Multiple sequence alignment - TraesCS4D01G287500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G287500 chr4D 100.000 2584 0 0 1 2584 459191342 459193925 0.000000e+00 4772
1 TraesCS4D01G287500 chr4D 97.783 451 10 0 2020 2470 462983151 462983601 0.000000e+00 778
2 TraesCS4D01G287500 chr2D 93.320 2021 100 12 1 2018 631749573 631747585 0.000000e+00 2952
3 TraesCS4D01G287500 chr2D 96.233 1699 57 4 1 1694 469107935 469106239 0.000000e+00 2776
4 TraesCS4D01G287500 chr2D 95.413 109 3 2 2477 2584 72404235 72404342 3.420000e-39 172
5 TraesCS4D01G287500 chr2D 95.413 109 4 1 2477 2584 540798462 540798570 3.420000e-39 172
6 TraesCS4D01G287500 chr1B 93.153 2030 108 11 1 2020 127026370 127024362 0.000000e+00 2950
7 TraesCS4D01G287500 chr7B 92.122 2069 106 29 1 2022 551484720 551482662 0.000000e+00 2865
8 TraesCS4D01G287500 chr3B 92.021 2068 115 26 1 2021 597426785 597428849 0.000000e+00 2859
9 TraesCS4D01G287500 chr3B 93.913 1692 87 10 339 2022 8505202 8506885 0.000000e+00 2540
10 TraesCS4D01G287500 chr3B 91.071 336 23 6 1687 2019 564172728 564173059 5.070000e-122 448
11 TraesCS4D01G287500 chr1A 95.868 1694 64 6 4 1694 461966786 461965096 0.000000e+00 2736
12 TraesCS4D01G287500 chr1A 97.254 1056 26 3 1 1054 35564004 35562950 0.000000e+00 1786
13 TraesCS4D01G287500 chr3D 93.077 1690 78 24 339 2022 6991066 6992722 0.000000e+00 2436
14 TraesCS4D01G287500 chr3D 97.401 654 15 2 1367 2020 5544737 5545388 0.000000e+00 1112
15 TraesCS4D01G287500 chr3D 97.162 458 12 1 2020 2477 281535567 281535111 0.000000e+00 773
16 TraesCS4D01G287500 chr3D 97.155 457 12 1 2020 2476 589150399 589150854 0.000000e+00 771
17 TraesCS4D01G287500 chr2B 95.609 1412 54 8 611 2020 677292471 677293876 0.000000e+00 2257
18 TraesCS4D01G287500 chrUn 96.358 1263 39 4 437 1694 96553435 96554695 0.000000e+00 2071
19 TraesCS4D01G287500 chrUn 95.048 525 23 3 1 522 96553075 96553599 0.000000e+00 822
20 TraesCS4D01G287500 chrUn 95.413 109 3 2 2477 2584 106440725 106440832 3.420000e-39 172
21 TraesCS4D01G287500 chr7A 93.431 1294 61 12 497 1771 48781641 48782929 0.000000e+00 1897
22 TraesCS4D01G287500 chr7A 97.161 317 8 1 1704 2020 48782925 48783240 3.780000e-148 534
23 TraesCS4D01G287500 chr5D 97.380 458 12 0 2020 2477 205056289 205055832 0.000000e+00 780
24 TraesCS4D01G287500 chr5D 95.370 108 4 1 2477 2584 195003517 195003411 1.230000e-38 171
25 TraesCS4D01G287500 chr5D 95.370 108 4 1 2477 2584 298881812 298881706 1.230000e-38 171
26 TraesCS4D01G287500 chr5A 90.525 591 48 8 1 587 570488395 570488981 0.000000e+00 774
27 TraesCS4D01G287500 chr5A 96.137 466 16 2 2020 2484 545460883 545461347 0.000000e+00 760
28 TraesCS4D01G287500 chr5A 90.533 338 27 3 1687 2022 564350662 564350328 2.360000e-120 442
29 TraesCS4D01G287500 chr1D 97.162 458 13 0 2020 2477 255361980 255361523 0.000000e+00 774
30 TraesCS4D01G287500 chr1D 96.937 457 13 1 2020 2476 199126174 199126629 0.000000e+00 765
31 TraesCS4D01G287500 chr1D 95.370 108 4 1 2477 2584 277778589 277778483 1.230000e-38 171
32 TraesCS4D01G287500 chr6B 96.529 461 16 0 2020 2480 661300102 661299642 0.000000e+00 763
33 TraesCS4D01G287500 chr7D 96.336 464 15 2 2020 2482 293069026 293068564 0.000000e+00 761
34 TraesCS4D01G287500 chr7D 95.413 109 3 2 2477 2584 49614954 49615061 3.420000e-39 172
35 TraesCS4D01G287500 chr7D 95.370 108 4 1 2477 2584 203718103 203717997 1.230000e-38 171
36 TraesCS4D01G287500 chr6A 95.413 109 3 2 2477 2584 570674273 570674166 3.420000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G287500 chr4D 459191342 459193925 2583 False 4772.0 4772 100.000 1 2584 1 chr4D.!!$F1 2583
1 TraesCS4D01G287500 chr2D 631747585 631749573 1988 True 2952.0 2952 93.320 1 2018 1 chr2D.!!$R2 2017
2 TraesCS4D01G287500 chr2D 469106239 469107935 1696 True 2776.0 2776 96.233 1 1694 1 chr2D.!!$R1 1693
3 TraesCS4D01G287500 chr1B 127024362 127026370 2008 True 2950.0 2950 93.153 1 2020 1 chr1B.!!$R1 2019
4 TraesCS4D01G287500 chr7B 551482662 551484720 2058 True 2865.0 2865 92.122 1 2022 1 chr7B.!!$R1 2021
5 TraesCS4D01G287500 chr3B 597426785 597428849 2064 False 2859.0 2859 92.021 1 2021 1 chr3B.!!$F3 2020
6 TraesCS4D01G287500 chr3B 8505202 8506885 1683 False 2540.0 2540 93.913 339 2022 1 chr3B.!!$F1 1683
7 TraesCS4D01G287500 chr1A 461965096 461966786 1690 True 2736.0 2736 95.868 4 1694 1 chr1A.!!$R2 1690
8 TraesCS4D01G287500 chr1A 35562950 35564004 1054 True 1786.0 1786 97.254 1 1054 1 chr1A.!!$R1 1053
9 TraesCS4D01G287500 chr3D 6991066 6992722 1656 False 2436.0 2436 93.077 339 2022 1 chr3D.!!$F2 1683
10 TraesCS4D01G287500 chr3D 5544737 5545388 651 False 1112.0 1112 97.401 1367 2020 1 chr3D.!!$F1 653
11 TraesCS4D01G287500 chr2B 677292471 677293876 1405 False 2257.0 2257 95.609 611 2020 1 chr2B.!!$F1 1409
12 TraesCS4D01G287500 chrUn 96553075 96554695 1620 False 1446.5 2071 95.703 1 1694 2 chrUn.!!$F2 1693
13 TraesCS4D01G287500 chr7A 48781641 48783240 1599 False 1215.5 1897 95.296 497 2020 2 chr7A.!!$F1 1523
14 TraesCS4D01G287500 chr5A 570488395 570488981 586 False 774.0 774 90.525 1 587 1 chr5A.!!$F2 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
839 931 0.104855 TGCTGCTGTTCTGAACGAGT 59.895 50.0 15.18 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2080 2310 0.034896 GGTGTCACTCATCCAACGGT 59.965 55.0 2.35 0.0 0.0 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.337356 TCTCAAGAGGCGTTTCAAAATTTTT 58.663 32.000 0.00 0.00 0.00 1.94
50 51 5.278827 GCGTTTCAAAATTTTTGATGATGCG 59.721 36.000 21.75 19.74 0.00 4.73
92 93 6.012858 TCCCAGTCCAAGTAGACATTGTTATT 60.013 38.462 0.00 0.00 39.34 1.40
425 426 6.430616 CCCTTTTATTGCAACATTTTGATGGT 59.569 34.615 0.00 0.00 34.24 3.55
443 444 5.355071 TGATGGTTGTGCAGATTGTATCTTC 59.645 40.000 0.00 0.00 37.58 2.87
481 482 3.890756 TGTGTTTGTGCTGATTTCATCCT 59.109 39.130 0.00 0.00 0.00 3.24
839 931 0.104855 TGCTGCTGTTCTGAACGAGT 59.895 50.000 15.18 0.00 0.00 4.18
906 998 2.095461 GAAGTGGAGGAAGATTTGGGC 58.905 52.381 0.00 0.00 0.00 5.36
975 1068 5.431765 AGATACTTGCACAATTAGGTCAGG 58.568 41.667 0.00 0.00 0.00 3.86
1507 1608 1.697432 TCTCGTTGACAACCCCAAGAT 59.303 47.619 12.66 0.00 0.00 2.40
1656 1767 1.130777 AGTGCCATTGGGTTGCTTTT 58.869 45.000 4.53 0.00 36.17 2.27
1920 2150 3.846955 CGGAACCAACCCGTTCTAT 57.153 52.632 0.00 0.00 41.58 1.98
2022 2252 3.053544 TCCTCAACCAAACACACCCTTAA 60.054 43.478 0.00 0.00 0.00 1.85
2023 2253 3.702045 CCTCAACCAAACACACCCTTAAA 59.298 43.478 0.00 0.00 0.00 1.52
2024 2254 4.440940 CCTCAACCAAACACACCCTTAAAC 60.441 45.833 0.00 0.00 0.00 2.01
2025 2255 4.345854 TCAACCAAACACACCCTTAAACT 58.654 39.130 0.00 0.00 0.00 2.66
2026 2256 4.773149 TCAACCAAACACACCCTTAAACTT 59.227 37.500 0.00 0.00 0.00 2.66
2027 2257 5.246429 TCAACCAAACACACCCTTAAACTTT 59.754 36.000 0.00 0.00 0.00 2.66
2028 2258 5.079689 ACCAAACACACCCTTAAACTTTG 57.920 39.130 0.00 0.00 0.00 2.77
2029 2259 4.528987 ACCAAACACACCCTTAAACTTTGT 59.471 37.500 0.00 0.00 0.00 2.83
2030 2260 4.867608 CCAAACACACCCTTAAACTTTGTG 59.132 41.667 0.00 0.00 42.68 3.33
2031 2261 4.729227 AACACACCCTTAAACTTTGTGG 57.271 40.909 5.14 0.00 41.56 4.17
2032 2262 3.028130 ACACACCCTTAAACTTTGTGGG 58.972 45.455 10.44 10.44 41.56 4.61
2033 2263 2.036387 ACACCCTTAAACTTTGTGGGC 58.964 47.619 11.46 0.00 41.44 5.36
2034 2264 1.343142 CACCCTTAAACTTTGTGGGCC 59.657 52.381 0.00 0.00 41.44 5.80
