Multiple sequence alignment - TraesCS4D01G287800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G287800 chr4D 100.000 2360 0 0 1 2360 459302528 459300169 0.000000e+00 4359.0
1 TraesCS4D01G287800 chr4D 90.526 190 16 2 2171 2359 418391792 418391604 1.400000e-62 250.0
2 TraesCS4D01G287800 chr4D 90.761 184 16 1 2171 2353 62483486 62483669 6.520000e-61 244.0
3 TraesCS4D01G287800 chr4D 90.000 190 18 1 2171 2359 226385248 226385059 6.520000e-61 244.0
4 TraesCS4D01G287800 chr4B 93.876 1437 60 10 556 1985 573521404 573519989 0.000000e+00 2141.0
5 TraesCS4D01G287800 chr4B 93.532 201 4 2 1977 2168 573510469 573510269 8.250000e-75 291.0
6 TraesCS4D01G287800 chr4B 89.394 198 19 2 2164 2359 586244380 586244183 5.040000e-62 248.0
7 TraesCS4D01G287800 chr4A 92.191 1319 67 18 553 1859 9483843 9485137 0.000000e+00 1832.0
8 TraesCS4D01G287800 chr4A 93.275 342 14 2 1838 2170 9485315 9485656 1.630000e-136 496.0
9 TraesCS4D01G287800 chr4A 82.946 516 67 12 12 519 633377597 633378099 1.660000e-121 446.0
10 TraesCS4D01G287800 chr4A 85.151 431 53 9 10 435 3123707 3124131 4.660000e-117 431.0
11 TraesCS4D01G287800 chr4A 89.617 183 19 0 1 183 36139470 36139288 1.410000e-57 233.0
12 TraesCS4D01G287800 chr3D 84.860 535 62 10 1 519 283615546 283615015 2.690000e-144 521.0
13 TraesCS4D01G287800 chr3A 84.720 517 68 7 9 517 624719730 624719217 7.530000e-140 507.0
14 TraesCS4D01G287800 chr3A 86.667 195 15 2 1 184 428567728 428567922 3.070000e-49 206.0
15 TraesCS4D01G287800 chr2D 83.829 538 66 12 1 519 423282059 423282594 2.110000e-135 492.0
16 TraesCS4D01G287800 chr2D 90.052 191 18 1 2171 2360 565521445 565521255 1.810000e-61 246.0
17 TraesCS4D01G287800 chrUn 88.293 410 36 9 1 405 61036351 61035949 4.560000e-132 481.0
18 TraesCS4D01G287800 chr6D 82.873 543 74 11 1 526 111625774 111626314 9.870000e-129 470.0
19 TraesCS4D01G287800 chr6D 88.102 353 32 8 94 439 454784661 454784312 6.070000e-111 411.0
20 TraesCS4D01G287800 chr6D 90.374 187 17 1 2174 2359 285810086 285809900 6.520000e-61 244.0
21 TraesCS4D01G287800 chr6B 82.649 536 74 14 9 527 200782788 200783321 7.690000e-125 457.0
22 TraesCS4D01G287800 chr1B 79.592 490 76 11 1 473 606582514 606582996 1.750000e-86 329.0
23 TraesCS4D01G287800 chr7D 90.052 191 17 2 2171 2359 82851433 82851243 1.810000e-61 246.0
24 TraesCS4D01G287800 chr3B 90.811 185 15 2 2171 2353 820354775 820354959 1.810000e-61 246.0
25 TraesCS4D01G287800 chr5D 90.000 190 17 2 2165 2353 532009217 532009405 6.520000e-61 244.0
26 TraesCS4D01G287800 chr2B 86.735 196 17 1 1 187 77247343 77247148 2.380000e-50 209.0
27 TraesCS4D01G287800 chr5B 87.166 187 15 2 3 180 412265696 412265882 1.110000e-48 204.0
28 TraesCS4D01G287800 chr2A 86.413 184 16 6 9 183 618986877 618986694 2.390000e-45 193.0
29 TraesCS4D01G287800 chr2A 89.362 47 4 1 1840 1886 754174718 754174673 9.110000e-05 58.4
30 TraesCS4D01G287800 chr6A 82.979 94 11 3 1764 1857 61671020 61670932 1.940000e-11 80.5
31 TraesCS4D01G287800 chr7B 75.974 154 23 9 1712 1857 706362079 706361932 1.510000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G287800 chr4D 459300169 459302528 2359 True 4359 4359 100.000 1 2360 1 chr4D.!!$R3 2359
1 TraesCS4D01G287800 chr4B 573519989 573521404 1415 True 2141 2141 93.876 556 1985 1 chr4B.!!$R2 1429
2 TraesCS4D01G287800 chr4A 9483843 9485656 1813 False 1164 1832 92.733 553 2170 2 chr4A.!!$F3 1617
3 TraesCS4D01G287800 chr4A 633377597 633378099 502 False 446 446 82.946 12 519 1 chr4A.!!$F2 507
4 TraesCS4D01G287800 chr3D 283615015 283615546 531 True 521 521 84.860 1 519 1 chr3D.!!$R1 518
5 TraesCS4D01G287800 chr3A 624719217 624719730 513 True 507 507 84.720 9 517 1 chr3A.!!$R1 508
6 TraesCS4D01G287800 chr2D 423282059 423282594 535 False 492 492 83.829 1 519 1 chr2D.!!$F1 518
7 TraesCS4D01G287800 chr6D 111625774 111626314 540 False 470 470 82.873 1 526 1 chr6D.!!$F1 525
