Multiple sequence alignment - TraesCS4D01G286300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G286300 chr4D 100.000 2981 0 0 1 2981 456692723 456689743 0.000000e+00 5505.0
1 TraesCS4D01G286300 chr4D 85.463 227 26 7 2607 2830 464508688 464508466 2.310000e-56 230.0
2 TraesCS4D01G286300 chr4A 91.908 2620 123 35 1 2570 11274864 11272284 0.000000e+00 3581.0
3 TraesCS4D01G286300 chr4A 92.537 67 3 2 95 160 11275884 11275819 8.800000e-16 95.3
4 TraesCS4D01G286300 chr4B 92.338 2558 126 27 3 2529 571057891 571060409 0.000000e+00 3574.0
5 TraesCS4D01G286300 chr3D 87.448 239 22 5 2599 2830 482259729 482259492 4.900000e-68 268.0
6 TraesCS4D01G286300 chr3D 97.297 37 1 0 2945 2981 38916139 38916175 2.480000e-06 63.9
7 TraesCS4D01G286300 chr5B 87.137 241 21 6 2599 2829 531601029 531601269 6.340000e-67 265.0
8 TraesCS4D01G286300 chr5B 92.500 40 2 1 2943 2981 61149449 61149410 4.150000e-04 56.5
9 TraesCS4D01G286300 chr5B 92.500 40 2 1 2943 2981 371899841 371899880 4.150000e-04 56.5
10 TraesCS4D01G286300 chr2D 85.833 240 26 5 2598 2830 466813842 466813604 6.380000e-62 248.0
11 TraesCS4D01G286300 chr2D 92.500 40 2 1 2943 2981 555104819 555104858 4.150000e-04 56.5
12 TraesCS4D01G286300 chr1A 85.484 248 23 10 2599 2837 429980927 429980684 2.290000e-61 246.0
13 TraesCS4D01G286300 chr1A 85.532 235 21 9 2606 2830 538787865 538788096 1.790000e-57 233.0
14 TraesCS4D01G286300 chr2B 85.232 237 28 7 2606 2837 747807521 747807287 1.380000e-58 237.0
15 TraesCS4D01G286300 chr2B 94.286 35 2 0 2947 2981 562870646 562870680 1.000000e-03 54.7
16 TraesCS4D01G286300 chr3B 86.026 229 21 9 2610 2830 482419805 482419580 4.970000e-58 235.0
17 TraesCS4D01G286300 chr2A 85.062 241 23 9 2598 2830 592859358 592859123 1.790000e-57 233.0
18 TraesCS4D01G286300 chr2A 87.302 63 5 2 2921 2981 13093857 13093796 5.330000e-08 69.4
19 TraesCS4D01G286300 chr7D 87.097 62 6 2 2921 2981 572170141 572170081 5.330000e-08 69.4
20 TraesCS4D01G286300 chr1D 100.000 34 0 0 2948 2981 307846416 307846449 2.480000e-06 63.9
21 TraesCS4D01G286300 chr3A 96.970 33 1 0 2949 2981 743381674 743381706 4.150000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G286300 chr4D 456689743 456692723 2980 True 5505.00 5505 100.0000 1 2981 1 chr4D.!!$R1 2980
1 TraesCS4D01G286300 chr4A 11272284 11275884 3600 True 1838.15 3581 92.2225 1 2570 2 chr4A.!!$R1 2569
2 TraesCS4D01G286300 chr4B 571057891 571060409 2518 False 3574.00 3574 92.3380 3 2529 1 chr4B.!!$F1 2526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 1068 0.109723 TGCAGAGGTTGGGGTTGTAC 59.890 55.0 0.0 0.0 0.0 2.90 F
48 1069 0.953960 GCAGAGGTTGGGGTTGTACG 60.954 60.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1467 2518 0.037326 TGAAGTAGAGCACGGCCTTG 60.037 55.0 4.51 4.51 0.00 3.61 R
2044 3109 0.571661 GAAAACACACACGCGTACGA 59.428 50.0 21.65 0.00 43.93 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 1067 1.072266 ATGCAGAGGTTGGGGTTGTA 58.928 50.000 0.00 0.00 0.00 2.41
47 1068 0.109723 TGCAGAGGTTGGGGTTGTAC 59.890 55.000 0.00 0.00 0.00 2.90
48 1069 0.953960 GCAGAGGTTGGGGTTGTACG 60.954 60.000 0.00 0.00 0.00 3.67
50 1071 1.134228 AGAGGTTGGGGTTGTACGTT 58.866 50.000 0.00 0.00 0.00 3.99
51 1072 2.037511 CAGAGGTTGGGGTTGTACGTTA 59.962 50.000 0.00 0.00 0.00 3.18
52 1073 2.908351 AGAGGTTGGGGTTGTACGTTAT 59.092 45.455 0.00 0.00 0.00 1.89
53 1074 3.055602 AGAGGTTGGGGTTGTACGTTATC 60.056 47.826 0.00 0.00 0.00 1.75
54 1075 2.001872 GGTTGGGGTTGTACGTTATCG 58.998 52.381 0.00 0.00 43.34 2.92
320 1343 1.336440 CAGGTGAACGGTGATGCAAAA 59.664 47.619 0.00 0.00 0.00 2.44
354 1377 4.219115 TGCAAGAAAATGGAAGGGTGTAA 58.781 39.130 0.00 0.00 0.00 2.41
398 1422 2.424601 CCACTGCCATAGTCAACATTGG 59.575 50.000 0.00 0.00 37.60 3.16
423 1447 6.812160 GTCCTACCAGTTGTATGTTTCACTAG 59.188 42.308 0.00 0.00 0.00 2.57
424 1448 6.495872 TCCTACCAGTTGTATGTTTCACTAGT 59.504 38.462 0.00 0.00 0.00 2.57
425 1449 7.670979 TCCTACCAGTTGTATGTTTCACTAGTA 59.329 37.037 0.00 0.00 0.00 1.82
426 1450 7.758528 CCTACCAGTTGTATGTTTCACTAGTAC 59.241 40.741 0.00 0.00 0.00 2.73
489 1513 4.807304 GTGCATCCATCCACAATTTTCATC 59.193 41.667 0.00 0.00 32.37 2.92
503 1527 9.793252 CACAATTTTCATCAGGTCCTAATTAAG 57.207 33.333 0.00 0.00 0.00 1.85
504 1528 9.753674 ACAATTTTCATCAGGTCCTAATTAAGA 57.246 29.630 0.00 0.00 0.00 2.10
559 1584 1.588674 AACAACTTGAACGGCGATGA 58.411 45.000 16.62 0.00 0.00 2.92
644 1669 5.078949 TGATTCATGAACTGGACCACAAAT 58.921 37.500 11.07 0.00 0.00 2.32
660 1686 2.936498 ACAAATATCCGAACTTGGCTCG 59.064 45.455 0.00 0.00 36.06 5.03
670 1696 2.496899 ACTTGGCTCGAAATGTCCAT 57.503 45.000 0.00 0.00 0.00 3.41
680 1706 5.414789 TCGAAATGTCCATAGTCCAAAGA 57.585 39.130 0.00 0.00 0.00 2.52
725 1752 6.687604 ACTTTCATAAAAGGATGTTTTCGGG 58.312 36.000 0.00 0.00 45.15 5.14
726 1753 5.652994 TTCATAAAAGGATGTTTTCGGGG 57.347 39.130 0.00 0.00 0.00 5.73
738 1766 6.999871 GGATGTTTTCGGGGGAAAATACTATA 59.000 38.462 5.42 0.00 36.58 1.31
805 1833 5.629133 GCCCACTAAATCTCACCACTTATCA 60.629 44.000 0.00 0.00 0.00 2.15
827 1855 1.136565 CCCGCGTGCTGGTTTTATG 59.863 57.895 4.92 0.00 0.00 1.90
858 1886 5.876357 TGCCATATGTAAGATCCTAAACCC 58.124 41.667 1.24 0.00 0.00 4.11
964 2009 2.159240 TCACACACAGTCACACACTCTC 60.159 50.000 0.00 0.00 30.26 3.20
1353 2398 1.204941 CACTCCTTCTCGTTCCCGATT 59.795 52.381 0.00 0.00 43.27 3.34
1557 2608 1.447643 CATCCTCAAGGGCTACGGG 59.552 63.158 0.00 0.00 35.41 5.28
1611 2662 3.179939 GGTTTCCGCGACGAGCTC 61.180 66.667 8.23 2.73 45.59 4.09
1887 2944 2.744768 AAGAGGACGACGAGGACGGT 62.745 60.000 0.00 0.00 44.46 4.83
