Multiple sequence alignment - TraesCS4D01G287000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G287000 chr4D 100.000 7071 0 0 1 7071 459053461 459060531 0.000000e+00 13058
1 TraesCS4D01G287000 chr4D 98.071 311 6 0 1 311 459040748 459041058 6.240000e-150 542
2 TraesCS4D01G287000 chr4D 89.389 311 29 4 2 310 477178935 477179243 8.600000e-104 388
3 TraesCS4D01G287000 chr4D 89.137 313 29 5 2 311 329849569 329849259 1.110000e-102 385
4 TraesCS4D01G287000 chr4D 88.162 321 24 7 4159 4478 19876233 19876540 3.120000e-98 370
5 TraesCS4D01G287000 chr4B 96.240 5745 157 26 312 6023 573289201 573294919 0.000000e+00 9358
6 TraesCS4D01G287000 chr4B 91.956 721 32 11 6366 7071 573295869 573296578 0.000000e+00 987
7 TraesCS4D01G287000 chr4B 88.235 340 21 9 6041 6376 573295528 573295852 8.600000e-104 388
8 TraesCS4D01G287000 chr4A 97.740 2611 59 0 1206 3816 9913575 9910965 0.000000e+00 4495
9 TraesCS4D01G287000 chr4A 90.203 2021 118 29 3920 5891 9910939 9908950 0.000000e+00 2562
10 TraesCS4D01G287000 chr4A 94.010 601 23 2 6471 7071 9908358 9907771 0.000000e+00 898
11 TraesCS4D01G287000 chr4A 88.909 559 42 13 315 856 9914726 9914171 0.000000e+00 671
12 TraesCS4D01G287000 chr4A 86.882 526 36 16 5958 6470 9908916 9908411 6.200000e-155 558
13 TraesCS4D01G287000 chr4A 94.931 217 11 0 879 1095 9914100 9913884 2.440000e-89 340
14 TraesCS4D01G287000 chr7D 90.032 311 29 2 2 311 543012814 543013123 1.100000e-107 401
15 TraesCS4D01G287000 chr7D 90.032 311 29 2 2 311 543025554 543025863 1.100000e-107 401
16 TraesCS4D01G287000 chr7B 89.441 322 22 7 4159 4478 622425633 622425944 5.140000e-106 396
17 TraesCS4D01G287000 chr6D 89.423 312 29 4 2 312 363665197 363665505 2.390000e-104 390
18 TraesCS4D01G287000 chr2D 89.423 312 30 3 2 311 559608861 559608551 2.390000e-104 390
19 TraesCS4D01G287000 chr2D 89.389 311 30 3 2 311 467465462 467465154 8.600000e-104 388
20 TraesCS4D01G287000 chr2D 89.137 313 30 4 2 311 155700085 155699774 3.090000e-103 387
21 TraesCS4D01G287000 chr5D 87.937 315 24 8 4165 4478 6169159 6168858 6.740000e-95 359
22 TraesCS4D01G287000 chr5D 87.421 318 26 8 4162 4478 329160196 329159892 3.140000e-93 353
23 TraesCS4D01G287000 chr5D 87.227 321 27 7 4159 4478 503299683 503299990 3.140000e-93 353
24 TraesCS4D01G287000 chr5D 87.107 318 26 9 4162 4478 6268197 6267894 5.250000e-91 346
25 TraesCS4D01G287000 chr1D 86.709 316 28 8 4162 4476 51864289 51863987 8.790000e-89 339


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G287000 chr4D 459053461 459060531 7070 False 13058.000000 13058 100.000000 1 7071 1 chr4D.!!$F3 7070
1 TraesCS4D01G287000 chr4B 573289201 573296578 7377 False 3577.666667 9358 92.143667 312 7071 3 chr4B.!!$F1 6759
2 TraesCS4D01G287000 chr4A 9907771 9914726 6955 True 1587.333333 4495 92.112500 315 7071 6 chr4A.!!$R1 6756

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.036294 GGGAAGGTTCTTGAGGTCGG 60.036 60.000 0.00 0.0 0.00 4.79 F
304 305 0.107361 GCTACCCGTGGCCATTTACT 60.107 55.000 9.72 0.0 0.00 2.24 F
310 311 0.390603 CGTGGCCATTTACTCCGACA 60.391 55.000 9.72 0.0 0.00 4.35 F
1846 2120 0.402121 AAGCAAGAGACCCACCTTCC 59.598 55.000 0.00 0.0 0.00 3.46 F
3469 3743 1.913317 TCAGTGCATTCTCGTCATCG 58.087 50.000 0.00 0.0 38.55 3.84 F
4084 4358 3.236047 TGTAAGTCTTCCCTACACTGCA 58.764 45.455 0.00 0.0 0.00 4.41 F
5696 6012 1.166531 GGTCGGTGCAAAGAAGTGCT 61.167 55.000 0.00 0.0 45.17 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1762 2036 0.176680 CATCCTCCTCGTCCACAAGG 59.823 60.000 0.0 0.0 0.00 3.61 R
1846 2120 0.458669 GCTCCAGTTCATGCCCATTG 59.541 55.000 0.0 0.0 0.00 2.82 R
1954 2228 1.293062 AGCCATCCACCATGTCTTCT 58.707 50.000 0.0 0.0 0.00 2.85 R
3586 3860 1.270550 CAATGGCACTTCCCAAGACAC 59.729 52.381 0.0 0.0 38.61 3.67 R
4425 4701 1.199327 CTGAATGTTGCTGCCTGTGAG 59.801 52.381 0.0 0.0 0.00 3.51 R
5976 6304 0.317269 CAAACCACAGCAGCTTCACG 60.317 55.000 0.0 0.0 0.00 4.35 R
6703 7721 0.620410 CTGGGATGGGTCTGGGTACA 60.620 60.000 0.0 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.250234 TCCTTGAGGGTGCAATCTCG 59.750 55.000 11.43 1.11 36.25 4.04
20 21 0.745845 CCTTGAGGGTGCAATCTCGG 60.746 60.000 11.43 5.49 33.00 4.63
21 22 1.372087 CTTGAGGGTGCAATCTCGGC 61.372 60.000 11.43 0.00 33.00 5.54
22 23 2.514824 GAGGGTGCAATCTCGGCC 60.515 66.667 0.00 0.00 0.00 6.13
23 24 4.473520 AGGGTGCAATCTCGGCCG 62.474 66.667 22.12 22.12 0.00 6.13
26 27 3.127533 GTGCAATCTCGGCCGCTT 61.128 61.111 23.51 11.11 0.00 4.68
27 28 3.126879 TGCAATCTCGGCCGCTTG 61.127 61.111 23.51 22.96 0.00 4.01
28 29 4.543084 GCAATCTCGGCCGCTTGC 62.543 66.667 30.28 30.28 37.44 4.01
29 30 2.821366 CAATCTCGGCCGCTTGCT 60.821 61.111 23.51 1.27 40.92 3.91
31 32 4.845580 ATCTCGGCCGCTTGCTGG 62.846 66.667 23.51 4.16 46.96 4.85
41 42 4.785453 CTTGCTGGGAGCCGGTCC 62.785 72.222 8.20 8.20 46.10 4.46
45 46 3.151022 CTGGGAGCCGGTCCTCTC 61.151 72.222 16.12 11.55 46.06 3.20
48 49 3.827898 GGAGCCGGTCCTCTCGTG 61.828 72.222 9.50 0.00 42.99 4.35
49 50 3.827898 GAGCCGGTCCTCTCGTGG 61.828 72.222 1.90 0.00 0.00 4.94
57 58 4.899239 CCTCTCGTGGCCGGCATC 62.899 72.222 30.85 19.01 33.95 3.91
67 68 4.873129 CCGGCATCGTGGAGTCGG 62.873 72.222 0.00 0.00 33.95 4.79
68 69 4.129737 CGGCATCGTGGAGTCGGT 62.130 66.667 0.00 0.00 0.00 4.69
69 70 2.202756 GGCATCGTGGAGTCGGTC 60.203 66.667 0.00 0.00 0.00 4.79
70 71 2.711922 GGCATCGTGGAGTCGGTCT 61.712 63.158 0.00 0.00 0.00 3.85
71 72 1.215647 GCATCGTGGAGTCGGTCTT 59.784 57.895 0.00 0.00 0.00 3.01
72 73 0.802607 GCATCGTGGAGTCGGTCTTC 60.803 60.000 0.00 0.00 0.00 2.87
73 74 0.811915 CATCGTGGAGTCGGTCTTCT 59.188 55.000 0.00 0.00 0.00 2.85
74 75 1.202582 CATCGTGGAGTCGGTCTTCTT 59.797 52.381 0.00 0.00 0.00 2.52