8 TraesCS4D01G287800 chr6B 200782788 200783321 533 False 457 457 82.649 9 527 1 chr6B.!!$F1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 258 0.887933 ATGTGCCGGATTGTTGAACC 59.112 50.0 5.05 0.0 0.0 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2224 2474 0.108138 GCGAGCACCAGGAGTTGTAT 60.108 55.0 0.0 0.0 0.0 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 3.304726 GCTACATCGTCATCTCCGATTCA 60.305 47.826 0.00 0.00 42.75 2.57
84 85 3.646946 ACATCGTCATCTCCGATTCATG 58.353 45.455 0.00 0.00 42.75 3.07
89 99 1.000171 TCATCTCCGATTCATGCTCCG 60.000 52.381 0.00 0.00 0.00 4.63
90 100 1.000171 CATCTCCGATTCATGCTCCGA 60.000 52.381 0.00 0.00 0.00 4.55
143 153 1.464376 GGACTCCTATAGCTGCGCCA 61.464 60.000 4.18 0.00 0.00 5.69
247 258 0.887933 ATGTGCCGGATTGTTGAACC 59.112 50.000 5.05 0.00 0.00 3.62
258 269 4.454504 GGATTGTTGAACCGTGTGACTTAT 59.545 41.667 0.00 0.00 0.00 1.73
259 270 5.640357 GGATTGTTGAACCGTGTGACTTATA 59.360 40.000 0.00 0.00 0.00 0.98
287 301 6.306356 CGTTTGGTGATCTTTTGATGATGTTC 59.694 38.462 0.00 0.00 39.67 3.18
298 312 9.844790 TCTTTTGATGATGTTCATGTGAATTAC 57.155 29.630 0.00 0.00 37.20 1.89
347 368 9.743057 TGTTTTCTATTGATTTTGATCGTTTGT 57.257 25.926 0.00 0.00 0.00 2.83
409 430 4.022589 GGGTTCGGAATATGAGATACGTGA 60.023 45.833 0.00 0.00 0.00 4.35
439 460 2.092429 GCATGGATTTAGGGAGTGTCCA 60.092 50.000 0.00 0.00 42.62 4.02
445 466 5.222233 TGGATTTAGGGAGTGTCCAATCAAA 60.222 40.000 6.77 0.00 38.64 2.69
448 469 3.884037 AGGGAGTGTCCAATCAAAGTT 57.116 42.857 0.00 0.00 38.64 2.66
520 544 1.065701 CCGCGTGTAGATGCTCTTACT 59.934 52.381 4.92 0.00 31.21 2.24
527 551 6.183360 GCGTGTAGATGCTCTTACTTTGATTT 60.183 38.462 0.00 0.00 0.00 2.17
528 552 7.010183 GCGTGTAGATGCTCTTACTTTGATTTA 59.990 37.037 0.00 0.00 0.00 1.40
529 553 8.321716 CGTGTAGATGCTCTTACTTTGATTTAC 58.678 37.037 0.00 0.00 0.00 2.01
530 554 8.321716 GTGTAGATGCTCTTACTTTGATTTACG 58.678 37.037 0.00 0.00 0.00 3.18
531 555 8.248253 TGTAGATGCTCTTACTTTGATTTACGA 58.752 33.333 0.00 0.00 0.00 3.43
532 556 9.084164 GTAGATGCTCTTACTTTGATTTACGAA 57.916 33.333 0.00 0.00 0.00 3.85
533 557 8.190888 AGATGCTCTTACTTTGATTTACGAAG 57.809 34.615 0.00 0.00 43.57 3.79
534 558 8.035394 AGATGCTCTTACTTTGATTTACGAAGA 58.965 33.333 0.00 0.00 41.25 2.87
535 559 7.956420 TGCTCTTACTTTGATTTACGAAGAA 57.044 32.000 0.00 0.00 41.25 2.52
536 560 8.373048 TGCTCTTACTTTGATTTACGAAGAAA 57.627 30.769 0.00 0.00 41.25 2.52
537 561 8.832521 TGCTCTTACTTTGATTTACGAAGAAAA 58.167 29.630 0.00 0.00 41.25 2.29
538 562 9.659830 GCTCTTACTTTGATTTACGAAGAAAAA 57.340 29.630 0.00 0.00 41.25 1.94
553 577 3.996614 AAAAATGGGAGCGGACGG 58.003 55.556 0.00 0.00 0.00 4.79
554 578 2.340328 AAAAATGGGAGCGGACGGC 61.340 57.895 0.00 0.00 44.05 5.68
590 614 2.356125 GCCCTACAGAGCCAAGAAATCA 60.356 50.000 0.00 0.00 0.00 2.57
791 824 1.471676 GCACGATCCGGAGAAAGTGAT 60.472 52.381 25.51 2.88 36.27 3.06
802 835 2.349886 GAGAAAGTGATCACGCATCCAC 59.650 50.000 19.85 11.94 36.20 4.02
876 913 2.202946 GGCGCTAGCTTGGGACTC 60.203 66.667 16.03 1.38 44.37 3.36
882 919 2.835701 CTAGCTTGGGACTCGCGCAA 62.836 60.000 8.75 0.00 45.82 4.85
1408 1445 2.733593 GTGAGTGTGACGGTCCGC 60.734 66.667 12.28 4.89 0.00 5.54
1448 1485 5.762825 ACTCCGCTGAATAATCTACGTTA 57.237 39.130 0.00 0.00 0.00 3.18
1452 1489 4.500205 CCGCTGAATAATCTACGTTACCCA 60.500 45.833 0.00 0.00 0.00 4.51
1548 1585 0.321671 ATACCTGTCTGCGTGCAGTT 59.678 50.000 20.33 5.17 43.96 3.16
1801 1843 5.185454 TGATAAGCATGTCAAATCCGTCTT 58.815 37.500 0.00 0.00 0.00 3.01
2098 2348 2.420129 CGATCTTTGGGGGACTGGTAAG 60.420 54.545 0.00 0.00 0.00 2.34
2127 2377 3.194861 CATCCGGCTAAAATCGTTCTCA 58.805 45.455 0.00 0.00 0.00 3.27
2132 2382 4.500887 CCGGCTAAAATCGTTCTCATCCTA 60.501 45.833 0.00 0.00 0.00 2.94
2137 2387 8.406297 GGCTAAAATCGTTCTCATCCTAAAAAT 58.594 33.333 0.00 0.00 0.00 1.82