1898 2955 4.078516 GGACGGTGAAGGGACGGG 62.079 72.222 0.00 0.00 0.00 5.28
1989 3046 2.049156 TGCTCCTGAGACGTTGCG 60.049 61.111 0.00 0.00 0.00 4.85
2031 3096 1.736681 GTGCTCAGCTCCTGTGATTTC 59.263 52.381 0.00 0.00 32.61 2.17
2044 3109 4.201980 CCTGTGATTTCGTGAATGCATGAT 60.202 41.667 0.00 0.00 39.64 2.45
2072 3137 0.231024 TGTGTGTTTTCGCGTGATCG 59.769 50.000 5.77 0.00 40.37 3.69
2084 3149 4.187810 TGATCGACGGCGCGTGAT 62.188 61.111 5.31 14.46 41.37 3.06
2120 3185 3.739810 CCTCATGTATGTCTGCGATTCAG 59.260 47.826 0.00 0.00 44.21 3.02
2123 3188 3.866883 TGTATGTCTGCGATTCAGTGA 57.133 42.857 0.00 0.00 43.32 3.41
2126 3191 2.070262 TGTCTGCGATTCAGTGAGTG 57.930 50.000 0.00 0.00 43.32 3.51
2130 3195 0.247460 TGCGATTCAGTGAGTGGAGG 59.753 55.000 1.72 0.00 0.00 4.30
2190 3262 7.597369 CACTGTTCATGATGTGATTTGAATTGT 59.403 33.333 14.85 0.00 36.54 2.71
2305 3386 7.758820 AGCTAGTTCTAGGCTCTATAGGATA 57.241 40.000 8.63 0.00 0.00 2.59
2310 3391 8.344939 AGTTCTAGGCTCTATAGGATATAGCT 57.655 38.462 9.50 0.00 33.67 3.32
2390 3475 0.931005 CCGCATCGTAGCTCCTTTTC 59.069 55.000 0.00 0.00 0.00 2.29
2404 3489 7.745620 AGCTCCTTTTCGAAGAAAAGAAATA 57.254 32.000 27.17 13.89 45.90 1.40
2421 3506 1.453155 ATACAAAGCGAGCCACAAGG 58.547 50.000 0.00 0.00 38.23 3.61
2461 3546 1.341080 CAGGGTGCTCCAACCAAAAT 58.659 50.000 7.20 0.00 45.07 1.82
2473 3558 6.198237 TCCAACCAAAATTTTCCAATGGAT 57.802 33.333 1.39 0.00 35.16 3.41
2505 3591 3.577415 ACTATCCATAGCCCCGTAGTTTC 59.423 47.826 0.00 0.00 33.68 2.78
2538 3624 4.864334 CCAGCAGGGATGCGGACC 62.864 72.222 1.86 0.00 40.01 4.46
2544 3630 2.124695 GGGATGCGGACCCAAGTC 60.125 66.667 9.19 0.00 46.05 3.01
2561 3647 4.124238 CAAGTCTAGTGGAAACGGACAAA 58.876 43.478 0.00 0.00 0.00 2.83
2566 3652 2.730382 AGTGGAAACGGACAAACCTTT 58.270 42.857 0.00 0.00 36.31 3.11
2592 3678 6.947903 TTTTAACTTTGGAAACGGACAAAC 57.052 33.333 0.00 0.00 33.45 2.93
2593 3679 3.513680 AACTTTGGAAACGGACAAACC 57.486 42.857 0.00 0.00 33.45 3.27
2594 3680 2.730382 ACTTTGGAAACGGACAAACCT 58.270 42.857 0.00 0.00 33.45 3.50
2595 3681 3.093814 ACTTTGGAAACGGACAAACCTT 58.906 40.909 0.00 0.00 33.45 3.50
2596 3682 3.119280 ACTTTGGAAACGGACAAACCTTG 60.119 43.478 0.00 0.00 33.45 3.61
2598 3684 2.448453 TGGAAACGGACAAACCTTGTT 58.552 42.857 0.00 0.00 45.52 2.83
2599 3685 2.826725 TGGAAACGGACAAACCTTGTTT 59.173 40.909 0.00 0.00 45.52 2.83
2600 3686 3.183754 GGAAACGGACAAACCTTGTTTG 58.816 45.455 15.97 15.97 45.52 2.93
2601 3687 2.951457 AACGGACAAACCTTGTTTGG 57.049 45.000 20.19 8.24 45.52 3.28
2602 3688 1.107945 ACGGACAAACCTTGTTTGGG 58.892 50.000 20.19 12.75 45.52 4.12
2603 3689 0.387565 CGGACAAACCTTGTTTGGGG 59.612 55.000 20.19 8.06 45.52 4.96
2604 3690 1.491668 GGACAAACCTTGTTTGGGGT 58.508 50.000 20.19 3.46 45.52 4.95
2605 3691 1.834896 GGACAAACCTTGTTTGGGGTT 59.165 47.619 20.19 3.15 45.52 4.11
2606 3692 2.159014 GGACAAACCTTGTTTGGGGTTC 60.159 50.000 20.19 10.60 45.52 3.62
2607 3693 1.834896 ACAAACCTTGTTTGGGGTTCC 59.165 47.619 20.19 0.00 44.02 3.62
2608 3694 1.116308 AAACCTTGTTTGGGGTTCCG 58.884 50.000 0.00 0.00 44.02 4.30
2609 3695 0.757561 AACCTTGTTTGGGGTTCCGG 60.758 55.000 0.00 0.00 41.38 5.14
2610 3696 1.152631 CCTTGTTTGGGGTTCCGGT 60.153 57.895 0.00 0.00 35.24 5.28
2611 3697 1.460273 CCTTGTTTGGGGTTCCGGTG 61.460 60.000 0.00 0.00 35.24 4.94
2612 3698 2.082629 CTTGTTTGGGGTTCCGGTGC 62.083 60.000 0.00 0.00 35.24 5.01
2613 3699 2.203437 GTTTGGGGTTCCGGTGCT 60.203 61.111 0.00 0.00 35.24 4.40
2614 3700 2.114411 TTTGGGGTTCCGGTGCTC 59.886 61.111 0.00 0.00 35.24 4.26
2615 3701 3.501040 TTTGGGGTTCCGGTGCTCC 62.501 63.158 0.00 5.58 35.24 4.70
2617 3703 3.961414 GGGGTTCCGGTGCTCCAA 61.961 66.667 11.19 0.00 0.00 3.53
2618 3704 2.671963 GGGTTCCGGTGCTCCAAC 60.672 66.667 0.00 2.71 0.00 3.77
2619 3705 2.430367 GGTTCCGGTGCTCCAACT 59.570 61.111 0.00 0.00 0.00 3.16
2620 3706 1.228154 GGTTCCGGTGCTCCAACTT 60.228 57.895 0.00 0.00 0.00 2.66
2621 3707 0.035739 GGTTCCGGTGCTCCAACTTA 59.964 55.000 0.00 0.00 0.00 2.24
2622 3708 1.543871 GGTTCCGGTGCTCCAACTTAA 60.544 52.381 0.00 0.00 0.00 1.85
2623 3709 2.223745 GTTCCGGTGCTCCAACTTAAA 58.776 47.619 0.00 0.00 0.00 1.52
2624 3710 2.619646 GTTCCGGTGCTCCAACTTAAAA 59.380 45.455 0.00 0.00 0.00 1.52
2625 3711 2.500229 TCCGGTGCTCCAACTTAAAAG 58.500 47.619 0.00 0.00 0.00 2.27
2626 3712 2.105134 TCCGGTGCTCCAACTTAAAAGA 59.895 45.455 0.00 0.00 0.00 2.52
2627 3713 2.882137 CCGGTGCTCCAACTTAAAAGAA 59.118 45.455 5.52 0.00 0.00 2.52
2628 3714 3.316868 CCGGTGCTCCAACTTAAAAGAAA 59.683 43.478 5.52 0.00 0.00 2.52
2629 3715 4.287720 CGGTGCTCCAACTTAAAAGAAAC 58.712 43.478 5.52 0.00 0.00 2.78
2630 3716 4.201970 CGGTGCTCCAACTTAAAAGAAACA 60.202 41.667 5.52 0.00 0.00 2.83
2631 3717 5.507315 CGGTGCTCCAACTTAAAAGAAACAT 60.507 40.000 5.52 0.00 0.00 2.71
2632 3718 6.280643 GGTGCTCCAACTTAAAAGAAACATT 58.719 36.000 0.00 0.00 0.00 2.71
2633 3719 6.420903 GGTGCTCCAACTTAAAAGAAACATTC 59.579 38.462 0.00 0.00 0.00 2.67
2634 3720 6.978080 GTGCTCCAACTTAAAAGAAACATTCA 59.022 34.615 0.00 0.00 0.00 2.57
2635 3721 7.653311 GTGCTCCAACTTAAAAGAAACATTCAT 59.347 33.333 0.00 0.00 0.00 2.57
2636 3722 8.855110 TGCTCCAACTTAAAAGAAACATTCATA 58.145 29.630 0.00 0.00 0.00 2.15
2637 3723 9.691362 GCTCCAACTTAAAAGAAACATTCATAA 57.309 29.630 0.00 0.00 0.00 1.90
2690 3776 8.094798 TGAATGTTCACAAGGAATGTAACTAC 57.905 34.615 0.00 0.00 41.46 2.73
2691 3777 7.717436 TGAATGTTCACAAGGAATGTAACTACA 59.283 33.333 0.00 0.00 41.46 2.74
2692 3778 8.458573 AATGTTCACAAGGAATGTAACTACAA 57.541 30.769 0.00 0.00 41.46 2.41
2693 3779 7.254227 TGTTCACAAGGAATGTAACTACAAC 57.746 36.000 0.00 0.00 41.46 3.32