2035 2265 1.062810 ACCCTTAAACTTTGTGGGCCA 60.063 47.619 0.00 0.00 41.44 5.36
2036 2266 1.343142 CCCTTAAACTTTGTGGGCCAC 59.657 52.381 29.75 29.75 34.56 5.01
2037 2267 2.316108 CCTTAAACTTTGTGGGCCACT 58.684 47.619 34.69 17.75 35.11 4.00
2038 2268 2.698274 CCTTAAACTTTGTGGGCCACTT 59.302 45.455 34.69 22.93 35.11 3.16
2039 2269 3.133901 CCTTAAACTTTGTGGGCCACTTT 59.866 43.478 34.69 27.02 35.11 2.66
2040 2270 4.383661 CCTTAAACTTTGTGGGCCACTTTT 60.384 41.667 34.69 26.72 35.11 2.27
2041 2271 2.689553 AACTTTGTGGGCCACTTTTG 57.310 45.000 34.69 23.28 35.11 2.44
2043 2273 0.106521 CTTTGTGGGCCACTTTTGGG 59.893 55.000 34.69 16.01 44.15 4.12
2049 2279 3.680786 GCCACTTTTGGGCCGGTC 61.681 66.667 1.90 0.00 45.87 4.79
2050 2280 2.989253 CCACTTTTGGGCCGGTCC 60.989 66.667 21.35 21.35 39.57 4.46
2051 2281 2.203422 CACTTTTGGGCCGGTCCA 60.203 61.111 27.82 27.82 36.21 4.02
2052 2282 2.203437 ACTTTTGGGCCGGTCCAC 60.203 61.111 31.83 11.42 36.38 4.02
2053 2283 3.361977 CTTTTGGGCCGGTCCACG 61.362 66.667 31.83 15.99 43.80 4.94
2054 2284 4.192453 TTTTGGGCCGGTCCACGT 62.192 61.111 31.83 0.00 42.24 4.49
2055 2285 4.939368 TTTGGGCCGGTCCACGTG 62.939 66.667 31.83 9.08 42.24 4.49
2059 2289 4.612412 GGCCGGTCCACGTGTCAA 62.612 66.667 15.65 0.00 42.24 3.18
2060 2290 3.343421 GCCGGTCCACGTGTCAAC 61.343 66.667 15.65 9.43 42.24 3.18
2061 2291 2.107343 CCGGTCCACGTGTCAACA 59.893 61.111 15.65 0.00 42.24 3.33
2062 2292 1.301401 CCGGTCCACGTGTCAACAT 60.301 57.895 15.65 0.00 42.24 2.71
2063 2293 0.038067 CCGGTCCACGTGTCAACATA 60.038 55.000 15.65 0.00 42.24 2.29
2064 2294 1.404986 CCGGTCCACGTGTCAACATAT 60.405 52.381 15.65 0.00 42.24 1.78
2065 2295 1.924524 CGGTCCACGTGTCAACATATC 59.075 52.381 15.65 0.00 37.93 1.63
2066 2296 2.672760 CGGTCCACGTGTCAACATATCA 60.673 50.000 15.65 0.00 37.93 2.15
2067 2297 3.531538 GGTCCACGTGTCAACATATCAT 58.468 45.455 15.65 0.00 0.00 2.45
2068 2298 4.689071 GGTCCACGTGTCAACATATCATA 58.311 43.478 15.65 0.00 0.00 2.15
2069 2299 4.745125 GGTCCACGTGTCAACATATCATAG 59.255 45.833 15.65 0.00 0.00 2.23
2070 2300 4.745125 GTCCACGTGTCAACATATCATAGG 59.255 45.833 15.65 0.00 0.00 2.57
2071 2301 3.494626 CCACGTGTCAACATATCATAGGC 59.505 47.826 15.65 0.00 0.00 3.93
2072 2302 3.494626 CACGTGTCAACATATCATAGGCC 59.505 47.826 7.58 0.00 0.00 5.19
2073 2303 3.067106 CGTGTCAACATATCATAGGCCC 58.933 50.000 0.00 0.00 0.00 5.80
2074 2304 3.494223 CGTGTCAACATATCATAGGCCCA 60.494 47.826 0.00 0.00 0.00 5.36
2075 2305 4.655963 GTGTCAACATATCATAGGCCCAT 58.344 43.478 0.00 0.00 0.00 4.00
2076 2306 4.697352 GTGTCAACATATCATAGGCCCATC 59.303 45.833 0.00 0.00 0.00 3.51
2077 2307 4.598807 TGTCAACATATCATAGGCCCATCT 59.401 41.667 0.00 0.00 0.00 2.90
2078 2308 5.181748 GTCAACATATCATAGGCCCATCTC 58.818 45.833 0.00 0.00 0.00 2.75
2079 2309 4.081476 TCAACATATCATAGGCCCATCTCG 60.081 45.833 0.00 0.00 0.00 4.04
2080 2310 3.713003 ACATATCATAGGCCCATCTCGA 58.287 45.455 0.00 0.00 0.00 4.04
2081 2311 3.449018 ACATATCATAGGCCCATCTCGAC 59.551 47.826 0.00 0.00 0.00 4.20
2082 2312 1.270907 ATCATAGGCCCATCTCGACC 58.729 55.000 0.00 0.00 0.00 4.79
2083 2313 1.179174 TCATAGGCCCATCTCGACCG 61.179 60.000 0.00 0.00 0.00 4.79
2084 2314 1.152525 ATAGGCCCATCTCGACCGT 60.153 57.895 0.00 0.00 0.00 4.83
2085 2315 0.759436 ATAGGCCCATCTCGACCGTT 60.759 55.000 0.00 0.00 0.00 4.44
2086 2316 1.672854 TAGGCCCATCTCGACCGTTG 61.673 60.000 0.00 0.00 0.00 4.10
2087 2317 2.511600 GCCCATCTCGACCGTTGG 60.512 66.667 0.00 0.00 0.00 3.77
2088 2318 3.014085 GCCCATCTCGACCGTTGGA 62.014 63.158 3.88 0.00 0.00 3.53
2089 2319 1.823295 CCCATCTCGACCGTTGGAT 59.177 57.895 3.88 0.00 0.00 3.41
2090 2320 0.530650 CCCATCTCGACCGTTGGATG 60.531 60.000 3.88 3.79 36.35 3.51
2091 2321 0.459899 CCATCTCGACCGTTGGATGA 59.540 55.000 10.67 0.00 38.14 2.92
2092 2322 1.536922 CCATCTCGACCGTTGGATGAG 60.537 57.143 10.67 0.00 38.14 2.90
2093 2323 1.135139 CATCTCGACCGTTGGATGAGT 59.865 52.381 4.52 0.00 38.14 3.41
2094 2324 0.526211 TCTCGACCGTTGGATGAGTG 59.474 55.000 8.26 0.00 32.49 3.51
2095 2325 0.526211 CTCGACCGTTGGATGAGTGA 59.474 55.000 0.00 0.00 0.00 3.41
2096 2326 0.242825 TCGACCGTTGGATGAGTGAC 59.757 55.000 0.00 0.00 0.00 3.67
2097 2327 0.038618 CGACCGTTGGATGAGTGACA 60.039 55.000 0.00 0.00 0.00 3.58
2098 2328 1.429463 GACCGTTGGATGAGTGACAC 58.571 55.000 0.00 0.00 0.00 3.67
2099 2329 0.034896 ACCGTTGGATGAGTGACACC 59.965 55.000 0.84 0.00 0.00 4.16
2100 2330 0.321671 CCGTTGGATGAGTGACACCT 59.678 55.000 0.84 0.00 0.00 4.00
2101 2331 1.432514 CGTTGGATGAGTGACACCTG 58.567 55.000 0.84 0.00 0.00 4.00
2102 2332 1.270305 CGTTGGATGAGTGACACCTGT 60.270 52.381 0.84 0.00 0.00 4.00
2103 2333 2.146342 GTTGGATGAGTGACACCTGTG 58.854 52.381 0.84 0.00 0.00 3.66
2104 2334 0.035317 TGGATGAGTGACACCTGTGC 59.965 55.000 0.84 0.00 0.00 4.57
2105 2335 0.674895 GGATGAGTGACACCTGTGCC 60.675 60.000 0.84 0.00 0.00 5.01
2106 2336 0.035317 GATGAGTGACACCTGTGCCA 59.965 55.000 0.84 0.00 0.00 4.92
2107 2337 0.473755 ATGAGTGACACCTGTGCCAA 59.526 50.000 0.84 0.00 0.00 4.52
2108 2338 0.463654 TGAGTGACACCTGTGCCAAC 60.464 55.000 0.84 0.00 0.00 3.77
2109 2339 1.498865 GAGTGACACCTGTGCCAACG 61.499 60.000 0.84 0.00 0.00 4.10
2110 2340 2.899838 TGACACCTGTGCCAACGC 60.900 61.111 0.00 0.00 0.00 4.84
2111 2341 4.012895 GACACCTGTGCCAACGCG 62.013 66.667 3.53 3.53 38.08 6.01
2114 2344 4.988598 ACCTGTGCCAACGCGGAG 62.989 66.667 12.47 1.20 38.08 4.63
2127 2357 4.498520 CGGAGCTGACGCGTGGAT 62.499 66.667 20.70 8.12 42.32 3.41
2128 2358 2.583593 GGAGCTGACGCGTGGATC 60.584 66.667 20.70 17.41 42.32 3.36
2129 2359 2.583593 GAGCTGACGCGTGGATCC 60.584 66.667 20.70 4.20 42.32 3.36
2130 2360 4.498520 AGCTGACGCGTGGATCCG 62.499 66.667 20.70 0.00 42.32 4.18
2131 2361 4.796231 GCTGACGCGTGGATCCGT 62.796 66.667 20.70 0.14 40.85 4.69
2135 2365 4.796231 ACGCGTGGATCCGTCAGC 62.796 66.667 12.93 8.73 31.00 4.26
2137 2367 4.492160 GCGTGGATCCGTCAGCGA 62.492 66.667 7.39 0.00 41.33 4.93
2138 2368 2.180769 CGTGGATCCGTCAGCGAA 59.819 61.111 7.39 0.00 41.33 4.70
2139 2369 1.226974 CGTGGATCCGTCAGCGAAT 60.227 57.895 7.39 0.00 41.33 3.34
2140 2370 1.482621 CGTGGATCCGTCAGCGAATG 61.483 60.000 7.39 0.00 41.33 2.67
2141 2371 0.179111 GTGGATCCGTCAGCGAATGA 60.179 55.000 7.39 0.00 41.33 2.57
2142 2372 0.103026 TGGATCCGTCAGCGAATGAG 59.897 55.000 7.39 0.00 39.07 2.90
2143 2373 1.218230 GGATCCGTCAGCGAATGAGC 61.218 60.000 0.00 0.00 39.07 4.26
2144 2374 0.528466 GATCCGTCAGCGAATGAGCA 60.528 55.000 0.00 0.00 39.07 4.26
2145 2375 0.105593 ATCCGTCAGCGAATGAGCAT 59.894 50.000 0.00 0.00 39.07 3.79
2146 2376 0.108186 TCCGTCAGCGAATGAGCATT 60.108 50.000 0.00 0.00 39.07 3.56
2147 2377 0.729116 CCGTCAGCGAATGAGCATTT 59.271 50.000 0.00 0.00 39.07 2.32
2148 2378 1.131126 CCGTCAGCGAATGAGCATTTT 59.869 47.619 0.00 0.00 39.07 1.82
2149 2379 2.351418 CCGTCAGCGAATGAGCATTTTA 59.649 45.455 0.00 0.00 39.07 1.52
2150 2380 3.345714 CGTCAGCGAATGAGCATTTTAC 58.654 45.455 0.00 0.00 39.07 2.01
2151 2381 3.181521 CGTCAGCGAATGAGCATTTTACA 60.182 43.478 0.00 0.00 39.07 2.41
2152 2382 4.091424 GTCAGCGAATGAGCATTTTACAC 58.909 43.478 0.00 0.00 39.07 2.90
2153 2383 3.750652 TCAGCGAATGAGCATTTTACACA 59.249 39.130 0.00 0.00 40.15 3.72
2154 2384 4.395854 TCAGCGAATGAGCATTTTACACAT 59.604 37.500 0.00 0.00 40.15 3.21
2155 2385 4.497966 CAGCGAATGAGCATTTTACACATG 59.502 41.667 0.00 0.00 40.15 3.21
2156 2386 3.792956 GCGAATGAGCATTTTACACATGG 59.207 43.478 0.00 0.00 37.05 3.66