2144 2394 4.437682 TCTCATCCTAAAAATGCCCGAT 57.562 40.909 0.00 0.00 0.00 4.18
2175 2425 3.823281 TCGAAGACTAACACCAACCAA 57.177 42.857 0.00 0.00 0.00 3.67
2176 2426 3.460103 TCGAAGACTAACACCAACCAAC 58.540 45.455 0.00 0.00 0.00 3.77
2177 2427 3.118702 TCGAAGACTAACACCAACCAACA 60.119 43.478 0.00 0.00 0.00 3.33
2178 2428 3.813166 CGAAGACTAACACCAACCAACAT 59.187 43.478 0.00 0.00 0.00 2.71
2179 2429 4.319477 CGAAGACTAACACCAACCAACATG 60.319 45.833 0.00 0.00 0.00 3.21
2180 2430 4.164843 AGACTAACACCAACCAACATGT 57.835 40.909 0.00 0.00 0.00 3.21
2181 2431 3.882888 AGACTAACACCAACCAACATGTG 59.117 43.478 0.00 0.00 34.92 3.21
2195 2445 4.380843 AACATGTGGTTGGATGGTTAGA 57.619 40.909 0.00 0.00 38.60 2.10
2196 2446 3.955471 ACATGTGGTTGGATGGTTAGAG 58.045 45.455 0.00 0.00 0.00 2.43
2197 2447 3.587061 ACATGTGGTTGGATGGTTAGAGA 59.413 43.478 0.00 0.00 0.00 3.10
2198 2448 3.981071 TGTGGTTGGATGGTTAGAGAG 57.019 47.619 0.00 0.00 0.00 3.20
2199 2449 3.516586 TGTGGTTGGATGGTTAGAGAGA 58.483 45.455 0.00 0.00 0.00 3.10
2200 2450 3.260884 TGTGGTTGGATGGTTAGAGAGAC 59.739 47.826 0.00 0.00 0.00 3.36
2201 2451 3.260884 GTGGTTGGATGGTTAGAGAGACA 59.739 47.826 0.00 0.00 0.00 3.41
2202 2452 3.515502 TGGTTGGATGGTTAGAGAGACAG 59.484 47.826 0.00 0.00 0.00 3.51
2203 2453 3.515901 GGTTGGATGGTTAGAGAGACAGT 59.484 47.826 0.00 0.00 0.00 3.55
2204 2454 4.499183 GTTGGATGGTTAGAGAGACAGTG 58.501 47.826 0.00 0.00 0.00 3.66
2205 2455 3.099905 TGGATGGTTAGAGAGACAGTGG 58.900 50.000 0.00 0.00 0.00 4.00
2206 2456 3.100671 GGATGGTTAGAGAGACAGTGGT 58.899 50.000 0.00 0.00 0.00 4.16
2207 2457 4.264217 TGGATGGTTAGAGAGACAGTGGTA 60.264 45.833 0.00 0.00 0.00 3.25
2208 2458 4.896482 GGATGGTTAGAGAGACAGTGGTAT 59.104 45.833 0.00 0.00 0.00 2.73
2209 2459 5.010213 GGATGGTTAGAGAGACAGTGGTATC 59.990 48.000 0.00 0.00 35.48 2.24
2210 2460 4.279145 TGGTTAGAGAGACAGTGGTATCC 58.721 47.826 0.00 0.00 35.87 2.59
2211 2461 4.017407 TGGTTAGAGAGACAGTGGTATCCT 60.017 45.833 0.00 0.00 35.87 3.24
2212 2462 4.581409 GGTTAGAGAGACAGTGGTATCCTC 59.419 50.000 0.00 0.00 35.87 3.71
2213 2463 5.194432 GTTAGAGAGACAGTGGTATCCTCA 58.806 45.833 0.00 0.00 35.87 3.86
2214 2464 3.897239 AGAGAGACAGTGGTATCCTCAG 58.103 50.000 0.00 0.00 35.87 3.35
2215 2465 2.360801 GAGAGACAGTGGTATCCTCAGC 59.639 54.545 0.00 0.00 35.87 4.26
2216 2466 1.410882 GAGACAGTGGTATCCTCAGCC 59.589 57.143 0.00 0.00 28.90 4.85
2217 2467 0.466124 GACAGTGGTATCCTCAGCCC 59.534 60.000 0.00 0.00 0.00 5.19
2218 2468 0.252696 ACAGTGGTATCCTCAGCCCA 60.253 55.000 0.00 0.00 0.00 5.36
2219 2469 1.135094 CAGTGGTATCCTCAGCCCAT 58.865 55.000 0.00 0.00 0.00 4.00
2220 2470 1.071385 CAGTGGTATCCTCAGCCCATC 59.929 57.143 0.00 0.00 0.00 3.51
2221 2471 1.131638 GTGGTATCCTCAGCCCATCA 58.868 55.000 0.00 0.00 0.00 3.07
2222 2472 1.071385 GTGGTATCCTCAGCCCATCAG 59.929 57.143 0.00 0.00 0.00 2.90
2223 2473 0.689623 GGTATCCTCAGCCCATCAGG 59.310 60.000 0.00 0.00 39.47 3.86
2224 2474 1.722034 GTATCCTCAGCCCATCAGGA 58.278 55.000 0.00 0.00 40.70 3.86
2225 2475 2.264455 GTATCCTCAGCCCATCAGGAT 58.736 52.381 5.10 5.10 46.79 3.24
2226 2476 2.729383 ATCCTCAGCCCATCAGGATA 57.271 50.000 0.00 0.00 43.97 2.59
2227 2477 1.722034 TCCTCAGCCCATCAGGATAC 58.278 55.000 0.00 0.00 38.24 2.24
2228 2478 1.062198 TCCTCAGCCCATCAGGATACA 60.062 52.381 0.00 0.00 38.24 2.29
2229 2479 1.770658 CCTCAGCCCATCAGGATACAA 59.229 52.381 0.00 0.00 38.24 2.41
2230 2480 2.486191 CCTCAGCCCATCAGGATACAAC 60.486 54.545 0.00 0.00 38.24 3.32
2231 2481 2.437281 CTCAGCCCATCAGGATACAACT 59.563 50.000 0.00 0.00 38.24 3.16
2232 2482 2.435805 TCAGCCCATCAGGATACAACTC 59.564 50.000 0.00 0.00 38.24 3.01
2233 2483 1.771255 AGCCCATCAGGATACAACTCC 59.229 52.381 0.00 0.00 38.24 3.85
2234 2484 1.771255 GCCCATCAGGATACAACTCCT 59.229 52.381 0.00 0.00 46.92 3.69
2240 2490 1.958288 AGGATACAACTCCTGGTGCT 58.042 50.000 0.00 0.00 44.18 4.40
2241 2491 1.834263 AGGATACAACTCCTGGTGCTC 59.166 52.381 0.00 0.00 44.18 4.26