2694 3780 6.261381 TGTTCACAAGGAATGTAACTACAACC 59.739 38.462 0.00 1.77 41.46 3.77
2695 3781 5.310451 TCACAAGGAATGTAACTACAACCC 58.690 41.667 10.70 7.44 41.46 4.11
2696 3782 4.457949 CACAAGGAATGTAACTACAACCCC 59.542 45.833 10.70 5.61 41.46 4.95
2697 3783 4.352893 ACAAGGAATGTAACTACAACCCCT 59.647 41.667 10.70 7.24 41.63 4.79
2698 3784 5.548836 ACAAGGAATGTAACTACAACCCCTA 59.451 40.000 10.70 0.00 41.63 3.53
2699 3785 6.044637 ACAAGGAATGTAACTACAACCCCTAA 59.955 38.462 10.70 0.00 41.63 2.69
2700 3786 6.707273 AGGAATGTAACTACAACCCCTAAA 57.293 37.500 10.70 0.00 39.99 1.85
2701 3787 7.093965 AGGAATGTAACTACAACCCCTAAAA 57.906 36.000 10.70 0.00 39.99 1.52
2702 3788 7.528675 AGGAATGTAACTACAACCCCTAAAAA 58.471 34.615 10.70 0.00 39.99 1.94
2703 3789 8.174757 AGGAATGTAACTACAACCCCTAAAAAT 58.825 33.333 10.70 0.00 39.99 1.82
2704 3790 8.809066 GGAATGTAACTACAACCCCTAAAAATT 58.191 33.333 0.00 0.00 39.99 1.82
2705 3791 9.850628 GAATGTAACTACAACCCCTAAAAATTC 57.149 33.333 0.00 0.00 39.99 2.17
2706 3792 8.943594 ATGTAACTACAACCCCTAAAAATTCA 57.056 30.769 0.00 0.00 39.99 2.57
2707 3793 8.398878 TGTAACTACAACCCCTAAAAATTCAG 57.601 34.615 0.00 0.00 32.40 3.02
2708 3794 6.911250 AACTACAACCCCTAAAAATTCAGG 57.089 37.500 0.00 0.00 0.00 3.86
2709 3795 5.960704 ACTACAACCCCTAAAAATTCAGGT 58.039 37.500 1.35 0.00 0.00 4.00
2710 3796 6.008331 ACTACAACCCCTAAAAATTCAGGTC 58.992 40.000 0.00 0.00 0.00 3.85
2711 3797 4.157246 ACAACCCCTAAAAATTCAGGTCC 58.843 43.478 0.00 0.00 0.00 4.46
2712 3798 3.081710 ACCCCTAAAAATTCAGGTCCG 57.918 47.619 1.35 0.00 0.00 4.79
2713 3799 2.645797 ACCCCTAAAAATTCAGGTCCGA 59.354 45.455 0.00 0.00 0.00 4.55
2714 3800 3.074836 ACCCCTAAAAATTCAGGTCCGAA 59.925 43.478 0.00 0.00 0.00 4.30
2715 3801 3.442625 CCCCTAAAAATTCAGGTCCGAAC 59.557 47.826 0.00 0.00 0.00 3.95
2716 3802 4.332828 CCCTAAAAATTCAGGTCCGAACT 58.667 43.478 0.00 0.00 0.00 3.01
2717 3803 4.395231 CCCTAAAAATTCAGGTCCGAACTC 59.605 45.833 0.00 0.00 0.00 3.01
2718 3804 4.092968 CCTAAAAATTCAGGTCCGAACTCG 59.907 45.833 0.00 0.00 39.44 4.18
2719 3805 3.396260 AAAATTCAGGTCCGAACTCGA 57.604 42.857 0.00 0.00 43.02 4.04
2720 3806 3.396260 AAATTCAGGTCCGAACTCGAA 57.604 42.857 0.00 2.18 43.02 3.71
2721 3807 3.396260 AATTCAGGTCCGAACTCGAAA 57.604 42.857 0.00 0.00 43.02 3.46
2722 3808 3.611766 ATTCAGGTCCGAACTCGAAAT 57.388 42.857 0.00 0.00 43.02 2.17
2723 3809 2.363788 TCAGGTCCGAACTCGAAATG 57.636 50.000 0.00 0.00 43.02 2.32
2724 3810 1.616865 TCAGGTCCGAACTCGAAATGT 59.383 47.619 0.00 0.00 43.02 2.71
2725 3811 1.726791 CAGGTCCGAACTCGAAATGTG 59.273 52.381 0.00 0.00 43.02 3.21
2726 3812 0.442699 GGTCCGAACTCGAAATGTGC 59.557 55.000 0.00 0.00 43.02 4.57
2727 3813 1.144969 GTCCGAACTCGAAATGTGCA 58.855 50.000 0.00 0.00 43.02 4.57
2728 3814 1.136336 GTCCGAACTCGAAATGTGCAC 60.136 52.381 10.75 10.75 43.02 4.57
2729 3815 1.148310 CCGAACTCGAAATGTGCACT 58.852 50.000 19.41 0.00 43.02 4.40
2730 3816 1.136252 CCGAACTCGAAATGTGCACTG 60.136 52.381 19.41 2.96 43.02 3.66
2731 3817 1.722751 CGAACTCGAAATGTGCACTGC 60.723 52.381 19.41 3.69 43.02 4.40
2732 3818 0.235665 AACTCGAAATGTGCACTGCG 59.764 50.000 19.41 15.31 0.00 5.18
2733 3819 0.599991 ACTCGAAATGTGCACTGCGA 60.600 50.000 19.41 18.37 0.00 5.10
2734 3820 0.512518 CTCGAAATGTGCACTGCGAA 59.487 50.000 19.41 0.00 0.00 4.70
2735 3821 0.940833 TCGAAATGTGCACTGCGAAA 59.059 45.000 19.41 0.00 0.00 3.46
2736 3822 1.044725 CGAAATGTGCACTGCGAAAC 58.955 50.000 19.41 2.53 0.00 2.78
2737 3823 1.596709 CGAAATGTGCACTGCGAAACA 60.597 47.619 19.41 0.00 0.00 2.83
2738 3824 2.458951 GAAATGTGCACTGCGAAACAA 58.541 42.857 19.41 0.00 0.00 2.83
2739 3825 2.575694 AATGTGCACTGCGAAACAAA 57.424 40.000 19.41 0.00 0.00 2.83
2740 3826 2.575694 ATGTGCACTGCGAAACAAAA 57.424 40.000 19.41 0.00 0.00 2.44
2741 3827 2.354109 TGTGCACTGCGAAACAAAAA 57.646 40.000 19.41 0.00 0.00 1.94
2742 3828 2.886081 TGTGCACTGCGAAACAAAAAT 58.114 38.095 19.41 0.00 0.00 1.82
2743 3829 2.602211 TGTGCACTGCGAAACAAAAATG 59.398 40.909 19.41 0.00 0.00 2.32
2744 3830 2.602660 GTGCACTGCGAAACAAAAATGT 59.397 40.909 10.32 0.00 0.00 2.71
2745 3831 2.602211 TGCACTGCGAAACAAAAATGTG 59.398 40.909 0.00 0.00 0.00 3.21
2746 3832 2.857152 GCACTGCGAAACAAAAATGTGA 59.143 40.909 0.00 0.00 0.00 3.58
2747 3833 3.305629 GCACTGCGAAACAAAAATGTGAA 59.694 39.130 0.00 0.00 0.00 3.18
2748 3834 4.201666 GCACTGCGAAACAAAAATGTGAAA 60.202 37.500 0.00 0.00 0.00 2.69
2749 3835 5.502220 GCACTGCGAAACAAAAATGTGAAAT 60.502 36.000 0.00 0.00 0.00 2.17
2750 3836 6.122125 CACTGCGAAACAAAAATGTGAAATC 58.878 36.000 0.00 0.00 0.00 2.17
2751 3837 5.234116 ACTGCGAAACAAAAATGTGAAATCC 59.766 36.000 0.00 0.00 0.00 3.01
2752 3838 4.208047 TGCGAAACAAAAATGTGAAATCCG 59.792 37.500 0.00 0.00 0.00 4.18
2753 3839 4.375908 GCGAAACAAAAATGTGAAATCCGG 60.376 41.667 0.00 0.00 0.00 5.14
2754 3840 4.375908 CGAAACAAAAATGTGAAATCCGGC 60.376 41.667 0.00 0.00 0.00 6.13
2755 3841 3.742433 ACAAAAATGTGAAATCCGGCA 57.258 38.095 0.00 0.00 0.00 5.69
2756 3842 4.270245 ACAAAAATGTGAAATCCGGCAT 57.730 36.364 0.00 0.00 0.00 4.40
2757 3843 3.995705 ACAAAAATGTGAAATCCGGCATG 59.004 39.130 0.00 0.00 0.00 4.06
2758 3844 4.244066 CAAAAATGTGAAATCCGGCATGA 58.756 39.130 0.00 0.00 0.00 3.07
2759 3845 4.533919 AAAATGTGAAATCCGGCATGAA 57.466 36.364 0.00 0.00 0.00 2.57
2760 3846 4.741321 AAATGTGAAATCCGGCATGAAT 57.259 36.364 0.00 0.00 0.00 2.57
2761 3847 5.850557 AAATGTGAAATCCGGCATGAATA 57.149 34.783 0.00 0.00 0.00 1.75
2762 3848 5.443185 AATGTGAAATCCGGCATGAATAG 57.557 39.130 0.00 0.00 0.00 1.73
2763 3849 3.884895 TGTGAAATCCGGCATGAATAGT 58.115 40.909 0.00 0.00 0.00 2.12