2157 2387 4.438608 GCGAATGAGCATTTTACACATGGA 60.439 41.667 0.00 0.00 37.05 3.41
2158 2388 5.639757 CGAATGAGCATTTTACACATGGAA 58.360 37.500 0.00 0.00 0.00 3.53
2159 2389 6.092092 CGAATGAGCATTTTACACATGGAAA 58.908 36.000 0.00 0.00 0.00 3.13
2160 2390 6.585702 CGAATGAGCATTTTACACATGGAAAA 59.414 34.615 4.51 4.51 0.00 2.29
2161 2391 7.276218 CGAATGAGCATTTTACACATGGAAAAT 59.724 33.333 8.70 8.70 36.02 1.82
2162 2392 8.483307 AATGAGCATTTTACACATGGAAAATC 57.517 30.769 11.17 7.43 33.92 2.17
2163 2393 6.092092 TGAGCATTTTACACATGGAAAATCG 58.908 36.000 11.17 8.78 33.92 3.34
2164 2394 5.410067 AGCATTTTACACATGGAAAATCGG 58.590 37.500 11.17 4.14 33.92 4.18
2165 2395 4.032786 GCATTTTACACATGGAAAATCGGC 59.967 41.667 11.17 9.51 33.92 5.54
2166 2396 4.855715 TTTTACACATGGAAAATCGGCA 57.144 36.364 0.00 0.00 0.00 5.69
2167 2397 5.398603 TTTTACACATGGAAAATCGGCAT 57.601 34.783 0.00 0.00 0.00 4.40
2168 2398 5.398603 TTTACACATGGAAAATCGGCATT 57.601 34.783 0.00 0.00 0.00 3.56
2169 2399 3.235157 ACACATGGAAAATCGGCATTG 57.765 42.857 0.00 0.00 0.00 2.82
2170 2400 2.094078 ACACATGGAAAATCGGCATTGG 60.094 45.455 0.00 0.00 0.00 3.16
2171 2401 2.094078 CACATGGAAAATCGGCATTGGT 60.094 45.455 0.00 0.00 0.00 3.67
2172 2402 2.166254 ACATGGAAAATCGGCATTGGTC 59.834 45.455 0.00 0.00 0.00 4.02
2173 2403 0.808125 TGGAAAATCGGCATTGGTCG 59.192 50.000 0.00 0.00 45.31 4.79
2174 2404 0.808755 GGAAAATCGGCATTGGTCGT 59.191 50.000 0.00 0.00 44.04 4.34
2175 2405 1.467374 GGAAAATCGGCATTGGTCGTG 60.467 52.381 0.00 0.00 44.04 4.35
2176 2406 0.525761 AAAATCGGCATTGGTCGTGG 59.474 50.000 0.00 0.00 44.04 4.94
2177 2407 1.933115 AAATCGGCATTGGTCGTGGC 61.933 55.000 0.00 0.00 44.04 5.01
2178 2408 2.819984 AATCGGCATTGGTCGTGGCT 62.820 55.000 0.00 0.00 44.04 4.75
2179 2409 3.803082 CGGCATTGGTCGTGGCTG 61.803 66.667 0.00 0.00 39.73 4.85
2180 2410 2.672996 GGCATTGGTCGTGGCTGT 60.673 61.111 0.00 0.00 38.91 4.40
2181 2411 2.268076 GGCATTGGTCGTGGCTGTT 61.268 57.895 0.00 0.00 38.91 3.16
2182 2412 0.958382 GGCATTGGTCGTGGCTGTTA 60.958 55.000 0.00 0.00 38.91 2.41
2183 2413 0.878416 GCATTGGTCGTGGCTGTTAA 59.122 50.000 0.00 0.00 0.00 2.01
2184 2414 1.401018 GCATTGGTCGTGGCTGTTAAC 60.401 52.381 0.00 0.00 0.00 2.01
2185 2415 1.136085 CATTGGTCGTGGCTGTTAACG 60.136 52.381 0.26 0.00 41.11 3.18
2186 2416 0.881159 TTGGTCGTGGCTGTTAACGG 60.881 55.000 10.24 10.24 40.18 4.44
2187 2417 2.030958 GGTCGTGGCTGTTAACGGG 61.031 63.158 16.13 5.39 40.18 5.28
2188 2418 1.301165 GTCGTGGCTGTTAACGGGT 60.301 57.895 16.13 0.00 40.18 5.28
2189 2419 0.881600 GTCGTGGCTGTTAACGGGTT 60.882 55.000 16.13 0.00 40.18 4.11
2190 2420 0.678395 TCGTGGCTGTTAACGGGTTA 59.322 50.000 16.13 0.00 40.18 2.85
2191 2421 1.275856 TCGTGGCTGTTAACGGGTTAT 59.724 47.619 16.13 0.00 40.18 1.89
2192 2422 1.662122 CGTGGCTGTTAACGGGTTATC 59.338 52.381 16.13 0.00 36.17 1.75
2193 2423 1.662122 GTGGCTGTTAACGGGTTATCG 59.338 52.381 16.13 0.00 0.00 2.92
2194 2424 1.292992 GGCTGTTAACGGGTTATCGG 58.707 55.000 16.13 4.75 0.00 4.18
2195 2425 1.292992 GCTGTTAACGGGTTATCGGG 58.707 55.000 16.13 1.67 0.00 5.14
2196 2426 1.405933 GCTGTTAACGGGTTATCGGGT 60.406 52.381 16.13 0.00 0.00 5.28
2197 2427 2.543641 CTGTTAACGGGTTATCGGGTC 58.456 52.381 6.53 0.00 0.00 4.46
2198 2428 1.206849 TGTTAACGGGTTATCGGGTCC 59.793 52.381 0.26 0.00 0.00 4.46
2199 2429 1.206849 GTTAACGGGTTATCGGGTCCA 59.793 52.381 0.00 0.00 0.00 4.02
2200 2430 1.566211 TAACGGGTTATCGGGTCCAA 58.434 50.000 0.00 0.00 0.00 3.53
2201 2431 0.691904 AACGGGTTATCGGGTCCAAA 59.308 50.000 0.00 0.00 0.00 3.28
2202 2432 0.691904 ACGGGTTATCGGGTCCAAAA 59.308 50.000 0.00 0.00 0.00 2.44
2203 2433 1.282738 ACGGGTTATCGGGTCCAAAAT 59.717 47.619 0.00 0.00 0.00 1.82
2204 2434 1.944709 CGGGTTATCGGGTCCAAAATC 59.055 52.381 0.00 0.00 0.00 2.17
2205 2435 2.304092 GGGTTATCGGGTCCAAAATCC 58.696 52.381 0.00 0.00 0.00 3.01
2206 2436 1.944709 GGTTATCGGGTCCAAAATCCG 59.055 52.381 0.00 0.00 44.59 4.18
2209 2439 1.297364 TCGGGTCCAAAATCCGACC 59.703 57.895 0.00 0.00 46.48 4.79
2210 2440 1.196104 TCGGGTCCAAAATCCGACCT 61.196 55.000 6.22 0.00 46.48 3.85
2211 2441 1.024579 CGGGTCCAAAATCCGACCTG 61.025 60.000 6.22 3.61 46.56 4.00
2212 2442 0.326927 GGGTCCAAAATCCGACCTGA 59.673 55.000 6.22 0.00 46.56 3.86
2213 2443 1.064685 GGGTCCAAAATCCGACCTGAT 60.065 52.381 6.22 0.00 46.56 2.90
2214 2444 2.171870 GGGTCCAAAATCCGACCTGATA 59.828 50.000 6.22 0.00 46.56 2.15
2215 2445 3.467803 GGTCCAAAATCCGACCTGATAG 58.532 50.000 0.00 0.00 44.40 2.08
2216 2446 2.872858 GTCCAAAATCCGACCTGATAGC 59.127 50.000 0.00 0.00 0.00 2.97
2217 2447 2.771943 TCCAAAATCCGACCTGATAGCT 59.228 45.455 0.00 0.00 0.00 3.32
2218 2448 3.199946 TCCAAAATCCGACCTGATAGCTT 59.800 43.478 0.00 0.00 0.00 3.74
2219 2449 4.407621 TCCAAAATCCGACCTGATAGCTTA 59.592 41.667 0.00 0.00 0.00 3.09
2220 2450 5.104693 TCCAAAATCCGACCTGATAGCTTAA 60.105 40.000 0.00 0.00 0.00 1.85
2221 2451 5.007724 CCAAAATCCGACCTGATAGCTTAAC 59.992 44.000 0.00 0.00 0.00 2.01
2222 2452 3.644884 ATCCGACCTGATAGCTTAACG 57.355 47.619 0.00 0.00 0.00 3.18
2223 2453 1.679680 TCCGACCTGATAGCTTAACGG 59.320 52.381 0.00 0.00 40.36 4.44
2224 2454 1.488527 CGACCTGATAGCTTAACGGC 58.511 55.000 0.00 0.00 0.00 5.68
2225 2455 1.488527 GACCTGATAGCTTAACGGCG 58.511 55.000 4.80 4.80 37.29 6.46
2226 2456 0.822164 ACCTGATAGCTTAACGGCGT 59.178 50.000 6.77 6.77 37.29 5.68
2227 2457 1.206371 ACCTGATAGCTTAACGGCGTT 59.794 47.619 29.36 29.36 37.29 4.84
2228 2458 1.859080 CCTGATAGCTTAACGGCGTTC 59.141 52.381 30.35 15.28 37.29 3.95
2229 2459 1.859080 CTGATAGCTTAACGGCGTTCC 59.141 52.381 30.35 18.01 37.29 3.62
2239 2469 3.493213 GGCGTTCCGTTATGGTGG 58.507 61.111 0.00 0.00 39.52 4.61
2240 2470 1.078988 GGCGTTCCGTTATGGTGGA 60.079 57.895 0.00 0.00 39.52 4.02
2241 2471 0.463116 GGCGTTCCGTTATGGTGGAT 60.463 55.000 0.00 0.00 39.52 3.41
2242 2472 0.655733 GCGTTCCGTTATGGTGGATG 59.344 55.000 0.00 0.00 39.52 3.51
2243 2473 0.655733 CGTTCCGTTATGGTGGATGC 59.344 55.000 0.00 0.00 39.52 3.91
2244 2474 1.021968 GTTCCGTTATGGTGGATGCC 58.978 55.000 0.00 0.00 39.52 4.40
2245 2475 0.621082 TTCCGTTATGGTGGATGCCA 59.379 50.000 0.00 0.00 43.48 4.92
2253 2483 3.118454 GTGGATGCCACGTGTCGG 61.118 66.667 15.65 0.00 44.95 4.79
2254 2484 3.621805 TGGATGCCACGTGTCGGT 61.622 61.111 15.65 0.00 0.00 4.69
2255 2485 2.813908 GGATGCCACGTGTCGGTC 60.814 66.667 15.65 4.01 0.00 4.79
2256 2486 2.048597 GATGCCACGTGTCGGTCA 60.049 61.111 15.65 4.62 0.00 4.02
2257 2487 2.357034 ATGCCACGTGTCGGTCAC 60.357 61.111 15.65 0.00 43.03 3.67
2258 2488 3.876589 ATGCCACGTGTCGGTCACC 62.877 63.158 15.65 0.00 43.51 4.02
2260 2490 3.612681 CCACGTGTCGGTCACCCT 61.613 66.667 15.65 0.00 43.51 4.34
2261 2491 2.420043 CACGTGTCGGTCACCCTT 59.580 61.111 7.58 0.00 43.51 3.95
2262 2492 1.954146 CACGTGTCGGTCACCCTTG 60.954 63.158 7.58 0.00 43.51 3.61
2263 2493 2.129146 ACGTGTCGGTCACCCTTGA 61.129 57.895 0.00 0.00 43.51 3.02
2271 2501 3.000815 GTCACCCTTGACGAAAGCA 57.999 52.632 0.00 0.00 42.86 3.91
2272 2502 0.586802 GTCACCCTTGACGAAAGCAC 59.413 55.000 0.00 0.00 42.86 4.40
2273 2503 0.468226 TCACCCTTGACGAAAGCACT 59.532 50.000 0.00 0.00 34.24 4.40
2274 2504 1.134220 TCACCCTTGACGAAAGCACTT 60.134 47.619 0.00 0.00 34.24 3.16
2275 2505 1.264288 CACCCTTGACGAAAGCACTTC 59.736 52.381 0.00 0.00 34.24 3.01
2276 2506 1.141053 ACCCTTGACGAAAGCACTTCT 59.859 47.619 0.00 0.00 34.24 2.85