2242 2492 1.471676 GGATACAACTCCTGGTGCTCG 60.472 57.143 0.00 0.00 32.18 5.03
2243 2493 0.108138 ATACAACTCCTGGTGCTCGC 60.108 55.000 0.00 0.00 0.00 5.03
2244 2494 1.468506 TACAACTCCTGGTGCTCGCA 61.469 55.000 0.00 0.00 0.00 5.10
2245 2495 1.376424 CAACTCCTGGTGCTCGCAT 60.376 57.895 0.00 0.00 0.00 4.73
2246 2496 0.957395 CAACTCCTGGTGCTCGCATT 60.957 55.000 0.00 0.00 0.00 3.56
2247 2497 0.613260 AACTCCTGGTGCTCGCATTA 59.387 50.000 0.00 0.00 0.00 1.90
2248 2498 0.833287 ACTCCTGGTGCTCGCATTAT 59.167 50.000 0.00 0.00 0.00 1.28
2249 2499 1.210478 ACTCCTGGTGCTCGCATTATT 59.790 47.619 0.00 0.00 0.00 1.40
2250 2500 2.292267 CTCCTGGTGCTCGCATTATTT 58.708 47.619 0.00 0.00 0.00 1.40
2251 2501 2.288666 TCCTGGTGCTCGCATTATTTC 58.711 47.619 0.00 0.00 0.00 2.17
2252 2502 2.092968 TCCTGGTGCTCGCATTATTTCT 60.093 45.455 0.00 0.00 0.00 2.52
2253 2503 2.032550 CCTGGTGCTCGCATTATTTCTG 59.967 50.000 0.00 0.00 0.00 3.02
2254 2504 2.016318 TGGTGCTCGCATTATTTCTGG 58.984 47.619 0.00 0.00 0.00 3.86
2255 2505 2.288666 GGTGCTCGCATTATTTCTGGA 58.711 47.619 0.00 0.00 0.00 3.86
2256 2506 2.880890 GGTGCTCGCATTATTTCTGGAT 59.119 45.455 0.00 0.00 0.00 3.41
2257 2507 3.316308 GGTGCTCGCATTATTTCTGGATT 59.684 43.478 0.00 0.00 0.00 3.01
2258 2508 4.202050 GGTGCTCGCATTATTTCTGGATTT 60.202 41.667 0.00 0.00 0.00 2.17
2259 2509 5.008613 GGTGCTCGCATTATTTCTGGATTTA 59.991 40.000 0.00 0.00 0.00 1.40
2260 2510 6.294176 GGTGCTCGCATTATTTCTGGATTTAT 60.294 38.462 0.00 0.00 0.00 1.40
2261 2511 7.141363 GTGCTCGCATTATTTCTGGATTTATT 58.859 34.615 0.00 0.00 0.00 1.40
2262 2512 7.649306 GTGCTCGCATTATTTCTGGATTTATTT 59.351 33.333 0.00 0.00 0.00 1.40
2263 2513 7.862372 TGCTCGCATTATTTCTGGATTTATTTC 59.138 33.333 0.00 0.00 0.00 2.17
2264 2514 7.862372 GCTCGCATTATTTCTGGATTTATTTCA 59.138 33.333 0.00 0.00 0.00 2.69
2265 2515 9.390795 CTCGCATTATTTCTGGATTTATTTCAG 57.609 33.333 0.00 0.00 0.00 3.02
2266 2516 8.352201 TCGCATTATTTCTGGATTTATTTCAGG 58.648 33.333 0.00 0.00 0.00 3.86
2267 2517 8.352201 CGCATTATTTCTGGATTTATTTCAGGA 58.648 33.333 0.00 0.00 0.00 3.86
2273 2523 6.942532 TCTGGATTTATTTCAGGATTTCCG 57.057 37.500 0.00 0.00 42.08 4.30
2274 2524 5.827797 TCTGGATTTATTTCAGGATTTCCGG 59.172 40.000 0.00 0.00 42.08 5.14
2275 2525 4.340950 TGGATTTATTTCAGGATTTCCGGC 59.659 41.667 0.00 0.00 42.08 6.13
2276 2526 4.537015 GATTTATTTCAGGATTTCCGGCG 58.463 43.478 0.00 0.00 42.08 6.46
2277 2527 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
2278 2528 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
2279 2529 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
2280 2530 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
2281 2531 1.819208 CAGGATTTCCGGCGATGCA 60.819 57.895 9.30 0.00 42.08 3.96
2282 2532 1.819632 AGGATTTCCGGCGATGCAC 60.820 57.895 9.30 0.00 42.08 4.57
2283 2533 1.819632 GGATTTCCGGCGATGCACT 60.820 57.895 9.30 0.00 0.00 4.40
2284 2534 1.376609 GGATTTCCGGCGATGCACTT 61.377 55.000 9.30 0.00 0.00 3.16
2285 2535 0.451783 GATTTCCGGCGATGCACTTT 59.548 50.000 9.30 0.00 0.00 2.66
2286 2536 0.451783 ATTTCCGGCGATGCACTTTC 59.548 50.000 9.30 0.00 0.00 2.62
2287 2537 0.886938 TTTCCGGCGATGCACTTTCA 60.887 50.000 9.30 0.00 0.00 2.69
2288 2538 1.298157 TTCCGGCGATGCACTTTCAG 61.298 55.000 9.30 0.00 0.00 3.02
2289 2539 2.034879 CCGGCGATGCACTTTCAGT 61.035 57.895 9.30 0.00 0.00 3.41
2290 2540 0.739462 CCGGCGATGCACTTTCAGTA 60.739 55.000 9.30 0.00 0.00 2.74
2291 2541 0.647410 CGGCGATGCACTTTCAGTAG 59.353 55.000 0.00 0.00 0.00 2.57
2292 2542 1.735700 CGGCGATGCACTTTCAGTAGA 60.736 52.381 0.00 0.00 0.00 2.59
2293 2543 1.929836 GGCGATGCACTTTCAGTAGAG 59.070 52.381 0.00 0.00 0.00 2.43
2294 2544 1.929836 GCGATGCACTTTCAGTAGAGG 59.070 52.381 0.00 0.00 0.00 3.69
2295 2545 2.417379 GCGATGCACTTTCAGTAGAGGA 60.417 50.000 0.00 0.00 0.00 3.71
2296 2546 3.443037 CGATGCACTTTCAGTAGAGGAG 58.557 50.000 0.00 0.00 0.00 3.69