2764 3850 3.627123 TGTGAAATCCGGCATGAATAGTG 59.373 43.478 0.00 0.00 0.00 2.74
2765 3851 3.627577 GTGAAATCCGGCATGAATAGTGT 59.372 43.478 0.00 0.00 0.00 3.55
2766 3852 4.814234 GTGAAATCCGGCATGAATAGTGTA 59.186 41.667 0.00 0.00 0.00 2.90
2767 3853 5.470098 GTGAAATCCGGCATGAATAGTGTAT 59.530 40.000 0.00 0.00 0.00 2.29
2768 3854 6.649141 GTGAAATCCGGCATGAATAGTGTATA 59.351 38.462 0.00 0.00 0.00 1.47
2769 3855 7.172532 GTGAAATCCGGCATGAATAGTGTATAA 59.827 37.037 0.00 0.00 0.00 0.98
2770 3856 7.717436 TGAAATCCGGCATGAATAGTGTATAAA 59.283 33.333 0.00 0.00 0.00 1.40
2771 3857 7.672983 AATCCGGCATGAATAGTGTATAAAG 57.327 36.000 0.00 0.00 0.00 1.85
2772 3858 6.413783 TCCGGCATGAATAGTGTATAAAGA 57.586 37.500 0.00 0.00 0.00 2.52
2773 3859 6.220930 TCCGGCATGAATAGTGTATAAAGAC 58.779 40.000 0.00 0.00 0.00 3.01
2774 3860 5.989168 CCGGCATGAATAGTGTATAAAGACA 59.011 40.000 0.00 0.00 0.00 3.41
2775 3861 6.481976 CCGGCATGAATAGTGTATAAAGACAA 59.518 38.462 0.00 0.00 0.00 3.18
2776 3862 7.011950 CCGGCATGAATAGTGTATAAAGACAAA 59.988 37.037 0.00 0.00 0.00 2.83
2777 3863 8.394877 CGGCATGAATAGTGTATAAAGACAAAA 58.605 33.333 0.00 0.00 0.00 2.44
2794 3880 9.683069 AAAGACAAAATCAACATTGACACTATC 57.317 29.630 0.00 0.00 40.49 2.08
2795 3881 7.820648 AGACAAAATCAACATTGACACTATCC 58.179 34.615 0.00 0.00 40.49 2.59
2796 3882 7.448161 AGACAAAATCAACATTGACACTATCCA 59.552 33.333 0.00 0.00 40.49 3.41
2797 3883 7.370383 ACAAAATCAACATTGACACTATCCAC 58.630 34.615 0.00 0.00 40.49 4.02
2798 3884 5.801350 AATCAACATTGACACTATCCACG 57.199 39.130 0.00 0.00 40.49 4.94
2799 3885 4.265904 TCAACATTGACACTATCCACGT 57.734 40.909 0.00 0.00 31.01 4.49
2800 3886 4.242475 TCAACATTGACACTATCCACGTC 58.758 43.478 0.00 0.00 31.01 4.34
2801 3887 4.021456 TCAACATTGACACTATCCACGTCT 60.021 41.667 0.00 0.00 31.01 4.18
2802 3888 3.849911 ACATTGACACTATCCACGTCTG 58.150 45.455 0.00 0.00 0.00 3.51
2803 3889 3.190079 CATTGACACTATCCACGTCTGG 58.810 50.000 0.00 0.00 39.23 3.86
2813 3899 3.417069 TCCACGTCTGGATTTCACATT 57.583 42.857 0.00 0.00 42.15 2.71
2814 3900 3.750371 TCCACGTCTGGATTTCACATTT 58.250 40.909 0.00 0.00 42.15 2.32
2815 3901 3.751175 TCCACGTCTGGATTTCACATTTC 59.249 43.478 0.00 0.00 42.15 2.17
2816 3902 3.753272 CCACGTCTGGATTTCACATTTCT 59.247 43.478 0.00 0.00 40.55 2.52
2817 3903 4.378770 CCACGTCTGGATTTCACATTTCTG 60.379 45.833 0.00 0.00 40.55 3.02
2818 3904 4.214119 CACGTCTGGATTTCACATTTCTGT 59.786 41.667 0.00 0.00 35.44 3.41
2819 3905 4.821805 ACGTCTGGATTTCACATTTCTGTT 59.178 37.500 0.00 0.00 31.62 3.16
2820 3906 5.299279 ACGTCTGGATTTCACATTTCTGTTT 59.701 36.000 0.00 0.00 31.62 2.83
2821 3907 5.853282 CGTCTGGATTTCACATTTCTGTTTC 59.147 40.000 0.00 0.00 31.62 2.78
2822 3908 6.293626 CGTCTGGATTTCACATTTCTGTTTCT 60.294 38.462 0.00 0.00 31.62 2.52
2823 3909 7.080724 GTCTGGATTTCACATTTCTGTTTCTC 58.919 38.462 0.00 0.00 31.62 2.87
2824 3910 6.772233 TCTGGATTTCACATTTCTGTTTCTCA 59.228 34.615 0.00 0.00 31.62 3.27
2825 3911 7.285172 TCTGGATTTCACATTTCTGTTTCTCAA 59.715 33.333 0.00 0.00 31.62 3.02
2826 3912 7.954835 TGGATTTCACATTTCTGTTTCTCAAT 58.045 30.769 0.00 0.00 31.62 2.57
2827 3913 7.868922 TGGATTTCACATTTCTGTTTCTCAATG 59.131 33.333 0.00 0.00 31.62 2.82
2828 3914 7.869429 GGATTTCACATTTCTGTTTCTCAATGT 59.131 33.333 0.00 0.00 31.62 2.71
2829 3915 9.897744 GATTTCACATTTCTGTTTCTCAATGTA 57.102 29.630 0.00 0.00 31.62 2.29
2855 3941 5.765072 TTTGTTTTTAAACTTCGTGCACC 57.235 34.783 12.15 0.00 39.59 5.01
2856 3942 3.427243 TGTTTTTAAACTTCGTGCACCG 58.573 40.909 12.15 6.81 39.59 4.94
2857 3943 2.759538 TTTTAAACTTCGTGCACCGG 57.240 45.000 12.15 0.00 37.11 5.28
2858 3944 0.945813 TTTAAACTTCGTGCACCGGG 59.054 50.000 12.15 3.64 37.11 5.73
2859 3945 0.106335 TTAAACTTCGTGCACCGGGA 59.894 50.000 12.15 0.00 37.11 5.14
2860 3946 0.320073 TAAACTTCGTGCACCGGGAG 60.320 55.000 12.15 4.78 37.11 4.30
2861 3947 2.319890 AAACTTCGTGCACCGGGAGT 62.320 55.000 12.15 5.50 35.74 3.85
2862 3948 1.466025 AACTTCGTGCACCGGGAGTA 61.466 55.000 12.15 0.00 34.01 2.59
2863 3949 1.445582 CTTCGTGCACCGGGAGTAC 60.446 63.158 12.15 6.88 37.11 2.73
2864 3950 2.830704 CTTCGTGCACCGGGAGTACC 62.831 65.000 12.15 0.00 37.11 3.34
2876 3962 2.375173 GGAGTACCCAGTTGTAACCG 57.625 55.000 0.00 0.00 34.14 4.44
2877 3963 1.066645 GGAGTACCCAGTTGTAACCGG 60.067 57.143 0.00 0.00 34.14 5.28
2878 3964 1.620323 GAGTACCCAGTTGTAACCGGT 59.380 52.381 0.00 0.00 36.41 5.28
2879 3965 2.825532 GAGTACCCAGTTGTAACCGGTA 59.174 50.000 8.00 7.06 34.80 4.02
2880 3966 2.827921 AGTACCCAGTTGTAACCGGTAG 59.172 50.000 8.00 0.00 35.92 3.18
2881 3967 0.978907 ACCCAGTTGTAACCGGTAGG 59.021 55.000 8.00 1.25 45.13 3.18
2882 3968 0.392060 CCCAGTTGTAACCGGTAGGC 60.392 60.000 8.00 1.10 42.76 3.93
2883 3969 0.392060 CCAGTTGTAACCGGTAGGCC 60.392 60.000 8.00 0.00 42.76 5.19
2884 3970 0.322322 CAGTTGTAACCGGTAGGCCA 59.678 55.000 8.00 0.00 42.76 5.36
2885 3971 1.065709 CAGTTGTAACCGGTAGGCCAT 60.066 52.381 8.00 0.00 42.76 4.40
2886 3972 1.065709 AGTTGTAACCGGTAGGCCATG 60.066 52.381 8.00 0.00 42.76 3.66
2887 3973 1.065998 GTTGTAACCGGTAGGCCATGA 60.066 52.381 8.00 0.00 42.76 3.07
2888 3974 1.277579 TGTAACCGGTAGGCCATGAA 58.722 50.000 8.00 0.00 42.76 2.57
2889 3975 1.208535 TGTAACCGGTAGGCCATGAAG 59.791 52.381 8.00 0.00 42.76 3.02
2890 3976 0.179468 TAACCGGTAGGCCATGAAGC 59.821 55.000 8.00 0.00 42.76 3.86
2898 3984 3.869272 GCCATGAAGCCGCTCGTG 61.869 66.667 0.00 0.00 32.95 4.35
2899 3985 3.869272 CCATGAAGCCGCTCGTGC 61.869 66.667 0.00 0.00 31.98 5.34
2900 3986 3.120385 CATGAAGCCGCTCGTGCA 61.120 61.111 10.43 0.00 39.64 4.57
2901 3987 3.121030 ATGAAGCCGCTCGTGCAC 61.121 61.111 6.82 6.82 39.64 4.57