2277 2507 1.532868 CCCTTGACGAAAGCACTTCTG 59.467 52.381 0.00 0.00 34.24 3.02
2278 2508 2.213499 CCTTGACGAAAGCACTTCTGT 58.787 47.619 0.00 0.00 34.24 3.41
2279 2509 2.032549 CCTTGACGAAAGCACTTCTGTG 60.033 50.000 0.00 0.00 46.37 3.66
2280 2510 2.595124 TGACGAAAGCACTTCTGTGA 57.405 45.000 0.00 0.00 46.55 3.58
2281 2511 3.111853 TGACGAAAGCACTTCTGTGAT 57.888 42.857 0.00 0.00 46.55 3.06
2282 2512 2.802247 TGACGAAAGCACTTCTGTGATG 59.198 45.455 0.00 0.00 46.55 3.07
2283 2513 1.532868 ACGAAAGCACTTCTGTGATGC 59.467 47.619 0.00 0.00 46.55 3.91
2284 2514 1.463034 CGAAAGCACTTCTGTGATGCG 60.463 52.381 0.00 0.00 46.55 4.73
2285 2515 0.239347 AAAGCACTTCTGTGATGCGC 59.761 50.000 0.00 0.00 46.55 6.09
2286 2516 1.904852 AAGCACTTCTGTGATGCGCG 61.905 55.000 0.00 0.00 46.55 6.86
2287 2517 2.382746 GCACTTCTGTGATGCGCGA 61.383 57.895 12.10 0.00 46.55 5.87
2288 2518 1.699656 GCACTTCTGTGATGCGCGAT 61.700 55.000 12.10 0.00 46.55 4.58
2289 2519 0.723414 CACTTCTGTGATGCGCGATT 59.277 50.000 12.10 0.00 46.55 3.34
2290 2520 1.129251 CACTTCTGTGATGCGCGATTT 59.871 47.619 12.10 0.00 46.55 2.17
2291 2521 2.348362 CACTTCTGTGATGCGCGATTTA 59.652 45.455 12.10 0.00 46.55 1.40
2292 2522 3.001634 CACTTCTGTGATGCGCGATTTAT 59.998 43.478 12.10 0.00 46.55 1.40
2293 2523 3.246226 ACTTCTGTGATGCGCGATTTATC 59.754 43.478 12.10 8.21 0.00 1.75
2306 2536 4.120646 CGATTTATCGTCATGGAAGTGC 57.879 45.455 4.03 0.00 44.74 4.40
2307 2537 3.555547 CGATTTATCGTCATGGAAGTGCA 59.444 43.478 4.03 0.00 44.74 4.57
2308 2538 4.550831 CGATTTATCGTCATGGAAGTGCAC 60.551 45.833 9.40 9.40 44.74 4.57
2309 2539 3.326836 TTATCGTCATGGAAGTGCACA 57.673 42.857 21.04 0.00 0.00 4.57
2310 2540 1.442769 ATCGTCATGGAAGTGCACAC 58.557 50.000 21.04 12.41 0.00 3.82
2311 2541 0.392706 TCGTCATGGAAGTGCACACT 59.607 50.000 21.04 5.23 44.94 3.55
2320 2550 2.918571 AGTGCACACTTCCGTGATG 58.081 52.632 21.04 0.00 43.97 3.07
2321 2551 0.392706 AGTGCACACTTCCGTGATGA 59.607 50.000 21.04 0.00 43.97 2.92
2322 2552 1.002430 AGTGCACACTTCCGTGATGAT 59.998 47.619 21.04 0.00 43.97 2.45
2323 2553 2.233676 AGTGCACACTTCCGTGATGATA 59.766 45.455 21.04 0.00 43.97 2.15
2324 2554 3.000041 GTGCACACTTCCGTGATGATAA 59.000 45.455 13.17 0.00 43.97 1.75
2325 2555 3.623060 GTGCACACTTCCGTGATGATAAT 59.377 43.478 13.17 0.00 43.97 1.28
2326 2556 4.094887 GTGCACACTTCCGTGATGATAATT 59.905 41.667 13.17 0.00 43.97 1.40
2327 2557 4.699735 TGCACACTTCCGTGATGATAATTT 59.300 37.500 0.00 0.00 43.97 1.82
2328 2558 5.182950 TGCACACTTCCGTGATGATAATTTT 59.817 36.000 0.00 0.00 43.97 1.82
2329 2559 5.512788 GCACACTTCCGTGATGATAATTTTG 59.487 40.000 0.00 0.00 43.97 2.44
2330 2560 6.029607 CACACTTCCGTGATGATAATTTTGG 58.970 40.000 0.00 0.00 43.97 3.28
2331 2561 5.036737 CACTTCCGTGATGATAATTTTGGC 58.963 41.667 0.00 0.00 43.97 4.52
2332 2562 4.704540 ACTTCCGTGATGATAATTTTGGCA 59.295 37.500 0.00 0.00 0.00 4.92
2333 2563 5.184864 ACTTCCGTGATGATAATTTTGGCAA 59.815 36.000 0.00 0.00 0.00 4.52
2334 2564 5.850557 TCCGTGATGATAATTTTGGCAAT 57.149 34.783 0.00 0.00 0.00 3.56
2335 2565 5.590145 TCCGTGATGATAATTTTGGCAATG 58.410 37.500 0.00 0.00 0.00 2.82
2336 2566 5.126869 TCCGTGATGATAATTTTGGCAATGT 59.873 36.000 0.00 0.00 0.00 2.71
2337 2567 5.459762 CCGTGATGATAATTTTGGCAATGTC 59.540 40.000 0.00 0.00 0.00 3.06
2338 2568 6.035217 CGTGATGATAATTTTGGCAATGTCA 58.965 36.000 0.00 0.60 0.00 3.58
2339 2569 6.698329 CGTGATGATAATTTTGGCAATGTCAT 59.302 34.615 10.20 10.20 0.00 3.06
2340 2570 7.306341 CGTGATGATAATTTTGGCAATGTCATG 60.306 37.037 13.91 6.46 0.00 3.07
2341 2571 6.987404 TGATGATAATTTTGGCAATGTCATGG 59.013 34.615 13.91 0.00 0.00 3.66
2342 2572 6.541934 TGATAATTTTGGCAATGTCATGGA 57.458 33.333 0.00 0.00 0.00 3.41
2343 2573 6.944096 TGATAATTTTGGCAATGTCATGGAA 58.056 32.000 0.00 0.00 0.00 3.53
2344 2574 6.817641 TGATAATTTTGGCAATGTCATGGAAC 59.182 34.615 0.00 0.00 0.00 3.62
2358 2588 2.380084 TGGAACACTTCTATGACGGC 57.620 50.000 0.00 0.00 0.00 5.68
2359 2589 1.621317 TGGAACACTTCTATGACGGCA 59.379 47.619 0.00 0.00 0.00 5.69
2360 2590 2.000447 GGAACACTTCTATGACGGCAC 59.000 52.381 0.00 0.00 0.00 5.01
2361 2591 2.611971 GGAACACTTCTATGACGGCACA 60.612 50.000 0.00 0.00 0.00 4.57
2362 2592 2.370281 ACACTTCTATGACGGCACAG 57.630 50.000 0.00 0.00 0.00 3.66
2363 2593 1.066858 ACACTTCTATGACGGCACAGG 60.067 52.381 0.00 0.00 0.00 4.00
2364 2594 1.066858 CACTTCTATGACGGCACAGGT 60.067 52.381 0.00 0.00 0.00 4.00
2365 2595 2.165641 CACTTCTATGACGGCACAGGTA 59.834 50.000 0.00 0.00 0.00 3.08
2366 2596 3.031736 ACTTCTATGACGGCACAGGTAT 58.968 45.455 0.00 0.00 0.00 2.73
2367 2597 3.181475 ACTTCTATGACGGCACAGGTATG 60.181 47.826 0.00 0.00 0.00 2.39
2368 2598 2.661718 TCTATGACGGCACAGGTATGA 58.338 47.619 0.00 0.00 0.00 2.15
2369 2599 2.361119 TCTATGACGGCACAGGTATGAC 59.639 50.000 0.00 0.00 0.00 3.06
2370 2600 1.195115 ATGACGGCACAGGTATGACT 58.805 50.000 0.00 0.00 0.00 3.41
2371 2601 1.842052 TGACGGCACAGGTATGACTA 58.158 50.000 0.00 0.00 0.00 2.59
2372 2602 2.384828 TGACGGCACAGGTATGACTAT 58.615 47.619 0.00 0.00 0.00 2.12
2373 2603 2.361119 TGACGGCACAGGTATGACTATC 59.639 50.000 0.00 0.00 0.00 2.08
2374 2604 2.623889 GACGGCACAGGTATGACTATCT 59.376 50.000 0.00 0.00 0.00 1.98
2375 2605 3.031736 ACGGCACAGGTATGACTATCTT 58.968 45.455 0.00 0.00 0.00 2.40
2376 2606 3.181475 ACGGCACAGGTATGACTATCTTG 60.181 47.826 0.00 0.00 0.00 3.02
2377 2607 3.068165 CGGCACAGGTATGACTATCTTGA 59.932 47.826 0.00 0.00 0.00 3.02
2378 2608 4.262207 CGGCACAGGTATGACTATCTTGAT 60.262 45.833 0.00 0.00 0.00 2.57
2379 2609 5.615289 GGCACAGGTATGACTATCTTGATT 58.385 41.667 0.00 0.00 0.00 2.57
2380 2610 5.698545 GGCACAGGTATGACTATCTTGATTC 59.301 44.000 0.00 0.00 0.00 2.52
2381 2611 6.463614 GGCACAGGTATGACTATCTTGATTCT 60.464 42.308 0.00 0.00 0.00 2.40
2382 2612 6.423302 GCACAGGTATGACTATCTTGATTCTG 59.577 42.308 0.00 0.00 0.00 3.02
2383 2613 7.495901 CACAGGTATGACTATCTTGATTCTGT 58.504 38.462 0.00 0.00 0.00 3.41
2384 2614 7.651304 CACAGGTATGACTATCTTGATTCTGTC 59.349 40.741 0.00 0.00 0.00 3.51
2385 2615 7.343057 ACAGGTATGACTATCTTGATTCTGTCA 59.657 37.037 12.36 12.36 38.52 3.58
2386 2616 8.366401 CAGGTATGACTATCTTGATTCTGTCAT 58.634 37.037 19.47 19.47 44.19 3.06
2387 2617 9.593565 AGGTATGACTATCTTGATTCTGTCATA 57.406 33.333 18.29 18.29 42.64 2.15
2399 2629 9.297586 CTTGATTCTGTCATAAATTTGTCATGG 57.702 33.333 0.00 0.00 36.54 3.66
2400 2630 8.578448 TGATTCTGTCATAAATTTGTCATGGA 57.422 30.769 0.00 0.00 0.00 3.41
2401 2631 9.192642 TGATTCTGTCATAAATTTGTCATGGAT 57.807 29.630 0.00 0.00 0.00 3.41
2402 2632 9.459640 GATTCTGTCATAAATTTGTCATGGATG 57.540 33.333 0.00 0.00 0.00 3.51
2403 2633 7.943079 TCTGTCATAAATTTGTCATGGATGT 57.057 32.000 0.00 0.00 0.00 3.06
2404 2634 9.460019 TTCTGTCATAAATTTGTCATGGATGTA 57.540 29.630 0.00 0.00 0.00 2.29
2405 2635 8.892723 TCTGTCATAAATTTGTCATGGATGTAC 58.107 33.333 0.00 0.00 0.00 2.90
2406 2636 8.572855 TGTCATAAATTTGTCATGGATGTACA 57.427 30.769 0.00 0.00 0.00 2.90
2407 2637 9.187996 TGTCATAAATTTGTCATGGATGTACAT 57.812 29.630 8.43 8.43 0.00 2.29
2409 2639 8.136800 TCATAAATTTGTCATGGATGTACATGC 58.863 33.333 19.53 19.53 46.02 4.06
2410 2640 5.918426 AATTTGTCATGGATGTACATGCA 57.082 34.783 29.03 29.03 46.02 3.96
2418 2648 5.918426 ATGGATGTACATGCATGACAAAA 57.082 34.783 33.87 18.90 46.05 2.44
2419 2649 5.718724 TGGATGTACATGCATGACAAAAA 57.281 34.783 32.75 16.53 34.14 1.94
2435 2665 2.228138 AAAAACGCGACCTACTGTGA 57.772 45.000 15.93 0.00 0.00 3.58