75 76 0.596577 TCGTGGAGTCGGTCTTCTTG 59.403 55.000 0.00 0.00 0.00 3.02
76 77 1.009389 CGTGGAGTCGGTCTTCTTGC 61.009 60.000 0.00 0.00 0.00 4.01
77 78 1.009389 GTGGAGTCGGTCTTCTTGCG 61.009 60.000 0.00 0.00 0.00 4.85
78 79 1.446272 GGAGTCGGTCTTCTTGCGG 60.446 63.158 0.00 0.00 0.00 5.69
79 80 2.048127 AGTCGGTCTTCTTGCGGC 60.048 61.111 0.00 0.00 0.00 6.53
80 81 3.119096 GTCGGTCTTCTTGCGGCC 61.119 66.667 0.00 0.00 0.00 6.13
81 82 4.735132 TCGGTCTTCTTGCGGCCG 62.735 66.667 24.05 24.05 43.32 6.13
85 86 4.329545 TCTTCTTGCGGCCGGCTT 62.330 61.111 29.38 0.00 44.05 4.35
86 87 3.804193 CTTCTTGCGGCCGGCTTC 61.804 66.667 29.38 18.50 44.05 3.86
87 88 4.329545 TTCTTGCGGCCGGCTTCT 62.330 61.111 29.38 0.00 44.05 2.85
94 95 4.475135 GGCCGGCTTCTGGGAGTC 62.475 72.222 28.56 0.41 0.00 3.36
95 96 4.821589 GCCGGCTTCTGGGAGTCG 62.822 72.222 22.15 0.00 43.96 4.18
97 98 3.382832 CGGCTTCTGGGAGTCGGT 61.383 66.667 0.00 0.00 40.85 4.69
98 99 2.579738 GGCTTCTGGGAGTCGGTC 59.420 66.667 0.00 0.00 0.00 4.79
99 100 1.985116 GGCTTCTGGGAGTCGGTCT 60.985 63.158 0.00 0.00 0.00 3.85
100 101 1.513622 GCTTCTGGGAGTCGGTCTC 59.486 63.158 0.00 0.00 42.07 3.36
107 108 3.300013 GAGTCGGTCTCCTTGGGG 58.700 66.667 0.00 0.00 37.22 4.96
108 109 3.003763 AGTCGGTCTCCTTGGGGC 61.004 66.667 0.00 0.00 0.00 5.80
109 110 4.097361 GTCGGTCTCCTTGGGGCC 62.097 72.222 0.00 0.00 0.00 5.80
115 116 4.803908 CTCCTTGGGGCCGGCTTC 62.804 72.222 28.56 18.91 0.00 3.86
123 124 4.475135 GGCCGGCTTCCTGGAGTC 62.475 72.222 28.56 0.41 0.00 3.36
124 125 4.821589 GCCGGCTTCCTGGAGTCG 62.822 72.222 22.15 11.51 43.96 4.18
126 127 4.821589 CGGCTTCCTGGAGTCGGC 62.822 72.222 10.86 8.58 40.85 5.54
127 128 4.475135 GGCTTCCTGGAGTCGGCC 62.475 72.222 13.35 13.35 0.00 6.13
128 129 3.706373 GCTTCCTGGAGTCGGCCA 61.706 66.667 2.24 0.00 36.30 5.36
129 130 3.036429 GCTTCCTGGAGTCGGCCAT 62.036 63.158 2.24 0.00 37.30 4.40
130 131 1.144936 CTTCCTGGAGTCGGCCATC 59.855 63.158 2.24 0.00 37.30 3.51
131 132 1.306141 TTCCTGGAGTCGGCCATCT 60.306 57.895 2.24 0.00 37.30 2.90
132 133 0.909610 TTCCTGGAGTCGGCCATCTT 60.910 55.000 2.24 0.00 37.30 2.40
133 134 1.153289 CCTGGAGTCGGCCATCTTG 60.153 63.158 2.24 0.00 37.30 3.02
134 135 1.599047 CTGGAGTCGGCCATCTTGT 59.401 57.895 2.24 0.00 37.30 3.16
135 136 0.742281 CTGGAGTCGGCCATCTTGTG 60.742 60.000 2.24 0.00 37.30 3.33
147 148 3.206150 CCATCTTGTGGTTATCTTCGGG 58.794 50.000 0.00 0.00 43.44 5.14
148 149 3.118408 CCATCTTGTGGTTATCTTCGGGA 60.118 47.826 0.00 0.00 43.44 5.14
149 150 4.513442 CATCTTGTGGTTATCTTCGGGAA 58.487 43.478 0.00 0.00 0.00 3.97
150 151 4.202245 TCTTGTGGTTATCTTCGGGAAG 57.798 45.455 1.97 1.97 39.71 3.46
151 152 3.055385 TCTTGTGGTTATCTTCGGGAAGG 60.055 47.826 8.46 0.00 38.88 3.46
152 153 2.262637 TGTGGTTATCTTCGGGAAGGT 58.737 47.619 8.46 4.07 38.88 3.50
153 154 2.640826 TGTGGTTATCTTCGGGAAGGTT 59.359 45.455 8.46 0.40 38.88 3.50
154 155 3.268330 GTGGTTATCTTCGGGAAGGTTC 58.732 50.000 8.46 0.00 38.88 3.62
155 156 3.055312 GTGGTTATCTTCGGGAAGGTTCT 60.055 47.826 8.46 0.00 38.88 3.01
156 157 3.585732 TGGTTATCTTCGGGAAGGTTCTT 59.414 43.478 8.46 0.00 38.88 2.52
157 158 3.939592 GGTTATCTTCGGGAAGGTTCTTG 59.060 47.826 8.46 0.00 38.88 3.02
158 159 4.323257 GGTTATCTTCGGGAAGGTTCTTGA 60.323 45.833 8.46 0.00 38.88 3.02
159 160 3.618690 ATCTTCGGGAAGGTTCTTGAG 57.381 47.619 8.46 0.00 38.88 3.02
160 161 1.623811 TCTTCGGGAAGGTTCTTGAGG 59.376 52.381 8.46 0.00 38.88 3.86
161 162 1.348036 CTTCGGGAAGGTTCTTGAGGT 59.652 52.381 0.38 0.00 34.87 3.85
162 163 0.974383 TCGGGAAGGTTCTTGAGGTC 59.026 55.000 0.00 0.00 0.00 3.85
163 164 0.389948 CGGGAAGGTTCTTGAGGTCG 60.390 60.000 0.00 0.00 0.00 4.79
164 165 0.036294 GGGAAGGTTCTTGAGGTCGG 60.036 60.000 0.00 0.00 0.00 4.79
165 166 0.036294 GGAAGGTTCTTGAGGTCGGG 60.036 60.000 0.00 0.00 0.00 5.14
166 167 0.685660 GAAGGTTCTTGAGGTCGGGT 59.314 55.000 0.00 0.00 0.00 5.28
167 168 0.685660 AAGGTTCTTGAGGTCGGGTC 59.314 55.000 0.00 0.00 0.00 4.46
168 169 1.080025 GGTTCTTGAGGTCGGGTCG 60.080 63.158 0.00 0.00 0.00 4.79
169 170 1.737008 GTTCTTGAGGTCGGGTCGC 60.737 63.158 0.00 0.00 0.00 5.19
170 171 2.939261 TTCTTGAGGTCGGGTCGCC 61.939 63.158 0.00 0.00 0.00 5.54
171 172 3.382832 CTTGAGGTCGGGTCGCCT 61.383 66.667 3.71 3.71 36.46 5.52
172 173 2.920912 TTGAGGTCGGGTCGCCTT 60.921 61.111 5.19 0.00 34.66 4.35
173 174 2.837371 CTTGAGGTCGGGTCGCCTTC 62.837 65.000 5.19 0.00 34.66 3.46
174 175 4.144703 GAGGTCGGGTCGCCTTCC 62.145 72.222 5.19 0.00 34.66 3.46
178 179 4.738998 TCGGGTCGCCTTCCGGTA 62.739 66.667 0.00 0.00 45.69 4.02
179 180 4.203076 CGGGTCGCCTTCCGGTAG 62.203 72.222 0.00 0.00 42.32 3.18
180 181 3.073101 GGGTCGCCTTCCGGTAGT 61.073 66.667 7.37 0.00 37.59 2.73
181 182 2.493501 GGTCGCCTTCCGGTAGTC 59.506 66.667 7.37 0.00 37.59 2.59
182 183 2.101770 GTCGCCTTCCGGTAGTCG 59.898 66.667 5.06 5.06 37.59 4.18
192 193 3.016997 CGGTAGTCGGCCTATGAGA 57.983 57.895 0.00 0.00 34.75 3.27
193 194 0.592148 CGGTAGTCGGCCTATGAGAC 59.408 60.000 0.00 0.00 34.75 3.36
194 195 1.688772 GGTAGTCGGCCTATGAGACA 58.311 55.000 0.00 0.00 37.36 3.41
195 196 1.609555 GGTAGTCGGCCTATGAGACAG 59.390 57.143 0.00 0.00 37.36 3.51
196 197 1.001158 GTAGTCGGCCTATGAGACAGC 60.001 57.143 0.00 0.00 37.36 4.40
197 198 1.068250 GTCGGCCTATGAGACAGCC 59.932 63.158 0.00 0.00 42.18 4.85
199 200 2.423446 GGCCTATGAGACAGCCGG 59.577 66.667 0.00 0.00 35.30 6.13
200 201 2.280457 GCCTATGAGACAGCCGGC 60.280 66.667 21.89 21.89 0.00 6.13
201 202 2.423446 CCTATGAGACAGCCGGCC 59.577 66.667 26.15 8.19 0.00 6.13
202 203 2.434843 CCTATGAGACAGCCGGCCA 61.435 63.158 26.15 14.55 0.00 5.36
203 204 1.068753 CTATGAGACAGCCGGCCAG 59.931 63.158 26.15 19.53 0.00 4.85
204 205 2.374830 CTATGAGACAGCCGGCCAGG 62.375 65.000 26.15 16.25 44.97 4.45