2902 3988 3.881952 ATGAAGCCGCTCGTGCACA 62.882 57.895 18.64 3.15 39.64 4.57
2903 3989 4.077188 GAAGCCGCTCGTGCACAC 62.077 66.667 18.64 4.47 39.64 3.82
2904 3990 4.609018 AAGCCGCTCGTGCACACT 62.609 61.111 18.64 0.67 39.64 3.55
2905 3991 4.609018 AGCCGCTCGTGCACACTT 62.609 61.111 18.64 0.00 39.64 3.16
2906 3992 2.709125 AAGCCGCTCGTGCACACTTA 62.709 55.000 18.64 0.00 39.64 2.24
2907 3993 3.011760 GCCGCTCGTGCACACTTAC 62.012 63.158 18.64 0.00 39.64 2.34
2908 3994 1.372997 CCGCTCGTGCACACTTACT 60.373 57.895 18.64 0.00 39.64 2.24
2909 3995 1.617755 CCGCTCGTGCACACTTACTG 61.618 60.000 18.64 0.00 39.64 2.74
2910 3996 0.663269 CGCTCGTGCACACTTACTGA 60.663 55.000 18.64 2.81 39.64 3.41
2911 3997 1.714794 GCTCGTGCACACTTACTGAT 58.285 50.000 18.64 0.00 39.41 2.90
2912 3998 2.069273 GCTCGTGCACACTTACTGATT 58.931 47.619 18.64 0.00 39.41 2.57
2913 3999 2.480419 GCTCGTGCACACTTACTGATTT 59.520 45.455 18.64 0.00 39.41 2.17
2914 4000 3.058914 GCTCGTGCACACTTACTGATTTT 60.059 43.478 18.64 0.00 39.41 1.82
2915 4001 4.151689 GCTCGTGCACACTTACTGATTTTA 59.848 41.667 18.64 0.00 39.41 1.52
2916 4002 5.163854 GCTCGTGCACACTTACTGATTTTAT 60.164 40.000 18.64 0.00 39.41 1.40
2917 4003 6.035650 GCTCGTGCACACTTACTGATTTTATA 59.964 38.462 18.64 0.00 39.41 0.98
2918 4004 7.285783 TCGTGCACACTTACTGATTTTATAC 57.714 36.000 18.64 0.00 0.00 1.47
2919 4005 6.311935 TCGTGCACACTTACTGATTTTATACC 59.688 38.462 18.64 0.00 0.00 2.73
2920 4006 6.312918 CGTGCACACTTACTGATTTTATACCT 59.687 38.462 18.64 0.00 0.00 3.08
2921 4007 7.148474 CGTGCACACTTACTGATTTTATACCTT 60.148 37.037 18.64 0.00 0.00 3.50
2922 4008 8.512138 GTGCACACTTACTGATTTTATACCTTT 58.488 33.333 13.17 0.00 0.00 3.11
2923 4009 9.727859 TGCACACTTACTGATTTTATACCTTTA 57.272 29.630 0.00 0.00 0.00 1.85
2958 4044 3.365535 CGGAAGCCCTGGTTTTGG 58.634 61.111 0.00 0.00 0.00 3.28
2967 4053 0.969149 CCTGGTTTTGGGAAGCTTCC 59.031 55.000 33.67 33.67 46.82 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 1045 2.094675 CAACCCCAACCTCTGCATTAG 58.905 52.381 0.00 0.00 0.00 1.73
26 1047 0.188342 ACAACCCCAACCTCTGCATT 59.812 50.000 0.00 0.00 0.00 3.56
87 1108 4.838423 AGCTAGCAAATTTGGGGTTTAACT 59.162 37.500 18.83 7.91 0.00 2.24
320 1343 6.268387 TCCATTTTCTTGCATTCCTTTCTTCT 59.732 34.615 0.00 0.00 0.00 2.85
354 1377 6.207810 TGGTTATGGCTTTCGAAGTTAAACAT 59.792 34.615 0.00 2.07 0.00 2.71
398 1422 5.548406 AGTGAAACATACAACTGGTAGGAC 58.452 41.667 0.00 0.00 41.43 3.85
447 1471 3.120304 GCACACTCTACTTTTTAAGCCCG 60.120 47.826 0.00 0.00 0.00 6.13
489 1513 6.739331 ATCTGGTCTCTTAATTAGGACCTG 57.261 41.667 22.83 22.03 41.29 4.00
503 1527 3.067833 GCGGGCTATTTTATCTGGTCTC 58.932 50.000 0.00 0.00 0.00 3.36
504 1528 2.438021 TGCGGGCTATTTTATCTGGTCT 59.562 45.455 0.00 0.00 0.00 3.85
505 1529 2.846193 TGCGGGCTATTTTATCTGGTC 58.154 47.619 0.00 0.00 0.00 4.02
506 1530 3.508845 ATGCGGGCTATTTTATCTGGT 57.491 42.857 0.00 0.00 0.00 4.00
536 1561 2.277969 TCGCCGTTCAAGTTGTTTGTA 58.722 42.857 2.11 0.00 38.01 2.41
541 1566 1.808411 ATCATCGCCGTTCAAGTTGT 58.192 45.000 2.11 0.00 0.00 3.32
559 1584 5.923733 TGTTTGAACTTTGTTGGTGGTAT 57.076 34.783 0.00 0.00 0.00 2.73
601 1626 8.491958 TGAATCATGAGTAGGTGTAGTAGAGTA 58.508 37.037 0.09 0.00 0.00 2.59
603 1628 7.809546 TGAATCATGAGTAGGTGTAGTAGAG 57.190 40.000 0.09 0.00 0.00 2.43
604 1629 7.998964 TCATGAATCATGAGTAGGTGTAGTAGA 59.001 37.037 20.85 0.00 44.60 2.59
605 1630 8.171164 TCATGAATCATGAGTAGGTGTAGTAG 57.829 38.462 20.85 0.00 44.60 2.57
621 1646 3.786368 TGTGGTCCAGTTCATGAATCA 57.214 42.857 12.12 0.00 0.00 2.57
644 1669 3.194861 CATTTCGAGCCAAGTTCGGATA 58.805 45.455 1.06 0.00 36.93 2.59
660 1686 6.173339 TCACTCTTTGGACTATGGACATTTC 58.827 40.000 0.00 0.00 0.00 2.17
670 1696 5.560722 TGGAACATTCACTCTTTGGACTA 57.439 39.130 0.00 0.00 0.00 2.59
680 1706 6.976934 AGTAATGGTTTTGGAACATTCACT 57.023 33.333 0.00 0.00 39.30 3.41
721 1748 7.251195 AGGATAACTATAGTATTTTCCCCCGA 58.749 38.462 5.65 0.00 0.00 5.14
723 1750 9.736414 GAAAGGATAACTATAGTATTTTCCCCC 57.264 37.037 5.65 0.21 0.00 5.40
805 1833 2.748058 AAAACCAGCACGCGGGAGAT 62.748 55.000 15.48 0.00 35.27 2.75
827 1855 1.895131 CTTACATATGGCATTGGGGGC 59.105 52.381 4.78 0.00 0.00 5.80
858 1886 4.065789 GGACGCTAATCTTTAGGGATTGG 58.934 47.826 15.59 0.00 36.69 3.16
964 2009 1.586028 CAAATGGGCAACGTGAGGG 59.414 57.895 0.00 0.00 37.60 4.30
1467 2518 0.037326 TGAAGTAGAGCACGGCCTTG 60.037 55.000 4.51 4.51 0.00 3.61
1596 2647 3.676605 TGGAGCTCGTCGCGGAAA 61.677 61.111 6.13 0.00 45.59 3.13
1911 2968 4.681978 GTGCAGCGACGGAACCCT 62.682 66.667 0.00 0.00 0.00 4.34
1989 3046 3.328505 CACATCCAAGTGGCAAAATTCC 58.671 45.455 0.00 0.00 35.88 3.01
2031 3096 1.395944 GCGTACGATCATGCATTCACG 60.396 52.381 21.65 5.53 0.00 4.35
2044 3109 0.571661 GAAAACACACACGCGTACGA 59.428 50.000 21.65 0.00 43.93 3.43
2094 3159 4.200838 TCGCAGACATACATGAGGAAAA 57.799 40.909 0.00 0.00 0.00 2.29
2126 3191 1.078426 ATGCAGCGTTGGTACCTCC 60.078 57.895 14.36 2.25 0.00 4.30
2305 3386 7.521748 CGCCTACACTACACTATGTTAAGCTAT 60.522 40.741 0.00 0.00 0.00 2.97
2310 3391 4.675510 GCGCCTACACTACACTATGTTAA 58.324 43.478 0.00 0.00 0.00 2.01
2343 3427 3.458189 CTTTGAACAGAGACGACCACTT 58.542 45.455 0.00 0.00 0.00 3.16
2390 3475 5.281609 GCTCGCTTTGTATTTCTTTTCTTCG 59.718 40.000 0.00 0.00 0.00 3.79
2404 3489 1.152963 ACCTTGTGGCTCGCTTTGT 60.153 52.632 0.00 0.00 36.63 2.83
2421 3506 3.068024 TGTTTTGCTCCAATTGTCCTGAC 59.932 43.478 4.43 0.00 0.00 3.51
2473 3558 7.092264 ACGGGGCTATGGATAGTATACTACTAA 60.092 40.741 14.82 4.01 43.82 2.24
2484 3569 3.833070 AGAAACTACGGGGCTATGGATAG 59.167 47.826 0.00 0.00 0.00 2.08