2436 2666 1.494824 AAAACGCGACCTACTGTGAC 58.505 50.000 15.93 0.00 0.00 3.67
2437 2667 0.386476 AAACGCGACCTACTGTGACA 59.614 50.000 15.93 0.00 0.00 3.58
2438 2668 0.386476 AACGCGACCTACTGTGACAA 59.614 50.000 15.93 0.00 0.00 3.18
2439 2669 0.386476 ACGCGACCTACTGTGACAAA 59.614 50.000 15.93 0.00 0.00 2.83
2440 2670 0.782384 CGCGACCTACTGTGACAAAC 59.218 55.000 0.00 0.00 0.00 2.93
2441 2671 1.860676 GCGACCTACTGTGACAAACA 58.139 50.000 0.00 0.00 37.22 2.83
2454 2684 2.990514 TGACAAACACGTATCATCACGG 59.009 45.455 0.00 0.00 46.12 4.94
2455 2685 3.247442 GACAAACACGTATCATCACGGA 58.753 45.455 0.00 0.00 46.12 4.69
2456 2686 3.655486 ACAAACACGTATCATCACGGAA 58.345 40.909 0.00 0.00 46.12 4.30
2457 2687 3.678072 ACAAACACGTATCATCACGGAAG 59.322 43.478 0.00 0.00 46.12 3.46
2544 2774 4.802051 CCTCGTGGGCCCATGGTG 62.802 72.222 38.09 29.66 33.99 4.17
2545 2775 4.802051 CTCGTGGGCCCATGGTGG 62.802 72.222 38.09 25.40 37.25 4.61
2560 2790 4.620673 TGGCCCCCTCCACTTATT 57.379 55.556 0.00 0.00 0.00 1.40
2561 2791 2.813605 TGGCCCCCTCCACTTATTT 58.186 52.632 0.00 0.00 0.00 1.40
2562 2792 0.629058 TGGCCCCCTCCACTTATTTC 59.371 55.000 0.00 0.00 0.00 2.17
2563 2793 0.927029 GGCCCCCTCCACTTATTTCT 59.073 55.000 0.00 0.00 0.00 2.52
2564 2794 1.410224 GGCCCCCTCCACTTATTTCTG 60.410 57.143 0.00 0.00 0.00 3.02
2565 2795 2.024306 GCCCCCTCCACTTATTTCTGC 61.024 57.143 0.00 0.00 0.00 4.26
2566 2796 1.284785 CCCCCTCCACTTATTTCTGCA 59.715 52.381 0.00 0.00 0.00 4.41
2567 2797 2.369394 CCCCTCCACTTATTTCTGCAC 58.631 52.381 0.00 0.00 0.00 4.57
2568 2798 2.369394 CCCTCCACTTATTTCTGCACC 58.631 52.381 0.00 0.00 0.00 5.01
2569 2799 2.369394 CCTCCACTTATTTCTGCACCC 58.631 52.381 0.00 0.00 0.00 4.61
2570 2800 2.025887 CCTCCACTTATTTCTGCACCCT 60.026 50.000 0.00 0.00 0.00 4.34
2571 2801 3.274288 CTCCACTTATTTCTGCACCCTC 58.726 50.000 0.00 0.00 0.00 4.30
2572 2802 2.912956 TCCACTTATTTCTGCACCCTCT 59.087 45.455 0.00 0.00 0.00 3.69
2573 2803 3.055094 TCCACTTATTTCTGCACCCTCTC 60.055 47.826 0.00 0.00 0.00 3.20
2574 2804 3.307691 CCACTTATTTCTGCACCCTCTCA 60.308 47.826 0.00 0.00 0.00 3.27
2575 2805 3.686726 CACTTATTTCTGCACCCTCTCAC 59.313 47.826 0.00 0.00 0.00 3.51
2576 2806 3.584848 ACTTATTTCTGCACCCTCTCACT 59.415 43.478 0.00 0.00 0.00 3.41
2577 2807 4.042187 ACTTATTTCTGCACCCTCTCACTT 59.958 41.667 0.00 0.00 0.00 3.16
2578 2808 2.550830 TTTCTGCACCCTCTCACTTC 57.449 50.000 0.00 0.00 0.00 3.01
2579 2809 1.722034 TTCTGCACCCTCTCACTTCT 58.278 50.000 0.00 0.00 0.00 2.85
2580 2810 1.722034 TCTGCACCCTCTCACTTCTT 58.278 50.000 0.00 0.00 0.00 2.52
2581 2811 1.620819 TCTGCACCCTCTCACTTCTTC 59.379 52.381 0.00 0.00 0.00 2.87
2582 2812 1.622811 CTGCACCCTCTCACTTCTTCT 59.377 52.381 0.00 0.00 0.00 2.85
2583 2813 2.038295 CTGCACCCTCTCACTTCTTCTT 59.962 50.000 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.009002 TGAAGAATGGTTTCGCATCATCA 58.991 39.130 0.00 0.00 36.93 3.07
50 51 4.584743 ACTGGGAAAGTGAAGAATGGTTTC 59.415 41.667 0.00 0.00 37.88 2.78
92 93 5.431420 AATTATGAAGAACACAACACGCA 57.569 34.783 0.00 0.00 0.00 5.24
425 426 9.836864 AACATATAGAAGATACAATCTGCACAA 57.163 29.630 0.00 0.00 40.13 3.33
481 482 7.361127 CAGCCATCAAAATGTTGCAATAAAAA 58.639 30.769 0.59 0.00 34.50 1.94
692 782 0.481128 ATGACCCCACTTTTTCCGGT 59.519 50.000 0.00 0.00 0.00 5.28
839 931 6.551227 TCAGAGGTGATAGCTAGCTTGAATTA 59.449 38.462 24.88 3.35 0.00 1.40
906 998 4.935352 TTCTTCAAATTGACAACCCTGG 57.065 40.909 0.00 0.00 0.00 4.45
975 1068 3.334583 TGACCTGCATAGTGTTCTTCC 57.665 47.619 0.00 0.00 0.00 3.46
1507 1608 2.039480 AGCTTCATGAAGGCTCTTGTCA 59.961 45.455 31.41 0.00 38.80 3.58
1656 1767 6.969043 ACAGGTTCACATTCCAAATATCCTA 58.031 36.000 0.00 0.00 0.00 2.94
2022 2252 1.209261 CCAAAAGTGGCCCACAAAGTT 59.791 47.619 17.80 0.00 38.35 2.66
2023 2253 0.829990 CCAAAAGTGGCCCACAAAGT 59.170 50.000 17.80 0.00 38.35 2.66
2024 2254 0.106521 CCCAAAAGTGGCCCACAAAG 59.893 55.000 17.80 2.64 44.46 2.77
2025 2255 1.977293 GCCCAAAAGTGGCCCACAAA 61.977 55.000 17.80 0.00 44.46 2.83
2026 2256 2.439104 GCCCAAAAGTGGCCCACAA 61.439 57.895 17.80 0.00 44.46 3.33
2027 2257 2.841988 GCCCAAAAGTGGCCCACA 60.842 61.111 17.80 0.00 44.46 4.17
2033 2263 2.989253 GGACCGGCCCAAAAGTGG 60.989 66.667 0.00 0.00 45.53 4.00
2034 2264 2.203422 TGGACCGGCCCAAAAGTG 60.203 61.111 7.19 0.00 34.97 3.16
2035 2265 2.203437 GTGGACCGGCCCAAAAGT 60.203 61.111 12.64 0.00 38.06 2.66
2036 2266 3.361977 CGTGGACCGGCCCAAAAG 61.362 66.667 12.64 1.92 38.06 2.27
2037 2267 4.192453 ACGTGGACCGGCCCAAAA 62.192 61.111 12.64 0.00 42.24 2.44
2038 2268 4.939368 CACGTGGACCGGCCCAAA 62.939 66.667 12.64 0.00 42.24 3.28
2042 2272 4.612412 TTGACACGTGGACCGGCC 62.612 66.667 21.57 4.32 42.24 6.13
2043 2273 3.343421 GTTGACACGTGGACCGGC 61.343 66.667 21.57 0.00 42.24 6.13
2044 2274 0.038067 TATGTTGACACGTGGACCGG 60.038 55.000 21.57 0.00 42.24 5.28
2045 2275 1.924524 GATATGTTGACACGTGGACCG 59.075 52.381 21.57 0.00 44.03 4.79
2046 2276 2.967362 TGATATGTTGACACGTGGACC 58.033 47.619 21.57 9.12 0.00 4.46
2047 2277 4.745125 CCTATGATATGTTGACACGTGGAC 59.255 45.833 21.57 15.27 0.00 4.02
2048 2278 4.739436 GCCTATGATATGTTGACACGTGGA 60.739 45.833 21.57 2.52 0.00 4.02
2049 2279 3.494626 GCCTATGATATGTTGACACGTGG 59.505 47.826 21.57 1.66 0.00 4.94
2050 2280 3.494626 GGCCTATGATATGTTGACACGTG 59.505 47.826 15.48 15.48 0.00 4.49
2051 2281 3.494398 GGGCCTATGATATGTTGACACGT 60.494 47.826 0.84 0.00 0.00 4.49
2052 2282 3.067106 GGGCCTATGATATGTTGACACG 58.933 50.000 0.84 0.00 0.00 4.49
2053 2283 4.085357 TGGGCCTATGATATGTTGACAC 57.915 45.455 4.53 0.00 0.00 3.67
2054 2284 4.598807 AGATGGGCCTATGATATGTTGACA 59.401 41.667 6.22 0.00 0.00 3.58
2055 2285 5.171339 AGATGGGCCTATGATATGTTGAC 57.829 43.478 6.22 0.00 0.00 3.18
2056 2286 4.081476 CGAGATGGGCCTATGATATGTTGA 60.081 45.833 6.22 0.00 0.00 3.18
2057 2287 4.081476 TCGAGATGGGCCTATGATATGTTG 60.081 45.833 6.22 0.00 0.00 3.33
2058 2288 4.081420 GTCGAGATGGGCCTATGATATGTT 60.081 45.833 6.22 0.00 0.00 2.71
2059 2289 3.449018 GTCGAGATGGGCCTATGATATGT 59.551 47.826 6.22 0.00 0.00 2.29
2060 2290 3.181471 GGTCGAGATGGGCCTATGATATG 60.181 52.174 6.22 0.00 0.00 1.78
2061 2291 3.034635 GGTCGAGATGGGCCTATGATAT 58.965 50.000 6.22 0.00 0.00 1.63
2062 2292 2.457598 GGTCGAGATGGGCCTATGATA 58.542 52.381 6.22 0.00 0.00 2.15
2063 2293 1.270907 GGTCGAGATGGGCCTATGAT 58.729 55.000 6.22 0.00 0.00 2.45
2064 2294 1.179174 CGGTCGAGATGGGCCTATGA 61.179 60.000 6.22 0.00 0.00 2.15
2065 2295 1.290324 CGGTCGAGATGGGCCTATG 59.710 63.158 6.22 0.00 0.00 2.23
2066 2296 0.759436 AACGGTCGAGATGGGCCTAT 60.759 55.000 0.00 0.00 0.00 2.57
2067 2297 1.380785 AACGGTCGAGATGGGCCTA 60.381 57.895 4.53 0.00 0.00 3.93
2068 2298 2.683933 AACGGTCGAGATGGGCCT 60.684 61.111 4.53 0.00 0.00 5.19
2069 2299 2.511600 CAACGGTCGAGATGGGCC 60.512 66.667 0.00 0.00 0.00 5.80
2070 2300 2.311688 ATCCAACGGTCGAGATGGGC 62.312 60.000 0.00 0.00 33.66 5.36
2071 2301 0.530650 CATCCAACGGTCGAGATGGG 60.531 60.000 0.00 0.00 33.92 4.00
2072 2302 0.459899 TCATCCAACGGTCGAGATGG 59.540 55.000 9.42 3.05 37.35 3.51
2073 2303 1.135139 ACTCATCCAACGGTCGAGATG 59.865 52.381 4.21 4.21 37.95 2.90
2074 2304 1.135139 CACTCATCCAACGGTCGAGAT 59.865 52.381 0.00 0.00 0.00 2.75
2075 2305 0.526211 CACTCATCCAACGGTCGAGA 59.474 55.000 0.00 0.00 0.00 4.04
2076 2306 0.526211 TCACTCATCCAACGGTCGAG 59.474 55.000 0.00 0.00 0.00 4.04