208 209 4.344865 GACAGCCGGCCAGGGAAA 62.345 66.667 26.15 0.00 41.48 3.13
209 210 4.351054 ACAGCCGGCCAGGGAAAG 62.351 66.667 26.15 5.50 41.48 2.62
221 222 4.660938 GGAAAGGCGGCCCTGTGT 62.661 66.667 17.02 0.00 41.90 3.72
222 223 3.365265 GAAAGGCGGCCCTGTGTG 61.365 66.667 17.02 0.00 41.90 3.82
223 224 4.204028 AAAGGCGGCCCTGTGTGT 62.204 61.111 17.02 0.00 41.90 3.72
224 225 3.731766 AAAGGCGGCCCTGTGTGTT 62.732 57.895 17.02 0.00 41.90 3.32
225 226 4.954970 AGGCGGCCCTGTGTGTTG 62.955 66.667 17.02 0.00 40.94 3.33
227 228 4.947147 GCGGCCCTGTGTGTTGGA 62.947 66.667 0.00 0.00 0.00 3.53
228 229 2.034066 CGGCCCTGTGTGTTGGAT 59.966 61.111 0.00 0.00 0.00 3.41
229 230 2.334946 CGGCCCTGTGTGTTGGATG 61.335 63.158 0.00 0.00 0.00 3.51
230 231 2.639327 GGCCCTGTGTGTTGGATGC 61.639 63.158 0.00 0.00 0.00 3.91
231 232 1.604593 GCCCTGTGTGTTGGATGCT 60.605 57.895 0.00 0.00 0.00 3.79
232 233 1.181098 GCCCTGTGTGTTGGATGCTT 61.181 55.000 0.00 0.00 0.00 3.91
233 234 0.599558 CCCTGTGTGTTGGATGCTTG 59.400 55.000 0.00 0.00 0.00 4.01
234 235 1.608055 CCTGTGTGTTGGATGCTTGA 58.392 50.000 0.00 0.00 0.00 3.02
235 236 1.955778 CCTGTGTGTTGGATGCTTGAA 59.044 47.619 0.00 0.00 0.00 2.69
236 237 2.030540 CCTGTGTGTTGGATGCTTGAAG 60.031 50.000 0.00 0.00 0.00 3.02
237 238 1.955778 TGTGTGTTGGATGCTTGAAGG 59.044 47.619 0.00 0.00 0.00 3.46
238 239 0.961019 TGTGTTGGATGCTTGAAGGC 59.039 50.000 0.00 0.00 0.00 4.35
239 240 1.251251 GTGTTGGATGCTTGAAGGCT 58.749 50.000 0.00 0.00 0.00 4.58
240 241 1.200948 GTGTTGGATGCTTGAAGGCTC 59.799 52.381 0.00 0.00 0.00 4.70
241 242 1.202915 TGTTGGATGCTTGAAGGCTCA 60.203 47.619 0.00 0.00 0.00 4.26
242 243 1.888512 GTTGGATGCTTGAAGGCTCAA 59.111 47.619 0.00 0.00 39.30 3.02
243 244 2.494870 GTTGGATGCTTGAAGGCTCAAT 59.505 45.455 0.00 0.00 40.78 2.57
244 245 2.372264 TGGATGCTTGAAGGCTCAATC 58.628 47.619 0.00 0.00 40.78 2.67
245 246 1.332997 GGATGCTTGAAGGCTCAATCG 59.667 52.381 0.00 0.00 40.78 3.34
246 247 1.332997 GATGCTTGAAGGCTCAATCGG 59.667 52.381 0.00 0.00 40.78 4.18
247 248 1.308069 TGCTTGAAGGCTCAATCGGC 61.308 55.000 0.00 0.00 40.78 5.54
248 249 1.028868 GCTTGAAGGCTCAATCGGCT 61.029 55.000 0.00 0.00 40.78 5.52
252 253 3.890527 AAGGCTCAATCGGCTTGAT 57.109 47.368 0.00 0.00 46.48 2.57
254 255 3.281727 AAGGCTCAATCGGCTTGATAA 57.718 42.857 0.00 0.00 46.48 1.75
255 256 3.498774 AGGCTCAATCGGCTTGATAAT 57.501 42.857 0.00 0.00 42.87 1.28
256 257 3.825328 AGGCTCAATCGGCTTGATAATT 58.175 40.909 0.00 0.00 42.87 1.40
257 258 4.210331 AGGCTCAATCGGCTTGATAATTT 58.790 39.130 0.00 0.00 42.87 1.82
258 259 4.276926 AGGCTCAATCGGCTTGATAATTTC 59.723 41.667 0.00 0.00 42.87 2.17
259 260 4.276926 GGCTCAATCGGCTTGATAATTTCT 59.723 41.667 0.00 0.00 42.87 2.52
260 261 5.221126 GGCTCAATCGGCTTGATAATTTCTT 60.221 40.000 0.00 0.00 42.87 2.52
261 262 5.684626 GCTCAATCGGCTTGATAATTTCTTG 59.315 40.000 0.00 0.00 42.87 3.02
262 263 6.458751 GCTCAATCGGCTTGATAATTTCTTGA 60.459 38.462 0.00 0.00 42.87 3.02
263 264 7.389803 TCAATCGGCTTGATAATTTCTTGAA 57.610 32.000 0.00 0.00 38.97 2.69
264 265 7.475015 TCAATCGGCTTGATAATTTCTTGAAG 58.525 34.615 0.00 0.00 38.97 3.02
265 266 7.121168 TCAATCGGCTTGATAATTTCTTGAAGT 59.879 33.333 0.00 0.00 38.97 3.01
266 267 6.182039 TCGGCTTGATAATTTCTTGAAGTG 57.818 37.500 0.00 0.00 0.00 3.16
267 268 5.705441 TCGGCTTGATAATTTCTTGAAGTGT 59.295 36.000 0.00 0.00 0.00 3.55
268 269 6.024049 CGGCTTGATAATTTCTTGAAGTGTC 58.976 40.000 0.00 0.00 0.00 3.67
269 270 6.348458 CGGCTTGATAATTTCTTGAAGTGTCA 60.348 38.462 0.00 0.00 32.74 3.58
270 271 7.025963 GGCTTGATAATTTCTTGAAGTGTCAG 58.974 38.462 0.00 0.00 35.42 3.51
271 272 7.025963 GCTTGATAATTTCTTGAAGTGTCAGG 58.974 38.462 0.00 0.00 35.42 3.86
272 273 7.452880 TTGATAATTTCTTGAAGTGTCAGGG 57.547 36.000 0.00 0.00 35.42 4.45
273 274 5.945784 TGATAATTTCTTGAAGTGTCAGGGG 59.054 40.000 0.00 0.00 34.49 4.79
274 275 2.656947 TTTCTTGAAGTGTCAGGGGG 57.343 50.000 0.00 0.00 34.49 5.40
275 276 1.814429 TTCTTGAAGTGTCAGGGGGA 58.186 50.000 0.00 0.00 34.49 4.81
276 277 1.352083 TCTTGAAGTGTCAGGGGGAG 58.648 55.000 0.00 0.00 34.49 4.30
277 278 0.322008 CTTGAAGTGTCAGGGGGAGC 60.322 60.000 0.00 0.00 34.49 4.70
278 279 1.779061 TTGAAGTGTCAGGGGGAGCC 61.779 60.000 0.00 0.00 34.49 4.70
279 280 3.316573 GAAGTGTCAGGGGGAGCCG 62.317 68.421 0.00 0.00 0.00 5.52
280 281 3.846405 AAGTGTCAGGGGGAGCCGA 62.846 63.158 0.00 0.00 0.00 5.54
281 282 3.083997 GTGTCAGGGGGAGCCGAT 61.084 66.667 0.00 0.00 0.00 4.18
282 283 2.285368 TGTCAGGGGGAGCCGATT 60.285 61.111 0.00 0.00 0.00 3.34
283 284 1.002403 TGTCAGGGGGAGCCGATTA 59.998 57.895 0.00 0.00 0.00 1.75
284 285 1.048724 TGTCAGGGGGAGCCGATTAG 61.049 60.000 0.00 0.00 0.00 1.73
285 286 1.459539 TCAGGGGGAGCCGATTAGG 60.460 63.158 0.00 0.00 44.97 2.69
295 296 1.366366 CCGATTAGGCTACCCGTGG 59.634 63.158 11.99 0.08 35.76 4.94
296 297 1.300697 CGATTAGGCTACCCGTGGC 60.301 63.158 0.00 0.00 35.76 5.01
302 303 4.968370 GCTACCCGTGGCCATTTA 57.032 55.556 9.72 0.00 0.00 1.40
303 304 2.400911 GCTACCCGTGGCCATTTAC 58.599 57.895 9.72 0.00 0.00 2.01
304 305 0.107361 GCTACCCGTGGCCATTTACT 60.107 55.000 9.72 0.00 0.00 2.24
305 306 1.949465 CTACCCGTGGCCATTTACTC 58.051 55.000 9.72 0.00 0.00 2.59
306 307 0.542805 TACCCGTGGCCATTTACTCC 59.457 55.000 9.72 0.00 0.00 3.85
307 308 1.817941 CCCGTGGCCATTTACTCCG 60.818 63.158 9.72 5.55 0.00 4.63
308 309 1.219664 CCGTGGCCATTTACTCCGA 59.780 57.895 9.72 0.00 0.00 4.55
309 310 1.087771 CCGTGGCCATTTACTCCGAC 61.088 60.000 9.72 0.00 0.00 4.79
310 311 0.390603 CGTGGCCATTTACTCCGACA 60.391 55.000 9.72 0.00 0.00 4.35
320 321 1.537814 TACTCCGACACGCCACCATT 61.538 55.000 0.00 0.00 0.00 3.16
360 364 2.434428 ACTATTCGAGACGACACCACT 58.566 47.619 0.00 0.00 34.89 4.00