2485 3570 3.853207 AGAAACTACGGGGCTATGGATA 58.147 45.455 0.00 0.00 0.00 2.59
2486 3571 2.690840 AGAAACTACGGGGCTATGGAT 58.309 47.619 0.00 0.00 0.00 3.41
2487 3572 2.170012 AGAAACTACGGGGCTATGGA 57.830 50.000 0.00 0.00 0.00 3.41
2488 3573 3.228453 TCTAGAAACTACGGGGCTATGG 58.772 50.000 0.00 0.00 0.00 2.74
2505 3591 5.179533 CCTGCTGGATGATGATTGATCTAG 58.820 45.833 2.92 0.00 34.57 2.43
2538 3624 2.036733 TGTCCGTTTCCACTAGACTTGG 59.963 50.000 0.00 0.00 35.18 3.61
2544 3630 3.121738 AGGTTTGTCCGTTTCCACTAG 57.878 47.619 0.00 0.00 41.99 2.57
2570 3656 5.185442 AGGTTTGTCCGTTTCCAAAGTTAAA 59.815 36.000 0.00 0.00 41.99 1.52
2571 3657 4.705991 AGGTTTGTCCGTTTCCAAAGTTAA 59.294 37.500 0.00 0.00 41.99 2.01
2572 3658 4.271661 AGGTTTGTCCGTTTCCAAAGTTA 58.728 39.130 0.00 0.00 41.99 2.24
2573 3659 3.093814 AGGTTTGTCCGTTTCCAAAGTT 58.906 40.909 0.00 0.00 41.99 2.66
2574 3660 2.730382 AGGTTTGTCCGTTTCCAAAGT 58.270 42.857 0.00 0.00 41.99 2.66
2575 3661 3.119280 ACAAGGTTTGTCCGTTTCCAAAG 60.119 43.478 0.00 0.00 40.56 2.77
2576 3662 2.826725 ACAAGGTTTGTCCGTTTCCAAA 59.173 40.909 0.00 0.00 40.56 3.28
2577 3663 2.448453 ACAAGGTTTGTCCGTTTCCAA 58.552 42.857 0.00 0.00 40.56 3.53
2578 3664 2.131776 ACAAGGTTTGTCCGTTTCCA 57.868 45.000 0.00 0.00 40.56 3.53
2579 3665 3.183754 CAAACAAGGTTTGTCCGTTTCC 58.816 45.455 12.43 0.00 44.59 3.13
2580 3666 3.183754 CCAAACAAGGTTTGTCCGTTTC 58.816 45.455 17.58 0.00 44.59 2.78
2581 3667 2.093921 CCCAAACAAGGTTTGTCCGTTT 60.094 45.455 17.58 0.00 44.59 3.60
2582 3668 1.478916 CCCAAACAAGGTTTGTCCGTT 59.521 47.619 17.58 0.00 44.59 4.44
2583 3669 1.107945 CCCAAACAAGGTTTGTCCGT 58.892 50.000 17.58 0.00 44.59 4.69
2584 3670 0.387565 CCCCAAACAAGGTTTGTCCG 59.612 55.000 17.58 5.64 44.59 4.79
2585 3671 1.491668 ACCCCAAACAAGGTTTGTCC 58.508 50.000 17.58 0.00 44.59 4.02
2586 3672 2.159014 GGAACCCCAAACAAGGTTTGTC 60.159 50.000 17.58 10.07 46.38 3.18
2587 3673 1.834896 GGAACCCCAAACAAGGTTTGT 59.165 47.619 17.58 0.84 46.38 2.83
2588 3674 1.202475 CGGAACCCCAAACAAGGTTTG 60.202 52.381 13.43 13.43 46.38 2.93
2589 3675 1.116308 CGGAACCCCAAACAAGGTTT 58.884 50.000 0.00 0.00 46.38 3.27
2591 3677 1.152631 CCGGAACCCCAAACAAGGT 60.153 57.895 0.00 0.00 38.27 3.50
2592 3678 1.152631 ACCGGAACCCCAAACAAGG 60.153 57.895 9.46 0.00 0.00 3.61
2593 3679 2.037871 CACCGGAACCCCAAACAAG 58.962 57.895 9.46 0.00 0.00 3.16
2594 3680 2.128507 GCACCGGAACCCCAAACAA 61.129 57.895 9.46 0.00 0.00 2.83
2595 3681 2.519780 GCACCGGAACCCCAAACA 60.520 61.111 9.46 0.00 0.00 2.83
2596 3682 2.203437 AGCACCGGAACCCCAAAC 60.203 61.111 9.46 0.00 0.00 2.93
2597 3683 2.114411 GAGCACCGGAACCCCAAA 59.886 61.111 9.46 0.00 0.00 3.28
2598 3684 3.961414 GGAGCACCGGAACCCCAA 61.961 66.667 9.46 0.00 0.00 4.12
2600 3686 3.961414 TTGGAGCACCGGAACCCC 61.961 66.667 9.46 4.45 39.42 4.95
2601 3687 2.671963 GTTGGAGCACCGGAACCC 60.672 66.667 9.46 4.03 39.42 4.11
2602 3688 0.035739 TAAGTTGGAGCACCGGAACC 59.964 55.000 9.46 6.23 39.42 3.62
2603 3689 1.886886 TTAAGTTGGAGCACCGGAAC 58.113 50.000 9.46 0.00 39.42 3.62
2604 3690 2.642154 TTTAAGTTGGAGCACCGGAA 57.358 45.000 9.46 0.00 39.42 4.30
2605 3691 2.105134 TCTTTTAAGTTGGAGCACCGGA 59.895 45.455 9.46 0.00 39.42 5.14
2606 3692 2.500229 TCTTTTAAGTTGGAGCACCGG 58.500 47.619 0.00 0.00 39.42 5.28
2607 3693 4.201970 TGTTTCTTTTAAGTTGGAGCACCG 60.202 41.667 0.00 0.00 39.42 4.94
2608 3694 5.257082 TGTTTCTTTTAAGTTGGAGCACC 57.743 39.130 0.00 0.00 0.00 5.01
2609 3695 6.978080 TGAATGTTTCTTTTAAGTTGGAGCAC 59.022 34.615 0.00 0.00 0.00 4.40
2610 3696 7.106439 TGAATGTTTCTTTTAAGTTGGAGCA 57.894 32.000 0.00 0.00 0.00 4.26
2611 3697 9.691362 TTATGAATGTTTCTTTTAAGTTGGAGC 57.309 29.630 0.00 0.00 0.00 4.70
2665 3751 7.717436 TGTAGTTACATTCCTTGTGAACATTCA 59.283 33.333 0.00 0.00 39.48 2.57
2666 3752 8.094798 TGTAGTTACATTCCTTGTGAACATTC 57.905 34.615 0.00 0.00 39.48 2.67
2667 3753 8.349983 GTTGTAGTTACATTCCTTGTGAACATT 58.650 33.333 0.00 0.00 39.48 2.71
2668 3754 7.040686 GGTTGTAGTTACATTCCTTGTGAACAT 60.041 37.037 0.00 0.00 39.48 2.71
2669 3755 6.261381 GGTTGTAGTTACATTCCTTGTGAACA 59.739 38.462 0.00 0.00 39.48 3.18
2670 3756 6.293790 GGGTTGTAGTTACATTCCTTGTGAAC 60.294 42.308 11.18 0.00 39.48 3.18
2671 3757 5.766174 GGGTTGTAGTTACATTCCTTGTGAA 59.234 40.000 11.18 0.00 39.48 3.18
2672 3758 5.310451 GGGTTGTAGTTACATTCCTTGTGA 58.690 41.667 11.18 0.00 39.48 3.58
2673 3759 4.457949 GGGGTTGTAGTTACATTCCTTGTG 59.542 45.833 11.18 0.00 39.48 3.33
2674 3760 4.352893 AGGGGTTGTAGTTACATTCCTTGT 59.647 41.667 11.18 0.00 42.62 3.16
2675 3761 4.918588 AGGGGTTGTAGTTACATTCCTTG 58.081 43.478 11.18 0.00 35.89 3.61
2676 3762 6.707273 TTAGGGGTTGTAGTTACATTCCTT 57.293 37.500 11.24 7.24 35.89 3.36
2677 3763 6.707273 TTTAGGGGTTGTAGTTACATTCCT 57.293 37.500 10.94 10.94 35.89 3.36
2678 3764 7.764141 TTTTTAGGGGTTGTAGTTACATTCC 57.236 36.000 0.00 0.30 35.89 3.01
2679 3765 9.850628 GAATTTTTAGGGGTTGTAGTTACATTC 57.149 33.333 0.00 0.00 35.89 2.67
2680 3766 9.369672 TGAATTTTTAGGGGTTGTAGTTACATT 57.630 29.630 0.00 0.00 35.89 2.71
2681 3767 8.943594 TGAATTTTTAGGGGTTGTAGTTACAT 57.056 30.769 0.00 0.00 35.89 2.29
2682 3768 7.449086 CCTGAATTTTTAGGGGTTGTAGTTACA 59.551 37.037 0.00 0.00 0.00 2.41
2683 3769 7.449395 ACCTGAATTTTTAGGGGTTGTAGTTAC 59.551 37.037 6.14 0.00 38.42 2.50
2684 3770 7.528675 ACCTGAATTTTTAGGGGTTGTAGTTA 58.471 34.615 6.14 0.00 38.42 2.24
2685 3771 6.378745 ACCTGAATTTTTAGGGGTTGTAGTT 58.621 36.000 6.14 0.00 38.42 2.24
2686 3772 5.960704 ACCTGAATTTTTAGGGGTTGTAGT 58.039 37.500 6.14 0.00 38.42 2.73
2687 3773 5.417894 GGACCTGAATTTTTAGGGGTTGTAG 59.582 44.000 6.14 0.00 38.42 2.74
