CCAGTTCGAGGCAGGGTTT 59.927 57.895 0.00 0.00 0.00 3.27
631 632 2.750350 CCAGTTCGAGGCAGGGTT 59.250 61.111 0.00 0.00 0.00 4.11
632 633 3.322466 CCCAGTTCGAGGCAGGGT 61.322 66.667 10.17 0.00 34.75 4.34
662 663 7.381323 CCTTCTTCTTTTCCTTTGCATGTAAT 58.619 34.615 0.00 0.00 0.00 1.89
663 664 6.239289 CCCTTCTTCTTTTCCTTTGCATGTAA 60.239 38.462 0.00 0.00 0.00 2.41
664 665 5.243730 CCCTTCTTCTTTTCCTTTGCATGTA 59.756 40.000 0.00 0.00 0.00 2.29
674 675 1.618837 GTTGGGCCCTTCTTCTTTTCC 59.381 52.381 25.70 0.00 0.00 3.13
707 708 3.057245 GGGAGAAACTGCTGGATTTGTTC 60.057 47.826 0.00 0.00 0.00 3.18
1131 1151 2.028484 GTGGCGTTCTCGTGGTCA 59.972 61.111 0.00 0.00 39.49 4.02
1488 1508 2.741092 GTGAAGCACAGGACGGGA 59.259 61.111 0.00 0.00 34.08 5.14
1743 1763 2.353958 CTGTGGCCAGGCATCAGT 59.646 61.111 15.19 0.00 34.90 3.41
1973 1993 2.231380 ACGGACCCCTTGCTCCAAT 61.231 57.895 0.00 0.00 0.00 3.16
2063 2083 0.888619 TAGTGTCAACTCTCCGGCAG 59.111 55.000 0.00 0.00 37.88 4.85
2241 2261 2.106511 GGCTGGGCTGTAATATCCTTCA 59.893 50.000 0.00 0.00 0.00 3.02
2368 2388 8.782533 AGAAATACTTGCTTAACAAAAGAACG 57.217 30.769 0.00 0.00 37.96 3.95
2450 2470 5.471556 ACTCAATTTGCATTCATGGTGAA 57.528 34.783 0.00 0.00 41.09 3.18
2459 2479 7.002879 AGGATATGAGCTACTCAATTTGCATT 58.997 34.615 0.74 0.00 44.04 3.56
2656 2677 5.220931 CCCAGACAGTATAATTGCTTTCAGC 60.221 44.000 0.00 0.00 42.82 4.26
2740 2761 9.342308 TGACATTATCCAAATATTTCAGAGGTC 57.658 33.333 0.00 6.32 0.00 3.85
2777 2798 5.233957 TGTGTTTTGCTATGATCGAATGG 57.766 39.130 0.00 0.00 0.00 3.16
2806 2827 1.457823 TTTGCCAGTTGCTCAGCCAG 61.458 55.000 0.00 0.00 42.00 4.85
2807 2828 1.042003 TTTTGCCAGTTGCTCAGCCA 61.042 50.000 0.00 0.00 42.00 4.75
2811 2832 3.573538 ACATACATTTTGCCAGTTGCTCA 59.426 39.130 0.00 0.00 42.00 4.26
2864 2885 6.347859 AGAAGTTTCTGTATCCGGATATCC 57.652 41.667 26.46 15.32 35.89 2.59
2908 2932 4.327680 AGGCAACAAAAAGAGCTACTAGG 58.672 43.478 0.00 0.00 41.41 3.02
2960 2984 1.401905 GAAATCCCCACGATTGTCAGC 59.598 52.381 0.00 0.00 40.47 4.26
3019 3043 8.469309 ACAGCAAACATAAAAGCATCCTATAT 57.531 30.769 0.00 0.00 0.00 0.86
3041 3065 5.520288 ACAACACTAGAAATAGCGCATACAG 59.480 40.000 11.47 0.00 0.00 2.74
3056 3080 5.291128 AGTTTCTTCAACGTCACAACACTAG 59.709 40.000 0.00 0.00 40.75 2.57
3071 3095 9.645059 CACTCTTATGTTCATAGAGTTTCTTCA 57.355 33.333 15.32 0.00 44.58 3.02
3115 3139 2.570752 AGACAGTGTGAGATGAATGCCT 59.429 45.455 0.00 0.00 0.00 4.75
3228 3252 1.272147 GGCTTGAGTTGGGTTCTGGAT 60.272 52.381 0.00 0.00 0.00 3.41
3236 3260 1.001641 CAGGGAGGCTTGAGTTGGG 60.002 63.158 0.00 0.00 0.00 4.12
3290 3314 2.094957 GTGGAGAAGACGAGAACAGAGG 60.095 54.545 0.00 0.00 0.00 3.69
3308 3332 1.673665 GGGAGCAGCAGAGTTGTGG 60.674 63.158 0.00 0.00 0.00 4.17
3347 3371 3.445450 TCAAAGGTAGCAGCAAAACACAA 59.555 39.130 0.00 0.00 0.00 3.33
3374 3398 9.855021 AAAGCTAAGCAAATTATAAAACGACAT 57.145 25.926 0.00 0.00 0.00 3.06
3376 3400 9.556030 AGAAAGCTAAGCAAATTATAAAACGAC 57.444 29.630 0.00 0.00 0.00 4.34
3390 3414 5.364778 TCAACTAACACAGAAAGCTAAGCA 58.635 37.500 0.00 0.00 0.00 3.91
3452 3476 3.181476 TGAGAGAAAGCAAACCAAAAGGC 60.181 43.478 0.00 0.00 0.00 4.35
3515 3541 7.391148 ACAGATTATTTTCACGCCACTTAAT 57.609 32.000 0.00 0.00 0.00 1.40
3619 3647 1.268794 CCACGAGCCATAAGAGAGACG 60.269 57.143 0.00 0.00 0.00 4.18
3644 3672 4.830826 AAGTTCATTCCCTTTTCGACAC 57.169 40.909 0.00 0.00 0.00 3.67
3737 3765 4.651045 GCCTCCCAAATGAATAGGTGAAAT 59.349 41.667 0.00 0.00 0.00 2.17
3843 3871 7.474398 TTGTCAAAAATTGCGATTGATTTCA 57.526 28.000 0.00 0.00 35.70 2.69
3856 3884 8.306761 GTCTACCATCATCCTTTGTCAAAAATT 58.693 33.333 0.00 0.00 0.00 1.82
3945 6175 3.327757 TGGAGTCAGCACCTTTATCTTGT 59.672 43.478 0.00 0.00 0.00 3.16
3988 6220 1.207089 CATTGGGGTACGAGAAGCAGA 59.793 52.381 0.00 0.00 0.00 4.26
4038 6278 1.613630 TGCCACCCTCTTCCTCCTC 60.614 63.158 0.00 0.00 0.00 3.71
4039 6279 1.614824 CTGCCACCCTCTTCCTCCT 60.615 63.158 0.00 0.00 0.00 3.69
4040 6280 2.993853 CTGCCACCCTCTTCCTCC 59.006 66.667 0.00 0.00 0.00 4.30
4106 6357 9.052759 ACGTATAAGAAAATCTCGCCAATATTT 57.947 29.630 0.00 0.00 0.00 1.40
4107 6358 8.495949 CACGTATAAGAAAATCTCGCCAATATT 58.504 33.333 0.00 0.00 0.00 1.28
4129 6382 5.492895 TCAATTCACCATAACCATACACGT 58.507 37.500 0.00 0.00 0.00 4.49
4153 6406 1.153745 CTCACTACCACCTGCGCTC 60.154 63.158 9.73 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.