416 428 4.546224 AACCAAAAAGAACTCCCCCTAA 57.454 40.909 0.00 0.00 0.00 2.69
571 587 7.690228 TGTGTGTTGTTTAGCTAAACTAACAG 58.310 34.615 35.80 0.00 44.36 3.16
619 635 3.055819 ACATCATCCGCTAAACACAGACT 60.056 43.478 0.00 0.00 0.00 3.24
623 640 1.000506 TCCGCTAAACACAGACTCCAC 59.999 52.381 0.00 0.00 0.00 4.02
628 645 3.558418 GCTAAACACAGACTCCACGAAAA 59.442 43.478 0.00 0.00 0.00 2.29
692 709 4.973663 CGAAACTTTTGAAAACTACGGCAT 59.026 37.500 0.00 0.00 0.00 4.40
698 715 7.259161 ACTTTTGAAAACTACGGCATAAAACA 58.741 30.769 0.00 0.00 0.00 2.83
903 979 1.150536 GGGCCCAGAAATGCGGATA 59.849 57.895 19.95 0.00 0.00 2.59
913 989 3.584848 AGAAATGCGGATAGAGCCCTAAT 59.415 43.478 0.00 0.00 0.00 1.73
1095 1171 2.583441 TTCAGGCCACTCCACTCCG 61.583 63.158 5.01 0.00 37.29 4.63
1342 1616 2.264794 GTCGACGCCATGTTCCCT 59.735 61.111 0.00 0.00 0.00 4.20
1705 1979 2.611518 CAAGGTGCTAGGTTTCTCTCG 58.388 52.381 0.00 0.00 0.00 4.04
1725 1999 4.503910 TCGTTCAATCCTGTGAATGGTAG 58.496 43.478 7.17 0.00 42.42 3.18
1741 2015 1.275573 GGTAGCTGGAAGTTCGAGGTT 59.724 52.381 22.13 4.38 34.79 3.50
1762 2036 3.674997 TGATCACTTCAGTAGGTTTGGC 58.325 45.455 0.00 0.00 0.00 4.52
1846 2120 0.402121 AAGCAAGAGACCCACCTTCC 59.598 55.000 0.00 0.00 0.00 3.46
1954 2228 4.996793 TGTTTCCCAATGATGAGGAAGAA 58.003 39.130 0.00 0.00 37.27 2.52
1965 2239 4.533707 TGATGAGGAAGAAGAAGACATGGT 59.466 41.667 0.00 0.00 0.00 3.55
2300 2574 7.109501 TGCTGGAAAAGTATATTCTAACTGCA 58.890 34.615 0.00 0.00 0.00 4.41
2562 2836 5.559148 ATTCTGGAAACTGAGTCTGACTT 57.441 39.130 12.27 0.00 39.62 3.01
3158 3432 8.472413 ACAGGTTAAAGATATACGAGTTGCTTA 58.528 33.333 0.00 0.00 0.00 3.09
3469 3743 1.913317 TCAGTGCATTCTCGTCATCG 58.087 50.000 0.00 0.00 38.55 3.84
3586 3860 6.618287 TTGAGTTTTGTCCATCAGTTACTG 57.382 37.500 5.94 5.94 0.00 2.74
4081 4355 5.084519 TGTCATGTAAGTCTTCCCTACACT 58.915 41.667 0.00 0.00 0.00 3.55
4082 4356 5.047306 TGTCATGTAAGTCTTCCCTACACTG 60.047 44.000 0.00 0.00 0.00 3.66
4083 4357 3.955650 TGTAAGTCTTCCCTACACTGC 57.044 47.619 0.00 0.00 0.00 4.40
4084 4358 3.236047 TGTAAGTCTTCCCTACACTGCA 58.764 45.455 0.00 0.00 0.00 4.41
4195 4470 7.545965 TCCGATCAAAAATCTAGAAGACAGAAC 59.454 37.037 0.00 0.00 0.00 3.01
4485 4761 7.432838 CGTTAACTAGAATTCTCTTGGCTACTC 59.567 40.741 12.24 0.00 32.70 2.59
4632 4908 5.221880 TGCATGAGTTTGTAATTGCTTGTC 58.778 37.500 0.00 0.00 0.00 3.18
4806 5082 7.818997 ACTATGGACGATGATTCAGTAAGTA 57.181 36.000 0.00 0.00 0.00 2.24
4807 5083 8.410673 ACTATGGACGATGATTCAGTAAGTAT 57.589 34.615 0.00 0.00 0.00 2.12
4808 5084 8.861086 ACTATGGACGATGATTCAGTAAGTATT 58.139 33.333 0.00 0.00 0.00 1.89
4809 5085 9.347934 CTATGGACGATGATTCAGTAAGTATTC 57.652 37.037 0.00 0.00 0.00 1.75
4810 5086 6.513180 TGGACGATGATTCAGTAAGTATTCC 58.487 40.000 0.00 0.00 0.00 3.01
4811 5087 5.629849 GGACGATGATTCAGTAAGTATTCCG 59.370 44.000 0.00 0.00 0.00 4.30
4812 5088 6.145338 ACGATGATTCAGTAAGTATTCCGT 57.855 37.500 0.00 0.00 0.00 4.69
4822 5098 9.941325 TTCAGTAAGTATTCCGTATTTTTACCA 57.059 29.630 0.00 0.00 0.00 3.25
4988 5265 7.256475 CCATTGAGGCAAGGTAAGATAGTATCT 60.256 40.741 6.86 6.86 42.61 1.98
4996 5273 7.386299 GCAAGGTAAGATAGTATCTGTTGATGG 59.614 40.741 13.47 3.16 40.13 3.51
5027 5308 7.381789 TCCATAACCTGCAACTAACCATATA 57.618 36.000 0.00 0.00 0.00 0.86
5061 5343 2.819608 TGAAACTGTTAGGCTTCCATGC 59.180 45.455 0.00 0.00 0.00 4.06
5441 5749 4.722700 CAACGCCCCTGTCCCCAG 62.723 72.222 0.00 0.00 38.50 4.45
5521 5829 2.432510 GGGGACTCATTCTAGGTGACTG 59.567 54.545 0.00 0.00 43.88 3.51
5696 6012 1.166531 GGTCGGTGCAAAGAAGTGCT 61.167 55.000 0.00 0.00 45.17 4.40
5765 6081 3.058224 GCGTGCCACTTTTCTTGTAATCT 60.058 43.478 0.00 0.00 0.00 2.40
5766 6082 4.466828 CGTGCCACTTTTCTTGTAATCTG 58.533 43.478 0.00 0.00 0.00 2.90
5822 6138 9.615295 TTTTTGTTATTATTACGAAGAACAGCC 57.385 29.630 0.00 0.00 40.51 4.85
5845 6167 2.305927 CTCATGTAGGGTTGGAAGGTGT 59.694 50.000 0.00 0.00 0.00 4.16
5869 6197 3.996363 TGTCAGTGTGGATTGAAAGATCG 59.004 43.478 0.00 0.00 0.00 3.69
5891 6219 7.028926 TCGAAGAGTTGTTGTAGATCTATCC 57.971 40.000 5.57 0.00 0.00 2.59
5892 6220 6.039493 TCGAAGAGTTGTTGTAGATCTATCCC 59.961 42.308 5.57 0.00 0.00 3.85
5913 6241 1.597663 CGGGTAAATCGTTGGCTGATC 59.402 52.381 0.00 0.00 0.00 2.92
5919 6247 5.353123 GGTAAATCGTTGGCTGATCTTTGTA 59.647 40.000 0.00 0.00 0.00 2.41
5921 6249 2.346803 TCGTTGGCTGATCTTTGTAGC 58.653 47.619 0.00 0.00 36.74 3.58
5923 6251 2.076863 GTTGGCTGATCTTTGTAGCGT 58.923 47.619 0.00 0.00 38.31 5.07
5942 6270 2.222999 CGTTGCGCACATGATGTTATCA 60.223 45.455 11.12 0.00 44.55 2.15
6005 6335 1.000993 TGTGGTTTGTGCAAGGGGT 59.999 52.632 0.00 0.00 0.00 4.95
6015 6348 4.296265 CAAGGGGTGCCTCGTAAC 57.704 61.111 0.00 0.00 0.00 2.50
6084 7015 1.963515 ACATGCGGGCTTTTCTTTCTT 59.036 42.857 0.00 0.00 0.00 2.52
6090 7021 3.621268 GCGGGCTTTTCTTTCTTGTTTTT 59.379 39.130 0.00 0.00 0.00 1.94
6137 7069 7.330946 CCAGTTTCTGTATCGTGTTATTTCTCA 59.669 37.037 0.00 0.00 0.00 3.27
6145 7077 2.864343 CGTGTTATTTCTCATCGGTCCC 59.136 50.000 0.00 0.00 0.00 4.46
6146 7078 3.430374 CGTGTTATTTCTCATCGGTCCCT 60.430 47.826 0.00 0.00 0.00 4.20
6147 7079 4.120589 GTGTTATTTCTCATCGGTCCCTC 58.879 47.826 0.00 0.00 0.00 4.30
6148 7080 3.134081 TGTTATTTCTCATCGGTCCCTCC 59.866 47.826 0.00 0.00 0.00 4.30
6149 7081 2.182516 ATTTCTCATCGGTCCCTCCT 57.817 50.000 0.00 0.00 0.00 3.69
6286 7219 3.999769 TGACTCGAGAATTCGTCGTTAG 58.000 45.455 21.68 15.20 46.72 2.34
6288 7221 4.001017 ACTCGAGAATTCGTCGTTAGTC 57.999 45.455 21.68 3.12 46.72 2.59
6291 7224 3.120546 TCGAGAATTCGTCGTTAGTCGTT 60.121 43.478 19.64 0.00 46.72 3.85
6292 7225 4.091365 TCGAGAATTCGTCGTTAGTCGTTA 59.909 41.667 19.64 3.04 46.72 3.18