2297 2547 3.129462 CGATGCACTTTCAGTAGAGGAGA 59.871 47.826 0.00 0.00 0.00 3.71
2298 2548 3.944055 TGCACTTTCAGTAGAGGAGAC 57.056 47.619 0.00 0.00 0.00 3.36
2299 2549 2.229062 TGCACTTTCAGTAGAGGAGACG 59.771 50.000 0.00 0.00 0.00 4.18
2300 2550 2.229302 GCACTTTCAGTAGAGGAGACGT 59.771 50.000 0.00 0.00 0.00 4.34
2301 2551 3.305471 GCACTTTCAGTAGAGGAGACGTT 60.305 47.826 0.00 0.00 0.00 3.99
2302 2552 4.477780 CACTTTCAGTAGAGGAGACGTTC 58.522 47.826 0.00 0.00 0.00 3.95
2314 2564 2.595463 ACGTTCCCGTCGAGGACA 60.595 61.111 6.70 0.00 46.28 4.02
2315 2565 2.195567 ACGTTCCCGTCGAGGACAA 61.196 57.895 6.70 0.00 46.28 3.18
2316 2566 1.443872 CGTTCCCGTCGAGGACAAG 60.444 63.158 6.70 0.00 45.00 3.16
2317 2567 1.080025 GTTCCCGTCGAGGACAAGG 60.080 63.158 6.70 0.00 45.00 3.61
2318 2568 2.939261 TTCCCGTCGAGGACAAGGC 61.939 63.158 6.70 0.00 45.00 4.35
2319 2569 4.796231 CCCGTCGAGGACAAGGCG 62.796 72.222 6.70 0.00 45.00 5.52
2322 2572 4.070552 GTCGAGGACAAGGCGCCT 62.071 66.667 27.08 27.08 37.18 5.52
2323 2573 2.361992 TCGAGGACAAGGCGCCTA 60.362 61.111 33.07 8.62 33.84 3.93
2324 2574 1.756950 TCGAGGACAAGGCGCCTAT 60.757 57.895 33.07 22.14 33.84 2.57
2325 2575 1.592669 CGAGGACAAGGCGCCTATG 60.593 63.158 33.07 29.05 33.84 2.23
2326 2576 1.823295 GAGGACAAGGCGCCTATGA 59.177 57.895 33.07 0.00 33.84 2.15
2327 2577 0.394565 GAGGACAAGGCGCCTATGAT 59.605 55.000 33.07 15.80 33.84 2.45
2328 2578 0.107456 AGGACAAGGCGCCTATGATG 59.893 55.000 33.07 26.40 31.31 3.07
2329 2579 0.106708 GGACAAGGCGCCTATGATGA 59.893 55.000 33.07 0.00 0.00 2.92
2330 2580 1.221414 GACAAGGCGCCTATGATGAC 58.779 55.000 33.07 20.48 0.00 3.06
2331 2581 0.833287 ACAAGGCGCCTATGATGACT 59.167 50.000 33.07 8.62 0.00 3.41
2332 2582 1.210478 ACAAGGCGCCTATGATGACTT 59.790 47.619 33.07 7.71 0.00 3.01
2333 2583 1.869767 CAAGGCGCCTATGATGACTTC 59.130 52.381 33.07 0.00 0.00 3.01
2334 2584 0.032678 AGGCGCCTATGATGACTTCG 59.967 55.000 31.86 0.00 0.00 3.79
2335 2585 0.249489 GGCGCCTATGATGACTTCGT 60.249 55.000 22.15 0.00 0.00 3.85
2336 2586 1.000607 GGCGCCTATGATGACTTCGTA 60.001 52.381 22.15 0.00 0.00 3.43
2337 2587 2.545113 GGCGCCTATGATGACTTCGTAA 60.545 50.000 22.15 0.00 0.00 3.18
2338 2588 3.120792 GCGCCTATGATGACTTCGTAAA 58.879 45.455 0.00 0.00 0.00 2.01
2339 2589 3.741344 GCGCCTATGATGACTTCGTAAAT 59.259 43.478 0.00 0.00 0.00 1.40
2340 2590 4.143305 GCGCCTATGATGACTTCGTAAATC 60.143 45.833 0.00 0.00 0.00 2.17
2341 2591 5.223382 CGCCTATGATGACTTCGTAAATCT 58.777 41.667 0.00 0.00 0.00 2.40
2342 2592 5.343593 CGCCTATGATGACTTCGTAAATCTC 59.656 44.000 0.00 0.00 0.00 2.75
2343 2593 6.216569 GCCTATGATGACTTCGTAAATCTCA 58.783 40.000 0.00 0.00 0.00 3.27
2344 2594 6.701841 GCCTATGATGACTTCGTAAATCTCAA 59.298 38.462 0.00 0.00 0.00 3.02
2345 2595 7.095857 GCCTATGATGACTTCGTAAATCTCAAG 60.096 40.741 0.00 0.00 0.00 3.02
2346 2596 8.138074 CCTATGATGACTTCGTAAATCTCAAGA 58.862 37.037 0.00 0.00 0.00 3.02
2347 2597 9.689976 CTATGATGACTTCGTAAATCTCAAGAT 57.310 33.333 0.00 0.00 36.07 2.40
2348 2598 7.761651 TGATGACTTCGTAAATCTCAAGATG 57.238 36.000 0.00 0.00 34.49 2.90
2349 2599 7.547227 TGATGACTTCGTAAATCTCAAGATGA 58.453 34.615 0.00 0.00 34.49 2.92
2350 2600 8.200120 TGATGACTTCGTAAATCTCAAGATGAT 58.800 33.333 0.00 0.00 34.49 2.45
2351 2601 9.684448 GATGACTTCGTAAATCTCAAGATGATA 57.316 33.333 0.00 0.00 34.49 2.15
2357 2607 9.788960 TTCGTAAATCTCAAGATGATATATCGG 57.211 33.333 8.19 0.00 34.49 4.18
2358 2608 7.915923 TCGTAAATCTCAAGATGATATATCGGC 59.084 37.037 8.19 2.79 34.49 5.54
2359 2609 7.168302 CGTAAATCTCAAGATGATATATCGGCC 59.832 40.741 8.19 0.00 34.49 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.116125 GAGCTTGGCCACCCTTGT 59.884 61.111 3.88 0.00 0.00 3.16
29 30 3.173240 GACGACGCGGTCTTGCTC 61.173 66.667 12.47 0.00 34.09 4.26
89 99 2.202570 CATGTCGGACCCGTCGTC 60.203 66.667 8.42 0.00 41.15 4.20
90 100 3.755628 CCATGTCGGACCCGTCGT 61.756 66.667 8.42 1.42 40.74 4.34