2077 2307 0.242825 GTCACTCATCCAACGGTCGA 59.757 55.000 0.00 0.00 0.00 4.20
2078 2308 0.038618 TGTCACTCATCCAACGGTCG 60.039 55.000 0.00 0.00 0.00 4.79
2079 2309 1.429463 GTGTCACTCATCCAACGGTC 58.571 55.000 0.00 0.00 0.00 4.79
2080 2310 0.034896 GGTGTCACTCATCCAACGGT 59.965 55.000 2.35 0.00 0.00 4.83
2081 2311 0.321671 AGGTGTCACTCATCCAACGG 59.678 55.000 2.35 0.00 0.00 4.44
2082 2312 1.270305 ACAGGTGTCACTCATCCAACG 60.270 52.381 2.35 0.00 0.00 4.10
2083 2313 2.146342 CACAGGTGTCACTCATCCAAC 58.854 52.381 2.35 0.00 0.00 3.77
2084 2314 1.543208 GCACAGGTGTCACTCATCCAA 60.543 52.381 2.35 0.00 0.00 3.53
2085 2315 0.035317 GCACAGGTGTCACTCATCCA 59.965 55.000 2.35 0.00 0.00 3.41
2086 2316 0.674895 GGCACAGGTGTCACTCATCC 60.675 60.000 2.35 0.00 34.82 3.51
2087 2317 0.035317 TGGCACAGGTGTCACTCATC 59.965 55.000 2.00 0.00 40.71 2.92
2088 2318 0.473755 TTGGCACAGGTGTCACTCAT 59.526 50.000 6.16 0.00 45.83 2.90
2089 2319 0.463654 GTTGGCACAGGTGTCACTCA 60.464 55.000 6.16 0.00 45.83 3.41
2090 2320 1.498865 CGTTGGCACAGGTGTCACTC 61.499 60.000 6.16 2.66 45.83 3.51
2091 2321 1.523711 CGTTGGCACAGGTGTCACT 60.524 57.895 6.16 0.00 45.83 3.41
2092 2322 3.022287 CGTTGGCACAGGTGTCAC 58.978 61.111 6.16 1.87 45.83 3.67
2093 2323 2.899838 GCGTTGGCACAGGTGTCA 60.900 61.111 2.00 2.00 44.33 3.58
2094 2324 4.012895 CGCGTTGGCACAGGTGTC 62.013 66.667 0.00 0.00 42.39 3.67
2097 2327 4.988598 CTCCGCGTTGGCACAGGT 62.989 66.667 4.92 0.00 42.39 4.00
2110 2340 4.498520 ATCCACGCGTCAGCTCCG 62.499 66.667 9.86 0.00 42.32 4.63
2111 2341 2.583593 GATCCACGCGTCAGCTCC 60.584 66.667 9.86 0.00 42.32 4.70
2112 2342 2.583593 GGATCCACGCGTCAGCTC 60.584 66.667 9.86 4.80 42.32 4.09
2113 2343 4.498520 CGGATCCACGCGTCAGCT 62.499 66.667 9.86 0.00 42.32 4.24
2114 2344 4.796231 ACGGATCCACGCGTCAGC 62.796 66.667 9.86 0.48 37.37 4.26
2115 2345 2.579787 GACGGATCCACGCGTCAG 60.580 66.667 9.86 3.57 39.80 3.51
2116 2346 3.336715 CTGACGGATCCACGCGTCA 62.337 63.158 9.86 19.31 43.77 4.35
2117 2347 2.579787 CTGACGGATCCACGCGTC 60.580 66.667 9.86 13.35 40.15 5.19
2118 2348 4.796231 GCTGACGGATCCACGCGT 62.796 66.667 5.58 5.58 37.37 6.01
2120 2350 3.982372 TTCGCTGACGGATCCACGC 62.982 63.158 13.41 11.40 40.63 5.34
2121 2351 1.226974 ATTCGCTGACGGATCCACG 60.227 57.895 13.41 7.14 28.72 4.94
2122 2352 0.179111 TCATTCGCTGACGGATCCAC 60.179 55.000 13.41 5.76 34.38 4.02
2123 2353 0.103026 CTCATTCGCTGACGGATCCA 59.897 55.000 13.41 0.00 34.38 3.41
2124 2354 1.218230 GCTCATTCGCTGACGGATCC 61.218 60.000 0.00 0.00 34.38 3.36
2125 2355 0.528466 TGCTCATTCGCTGACGGATC 60.528 55.000 0.00 0.00 34.38 3.36
2126 2356 0.105593 ATGCTCATTCGCTGACGGAT 59.894 50.000 0.00 0.00 38.32 4.18
2127 2357 0.108186 AATGCTCATTCGCTGACGGA 60.108 50.000 0.00 0.00 40.63 4.69
2128 2358 0.729116 AAATGCTCATTCGCTGACGG 59.271 50.000 0.00 0.00 40.63 4.79
2129 2359 2.532531 AAAATGCTCATTCGCTGACG 57.467 45.000 0.00 0.00 42.01 4.35
2130 2360 4.091424 GTGTAAAATGCTCATTCGCTGAC 58.909 43.478 0.00 0.00 0.00 3.51
2131 2361 3.750652 TGTGTAAAATGCTCATTCGCTGA 59.249 39.130 0.00 0.00 0.00 4.26
2132 2362 4.082274 TGTGTAAAATGCTCATTCGCTG 57.918 40.909 0.00 0.00 0.00 5.18
2133 2363 4.439153 CCATGTGTAAAATGCTCATTCGCT 60.439 41.667 0.00 0.00 26.98 4.93
2134 2364 3.792956 CCATGTGTAAAATGCTCATTCGC 59.207 43.478 0.00 0.00 26.98 4.70
2135 2365 5.233957 TCCATGTGTAAAATGCTCATTCG 57.766 39.130 0.00 0.00 26.98 3.34
2136 2366 7.887996 TTTTCCATGTGTAAAATGCTCATTC 57.112 32.000 0.00 0.00 26.98 2.67
2137 2367 7.276218 CGATTTTCCATGTGTAAAATGCTCATT 59.724 33.333 12.66 0.00 26.98 2.57
2138 2368 6.753279 CGATTTTCCATGTGTAAAATGCTCAT 59.247 34.615 12.66 0.00 26.98 2.90
2139 2369 6.092092 CGATTTTCCATGTGTAAAATGCTCA 58.908 36.000 12.66 0.00 26.98 4.26
2140 2370 5.516339 CCGATTTTCCATGTGTAAAATGCTC 59.484 40.000 12.66 3.06 26.98 4.26
2141 2371 5.410067 CCGATTTTCCATGTGTAAAATGCT 58.590 37.500 12.66 0.00 26.98 3.79
2142 2372 4.032786 GCCGATTTTCCATGTGTAAAATGC 59.967 41.667 12.66 8.79 26.98 3.56
2143 2373 5.167121 TGCCGATTTTCCATGTGTAAAATG 58.833 37.500 12.66 7.44 30.65 2.32
2144 2374 5.398603 TGCCGATTTTCCATGTGTAAAAT 57.601 34.783 9.25 9.25 30.65 1.82
2145 2375 4.855715 TGCCGATTTTCCATGTGTAAAA 57.144 36.364 0.00 0.00 0.00 1.52
2146 2376 5.167121 CAATGCCGATTTTCCATGTGTAAA 58.833 37.500 0.00 0.00 0.00 2.01
2147 2377 4.381398 CCAATGCCGATTTTCCATGTGTAA 60.381 41.667 0.00 0.00 0.00 2.41
2148 2378 3.130164 CCAATGCCGATTTTCCATGTGTA 59.870 43.478 0.00 0.00 0.00 2.90
2149 2379 2.094078 CCAATGCCGATTTTCCATGTGT 60.094 45.455 0.00 0.00 0.00 3.72
2150 2380 2.094078 ACCAATGCCGATTTTCCATGTG 60.094 45.455 0.00 0.00 0.00 3.21
2151 2381 2.166254 GACCAATGCCGATTTTCCATGT 59.834 45.455 0.00 0.00 0.00 3.21
2152 2382 2.795681 CGACCAATGCCGATTTTCCATG 60.796 50.000 0.00 0.00 0.00 3.66
2153 2383 1.405105 CGACCAATGCCGATTTTCCAT 59.595 47.619 0.00 0.00 0.00 3.41
2154 2384 0.808125 CGACCAATGCCGATTTTCCA 59.192 50.000 0.00 0.00 0.00 3.53
2155 2385 0.808755 ACGACCAATGCCGATTTTCC 59.191 50.000 0.00 0.00 0.00 3.13
2156 2386 1.467374 CCACGACCAATGCCGATTTTC 60.467 52.381 0.00 0.00 0.00 2.29
2157 2387 0.525761 CCACGACCAATGCCGATTTT 59.474 50.000 0.00 0.00 0.00 1.82
2158 2388 1.933115 GCCACGACCAATGCCGATTT 61.933 55.000 0.00 0.00 0.00 2.17
2159 2389 2.406616 GCCACGACCAATGCCGATT 61.407 57.895 0.00 0.00 0.00 3.34
2160 2390 2.824041 GCCACGACCAATGCCGAT 60.824 61.111 0.00 0.00 0.00 4.18
2161 2391 4.015406 AGCCACGACCAATGCCGA 62.015 61.111 0.00 0.00 0.00 5.54
2162 2392 3.803082 CAGCCACGACCAATGCCG 61.803 66.667 0.00 0.00 0.00 5.69
2163 2393 0.958382 TAACAGCCACGACCAATGCC 60.958 55.000 0.00 0.00 0.00 4.40
2164 2394 0.878416 TTAACAGCCACGACCAATGC 59.122 50.000 0.00 0.00 0.00 3.56
2165 2395 1.136085 CGTTAACAGCCACGACCAATG 60.136 52.381 6.39 0.00 38.76 2.82
2166 2396 1.153353 CGTTAACAGCCACGACCAAT 58.847 50.000 6.39 0.00 38.76 3.16
2167 2397 0.881159 CCGTTAACAGCCACGACCAA 60.881 55.000 6.39 0.00 38.76 3.67
2168 2398 1.301087 CCGTTAACAGCCACGACCA 60.301 57.895 6.39 0.00 38.76 4.02
2169 2399 2.030958 CCCGTTAACAGCCACGACC 61.031 63.158 6.39 0.00 38.76 4.79
2170 2400 0.881600 AACCCGTTAACAGCCACGAC 60.882 55.000 6.39 0.00 38.76 4.34
2171 2401 0.678395 TAACCCGTTAACAGCCACGA 59.322 50.000 6.39 0.00 38.76 4.35
2172 2402 1.662122 GATAACCCGTTAACAGCCACG 59.338 52.381 6.39 0.00 36.12 4.94
2173 2403 1.662122 CGATAACCCGTTAACAGCCAC 59.338 52.381 6.39 0.00 0.00 5.01
2174 2404 1.405797 CCGATAACCCGTTAACAGCCA 60.406 52.381 6.39 0.00 0.00 4.75
2175 2405 1.292992 CCGATAACCCGTTAACAGCC 58.707 55.000 6.39 0.00 0.00 4.85
2176 2406 1.292992 CCCGATAACCCGTTAACAGC 58.707 55.000 6.39 0.00 0.00 4.40
2177 2407 2.543641 GACCCGATAACCCGTTAACAG 58.456 52.381 6.39 0.00 0.00 3.16
2178 2408 1.206849 GGACCCGATAACCCGTTAACA 59.793 52.381 6.39 0.00 0.00 2.41
2179 2409 1.206849 TGGACCCGATAACCCGTTAAC 59.793 52.381 0.00 0.00 0.00 2.01
2180 2410 1.566211 TGGACCCGATAACCCGTTAA 58.434 50.000 0.00 0.00 0.00 2.01
2181 2411 1.566211 TTGGACCCGATAACCCGTTA 58.434 50.000 0.00 0.00 0.00 3.18
2182 2412 0.691904 TTTGGACCCGATAACCCGTT 59.308 50.000 0.00 0.00 0.00 4.44
2183 2413 0.691904 TTTTGGACCCGATAACCCGT 59.308 50.000 0.00 0.00 0.00 5.28
2184 2414 1.944709 GATTTTGGACCCGATAACCCG 59.055 52.381 0.00 0.00 0.00 5.28
2185 2415 2.304092 GGATTTTGGACCCGATAACCC 58.696 52.381 0.00 0.00 0.00 4.11
2186 2416 1.944709 CGGATTTTGGACCCGATAACC 59.055 52.381 0.00 0.00 45.58 2.85