6293 7226 4.429485 CGAGAATTCGTCGTTAGTCGTTAG 59.571 45.833 15.03 0.00 41.84 2.34
6294 7227 5.288543 AGAATTCGTCGTTAGTCGTTAGT 57.711 39.130 0.00 0.00 40.80 2.24
6295 7228 5.319931 AGAATTCGTCGTTAGTCGTTAGTC 58.680 41.667 0.00 0.00 40.80 2.59
6296 7229 2.769387 TCGTCGTTAGTCGTTAGTCG 57.231 50.000 0.00 0.00 40.80 4.18
6297 7230 2.058798 TCGTCGTTAGTCGTTAGTCGT 58.941 47.619 0.00 0.00 40.80 4.34
6298 7231 2.090658 TCGTCGTTAGTCGTTAGTCGTC 59.909 50.000 0.00 0.00 40.80 4.20
6299 7232 2.091277 CGTCGTTAGTCGTTAGTCGTCT 59.909 50.000 0.00 0.00 40.50 4.18
6300 7233 3.300853 CGTCGTTAGTCGTTAGTCGTCTA 59.699 47.826 0.00 0.00 38.63 2.59
6315 7248 9.415544 GTTAGTCGTCTAATCTAAAACAAAGGA 57.584 33.333 5.44 0.00 38.25 3.36
6317 7250 8.897872 AGTCGTCTAATCTAAAACAAAGGAAA 57.102 30.769 0.00 0.00 0.00 3.13
6380 7344 7.914537 CAACAACTGGAAGATAAACAAGTTC 57.085 36.000 0.00 0.00 37.43 3.01
6385 7349 9.442047 CAACTGGAAGATAAACAAGTTCTCTAT 57.558 33.333 0.00 0.00 37.43 1.98
6424 7388 4.349048 AGCCTGGAAGATACATATCTGCAA 59.651 41.667 8.81 0.00 41.96 4.08
6437 7401 2.034843 TGCAACGCCAATAGCCCA 59.965 55.556 0.00 0.00 38.78 5.36
6600 7618 2.816083 CGGCGTGGCGGAAACATA 60.816 61.111 8.05 0.00 0.00 2.29
6699 7717 0.459585 GCTTATCCGAACCGAGCACA 60.460 55.000 0.00 0.00 33.68 4.57
6703 7721 4.657824 CCGAACCGAGCACACCGT 62.658 66.667 0.00 0.00 0.00 4.83
6706 7724 1.007038 GAACCGAGCACACCGTGTA 60.007 57.895 3.25 0.00 35.75 2.90
6966 7984 3.623703 GAGGGTGAACTTCGGGGCC 62.624 68.421 0.00 0.00 0.00 5.80
6969 7987 2.741211 GTGAACTTCGGGGCCGTC 60.741 66.667 0.00 0.00 40.74 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.250234 CGAGATTGCACCCTCAAGGA 59.750 55.000 13.15 0.00 39.89 3.36
1 2 0.745845 CCGAGATTGCACCCTCAAGG 60.746 60.000 13.15 5.19 43.78 3.61
2 3 1.372087 GCCGAGATTGCACCCTCAAG 61.372 60.000 13.15 6.36 0.00 3.02
3 4 1.377202 GCCGAGATTGCACCCTCAA 60.377 57.895 13.15 0.00 0.00 3.02
4 5 2.268920 GCCGAGATTGCACCCTCA 59.731 61.111 13.15 0.00 0.00 3.86
5 6 2.514824 GGCCGAGATTGCACCCTC 60.515 66.667 4.81 4.81 0.00 4.30
6 7 4.473520 CGGCCGAGATTGCACCCT 62.474 66.667 24.07 0.00 0.00 4.34
9 10 3.127533 AAGCGGCCGAGATTGCAC 61.128 61.111 33.48 8.41 0.00 4.57
10 11 3.126879 CAAGCGGCCGAGATTGCA 61.127 61.111 33.48 0.00 30.59 4.08
12 13 2.821366 AGCAAGCGGCCGAGATTG 60.821 61.111 33.48 28.18 46.50 2.67
13 14 2.821366 CAGCAAGCGGCCGAGATT 60.821 61.111 33.48 17.43 46.50 2.40
14 15 4.845580 CCAGCAAGCGGCCGAGAT 62.846 66.667 33.48 14.15 46.50 2.75
24 25 4.785453 GGACCGGCTCCCAGCAAG 62.785 72.222 0.00 0.00 44.75 4.01
28 29 3.151022 GAGAGGACCGGCTCCCAG 61.151 72.222 16.57 0.00 40.53 4.45
31 32 3.827898 CACGAGAGGACCGGCTCC 61.828 72.222 13.42 13.42 39.81 4.70
32 33 3.827898 CCACGAGAGGACCGGCTC 61.828 72.222 0.00 0.00 0.00 4.70
40 41 4.899239 GATGCCGGCCACGAGAGG 62.899 72.222 26.77 0.00 44.60 3.69
50 51 4.873129 CCGACTCCACGATGCCGG 62.873 72.222 0.00 0.00 40.78 6.13
51 52 4.129737 ACCGACTCCACGATGCCG 62.130 66.667 0.00 0.00 42.50 5.69
52 53 2.202756 GACCGACTCCACGATGCC 60.203 66.667 0.00 0.00 35.09 4.40
53 54 0.802607 GAAGACCGACTCCACGATGC 60.803 60.000 0.00 0.00 35.09 3.91
54 55 0.811915 AGAAGACCGACTCCACGATG 59.188 55.000 0.00 0.00 35.09 3.84
55 56 1.202582 CAAGAAGACCGACTCCACGAT 59.797 52.381 0.00 0.00 35.09 3.73
56 57 0.596577 CAAGAAGACCGACTCCACGA 59.403 55.000 0.00 0.00 35.09 4.35
57 58 1.009389 GCAAGAAGACCGACTCCACG 61.009 60.000 0.00 0.00 0.00 4.94
58 59 1.009389 CGCAAGAAGACCGACTCCAC 61.009 60.000 0.00 0.00 43.02 4.02
59 60 1.289066 CGCAAGAAGACCGACTCCA 59.711 57.895 0.00 0.00 43.02 3.86
60 61 1.446272 CCGCAAGAAGACCGACTCC 60.446 63.158 0.00 0.00 43.02 3.85
61 62 2.095252 GCCGCAAGAAGACCGACTC 61.095 63.158 0.00 0.00 43.02 3.36
62 63 2.048127 GCCGCAAGAAGACCGACT 60.048 61.111 0.00 0.00 43.02 4.18
63 64 3.119096 GGCCGCAAGAAGACCGAC 61.119 66.667 0.00 0.00 43.02 4.79
64 65 4.735132 CGGCCGCAAGAAGACCGA 62.735 66.667 14.67 0.00 46.71 4.69
68 69 4.329545 AAGCCGGCCGCAAGAAGA 62.330 61.111 26.15 0.00 41.38 2.87
69 70 3.804193 GAAGCCGGCCGCAAGAAG 61.804 66.667 26.15 5.95 41.38 2.85
70 71 4.329545 AGAAGCCGGCCGCAAGAA 62.330 61.111 26.15 0.00 41.38 2.52
77 78 4.475135 GACTCCCAGAAGCCGGCC 62.475 72.222 26.15 9.10 0.00 6.13
78 79 4.821589 CGACTCCCAGAAGCCGGC 62.822 72.222 21.89 21.89 0.00 6.13
79 80 4.148825 CCGACTCCCAGAAGCCGG 62.149 72.222 0.00 0.00 0.00 6.13
80 81 3.358076 GACCGACTCCCAGAAGCCG 62.358 68.421 0.00 0.00 0.00 5.52
81 82 1.950973 GAGACCGACTCCCAGAAGCC 61.951 65.000 0.00 0.00 39.53 4.35
82 83 1.513622 GAGACCGACTCCCAGAAGC 59.486 63.158 0.00 0.00 39.53 3.86
90 91 3.020237 GCCCCAAGGAGACCGACTC 62.020 68.421 0.00 0.00 44.24 3.36
91 92 3.003763 GCCCCAAGGAGACCGACT 61.004 66.667 0.00 0.00 33.47 4.18
92 93 4.097361 GGCCCCAAGGAGACCGAC 62.097 72.222 0.00 0.00 33.47 4.79
98 99 4.803908 GAAGCCGGCCCCAAGGAG 62.804 72.222 26.15 0.00 33.47 3.69
106 107 4.475135 GACTCCAGGAAGCCGGCC 62.475 72.222 26.15 8.83 0.00 6.13
107 108 4.821589 CGACTCCAGGAAGCCGGC 62.822 72.222 21.89 21.89 0.00 6.13
108 109 4.148825 CCGACTCCAGGAAGCCGG 62.149 72.222 0.00 0.00 0.00 6.13
109 110 4.821589 GCCGACTCCAGGAAGCCG 62.822 72.222 0.00 0.00 0.00 5.52
110 111 4.475135 GGCCGACTCCAGGAAGCC 62.475 72.222 4.19 4.19 0.00 4.35
111 112 2.932130 GATGGCCGACTCCAGGAAGC 62.932 65.000 0.00 0.00 39.89 3.86
112 113 1.144936 GATGGCCGACTCCAGGAAG 59.855 63.158 0.00 0.00 39.89 3.46
113 114 0.909610 AAGATGGCCGACTCCAGGAA 60.910 55.000 0.00 0.00 39.89 3.36
114 115 1.306141 AAGATGGCCGACTCCAGGA 60.306 57.895 0.00 0.00 39.89 3.86
115 116 1.153289 CAAGATGGCCGACTCCAGG 60.153 63.158 0.00 0.00 39.89 4.45
116 117 0.742281 CACAAGATGGCCGACTCCAG 60.742 60.000 0.00 0.00 39.89 3.86
117 118 1.296392 CACAAGATGGCCGACTCCA 59.704 57.895 0.00 0.00 40.97 3.86