143 153 1.003718 CTTTTCCCTTCCGGTCGCT 60.004 57.895 0.00 0.00 0.00 4.93
157 167 3.920093 CTTCCTCGCCGGCCCTTTT 62.920 63.158 23.46 0.00 0.00 2.27
287 301 2.514902 CAAACGGGCGTAATTCACATG 58.485 47.619 0.00 0.00 0.00 3.21
298 312 1.167781 AAACTGGTACCAAACGGGCG 61.168 55.000 17.11 4.72 42.05 6.13
329 347 9.559958 GTAGATCAACAAACGATCAAAATCAAT 57.440 29.630 0.00 0.00 41.49 2.57
347 368 6.445357 TCATGCAACTACTACGTAGATCAA 57.555 37.500 28.74 9.99 38.29 2.57
420 441 4.478317 TGATTGGACACTCCCTAAATCCAT 59.522 41.667 0.00 0.00 39.18 3.41
439 460 2.616842 GACACACCCGTGAACTTTGATT 59.383 45.455 0.96 0.00 46.80 2.57
445 466 1.445942 CTGGACACACCCGTGAACT 59.554 57.895 0.96 0.00 46.80 3.01
448 469 3.936203 GCCTGGACACACCCGTGA 61.936 66.667 0.00 0.00 46.80 4.35
536 560 2.340328 GCCGTCCGCTCCCATTTTT 61.340 57.895 0.00 0.00 0.00 1.94
537 561 2.750237 GCCGTCCGCTCCCATTTT 60.750 61.111 0.00 0.00 0.00 1.82
538 562 4.796495 GGCCGTCCGCTCCCATTT 62.796 66.667 0.00 0.00 37.74 2.32
590 614 0.807667 GCGTCCATGATCTTCAGCGT 60.808 55.000 0.00 0.00 0.00 5.07
791 824 2.525124 AACAGGGGTGGATGCGTGA 61.525 57.895 0.00 0.00 0.00 4.35
882 919 2.813908 GGCAAAGGCGTCGATCGT 60.814 61.111 15.94 0.00 42.47 3.73
981 1018 2.244651 GGTGGCGTGTCACACACTC 61.245 63.158 20.65 11.51 46.46 3.51
1227 1264 1.597797 CCACGAGCCGGTAGTTGGTA 61.598 60.000 1.90 0.00 0.00 3.25
1361 1398 2.751036 TCGGTGGCCATGCATGTG 60.751 61.111 24.58 16.68 0.00 3.21
1448 1485 2.978978 TGCACATACTATATGCCTGGGT 59.021 45.455 0.00 0.00 38.63 4.51
1452 1489 3.588842 ACCCATGCACATACTATATGCCT 59.411 43.478 0.00 0.00 38.63 4.75
1487 1524 5.565259 CGTAACAAATTAGACGACGTGTACT 59.435 40.000 4.58 0.00 37.50 2.73
1499 1536 4.327898 TGCCTTACTCGCGTAACAAATTAG 59.672 41.667 5.77 0.00 32.45 1.73
1716 1757 6.557291 AAAAACGTTCGATTTACCATGGTA 57.443 33.333 21.05 21.05 0.00 3.25
2084 2333 0.119561 TTAGGCTTACCAGTCCCCCA 59.880 55.000 0.00 0.00 39.06 4.96
2127 2377 2.689421 TGGCATCGGGCATTTTTAGGAT 60.689 45.455 2.55 0.00 45.76 3.24
2144 2394 2.325583 AGTCTTCGACTTTTGTGGCA 57.674 45.000 0.00 0.00 40.28 4.92
2174 2424 4.042809 TCTCTAACCATCCAACCACATGTT 59.957 41.667 0.00 0.00 37.80 2.71
2175 2425 3.587061 TCTCTAACCATCCAACCACATGT 59.413 43.478 0.00 0.00 0.00 3.21
2176 2426 4.080919 TCTCTCTAACCATCCAACCACATG 60.081 45.833 0.00 0.00 0.00 3.21
2177 2427 4.080863 GTCTCTCTAACCATCCAACCACAT 60.081 45.833 0.00 0.00 0.00 3.21
2178 2428 3.260884 GTCTCTCTAACCATCCAACCACA 59.739 47.826 0.00 0.00 0.00 4.17
2179 2429 3.260884 TGTCTCTCTAACCATCCAACCAC 59.739 47.826 0.00 0.00 0.00 4.16
2180 2430 3.515502 CTGTCTCTCTAACCATCCAACCA 59.484 47.826 0.00 0.00 0.00 3.67
2181 2431 3.515901 ACTGTCTCTCTAACCATCCAACC 59.484 47.826 0.00 0.00 0.00 3.77
2182 2432 4.499183 CACTGTCTCTCTAACCATCCAAC 58.501 47.826 0.00 0.00 0.00 3.77
2183 2433 3.515502 CCACTGTCTCTCTAACCATCCAA 59.484 47.826 0.00 0.00 0.00 3.53
2184 2434 3.099905 CCACTGTCTCTCTAACCATCCA 58.900 50.000 0.00 0.00 0.00 3.41
2185 2435 3.100671 ACCACTGTCTCTCTAACCATCC 58.899 50.000 0.00 0.00 0.00 3.51
2186 2436 5.010213 GGATACCACTGTCTCTCTAACCATC 59.990 48.000 0.00 0.00 0.00 3.51
2187 2437 4.896482 GGATACCACTGTCTCTCTAACCAT 59.104 45.833 0.00 0.00 0.00 3.55
2188 2438 4.017407 AGGATACCACTGTCTCTCTAACCA 60.017 45.833 0.00 0.00 37.17 3.67
2189 2439 4.538738 AGGATACCACTGTCTCTCTAACC 58.461 47.826 0.00 0.00 37.17 2.85
2190 2440 5.194432 TGAGGATACCACTGTCTCTCTAAC 58.806 45.833 0.00 0.00 37.17 2.34
2191 2441 5.441500 CTGAGGATACCACTGTCTCTCTAA 58.558 45.833 0.00 0.00 37.17 2.10
2192 2442 4.687494 GCTGAGGATACCACTGTCTCTCTA 60.687 50.000 0.00 0.00 37.17 2.43
2193 2443 3.897239 CTGAGGATACCACTGTCTCTCT 58.103 50.000 0.00 0.00 37.17 3.10
2194 2444 2.360801 GCTGAGGATACCACTGTCTCTC 59.639 54.545 0.00 0.00 37.17 3.20
2195 2445 2.383855 GCTGAGGATACCACTGTCTCT 58.616 52.381 0.00 0.00 37.17 3.10