2688 3774 5.326900 GGACCTGAATTTTTAGGGGTTGTA 58.673 41.667 6.14 0.00 38.42 2.41
2689 3775 4.157246 GGACCTGAATTTTTAGGGGTTGT 58.843 43.478 6.14 0.00 38.42 3.32
2690 3776 3.192633 CGGACCTGAATTTTTAGGGGTTG 59.807 47.826 6.14 0.00 38.42 3.77
2691 3777 3.074836 TCGGACCTGAATTTTTAGGGGTT 59.925 43.478 6.14 0.00 38.42 4.11
2692 3778 2.645797 TCGGACCTGAATTTTTAGGGGT 59.354 45.455 6.14 0.00 38.42 4.95
2693 3779 3.359695 TCGGACCTGAATTTTTAGGGG 57.640 47.619 6.14 0.00 38.42 4.79
2694 3780 4.332828 AGTTCGGACCTGAATTTTTAGGG 58.667 43.478 6.14 0.00 38.42 3.53
2695 3781 4.092968 CGAGTTCGGACCTGAATTTTTAGG 59.907 45.833 0.00 0.00 36.57 2.69
2696 3782 4.927425 TCGAGTTCGGACCTGAATTTTTAG 59.073 41.667 1.26 0.00 40.29 1.85
2697 3783 4.885413 TCGAGTTCGGACCTGAATTTTTA 58.115 39.130 1.26 0.00 40.29 1.52
2698 3784 3.735591 TCGAGTTCGGACCTGAATTTTT 58.264 40.909 1.26 0.00 40.29 1.94
2699 3785 3.396260 TCGAGTTCGGACCTGAATTTT 57.604 42.857 1.26 0.00 40.29 1.82
2700 3786 3.396260 TTCGAGTTCGGACCTGAATTT 57.604 42.857 1.26 0.00 40.29 1.82
2701 3787 3.396260 TTTCGAGTTCGGACCTGAATT 57.604 42.857 1.26 0.00 40.29 2.17
2702 3788 3.262420 CATTTCGAGTTCGGACCTGAAT 58.738 45.455 1.26 0.00 40.29 2.57
2703 3789 2.036733 ACATTTCGAGTTCGGACCTGAA 59.963 45.455 1.26 0.00 40.29 3.02
2704 3790 1.616865 ACATTTCGAGTTCGGACCTGA 59.383 47.619 1.26 0.00 40.29 3.86
2705 3791 1.726791 CACATTTCGAGTTCGGACCTG 59.273 52.381 1.26 0.00 40.29 4.00
2706 3792 1.939838 GCACATTTCGAGTTCGGACCT 60.940 52.381 1.26 0.00 40.29 3.85
2707 3793 0.442699 GCACATTTCGAGTTCGGACC 59.557 55.000 1.26 0.00 40.29 4.46
2708 3794 1.136336 GTGCACATTTCGAGTTCGGAC 60.136 52.381 13.17 0.00 40.29 4.79
2709 3795 1.144969 GTGCACATTTCGAGTTCGGA 58.855 50.000 13.17 0.00 40.29 4.55
2710 3796 1.136252 CAGTGCACATTTCGAGTTCGG 60.136 52.381 21.04 0.00 40.29 4.30
2711 3797 1.722751 GCAGTGCACATTTCGAGTTCG 60.723 52.381 21.04 0.00 41.45 3.95
2712 3798 1.722751 CGCAGTGCACATTTCGAGTTC 60.723 52.381 21.04 0.00 0.00 3.01
2713 3799 0.235665 CGCAGTGCACATTTCGAGTT 59.764 50.000 21.04 0.00 0.00 3.01
2714 3800 0.599991 TCGCAGTGCACATTTCGAGT 60.600 50.000 21.04 0.00 0.00 4.18
2715 3801 0.512518 TTCGCAGTGCACATTTCGAG 59.487 50.000 21.04 3.76 0.00 4.04
2716 3802 0.940833 TTTCGCAGTGCACATTTCGA 59.059 45.000 21.04 17.52 0.00 3.71
2717 3803 1.044725 GTTTCGCAGTGCACATTTCG 58.955 50.000 21.04 15.53 0.00 3.46
2718 3804 2.118228 TGTTTCGCAGTGCACATTTC 57.882 45.000 21.04 3.64 0.00 2.17
2719 3805 2.575694 TTGTTTCGCAGTGCACATTT 57.424 40.000 21.04 0.00 0.00 2.32
2720 3806 2.575694 TTTGTTTCGCAGTGCACATT 57.424 40.000 21.04 0.00 0.00 2.71
2721 3807 2.575694 TTTTGTTTCGCAGTGCACAT 57.424 40.000 21.04 0.75 0.00 3.21
2722 3808 2.354109 TTTTTGTTTCGCAGTGCACA 57.646 40.000 21.04 9.36 0.00 4.57
2723 3809 2.602660 ACATTTTTGTTTCGCAGTGCAC 59.397 40.909 16.83 9.40 0.00 4.57
2724 3810 2.602211 CACATTTTTGTTTCGCAGTGCA 59.398 40.909 16.83 0.00 0.00 4.57
2725 3811 2.857152 TCACATTTTTGTTTCGCAGTGC 59.143 40.909 4.58 4.58 0.00 4.40
2726 3812 5.447478 TTTCACATTTTTGTTTCGCAGTG 57.553 34.783 0.00 0.00 0.00 3.66
2727 3813 5.234116 GGATTTCACATTTTTGTTTCGCAGT 59.766 36.000 0.00 0.00 0.00 4.40
2728 3814 5.610124 CGGATTTCACATTTTTGTTTCGCAG 60.610 40.000 0.00 0.00 0.00 5.18
2729 3815 4.208047 CGGATTTCACATTTTTGTTTCGCA 59.792 37.500 0.00 0.00 0.00 5.10
2730 3816 4.375908 CCGGATTTCACATTTTTGTTTCGC 60.376 41.667 0.00 0.00 0.00 4.70
2731 3817 4.375908 GCCGGATTTCACATTTTTGTTTCG 60.376 41.667 5.05 0.00 0.00 3.46
2732 3818 4.509600 TGCCGGATTTCACATTTTTGTTTC 59.490 37.500 5.05 0.00 0.00 2.78
2733 3819 4.446371 TGCCGGATTTCACATTTTTGTTT 58.554 34.783 5.05 0.00 0.00 2.83
2734 3820 4.065321 TGCCGGATTTCACATTTTTGTT 57.935 36.364 5.05 0.00 0.00 2.83
2735 3821 3.742433 TGCCGGATTTCACATTTTTGT 57.258 38.095 5.05 0.00 0.00 2.83
2736 3822 4.244066 TCATGCCGGATTTCACATTTTTG 58.756 39.130 5.05 0.00 0.00 2.44
2737 3823 4.533919 TCATGCCGGATTTCACATTTTT 57.466 36.364 5.05 0.00 0.00 1.94
2738 3824 4.533919 TTCATGCCGGATTTCACATTTT 57.466 36.364 5.05 0.00 0.00 1.82
2739 3825 4.741321 ATTCATGCCGGATTTCACATTT 57.259 36.364 5.05 0.00 0.00 2.32
2740 3826 4.889409 ACTATTCATGCCGGATTTCACATT 59.111 37.500 5.05 0.00 0.00 2.71
2741 3827 4.276678 CACTATTCATGCCGGATTTCACAT 59.723 41.667 5.05 0.00 0.00 3.21
2742 3828 3.627123 CACTATTCATGCCGGATTTCACA 59.373 43.478 5.05 0.00 0.00 3.58
2743 3829 3.627577 ACACTATTCATGCCGGATTTCAC 59.372 43.478 5.05 0.00 0.00 3.18
2744 3830 3.884895 ACACTATTCATGCCGGATTTCA 58.115 40.909 5.05 0.00 0.00 2.69
2745 3831 7.667043 TTATACACTATTCATGCCGGATTTC 57.333 36.000 5.05 0.00 0.00 2.17
2746 3832 7.936847 TCTTTATACACTATTCATGCCGGATTT 59.063 33.333 5.05 0.00 0.00 2.17
2747 3833 7.387948 GTCTTTATACACTATTCATGCCGGATT 59.612 37.037 5.05 0.00 0.00 3.01
2748 3834 6.874134 GTCTTTATACACTATTCATGCCGGAT 59.126 38.462 5.05 0.00 0.00 4.18
2749 3835 6.183360 TGTCTTTATACACTATTCATGCCGGA 60.183 38.462 5.05 0.00 0.00 5.14
2750 3836 5.989168 TGTCTTTATACACTATTCATGCCGG 59.011 40.000 0.00 0.00 0.00 6.13
2751 3837 7.477144 TTGTCTTTATACACTATTCATGCCG 57.523 36.000 0.00 0.00 0.00 5.69
2768 3854 9.683069 GATAGTGTCAATGTTGATTTTGTCTTT 57.317 29.630 0.00 0.00 39.73 2.52
2769 3855 8.299570 GGATAGTGTCAATGTTGATTTTGTCTT 58.700 33.333 0.00 0.00 39.73 3.01
2770 3856 7.448161 TGGATAGTGTCAATGTTGATTTTGTCT 59.552 33.333 0.00 0.00 39.73 3.41
2771 3857 7.538678 GTGGATAGTGTCAATGTTGATTTTGTC 59.461 37.037 0.00 0.00 39.73 3.18
2772 3858 7.370383 GTGGATAGTGTCAATGTTGATTTTGT 58.630 34.615 0.00 0.00 39.73 2.83
2773 3859 6.524239 CGTGGATAGTGTCAATGTTGATTTTG 59.476 38.462 0.00 0.00 39.73 2.44
2774 3860 6.206634 ACGTGGATAGTGTCAATGTTGATTTT 59.793 34.615 0.00 0.00 39.73 1.82