118 119 1.450312 CCACAAGATGGCCGACTCC 60.450 63.158 0.00 0.00 43.24 3.85
119 120 4.208632 CCACAAGATGGCCGACTC 57.791 61.111 0.00 0.00 43.24 3.36
126 127 6.427704 CTTCCCGAAGATAACCACAAGATGG 61.428 48.000 0.00 0.00 46.78 3.51
127 128 4.137116 TCCCGAAGATAACCACAAGATG 57.863 45.455 0.00 0.00 0.00 2.90
128 129 4.384208 CCTTCCCGAAGATAACCACAAGAT 60.384 45.833 6.01 0.00 40.79 2.40
129 130 3.055385 CCTTCCCGAAGATAACCACAAGA 60.055 47.826 6.01 0.00 40.79 3.02
130 131 3.270877 CCTTCCCGAAGATAACCACAAG 58.729 50.000 6.01 0.00 40.79 3.16
131 132 2.640826 ACCTTCCCGAAGATAACCACAA 59.359 45.455 6.01 0.00 40.79 3.33
132 133 2.262637 ACCTTCCCGAAGATAACCACA 58.737 47.619 6.01 0.00 40.79 4.17
133 134 3.055312 AGAACCTTCCCGAAGATAACCAC 60.055 47.826 6.01 0.00 40.79 4.16
134 135 3.178865 AGAACCTTCCCGAAGATAACCA 58.821 45.455 6.01 0.00 40.79 3.67
135 136 3.908643 AGAACCTTCCCGAAGATAACC 57.091 47.619 6.01 0.00 40.79 2.85
136 137 4.828829 TCAAGAACCTTCCCGAAGATAAC 58.171 43.478 6.01 0.00 40.79 1.89
137 138 4.081087 CCTCAAGAACCTTCCCGAAGATAA 60.081 45.833 6.01 0.00 40.79 1.75
138 139 3.451178 CCTCAAGAACCTTCCCGAAGATA 59.549 47.826 6.01 0.00 40.79 1.98
139 140 2.237392 CCTCAAGAACCTTCCCGAAGAT 59.763 50.000 6.01 0.00 40.79 2.40
140 141 1.623811 CCTCAAGAACCTTCCCGAAGA 59.376 52.381 6.01 0.00 40.79 2.87
141 142 1.348036 ACCTCAAGAACCTTCCCGAAG 59.652 52.381 0.00 0.00 38.14 3.79
142 143 1.346722 GACCTCAAGAACCTTCCCGAA 59.653 52.381 0.00 0.00 0.00 4.30
143 144 0.974383 GACCTCAAGAACCTTCCCGA 59.026 55.000 0.00 0.00 0.00 5.14
144 145 0.389948 CGACCTCAAGAACCTTCCCG 60.390 60.000 0.00 0.00 0.00 5.14
145 146 0.036294 CCGACCTCAAGAACCTTCCC 60.036 60.000 0.00 0.00 0.00 3.97
146 147 0.036294 CCCGACCTCAAGAACCTTCC 60.036 60.000 0.00 0.00 0.00 3.46
147 148 0.685660 ACCCGACCTCAAGAACCTTC 59.314 55.000 0.00 0.00 0.00 3.46
148 149 0.685660 GACCCGACCTCAAGAACCTT 59.314 55.000 0.00 0.00 0.00 3.50
149 150 1.533469 CGACCCGACCTCAAGAACCT 61.533 60.000 0.00 0.00 0.00 3.50
150 151 1.080025 CGACCCGACCTCAAGAACC 60.080 63.158 0.00 0.00 0.00 3.62
151 152 1.737008 GCGACCCGACCTCAAGAAC 60.737 63.158 0.00 0.00 0.00 3.01
152 153 2.654877 GCGACCCGACCTCAAGAA 59.345 61.111 0.00 0.00 0.00 2.52
153 154 3.379445 GGCGACCCGACCTCAAGA 61.379 66.667 0.00 0.00 0.00 3.02
154 155 2.837371 GAAGGCGACCCGACCTCAAG 62.837 65.000 0.00 0.00 34.11 3.02
155 156 2.920912 AAGGCGACCCGACCTCAA 60.921 61.111 0.00 0.00 34.11 3.02
156 157 3.379445 GAAGGCGACCCGACCTCA 61.379 66.667 0.00 0.00 34.11 3.86
157 158 4.144703 GGAAGGCGACCCGACCTC 62.145 72.222 0.00 0.00 34.11 3.85
174 175 0.592148 GTCTCATAGGCCGACTACCG 59.408 60.000 0.00 0.00 33.70 4.02
175 176 1.609555 CTGTCTCATAGGCCGACTACC 59.390 57.143 8.86 0.00 33.70 3.18
176 177 1.001158 GCTGTCTCATAGGCCGACTAC 60.001 57.143 8.86 0.13 33.70 2.73
177 178 1.319541 GCTGTCTCATAGGCCGACTA 58.680 55.000 8.86 0.00 35.80 2.59
178 179 1.395826 GGCTGTCTCATAGGCCGACT 61.396 60.000 8.86 0.00 35.08 4.18
179 180 1.068250 GGCTGTCTCATAGGCCGAC 59.932 63.158 0.00 0.00 35.08 4.79
180 181 3.538614 GGCTGTCTCATAGGCCGA 58.461 61.111 0.00 0.00 35.08 5.54
182 183 2.423446 CCGGCTGTCTCATAGGCC 59.577 66.667 0.00 0.00 41.02 5.19
183 184 2.280457 GCCGGCTGTCTCATAGGC 60.280 66.667 22.15 0.00 37.61 3.93
184 185 2.374830 CTGGCCGGCTGTCTCATAGG 62.375 65.000 28.56 0.00 0.00 2.57
185 186 1.068753 CTGGCCGGCTGTCTCATAG 59.931 63.158 28.56 8.09 0.00 2.23
186 187 2.434843 CCTGGCCGGCTGTCTCATA 61.435 63.158 28.56 1.89 0.00 2.15
187 188 3.790437 CCTGGCCGGCTGTCTCAT 61.790 66.667 28.56 0.00 0.00 2.90
191 192 4.344865 TTTCCCTGGCCGGCTGTC 62.345 66.667 28.56 10.74 0.00 3.51
192 193 4.351054 CTTTCCCTGGCCGGCTGT 62.351 66.667 28.56 0.00 0.00 4.40
204 205 4.660938 ACACAGGGCCGCCTTTCC 62.661 66.667 9.86 0.00 0.00 3.13
205 206 3.365265 CACACAGGGCCGCCTTTC 61.365 66.667 9.86 0.00 0.00 2.62
206 207 3.731766 AACACACAGGGCCGCCTTT 62.732 57.895 9.86 0.00 0.00 3.11
207 208 4.204028 AACACACAGGGCCGCCTT 62.204 61.111 9.86 0.00 0.00 4.35
208 209 4.954970 CAACACACAGGGCCGCCT 62.955 66.667 9.86 0.00 0.00 5.52
210 211 4.947147 TCCAACACACAGGGCCGC 62.947 66.667 0.00 0.00 0.00 6.53
211 212 2.034066 ATCCAACACACAGGGCCG 59.966 61.111 0.00 0.00 0.00 6.13
212 213 2.639327 GCATCCAACACACAGGGCC 61.639 63.158 0.00 0.00 0.00 5.80
213 214 1.181098 AAGCATCCAACACACAGGGC 61.181 55.000 0.00 0.00 0.00 5.19
214 215 0.599558 CAAGCATCCAACACACAGGG 59.400 55.000 0.00 0.00 0.00 4.45
215 216 1.608055 TCAAGCATCCAACACACAGG 58.392 50.000 0.00 0.00 0.00 4.00
216 217 2.030540 CCTTCAAGCATCCAACACACAG 60.031 50.000 0.00 0.00 0.00 3.66
217 218 1.955778 CCTTCAAGCATCCAACACACA 59.044 47.619 0.00 0.00 0.00 3.72
218 219 1.336240 GCCTTCAAGCATCCAACACAC 60.336 52.381 0.00 0.00 0.00 3.82
219 220 0.961019 GCCTTCAAGCATCCAACACA 59.039 50.000 0.00 0.00 0.00 3.72
220 221 1.200948 GAGCCTTCAAGCATCCAACAC 59.799 52.381 0.00 0.00 34.23 3.32
221 222 1.202915 TGAGCCTTCAAGCATCCAACA 60.203 47.619 0.00 0.00 34.23 3.33
222 223 1.538047 TGAGCCTTCAAGCATCCAAC 58.462 50.000 0.00 0.00 34.23 3.77
223 224 2.291209 TTGAGCCTTCAAGCATCCAA 57.709 45.000 0.00 0.00 38.37 3.53
224 225 2.372264 GATTGAGCCTTCAAGCATCCA 58.628 47.619 0.00 0.00 46.36 3.41
229 230 1.028868 AGCCGATTGAGCCTTCAAGC 61.029 55.000 0.00 0.00 45.89 4.01
230 231 1.131883 CAAGCCGATTGAGCCTTCAAG 59.868 52.381 0.00 0.00 45.89 3.02
231 232 1.167851 CAAGCCGATTGAGCCTTCAA 58.832 50.000 0.00 0.00 46.67 2.69
232 233 0.324614 TCAAGCCGATTGAGCCTTCA 59.675 50.000 0.00 0.00 43.09 3.02
233 234 3.159298 TCAAGCCGATTGAGCCTTC 57.841 52.632 0.00 0.00 43.09 3.46
240 241 7.219535 CACTTCAAGAAATTATCAAGCCGATTG 59.780 37.037 0.00 0.00 40.52 2.67
241 242 7.094205 ACACTTCAAGAAATTATCAAGCCGATT 60.094 33.333 0.00 0.00 35.39 3.34