2196 2446 1.410882 GGCTGAGGATACCACTGTCTC 59.589 57.143 0.00 0.00 37.17 3.36
2197 2447 1.490574 GGCTGAGGATACCACTGTCT 58.509 55.000 0.00 0.00 37.17 3.41
2198 2448 0.466124 GGGCTGAGGATACCACTGTC 59.534 60.000 0.00 0.00 37.17 3.51
2199 2449 0.252696 TGGGCTGAGGATACCACTGT 60.253 55.000 0.00 0.00 37.17 3.55
2200 2450 1.071385 GATGGGCTGAGGATACCACTG 59.929 57.143 0.00 0.00 35.52 3.66
2201 2451 1.344393 TGATGGGCTGAGGATACCACT 60.344 52.381 0.00 0.00 35.52 4.00
2202 2452 1.071385 CTGATGGGCTGAGGATACCAC 59.929 57.143 0.00 0.00 35.52 4.16
2203 2453 1.427809 CTGATGGGCTGAGGATACCA 58.572 55.000 0.00 0.00 37.41 3.25
2204 2454 0.689623 CCTGATGGGCTGAGGATACC 59.310 60.000 0.00 0.00 37.17 2.73
2205 2455 1.722034 TCCTGATGGGCTGAGGATAC 58.278 55.000 0.00 0.00 30.58 2.24
2206 2456 2.729383 ATCCTGATGGGCTGAGGATA 57.271 50.000 0.00 0.00 43.52 2.59
2207 2457 2.264455 GTATCCTGATGGGCTGAGGAT 58.736 52.381 0.00 0.00 46.37 3.24
2208 2458 1.062198 TGTATCCTGATGGGCTGAGGA 60.062 52.381 0.00 0.00 40.22 3.71
2209 2459 1.427809 TGTATCCTGATGGGCTGAGG 58.572 55.000 0.00 0.00 34.39 3.86
2210 2460 2.437281 AGTTGTATCCTGATGGGCTGAG 59.563 50.000 0.00 0.00 34.39 3.35
2211 2461 2.435805 GAGTTGTATCCTGATGGGCTGA 59.564 50.000 0.00 0.00 34.39 4.26
2212 2462 2.486191 GGAGTTGTATCCTGATGGGCTG 60.486 54.545 0.00 0.00 36.35 4.85
2213 2463 1.771255 GGAGTTGTATCCTGATGGGCT 59.229 52.381 0.00 0.00 36.35 5.19
2214 2464 2.262423 GGAGTTGTATCCTGATGGGC 57.738 55.000 0.00 0.00 36.35 5.36
2222 2472 1.471676 CGAGCACCAGGAGTTGTATCC 60.472 57.143 0.00 0.00 39.89 2.59
2223 2473 1.927895 CGAGCACCAGGAGTTGTATC 58.072 55.000 0.00 0.00 0.00 2.24
2224 2474 0.108138 GCGAGCACCAGGAGTTGTAT 60.108 55.000 0.00 0.00 0.00 2.29
2225 2475 1.292223 GCGAGCACCAGGAGTTGTA 59.708 57.895 0.00 0.00 0.00 2.41
2226 2476 2.031163 GCGAGCACCAGGAGTTGT 59.969 61.111 0.00 0.00 0.00 3.32
2227 2477 0.957395 AATGCGAGCACCAGGAGTTG 60.957 55.000 0.00 0.00 0.00 3.16
2228 2478 0.613260 TAATGCGAGCACCAGGAGTT 59.387 50.000 0.00 0.00 0.00 3.01
2229 2479 0.833287 ATAATGCGAGCACCAGGAGT 59.167 50.000 0.00 0.00 0.00 3.85
2230 2480 1.959042 AATAATGCGAGCACCAGGAG 58.041 50.000 0.00 0.00 0.00 3.69
2231 2481 2.092968 AGAAATAATGCGAGCACCAGGA 60.093 45.455 0.00 0.00 0.00 3.86
2232 2482 2.032550 CAGAAATAATGCGAGCACCAGG 59.967 50.000 0.00 0.00 0.00 4.45
2233 2483 2.032550 CCAGAAATAATGCGAGCACCAG 59.967 50.000 0.00 0.00 0.00 4.00
2234 2484 2.016318 CCAGAAATAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
2235 2485 2.288666 TCCAGAAATAATGCGAGCACC 58.711 47.619 0.00 0.00 0.00 5.01
2236 2486 4.558538 AATCCAGAAATAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
2237 2487 6.882610 ATAAATCCAGAAATAATGCGAGCA 57.117 33.333 0.00 0.00 0.00 4.26
2238 2488 7.862372 TGAAATAAATCCAGAAATAATGCGAGC 59.138 33.333 0.00 0.00 0.00 5.03
2239 2489 9.390795 CTGAAATAAATCCAGAAATAATGCGAG 57.609 33.333 0.00 0.00 0.00 5.03
2240 2490 8.352201 CCTGAAATAAATCCAGAAATAATGCGA 58.648 33.333 0.00 0.00 0.00 5.10
2241 2491 8.352201 TCCTGAAATAAATCCAGAAATAATGCG 58.648 33.333 0.00 0.00 0.00 4.73
2247 2497 8.416329 CGGAAATCCTGAAATAAATCCAGAAAT 58.584 33.333 0.00 0.00 0.00 2.17
2248 2498 7.147915 CCGGAAATCCTGAAATAAATCCAGAAA 60.148 37.037 0.00 0.00 0.00 2.52
2249 2499 6.321181 CCGGAAATCCTGAAATAAATCCAGAA 59.679 38.462 0.00 0.00 0.00 3.02
2250 2500 5.827797 CCGGAAATCCTGAAATAAATCCAGA 59.172 40.000 0.00 0.00 0.00 3.86
2251 2501 5.507985 GCCGGAAATCCTGAAATAAATCCAG 60.508 44.000 5.05 0.00 0.00 3.86
2252 2502 4.340950 GCCGGAAATCCTGAAATAAATCCA 59.659 41.667 5.05 0.00 0.00 3.41
2253 2503 4.556699 CGCCGGAAATCCTGAAATAAATCC 60.557 45.833 5.05 0.00 0.00 3.01
2254 2504 4.274950 TCGCCGGAAATCCTGAAATAAATC 59.725 41.667 5.05 0.00 0.00 2.17
2255 2505 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
2256 2506 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
2257 2507 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