2775 3861 5.705441 ACGTGGATAGTGTCAATGTTGATTT 59.295 36.000 0.00 0.00 39.73 2.17
2776 3862 5.245531 ACGTGGATAGTGTCAATGTTGATT 58.754 37.500 0.00 0.00 39.73 2.57
2777 3863 4.832248 ACGTGGATAGTGTCAATGTTGAT 58.168 39.130 0.00 0.00 39.73 2.57
2778 3864 4.021456 AGACGTGGATAGTGTCAATGTTGA 60.021 41.667 0.00 0.00 29.83 3.18
2779 3865 4.091945 CAGACGTGGATAGTGTCAATGTTG 59.908 45.833 0.00 0.00 29.83 3.33
2780 3866 4.245660 CAGACGTGGATAGTGTCAATGTT 58.754 43.478 0.00 0.00 29.83 2.71
2781 3867 3.849911 CAGACGTGGATAGTGTCAATGT 58.150 45.455 0.00 0.00 32.48 2.71
2794 3880 3.753272 AGAAATGTGAAATCCAGACGTGG 59.247 43.478 0.00 0.00 46.63 4.94
2795 3881 4.214119 ACAGAAATGTGAAATCCAGACGTG 59.786 41.667 0.00 0.00 0.00 4.49
2796 3882 4.389374 ACAGAAATGTGAAATCCAGACGT 58.611 39.130 0.00 0.00 0.00 4.34
2797 3883 5.362556 AACAGAAATGTGAAATCCAGACG 57.637 39.130 0.00 0.00 0.00 4.18
2798 3884 6.974965 AGAAACAGAAATGTGAAATCCAGAC 58.025 36.000 0.00 0.00 0.00 3.51
2799 3885 6.772233 TGAGAAACAGAAATGTGAAATCCAGA 59.228 34.615 0.00 0.00 0.00 3.86
2800 3886 6.973843 TGAGAAACAGAAATGTGAAATCCAG 58.026 36.000 0.00 0.00 0.00 3.86
2801 3887 6.957920 TGAGAAACAGAAATGTGAAATCCA 57.042 33.333 0.00 0.00 0.00 3.41
2802 3888 7.869429 ACATTGAGAAACAGAAATGTGAAATCC 59.131 33.333 0.00 0.00 40.71 3.01
2803 3889 8.807667 ACATTGAGAAACAGAAATGTGAAATC 57.192 30.769 0.00 0.00 40.71 2.17
2829 3915 8.544597 GGTGCACGAAGTTTAAAAACAAATATT 58.455 29.630 11.45 0.00 41.61 1.28
2830 3916 8.067780 GGTGCACGAAGTTTAAAAACAAATAT 57.932 30.769 11.45 0.00 41.61 1.28
2831 3917 7.452630 GGTGCACGAAGTTTAAAAACAAATA 57.547 32.000 11.45 0.00 41.61 1.40
2832 3918 6.339194 GGTGCACGAAGTTTAAAAACAAAT 57.661 33.333 11.45 0.00 41.61 2.32
2833 3919 5.765072 GGTGCACGAAGTTTAAAAACAAA 57.235 34.783 11.45 0.00 41.61 2.83
2848 3934 4.446413 GGGTACTCCCGGTGCACG 62.446 72.222 11.45 6.23 44.74 5.34
2857 3943 2.375173 CGGTTACAACTGGGTACTCC 57.625 55.000 0.00 0.00 0.00 3.85
2865 3951 0.322322 TGGCCTACCGGTTACAACTG 59.678 55.000 15.04 0.00 39.70 3.16
2866 3952 1.065709 CATGGCCTACCGGTTACAACT 60.066 52.381 15.04 0.00 39.70 3.16
2867 3953 1.065998 TCATGGCCTACCGGTTACAAC 60.066 52.381 15.04 0.03 39.70 3.32
2868 3954 1.277579 TCATGGCCTACCGGTTACAA 58.722 50.000 15.04 0.00 39.70 2.41
2869 3955 1.208535 CTTCATGGCCTACCGGTTACA 59.791 52.381 15.04 7.60 39.70 2.41
2870 3956 1.949465 CTTCATGGCCTACCGGTTAC 58.051 55.000 15.04 1.82 39.70 2.50
2871 3957 0.179468 GCTTCATGGCCTACCGGTTA 59.821 55.000 15.04 0.00 39.70 2.85
2872 3958 1.077716 GCTTCATGGCCTACCGGTT 60.078 57.895 15.04 0.00 39.70 4.44
2873 3959 2.590092 GCTTCATGGCCTACCGGT 59.410 61.111 13.98 13.98 39.70 5.28
2881 3967 3.869272 CACGAGCGGCTTCATGGC 61.869 66.667 2.97 0.00 37.94 4.40
2882 3968 3.869272 GCACGAGCGGCTTCATGG 61.869 66.667 2.97 0.00 0.00 3.66
2883 3969 3.120385 TGCACGAGCGGCTTCATG 61.120 61.111 2.97 4.32 46.23 3.07
2884 3970 3.121030 GTGCACGAGCGGCTTCAT 61.121 61.111 2.97 0.00 46.23 2.57
2885 3971 4.600576 TGTGCACGAGCGGCTTCA 62.601 61.111 13.13 0.00 46.23 3.02
2886 3972 4.077188 GTGTGCACGAGCGGCTTC 62.077 66.667 13.13 0.00 46.23 3.86
2887 3973 2.709125 TAAGTGTGCACGAGCGGCTT 62.709 55.000 13.13 11.12 46.23 4.35
2888 3974 3.220999 TAAGTGTGCACGAGCGGCT 62.221 57.895 13.13 0.00 46.23 5.52
2889 3975 2.736995 TAAGTGTGCACGAGCGGC 60.737 61.111 13.13 0.00 46.23 6.53
2890 3976 1.372997 AGTAAGTGTGCACGAGCGG 60.373 57.895 13.13 0.00 46.23 5.52
2891 3977 0.663269 TCAGTAAGTGTGCACGAGCG 60.663 55.000 13.13 0.00 46.23 5.03
2892 3978 1.714794 ATCAGTAAGTGTGCACGAGC 58.285 50.000 13.13 5.04 42.57 5.03
2893 3979 4.732285 AAAATCAGTAAGTGTGCACGAG 57.268 40.909 13.13 0.00 36.20 4.18
2894 3980 6.311935 GGTATAAAATCAGTAAGTGTGCACGA 59.688 38.462 13.13 1.22 36.20 4.35
2895 3981 6.312918 AGGTATAAAATCAGTAAGTGTGCACG 59.687 38.462 13.13 0.00 36.20 5.34
2896 3982 7.611213 AGGTATAAAATCAGTAAGTGTGCAC 57.389 36.000 10.75 10.75 0.00 4.57
2897 3983 8.630054 AAAGGTATAAAATCAGTAAGTGTGCA 57.370 30.769 0.00 0.00 0.00 4.57
2928 4014 2.478831 GGCTTCCGCAAACATGAAAAA 58.521 42.857 0.00 0.00 38.10 1.94
2929 4015 1.270041 GGGCTTCCGCAAACATGAAAA 60.270 47.619 0.00 0.00 38.10 2.29
2930 4016 0.316841 GGGCTTCCGCAAACATGAAA 59.683 50.000 0.00 0.00 38.10 2.69
2931 4017 0.539438 AGGGCTTCCGCAAACATGAA 60.539 50.000 0.00 0.00 38.10 2.57
2932 4018 1.074775 AGGGCTTCCGCAAACATGA 59.925 52.632 0.00 0.00 38.10 3.07
2933 4019 1.213537 CAGGGCTTCCGCAAACATG 59.786 57.895 0.00 0.00 38.10 3.21
2934 4020 1.978617 CCAGGGCTTCCGCAAACAT 60.979 57.895 0.00 0.00 38.10 2.71
2935 4021 2.597217 CCAGGGCTTCCGCAAACA 60.597 61.111 0.00 0.00 38.10 2.83
2936 4022 1.744320 AAACCAGGGCTTCCGCAAAC 61.744 55.000 0.00 0.00 38.10 2.93
2937 4023 1.045911 AAAACCAGGGCTTCCGCAAA 61.046 50.000 0.00 0.00 38.10 3.68
2938 4024 1.456705 AAAACCAGGGCTTCCGCAA 60.457 52.632 0.00 0.00 38.10 4.85
2939 4025 2.197324 AAAACCAGGGCTTCCGCA 59.803 55.556 0.00 0.00 38.10 5.69
2940 4026 2.650778 CAAAACCAGGGCTTCCGC 59.349 61.111 0.00 0.00 35.17 5.54
2941 4027 2.275380 CCCAAAACCAGGGCTTCCG 61.275 63.158 0.00 0.00 39.96 4.30
2942 4028 0.471022 TTCCCAAAACCAGGGCTTCC 60.471 55.000 0.00 0.00 46.36 3.46
2943 4029 0.969149 CTTCCCAAAACCAGGGCTTC 59.031 55.000 0.00 0.00 46.36 3.86
2944 4030 1.121407 GCTTCCCAAAACCAGGGCTT 61.121 55.000 0.00 0.00 46.36 4.35
2945 4031 1.533994 GCTTCCCAAAACCAGGGCT 60.534 57.895 0.00 0.00 46.36 5.19
2946 4032 1.121407 AAGCTTCCCAAAACCAGGGC 61.121 55.000 0.00 0.00 46.36 5.19
2948 4034 0.969149 GGAAGCTTCCCAAAACCAGG 59.031 55.000 31.91 0.00 41.62 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.