242 243 6.375455 ACACTTCAAGAAATTATCAAGCCGAT 59.625 34.615 0.00 0.00 38.21 4.18
243 244 5.705441 ACACTTCAAGAAATTATCAAGCCGA 59.295 36.000 0.00 0.00 0.00 5.54
244 245 5.942872 ACACTTCAAGAAATTATCAAGCCG 58.057 37.500 0.00 0.00 0.00 5.52
245 246 6.913170 TGACACTTCAAGAAATTATCAAGCC 58.087 36.000 0.00 0.00 0.00 4.35
246 247 7.025963 CCTGACACTTCAAGAAATTATCAAGC 58.974 38.462 0.00 0.00 0.00 4.01
247 248 7.362401 CCCCTGACACTTCAAGAAATTATCAAG 60.362 40.741 0.00 0.00 0.00 3.02
248 249 6.434028 CCCCTGACACTTCAAGAAATTATCAA 59.566 38.462 0.00 0.00 0.00 2.57
249 250 5.945784 CCCCTGACACTTCAAGAAATTATCA 59.054 40.000 0.00 0.00 0.00 2.15
250 251 5.358160 CCCCCTGACACTTCAAGAAATTATC 59.642 44.000 0.00 0.00 0.00 1.75
251 252 5.015178 TCCCCCTGACACTTCAAGAAATTAT 59.985 40.000 0.00 0.00 0.00 1.28
252 253 4.352595 TCCCCCTGACACTTCAAGAAATTA 59.647 41.667 0.00 0.00 0.00 1.40
253 254 3.140144 TCCCCCTGACACTTCAAGAAATT 59.860 43.478 0.00 0.00 0.00 1.82
254 255 2.716424 TCCCCCTGACACTTCAAGAAAT 59.284 45.455 0.00 0.00 0.00 2.17
255 256 2.106511 CTCCCCCTGACACTTCAAGAAA 59.893 50.000 0.00 0.00 0.00 2.52
256 257 1.699634 CTCCCCCTGACACTTCAAGAA 59.300 52.381 0.00 0.00 0.00 2.52
257 258 1.352083 CTCCCCCTGACACTTCAAGA 58.648 55.000 0.00 0.00 0.00 3.02
258 259 0.322008 GCTCCCCCTGACACTTCAAG 60.322 60.000 0.00 0.00 0.00 3.02
259 260 1.761174 GCTCCCCCTGACACTTCAA 59.239 57.895 0.00 0.00 0.00 2.69
260 261 2.224159 GGCTCCCCCTGACACTTCA 61.224 63.158 0.00 0.00 0.00 3.02
261 262 2.671682 GGCTCCCCCTGACACTTC 59.328 66.667 0.00 0.00 0.00 3.01
262 263 3.322466 CGGCTCCCCCTGACACTT 61.322 66.667 0.00 0.00 0.00 3.16
263 264 3.625632 ATCGGCTCCCCCTGACACT 62.626 63.158 0.00 0.00 0.00 3.55
264 265 1.335132 TAATCGGCTCCCCCTGACAC 61.335 60.000 0.00 0.00 0.00 3.67
265 266 1.002403 TAATCGGCTCCCCCTGACA 59.998 57.895 0.00 0.00 0.00 3.58
266 267 1.749033 CTAATCGGCTCCCCCTGAC 59.251 63.158 0.00 0.00 0.00 3.51
267 268 1.459539 CCTAATCGGCTCCCCCTGA 60.460 63.158 0.00 0.00 0.00 3.86
268 269 3.151906 CCTAATCGGCTCCCCCTG 58.848 66.667 0.00 0.00 0.00 4.45
277 278 1.366366 CCACGGGTAGCCTAATCGG 59.634 63.158 9.73 0.00 0.00 4.18
278 279 1.300697 GCCACGGGTAGCCTAATCG 60.301 63.158 9.73 0.00 0.00 3.34
279 280 1.070957 GGCCACGGGTAGCCTAATC 59.929 63.158 9.73 0.00 46.14 1.75
280 281 3.237414 GGCCACGGGTAGCCTAAT 58.763 61.111 9.73 0.00 46.14 1.73
285 286 0.107361 AGTAAATGGCCACGGGTAGC 60.107 55.000 8.16 0.00 0.00 3.58
286 287 1.474498 GGAGTAAATGGCCACGGGTAG 60.474 57.143 8.16 0.00 0.00 3.18
287 288 0.542805 GGAGTAAATGGCCACGGGTA 59.457 55.000 8.16 0.00 0.00 3.69
288 289 1.301954 GGAGTAAATGGCCACGGGT 59.698 57.895 8.16 0.00 0.00 5.28
289 290 1.817941 CGGAGTAAATGGCCACGGG 60.818 63.158 8.16 0.00 0.00 5.28
290 291 1.087771 GTCGGAGTAAATGGCCACGG 61.088 60.000 8.16 0.00 0.00 4.94
291 292 0.390603 TGTCGGAGTAAATGGCCACG 60.391 55.000 8.16 5.22 0.00 4.94
292 293 1.084289 GTGTCGGAGTAAATGGCCAC 58.916 55.000 8.16 0.00 0.00 5.01
293 294 0.390603 CGTGTCGGAGTAAATGGCCA 60.391 55.000 8.56 8.56 0.00 5.36
294 295 1.702491 GCGTGTCGGAGTAAATGGCC 61.702 60.000 0.00 0.00 0.00 5.36
295 296 1.702491 GGCGTGTCGGAGTAAATGGC 61.702 60.000 0.00 0.00 0.00 4.40
296 297 0.390603 TGGCGTGTCGGAGTAAATGG 60.391 55.000 0.00 0.00 0.00 3.16
297 298 0.719465 GTGGCGTGTCGGAGTAAATG 59.281 55.000 0.00 0.00 0.00 2.32
298 299 0.390735 GGTGGCGTGTCGGAGTAAAT 60.391 55.000 0.00 0.00 0.00 1.40
299 300 1.005867 GGTGGCGTGTCGGAGTAAA 60.006 57.895 0.00 0.00 0.00 2.01
300 301 1.537814 ATGGTGGCGTGTCGGAGTAA 61.538 55.000 0.00 0.00 0.00 2.24
301 302 1.537814 AATGGTGGCGTGTCGGAGTA 61.538 55.000 0.00 0.00 0.00 2.59
302 303 1.537814 TAATGGTGGCGTGTCGGAGT 61.538 55.000 0.00 0.00 0.00 3.85
303 304 0.179084 ATAATGGTGGCGTGTCGGAG 60.179 55.000 0.00 0.00 0.00 4.63
304 305 0.461163 CATAATGGTGGCGTGTCGGA 60.461 55.000 0.00 0.00 0.00 4.55
305 306 0.461163 TCATAATGGTGGCGTGTCGG 60.461 55.000 0.00 0.00 0.00 4.79
306 307 0.930310 CTCATAATGGTGGCGTGTCG 59.070 55.000 0.00 0.00 0.00 4.35
307 308 2.309528 TCTCATAATGGTGGCGTGTC 57.690 50.000 0.00 0.00 0.00 3.67
308 309 3.281727 AATCTCATAATGGTGGCGTGT 57.718 42.857 0.00 0.00 0.00 4.49
309 310 4.631131 TCTAATCTCATAATGGTGGCGTG 58.369 43.478 0.00 0.00 0.00 5.34
310 311 4.800914 GCTCTAATCTCATAATGGTGGCGT 60.801 45.833 0.00 0.00 0.00 5.68
320 321 7.987750 ATAGTTCTCACGCTCTAATCTCATA 57.012 36.000 0.00 0.00 0.00 2.15
416 428 4.568592 GGGGATCCTCATCTCTTGTTTGTT 60.569 45.833 12.58 0.00 28.99 2.83
547 560 7.912383 TCTGTTAGTTTAGCTAAACAACACAC 58.088 34.615 37.77 27.54 45.97 3.82
623 640 0.177141 TATGAGCCCCTCGGTTTTCG 59.823 55.000 0.00 0.00 40.90 3.46
628 645 2.056906 GCCAATATGAGCCCCTCGGT 62.057 60.000 0.00 0.00 32.35 4.69
662 679 7.269724 CGTAGTTTTCAAAAGTTTCGTTTGAGT 59.730 33.333 0.00 2.50 43.76 3.41
803 820 9.950680 TGTAATTTTCTTCTTCTGCTAAAACAG 57.049 29.630 0.00 0.00 39.12 3.16
805 822 9.952188 AGTGTAATTTTCTTCTTCTGCTAAAAC 57.048 29.630 0.00 0.00 0.00 2.43
858 929 4.696479 ATCAGGGCCTAGTGTAATCTTG 57.304 45.455 5.28 0.00 0.00 3.02
933 1009 0.107654 ATTGCGGTCCAGAACTAGGC 60.108 55.000 0.00 0.00 0.00 3.93
1342 1616 2.989253 TCGGAGAAGCGCAGGACA 60.989 61.111 11.47 0.00 0.00 4.02
1705 1979 4.095483 CAGCTACCATTCACAGGATTGAAC 59.905 45.833 0.00 0.00 38.31 3.18
1725 1999 2.003301 GATCAACCTCGAACTTCCAGC 58.997 52.381 0.00 0.00 0.00 4.85
1741 2015 3.559171 GGCCAAACCTACTGAAGTGATCA 60.559 47.826 0.00 0.00 33.92 2.92
1762 2036 0.176680 CATCCTCCTCGTCCACAAGG 59.823 60.000 0.00 0.00 0.00 3.61
1846 2120 0.458669 GCTCCAGTTCATGCCCATTG 59.541 55.000 0.00 0.00 0.00 2.82
1954 2228 1.293062 AGCCATCCACCATGTCTTCT 58.707 50.000 0.00 0.00 0.00 2.85
2300 2574 6.435277 CCCATAAATAAAGCAGCATCCACTAT 59.565 38.462 0.00 0.00 0.00 2.12