2187 2417 2.908916 TCGGATTTTGGACCCGATAAC 58.091 47.619 0.00 0.00 46.17 1.89
2192 2422 3.899395 GGTCGGATTTTGGACCCG 58.101 61.111 0.00 0.00 45.59 5.28
2195 2425 2.872858 GCTATCAGGTCGGATTTTGGAC 59.127 50.000 0.00 0.00 0.00 4.02
2196 2426 2.771943 AGCTATCAGGTCGGATTTTGGA 59.228 45.455 0.00 0.00 0.00 3.53
2197 2427 3.199880 AGCTATCAGGTCGGATTTTGG 57.800 47.619 0.00 0.00 0.00 3.28
2198 2428 5.276868 CGTTAAGCTATCAGGTCGGATTTTG 60.277 44.000 0.00 0.00 0.00 2.44
2199 2429 4.809426 CGTTAAGCTATCAGGTCGGATTTT 59.191 41.667 0.00 0.00 0.00 1.82
2200 2430 4.369182 CGTTAAGCTATCAGGTCGGATTT 58.631 43.478 0.00 0.00 0.00 2.17
2201 2431 3.243771 CCGTTAAGCTATCAGGTCGGATT 60.244 47.826 0.00 0.00 33.98 3.01
2202 2432 2.296471 CCGTTAAGCTATCAGGTCGGAT 59.704 50.000 0.00 0.00 33.98 4.18
2203 2433 1.679680 CCGTTAAGCTATCAGGTCGGA 59.320 52.381 0.00 0.00 33.98 4.55
2204 2434 1.868519 GCCGTTAAGCTATCAGGTCGG 60.869 57.143 0.00 0.00 34.85 4.79
2205 2435 1.488527 GCCGTTAAGCTATCAGGTCG 58.511 55.000 0.00 0.00 0.00 4.79
2206 2436 1.202382 ACGCCGTTAAGCTATCAGGTC 60.202 52.381 0.00 0.00 0.00 3.85
2207 2437 0.822164 ACGCCGTTAAGCTATCAGGT 59.178 50.000 0.00 0.00 0.00 4.00
2208 2438 1.859080 GAACGCCGTTAAGCTATCAGG 59.141 52.381 0.79 0.00 0.00 3.86
2209 2439 1.859080 GGAACGCCGTTAAGCTATCAG 59.141 52.381 0.79 0.00 0.00 2.90
2210 2440 1.930567 GGAACGCCGTTAAGCTATCA 58.069 50.000 0.79 0.00 0.00 2.15
2225 2455 1.021968 GGCATCCACCATAACGGAAC 58.978 55.000 0.00 0.00 38.63 3.62
2226 2456 0.621082 TGGCATCCACCATAACGGAA 59.379 50.000 0.00 0.00 38.63 4.30
2227 2457 2.302019 TGGCATCCACCATAACGGA 58.698 52.632 0.00 0.00 38.63 4.69
2228 2458 4.975132 TGGCATCCACCATAACGG 57.025 55.556 0.00 0.00 42.50 4.44
2237 2467 3.583276 GACCGACACGTGGCATCCA 62.583 63.158 23.63 0.00 0.00 3.41
2238 2468 2.813908 GACCGACACGTGGCATCC 60.814 66.667 23.63 5.09 0.00 3.51
2239 2469 2.048597 TGACCGACACGTGGCATC 60.049 61.111 23.63 18.45 0.00 3.91
2240 2470 2.357034 GTGACCGACACGTGGCAT 60.357 61.111 23.63 8.84 39.78 4.40
2254 2484 0.468226 AGTGCTTTCGTCAAGGGTGA 59.532 50.000 0.00 0.00 32.37 4.02
2255 2485 1.264288 GAAGTGCTTTCGTCAAGGGTG 59.736 52.381 0.00 0.00 32.37 4.61
2256 2486 1.141053 AGAAGTGCTTTCGTCAAGGGT 59.859 47.619 0.00 0.00 40.86 4.34
2257 2487 1.532868 CAGAAGTGCTTTCGTCAAGGG 59.467 52.381 0.00 0.00 40.86 3.95
2258 2488 2.032549 CACAGAAGTGCTTTCGTCAAGG 60.033 50.000 0.00 0.00 40.86 3.61
2259 2489 2.866156 TCACAGAAGTGCTTTCGTCAAG 59.134 45.455 0.00 0.00 45.49 3.02
2260 2490 2.899976 TCACAGAAGTGCTTTCGTCAA 58.100 42.857 0.00 0.00 45.49 3.18
2261 2491 2.595124 TCACAGAAGTGCTTTCGTCA 57.405 45.000 0.00 0.00 45.49 4.35
2262 2492 2.412065 GCATCACAGAAGTGCTTTCGTC 60.412 50.000 0.00 0.00 45.49 4.20
2263 2493 1.532868 GCATCACAGAAGTGCTTTCGT 59.467 47.619 0.00 0.00 45.49 3.85
2264 2494 1.463034 CGCATCACAGAAGTGCTTTCG 60.463 52.381 0.00 0.00 45.49 3.46
2265 2495 1.727213 GCGCATCACAGAAGTGCTTTC 60.727 52.381 0.30 0.00 45.49 2.62
2266 2496 0.239347 GCGCATCACAGAAGTGCTTT 59.761 50.000 0.30 0.00 45.49 3.51
2267 2497 1.871772 GCGCATCACAGAAGTGCTT 59.128 52.632 0.30 0.00 45.49 3.91
2268 2498 2.385875 CGCGCATCACAGAAGTGCT 61.386 57.895 8.75 0.00 45.49 4.40
2269 2499 1.699656 ATCGCGCATCACAGAAGTGC 61.700 55.000 8.75 0.00 45.49 4.40
2270 2500 7.980671 CGATAAATCGCGCATCACAGAAGTG 62.981 48.000 8.75 0.00 44.22 3.16
2271 2501 1.442769 AAATCGCGCATCACAGAAGT 58.557 45.000 8.75 0.00 0.00 3.01
2272 2502 3.660132 CGATAAATCGCGCATCACAGAAG 60.660 47.826 8.75 0.00 43.84 2.85
2273 2503 2.218530 CGATAAATCGCGCATCACAGAA 59.781 45.455 8.75 0.00 43.84 3.02
2274 2504 1.786579 CGATAAATCGCGCATCACAGA 59.213 47.619 8.75 0.00 43.84 3.41
2275 2505 2.202649 CGATAAATCGCGCATCACAG 57.797 50.000 8.75 0.00 43.84 3.66
2286 2516 4.332543 TGTGCACTTCCATGACGATAAATC 59.667 41.667 19.41 0.00 0.00 2.17
2287 2517 4.094887 GTGTGCACTTCCATGACGATAAAT 59.905 41.667 19.41 0.00 0.00 1.40
2288 2518 3.435327 GTGTGCACTTCCATGACGATAAA 59.565 43.478 19.41 0.00 0.00 1.40
2289 2519 3.000041 GTGTGCACTTCCATGACGATAA 59.000 45.455 19.41 0.00 0.00 1.75
2290 2520 2.233676 AGTGTGCACTTCCATGACGATA 59.766 45.455 19.41 0.00 38.83 2.92
2291 2521 1.002430 AGTGTGCACTTCCATGACGAT 59.998 47.619 19.41 0.00 38.83 3.73
2292 2522 0.392706 AGTGTGCACTTCCATGACGA 59.607 50.000 19.41 0.00 38.83 4.20
2293 2523 2.918571 AGTGTGCACTTCCATGACG 58.081 52.632 19.41 0.00 38.83 4.35
2310 2540 5.247507 TGCCAAAATTATCATCACGGAAG 57.752 39.130 0.00 0.00 0.00 3.46
2311 2541 5.651387 TTGCCAAAATTATCATCACGGAA 57.349 34.783 0.00 0.00 0.00 4.30
2312 2542 5.126869 ACATTGCCAAAATTATCATCACGGA 59.873 36.000 0.00 0.00 0.00 4.69
2313 2543 5.350633 ACATTGCCAAAATTATCATCACGG 58.649 37.500 0.00 0.00 0.00 4.94
2314 2544 6.035217 TGACATTGCCAAAATTATCATCACG 58.965 36.000 0.00 0.00 0.00 4.35
2315 2545 7.042321 CCATGACATTGCCAAAATTATCATCAC 60.042 37.037 0.00 0.00 0.00 3.06
2316 2546 6.987404 CCATGACATTGCCAAAATTATCATCA 59.013 34.615 0.00 0.00 0.00 3.07
2317 2547 7.211573 TCCATGACATTGCCAAAATTATCATC 58.788 34.615 0.00 0.00 0.00 2.92
2318 2548 7.127012 TCCATGACATTGCCAAAATTATCAT 57.873 32.000 0.00 0.00 0.00 2.45
2319 2549 6.541934 TCCATGACATTGCCAAAATTATCA 57.458 33.333 0.00 0.00 0.00 2.15
2320 2550 6.817641 TGTTCCATGACATTGCCAAAATTATC 59.182 34.615 0.00 0.00 0.00 1.75
2321 2551 6.594937 GTGTTCCATGACATTGCCAAAATTAT 59.405 34.615 0.00 0.00 0.00 1.28
2322 2552 5.931146 GTGTTCCATGACATTGCCAAAATTA 59.069 36.000 0.00 0.00 0.00 1.40
2323 2553 4.756135 GTGTTCCATGACATTGCCAAAATT 59.244 37.500 0.00 0.00 0.00 1.82
2324 2554 4.040706 AGTGTTCCATGACATTGCCAAAAT 59.959 37.500 0.00 0.00 0.00 1.82
2325 2555 3.387374 AGTGTTCCATGACATTGCCAAAA 59.613 39.130 0.00 0.00 0.00 2.44
2326 2556 2.964464 AGTGTTCCATGACATTGCCAAA 59.036 40.909 0.00 0.00 0.00 3.28
2327 2557 2.596346 AGTGTTCCATGACATTGCCAA 58.404 42.857 0.00 0.00 0.00 4.52
2328 2558 2.291209 AGTGTTCCATGACATTGCCA 57.709 45.000 0.00 0.00 0.00 4.92
2329 2559 2.821969 AGAAGTGTTCCATGACATTGCC 59.178 45.455 0.00 0.00 0.00 4.52
2330 2560 5.355071 TCATAGAAGTGTTCCATGACATTGC 59.645 40.000 0.00 0.00 33.80 3.56
2331 2561 6.990341 TCATAGAAGTGTTCCATGACATTG 57.010 37.500 0.00 0.00 33.80 2.82
2336 2566 3.678806 GCCGTCATAGAAGTGTTCCATGA 60.679 47.826 0.00 0.00 35.84 3.07
2337 2567 2.609459 GCCGTCATAGAAGTGTTCCATG 59.391 50.000 0.00 0.00 31.26 3.66
2338 2568 2.236146 TGCCGTCATAGAAGTGTTCCAT 59.764 45.455 0.00 0.00 0.00 3.41
2339 2569 1.621317 TGCCGTCATAGAAGTGTTCCA 59.379 47.619 0.00 0.00 0.00 3.53
2340 2570 2.000447 GTGCCGTCATAGAAGTGTTCC 59.000 52.381 0.00 0.00 0.00 3.62
2341 2571 2.668457 CTGTGCCGTCATAGAAGTGTTC 59.332 50.000 0.00 0.00 33.81 3.18
2342 2572 2.612972 CCTGTGCCGTCATAGAAGTGTT 60.613 50.000 0.00 0.00 33.81 3.32
2343 2573 1.066858 CCTGTGCCGTCATAGAAGTGT 60.067 52.381 0.00 0.00 33.81 3.55
2344 2574 1.066858 ACCTGTGCCGTCATAGAAGTG 60.067 52.381 0.00 0.00 33.81 3.16
2345 2575 1.267121 ACCTGTGCCGTCATAGAAGT 58.733 50.000 0.00 0.00 33.81 3.01
2346 2576 3.068165 TCATACCTGTGCCGTCATAGAAG 59.932 47.826 0.00 0.00 33.81 2.85
2347 2577 3.028130 TCATACCTGTGCCGTCATAGAA 58.972 45.455 0.00 0.00 33.81 2.10
2348 2578 2.361119 GTCATACCTGTGCCGTCATAGA 59.639 50.000 0.00 0.00 33.81 1.98
2349 2579 2.362397 AGTCATACCTGTGCCGTCATAG 59.638 50.000 0.00 0.00 0.00 2.23
2350 2580 2.384828 AGTCATACCTGTGCCGTCATA 58.615 47.619 0.00 0.00 0.00 2.15
2351 2581 1.195115 AGTCATACCTGTGCCGTCAT 58.805 50.000 0.00 0.00 0.00 3.06