2258 2508 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
2259 2509 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
2260 2510 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
2261 2511 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
2262 2512 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
2263 2513 1.819208 TGCATCGCCGGAAATCCTG 60.819 57.895 5.05 0.00 0.00 3.86
2264 2514 1.819632 GTGCATCGCCGGAAATCCT 60.820 57.895 5.05 0.00 0.00 3.24
2265 2515 1.376609 AAGTGCATCGCCGGAAATCC 61.377 55.000 5.05 0.00 0.00 3.01
2266 2516 0.451783 AAAGTGCATCGCCGGAAATC 59.548 50.000 5.05 0.00 0.00 2.17
2267 2517 0.451783 GAAAGTGCATCGCCGGAAAT 59.548 50.000 5.05 0.00 0.00 2.17
2268 2518 0.886938 TGAAAGTGCATCGCCGGAAA 60.887 50.000 5.05 0.00 0.00 3.13
2269 2519 1.298157 CTGAAAGTGCATCGCCGGAA 61.298 55.000 5.05 0.00 0.00 4.30
2270 2520 1.741401 CTGAAAGTGCATCGCCGGA 60.741 57.895 5.05 0.00 0.00 5.14
2271 2521 2.787249 CTGAAAGTGCATCGCCGG 59.213 61.111 0.00 0.00 0.00 6.13
2280 2530 4.616373 GGAACGTCTCCTCTACTGAAAGTG 60.616 50.000 8.87 0.00 44.77 3.16
2281 2531 3.506844 GGAACGTCTCCTCTACTGAAAGT 59.493 47.826 8.87 0.00 46.18 2.66
2282 2532 3.119424 GGGAACGTCTCCTCTACTGAAAG 60.119 52.174 13.94 0.00 44.68 2.62
2283 2533 2.824341 GGGAACGTCTCCTCTACTGAAA 59.176 50.000 13.94 0.00 44.68 2.69
2284 2534 2.444421 GGGAACGTCTCCTCTACTGAA 58.556 52.381 13.94 0.00 44.68 3.02
2285 2535 2.125773 GGGAACGTCTCCTCTACTGA 57.874 55.000 13.94 0.00 44.68 3.41
2299 2549 1.080025 CCTTGTCCTCGACGGGAAC 60.080 63.158 0.00 0.00 37.10 3.62
2300 2550 2.939261 GCCTTGTCCTCGACGGGAA 61.939 63.158 0.00 0.00 37.10 3.97
2301 2551 3.379445 GCCTTGTCCTCGACGGGA 61.379 66.667 0.00 0.00 34.95 5.14
2302 2552 4.796231 CGCCTTGTCCTCGACGGG 62.796 72.222 0.00 0.00 34.95 5.28
2305 2555 2.017559 ATAGGCGCCTTGTCCTCGAC 62.018 60.000 37.74 0.00 34.02 4.20
2306 2556 1.756950 ATAGGCGCCTTGTCCTCGA 60.757 57.895 37.74 15.04 34.02 4.04
2307 2557 1.592669 CATAGGCGCCTTGTCCTCG 60.593 63.158 37.74 11.49 34.02 4.63
2308 2558 0.394565 ATCATAGGCGCCTTGTCCTC 59.605 55.000 37.74 0.00 34.02 3.71
2309 2559 0.107456 CATCATAGGCGCCTTGTCCT 59.893 55.000 37.74 12.35 36.51 3.85
2310 2560 0.106708 TCATCATAGGCGCCTTGTCC 59.893 55.000 37.74 1.57 0.00 4.02
2311 2561 1.202580 AGTCATCATAGGCGCCTTGTC 60.203 52.381 37.74 23.29 0.00 3.18
2312 2562 0.833287 AGTCATCATAGGCGCCTTGT 59.167 50.000 37.74 21.60 0.00 3.16
2313 2563 1.869767 GAAGTCATCATAGGCGCCTTG 59.130 52.381 37.74 29.33 0.00 3.61
2314 2564 1.539065 CGAAGTCATCATAGGCGCCTT 60.539 52.381 37.74 19.80 0.00 4.35
2315 2565 0.032678 CGAAGTCATCATAGGCGCCT 59.967 55.000 34.85 34.85 0.00 5.52
2316 2566 0.249489 ACGAAGTCATCATAGGCGCC 60.249 55.000 21.89 21.89 29.74 6.53
2317 2567 2.417339 TACGAAGTCATCATAGGCGC 57.583 50.000 0.00 0.00 43.93 6.53
2318 2568 5.223382 AGATTTACGAAGTCATCATAGGCG 58.777 41.667 0.00 0.00 43.93 5.52
2319 2569 6.216569 TGAGATTTACGAAGTCATCATAGGC 58.783 40.000 0.00 0.00 43.93 3.93
2320 2570 8.138074 TCTTGAGATTTACGAAGTCATCATAGG 58.862 37.037 0.00 0.00 43.93 2.57
2321 2571 9.689976 ATCTTGAGATTTACGAAGTCATCATAG 57.310 33.333 0.00 0.00 43.93 2.23
2322 2572 9.468532 CATCTTGAGATTTACGAAGTCATCATA 57.531 33.333 0.00 0.00 35.39 2.15
2323 2573 8.200120 TCATCTTGAGATTTACGAAGTCATCAT 58.800 33.333 0.00 0.00 35.39 2.45
2324 2574 7.547227 TCATCTTGAGATTTACGAAGTCATCA 58.453 34.615 0.00 0.00 35.39 3.07
2325 2575 7.993821 TCATCTTGAGATTTACGAAGTCATC 57.006 36.000 0.00 0.00 35.39 2.92
2331 2581 9.788960 CCGATATATCATCTTGAGATTTACGAA 57.211 33.333 13.11 0.00 30.15 3.85
2332 2582 7.915923 GCCGATATATCATCTTGAGATTTACGA 59.084 37.037 13.11 0.00 30.15 3.43
2333 2583 7.168302 GGCCGATATATCATCTTGAGATTTACG 59.832 40.741 13.11 0.00 30.15 3.18
2334 2584 8.359060 GGCCGATATATCATCTTGAGATTTAC 57.641 38.462 13.11 0.00 30.15 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.