3158 3432 1.278127 AGCGCCTTGTATGTTACCAGT 59.722 47.619 2.29 0.00 0.00 4.00
3586 3860 1.270550 CAATGGCACTTCCCAAGACAC 59.729 52.381 0.00 0.00 38.61 3.67
4119 4393 8.611654 TTTATGTAGGTAGGAAAGTGAAACAC 57.388 34.615 0.00 0.00 41.43 3.32
4188 4463 8.273780 AGAAAATGTGGATGAATAGTTCTGTC 57.726 34.615 0.00 0.00 0.00 3.51
4425 4701 1.199327 CTGAATGTTGCTGCCTGTGAG 59.801 52.381 0.00 0.00 0.00 3.51
4485 4761 6.418101 TCTTCATTTCATTAGGTTCTGGAGG 58.582 40.000 0.00 0.00 0.00 4.30
4554 4830 9.039165 TGATAAGATATCCTCAGTCATGCATAA 57.961 33.333 0.00 0.00 0.00 1.90
4632 4908 1.952296 GGCTGAACCATATGCCAAGAG 59.048 52.381 0.00 0.00 44.34 2.85
4829 5105 8.044309 TGTCAACTCGGAAATATTCAGGAAATA 58.956 33.333 0.00 0.00 34.37 1.40
4996 5273 7.173390 GGTTAGTTGCAGGTTATGGATCTATTC 59.827 40.741 0.00 0.00 33.23 1.75
5052 5334 4.192429 AGTTAAAACATGGCATGGAAGC 57.808 40.909 29.49 14.05 33.60 3.86
5061 5343 7.039993 AGCAGGGTTACTTAAGTTAAAACATGG 60.040 37.037 17.81 9.58 0.00 3.66
5148 5430 6.933521 TGCAAATTAATAGCTCCTTGCAAAAA 59.066 30.769 16.68 0.00 44.33 1.94
5149 5431 6.462500 TGCAAATTAATAGCTCCTTGCAAAA 58.538 32.000 16.68 0.00 44.33 2.44
5150 5432 6.035368 TGCAAATTAATAGCTCCTTGCAAA 57.965 33.333 16.68 0.21 44.33 3.68
5151 5433 5.657826 TGCAAATTAATAGCTCCTTGCAA 57.342 34.783 16.68 0.00 44.33 4.08
5152 5434 4.142182 GGTGCAAATTAATAGCTCCTTGCA 60.142 41.667 15.56 15.56 44.90 4.08
5153 5435 4.098501 AGGTGCAAATTAATAGCTCCTTGC 59.901 41.667 21.51 16.99 46.65 4.01
5157 5439 5.835113 TTCAGGTGCAAATTAATAGCTCC 57.165 39.130 18.83 18.83 41.04 4.70
5391 5699 6.705287 CTGAAAGCAGCTCATGAAGAGATCC 61.705 48.000 0.00 0.00 42.09 3.36
5640 5948 1.000827 TGCATCGGACACGCAATTTTT 60.001 42.857 0.00 0.00 40.69 1.94
5696 6012 5.209818 ACTTCAGGAGTTTACAACGATGA 57.790 39.130 0.00 0.00 33.92 2.92
5822 6138 2.840651 ACCTTCCAACCCTACATGAGAG 59.159 50.000 0.00 0.00 0.00 3.20
5845 6167 5.812127 CGATCTTTCAATCCACACTGACATA 59.188 40.000 0.00 0.00 0.00 2.29
5869 6197 6.517605 GGGGATAGATCTACAACAACTCTTC 58.482 44.000 4.10 0.00 0.00 2.87
5891 6219 1.078001 AGCCAACGATTTACCCGGG 60.078 57.895 22.25 22.25 0.00 5.73
5892 6220 0.391927 TCAGCCAACGATTTACCCGG 60.392 55.000 0.00 0.00 0.00 5.73
5921 6249 2.222999 TGATAACATCATGTGCGCAACG 60.223 45.455 14.00 3.11 33.59 4.10
5942 6270 1.795170 AAGCGCGGTTTCTGCAACAT 61.795 50.000 19.31 0.00 37.07 2.71
5976 6304 0.317269 CAAACCACAGCAGCTTCACG 60.317 55.000 0.00 0.00 0.00 4.35
6005 6335 3.697747 CCCCGGTGTTACGAGGCA 61.698 66.667 0.00 0.00 35.47 4.75
6023 6356 2.824041 ATTCATGTCGCCCACCGC 60.824 61.111 0.00 0.00 36.73 5.68
6027 6360 0.545646 TCATCCATTCATGTCGCCCA 59.454 50.000 0.00 0.00 0.00 5.36
6073 7004 7.049140 AGCGAACAAAAACAAGAAAGAAAAG 57.951 32.000 0.00 0.00 0.00 2.27
6074 7005 6.183359 CGAGCGAACAAAAACAAGAAAGAAAA 60.183 34.615 0.00 0.00 0.00 2.29
6084 7015 1.529438 CCTAGCGAGCGAACAAAAACA 59.471 47.619 0.00 0.00 0.00 2.83
6090 7021 4.143333 GGGCCTAGCGAGCGAACA 62.143 66.667 0.84 0.00 0.00 3.18
6108 7039 7.772332 AATAACACGATACAGAAACTGGATC 57.228 36.000 12.41 12.41 45.58 3.36
6110 7041 7.383687 AGAAATAACACGATACAGAAACTGGA 58.616 34.615 0.00 0.00 35.51 3.86
6137 7069 0.479378 GTAGGAGAGGAGGGACCGAT 59.521 60.000 0.00 0.00 44.74 4.18
6145 7077 5.365025 TCCAATGATTTCAGTAGGAGAGGAG 59.635 44.000 0.00 0.00 0.00 3.69
6146 7078 5.280499 TCCAATGATTTCAGTAGGAGAGGA 58.720 41.667 0.00 0.00 0.00 3.71
6147 7079 5.454471 CCTCCAATGATTTCAGTAGGAGAGG 60.454 48.000 19.29 11.46 39.38 3.69
6148 7080 5.365025 TCCTCCAATGATTTCAGTAGGAGAG 59.635 44.000 19.29 12.89 39.38 3.20
6149 7081 5.280499 TCCTCCAATGATTTCAGTAGGAGA 58.720 41.667 19.29 8.94 39.38 3.71
6286 7219 8.440021 TTGTTTTAGATTAGACGACTAACGAC 57.560 34.615 9.49 5.19 45.77 4.34
6291 7224 9.985730 TTTCCTTTGTTTTAGATTAGACGACTA 57.014 29.630 0.00 0.00 0.00 2.59
6292 7225 8.897872 TTTCCTTTGTTTTAGATTAGACGACT 57.102 30.769 0.00 0.00 0.00 4.18
6295 7228 9.262472 CGAATTTCCTTTGTTTTAGATTAGACG 57.738 33.333 0.00 0.00 0.00 4.18
6298 7231 9.262472 CGACGAATTTCCTTTGTTTTAGATTAG 57.738 33.333 0.00 0.00 31.22 1.73
6299 7232 8.776470 ACGACGAATTTCCTTTGTTTTAGATTA 58.224 29.630 0.00 0.00 31.22 1.75
6300 7233 7.645402 ACGACGAATTTCCTTTGTTTTAGATT 58.355 30.769 0.00 0.00 31.22 2.40
6315 7248 0.511221 CAAGCACCGACGACGAATTT 59.489 50.000 9.28 0.00 42.66 1.82
6317 7250 2.380410 GCAAGCACCGACGACGAAT 61.380 57.895 9.28 0.00 42.66 3.34
6365 7298 7.275779 TCACGCATAGAGAACTTGTTTATCTTC 59.724 37.037 7.24 0.00 37.04 2.87
6378 7342 1.272212 TGCACAGTCACGCATAGAGAA 59.728 47.619 0.00 0.00 31.95 2.87
6380 7344 1.275505 CTGCACAGTCACGCATAGAG 58.724 55.000 0.00 0.00 37.54 2.43
6385 7349 2.029518 CTCCTGCACAGTCACGCA 59.970 61.111 0.00 0.00 36.52 5.24
6424 7388 2.438434 GCACTGGGCTATTGGCGT 60.438 61.111 0.00 0.00 42.94 5.68
6597 7615 5.289917 TCGCCTGTTTGTTTGTATGTATG 57.710 39.130 0.00 0.00 0.00 2.39
6598 7616 5.615984 CGTTCGCCTGTTTGTTTGTATGTAT 60.616 40.000 0.00 0.00 0.00 2.29
6599 7617 4.318903 CGTTCGCCTGTTTGTTTGTATGTA 60.319 41.667 0.00 0.00 0.00 2.29
6600 7618 3.547214 CGTTCGCCTGTTTGTTTGTATGT 60.547 43.478 0.00 0.00 0.00 2.29
6671 7689 2.954020 TTCGGATAAGCCTCTGCGCG 62.954 60.000 0.00 0.00 44.33 6.86
6699 7717 1.229400 ATGGGTCTGGGTACACGGT 60.229 57.895 3.31 0.00 0.00 4.83
6703 7721 0.620410 CTGGGATGGGTCTGGGTACA 60.620 60.000 0.00 0.00 0.00 2.90
6706 7724 3.017581 GCTGGGATGGGTCTGGGT 61.018 66.667 0.00 0.00 0.00 4.51
6944 7962 2.669240 CGAAGTTCACCCTCCCCC 59.331 66.667 3.32 0.00 0.00 5.40
6966 7984 2.281484 CCCCACACCTTGGTGACG 60.281 66.667 24.67 14.82 45.25 4.35
6969 7987 2.282462 GAGCCCCACACCTTGGTG 60.282 66.667 17.34 17.34 45.25 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.