2352 2582 1.842052 TAGTCATACCTGTGCCGTCA 58.158 50.000 0.00 0.00 0.00 4.35
2353 2583 2.623889 AGATAGTCATACCTGTGCCGTC 59.376 50.000 0.00 0.00 0.00 4.79
2354 2584 2.667470 AGATAGTCATACCTGTGCCGT 58.333 47.619 0.00 0.00 0.00 5.68
2355 2585 3.068165 TCAAGATAGTCATACCTGTGCCG 59.932 47.826 0.00 0.00 0.00 5.69
2356 2586 4.672587 TCAAGATAGTCATACCTGTGCC 57.327 45.455 0.00 0.00 0.00 5.01
2357 2587 6.423302 CAGAATCAAGATAGTCATACCTGTGC 59.577 42.308 0.00 0.00 0.00 4.57
2358 2588 7.495901 ACAGAATCAAGATAGTCATACCTGTG 58.504 38.462 0.00 0.00 0.00 3.66
2359 2589 7.343057 TGACAGAATCAAGATAGTCATACCTGT 59.657 37.037 0.00 0.00 33.02 4.00
2360 2590 7.720442 TGACAGAATCAAGATAGTCATACCTG 58.280 38.462 8.09 0.00 33.02 4.00
2361 2591 7.904558 TGACAGAATCAAGATAGTCATACCT 57.095 36.000 8.09 0.00 33.02 3.08
2373 2603 9.297586 CCATGACAAATTTATGACAGAATCAAG 57.702 33.333 0.00 0.00 41.93 3.02
2374 2604 9.022884 TCCATGACAAATTTATGACAGAATCAA 57.977 29.630 0.00 0.00 41.93 2.57
2375 2605 8.578448 TCCATGACAAATTTATGACAGAATCA 57.422 30.769 0.00 0.00 43.13 2.57
2376 2606 9.459640 CATCCATGACAAATTTATGACAGAATC 57.540 33.333 0.00 0.00 0.00 2.52
2377 2607 8.974238 ACATCCATGACAAATTTATGACAGAAT 58.026 29.630 0.00 0.00 0.00 2.40
2378 2608 8.352137 ACATCCATGACAAATTTATGACAGAA 57.648 30.769 0.00 0.00 0.00 3.02
2379 2609 7.943079 ACATCCATGACAAATTTATGACAGA 57.057 32.000 0.00 0.00 0.00 3.41
2380 2610 8.676401 TGTACATCCATGACAAATTTATGACAG 58.324 33.333 0.00 0.00 0.00 3.51
2381 2611 8.572855 TGTACATCCATGACAAATTTATGACA 57.427 30.769 0.00 0.00 0.00 3.58
2382 2612 9.454585 CATGTACATCCATGACAAATTTATGAC 57.545 33.333 5.07 0.00 43.99 3.06
2383 2613 8.136800 GCATGTACATCCATGACAAATTTATGA 58.863 33.333 5.07 0.00 43.99 2.15
2384 2614 7.921745 TGCATGTACATCCATGACAAATTTATG 59.078 33.333 5.07 0.00 43.99 1.90
2385 2615 8.009622 TGCATGTACATCCATGACAAATTTAT 57.990 30.769 5.07 0.00 43.99 1.40
2386 2616 7.401955 TGCATGTACATCCATGACAAATTTA 57.598 32.000 5.07 0.00 43.99 1.40
2387 2617 6.283544 TGCATGTACATCCATGACAAATTT 57.716 33.333 5.07 0.00 43.99 1.82
2388 2618 5.918426 TGCATGTACATCCATGACAAATT 57.082 34.783 5.07 0.00 43.99 1.82
2389 2619 5.595133 TCATGCATGTACATCCATGACAAAT 59.405 36.000 30.25 0.02 43.99 2.32
2390 2620 4.948621 TCATGCATGTACATCCATGACAAA 59.051 37.500 30.25 14.49 43.99 2.83
2391 2621 4.525024 TCATGCATGTACATCCATGACAA 58.475 39.130 30.25 14.80 43.99 3.18
2392 2622 4.153673 TCATGCATGTACATCCATGACA 57.846 40.909 30.25 15.42 43.99 3.58
2394 2624 4.153673 TGTCATGCATGTACATCCATGA 57.846 40.909 30.25 30.25 43.99 3.07
2395 2625 4.904253 TTGTCATGCATGTACATCCATG 57.096 40.909 27.23 27.23 44.07 3.66
2396 2626 5.918426 TTTTGTCATGCATGTACATCCAT 57.082 34.783 25.43 6.44 0.00 3.41
2397 2627 5.718724 TTTTTGTCATGCATGTACATCCA 57.281 34.783 25.43 2.99 0.00 3.41
2416 2646 1.862827 GTCACAGTAGGTCGCGTTTTT 59.137 47.619 5.77 0.00 0.00 1.94
2417 2647 1.202440 TGTCACAGTAGGTCGCGTTTT 60.202 47.619 5.77 0.00 0.00 2.43
2418 2648 0.386476 TGTCACAGTAGGTCGCGTTT 59.614 50.000 5.77 0.00 0.00 3.60
2419 2649 0.386476 TTGTCACAGTAGGTCGCGTT 59.614 50.000 5.77 0.00 0.00 4.84
2420 2650 0.386476 TTTGTCACAGTAGGTCGCGT 59.614 50.000 5.77 0.00 0.00 6.01
2421 2651 0.782384 GTTTGTCACAGTAGGTCGCG 59.218 55.000 0.00 0.00 0.00 5.87
2422 2652 1.525619 GTGTTTGTCACAGTAGGTCGC 59.474 52.381 0.00 0.00 45.51 5.19
2423 2653 1.784856 CGTGTTTGTCACAGTAGGTCG 59.215 52.381 0.00 0.00 46.44 4.79
2424 2654 2.817901 ACGTGTTTGTCACAGTAGGTC 58.182 47.619 0.00 0.00 46.44 3.85
2425 2655 2.973694 ACGTGTTTGTCACAGTAGGT 57.026 45.000 0.00 0.00 46.44 3.08
2426 2656 4.552355 TGATACGTGTTTGTCACAGTAGG 58.448 43.478 0.00 0.00 46.44 3.18
2427 2657 5.861787 TGATGATACGTGTTTGTCACAGTAG 59.138 40.000 0.00 0.00 46.44 2.57
2428 2658 5.631929 GTGATGATACGTGTTTGTCACAGTA 59.368 40.000 15.50 0.00 46.44 2.74
2429 2659 4.447724 GTGATGATACGTGTTTGTCACAGT 59.552 41.667 15.50 0.00 46.44 3.55
2430 2660 4.432892 CGTGATGATACGTGTTTGTCACAG 60.433 45.833 18.33 11.29 46.44 3.66
2431 2661 3.427193 CGTGATGATACGTGTTTGTCACA 59.573 43.478 18.33 0.60 46.44 3.58
2432 2662 3.181534 CCGTGATGATACGTGTTTGTCAC 60.182 47.826 0.00 6.93 42.24 3.67
2433 2663 2.990514 CCGTGATGATACGTGTTTGTCA 59.009 45.455 0.00 0.00 42.24 3.58
2434 2664 3.247442 TCCGTGATGATACGTGTTTGTC 58.753 45.455 0.00 0.00 42.24 3.18
2435 2665 3.306917 TCCGTGATGATACGTGTTTGT 57.693 42.857 0.00 0.00 42.24 2.83
2436 2666 3.678072 ACTTCCGTGATGATACGTGTTTG 59.322 43.478 0.00 0.00 42.24 2.93
2437 2667 3.678072 CACTTCCGTGATGATACGTGTTT 59.322 43.478 0.00 0.00 43.97 2.83
2438 2668 3.250744 CACTTCCGTGATGATACGTGTT 58.749 45.455 0.00 0.00 43.97 3.32
2439 2669 2.230508 ACACTTCCGTGATGATACGTGT 59.769 45.455 0.00 0.00 43.97 4.49
2440 2670 2.876091 ACACTTCCGTGATGATACGTG 58.124 47.619 0.00 0.00 43.97 4.49
2441 2671 4.913335 ATACACTTCCGTGATGATACGT 57.087 40.909 0.00 0.00 43.97 3.57
2442 2672 6.583912 AAAATACACTTCCGTGATGATACG 57.416 37.500 0.00 0.00 43.97 3.06
2465 2695 1.202710 TCGTGGCCAGCACTAGAAAAA 60.203 47.619 5.11 0.00 0.00 1.94
2466 2696 0.394938 TCGTGGCCAGCACTAGAAAA 59.605 50.000 5.11 0.00 0.00 2.29
2467 2697 0.037326 CTCGTGGCCAGCACTAGAAA 60.037 55.000 5.11 0.00 0.00 2.52
2468 2698 1.591703 CTCGTGGCCAGCACTAGAA 59.408 57.895 5.11 0.00 0.00 2.10
2469 2699 2.351244 CCTCGTGGCCAGCACTAGA 61.351 63.158 5.11 0.00 0.00 2.43
2470 2700 2.185350 CCTCGTGGCCAGCACTAG 59.815 66.667 5.11 0.00 0.00 2.57
2471 2701 3.390521 CCCTCGTGGCCAGCACTA 61.391 66.667 5.11 0.00 0.00 2.74
2527 2757 4.802051 CACCATGGGCCCACGAGG 62.802 72.222 31.51 30.11 39.47 4.63
2528 2758 4.802051 CCACCATGGGCCCACGAG 62.802 72.222 31.51 21.41 32.67 4.18
2543 2773 0.629058 GAAATAAGTGGAGGGGGCCA 59.371 55.000 4.39 0.00 35.02 5.36
2544 2774 0.927029 AGAAATAAGTGGAGGGGGCC 59.073 55.000 0.00 0.00 0.00 5.80
2545 2775 2.024306 GCAGAAATAAGTGGAGGGGGC 61.024 57.143 0.00 0.00 0.00 5.80
2546 2776 1.284785 TGCAGAAATAAGTGGAGGGGG 59.715 52.381 0.00 0.00 0.00 5.40
2547 2777 2.369394 GTGCAGAAATAAGTGGAGGGG 58.631 52.381 0.00 0.00 0.00 4.79
2548 2778 2.369394 GGTGCAGAAATAAGTGGAGGG 58.631 52.381 0.00 0.00 0.00 4.30
2549 2779 2.025887 AGGGTGCAGAAATAAGTGGAGG 60.026 50.000 0.00 0.00 0.00 4.30
2550 2780 3.054802 AGAGGGTGCAGAAATAAGTGGAG 60.055 47.826 0.00 0.00 0.00 3.86
2551 2781 2.912956 AGAGGGTGCAGAAATAAGTGGA 59.087 45.455 0.00 0.00 0.00 4.02
2552 2782 3.274288 GAGAGGGTGCAGAAATAAGTGG 58.726 50.000 0.00 0.00 0.00 4.00
2553 2783 3.686726 GTGAGAGGGTGCAGAAATAAGTG 59.313 47.826 0.00 0.00 0.00 3.16
2554 2784 3.584848 AGTGAGAGGGTGCAGAAATAAGT 59.415 43.478 0.00 0.00 0.00 2.24
2555 2785 4.213564 AGTGAGAGGGTGCAGAAATAAG 57.786 45.455 0.00 0.00 0.00 1.73
2556 2786 4.287067 AGAAGTGAGAGGGTGCAGAAATAA 59.713 41.667 0.00 0.00 0.00 1.40
2557 2787 3.840666 AGAAGTGAGAGGGTGCAGAAATA 59.159 43.478 0.00 0.00 0.00 1.40
2558 2788 2.641815 AGAAGTGAGAGGGTGCAGAAAT 59.358 45.455 0.00 0.00 0.00 2.17
2559 2789 2.050144 AGAAGTGAGAGGGTGCAGAAA 58.950 47.619 0.00 0.00 0.00 2.52
2560 2790 1.722034 AGAAGTGAGAGGGTGCAGAA 58.278 50.000 0.00 0.00 0.00 3.02
2561 2791 1.620819 GAAGAAGTGAGAGGGTGCAGA 59.379 52.381 0.00 0.00 0.00 4.26
2562 2792 1.622811 AGAAGAAGTGAGAGGGTGCAG 59.377 52.381 0.00 0.00 0.00 4.41
2563 2793 1.722034 AGAAGAAGTGAGAGGGTGCA 58.278 50.000 0.00 0.00 0.00 4.57
2564 2794 2.849294 AAGAAGAAGTGAGAGGGTGC 57.151 50.000 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.