Multiple sequence alignment - TraesCS4D01G285600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G285600 chr4D 100.000 3955 0 0 1 3955 456090562 456086608 0.000000e+00 7304
1 TraesCS4D01G285600 chr4D 91.979 187 13 2 3608 3794 258920782 258920598 1.090000e-65 261
2 TraesCS4D01G285600 chr4D 85.532 235 28 3 3634 3863 103478112 103477879 1.420000e-59 241
3 TraesCS4D01G285600 chr4B 87.494 1927 117 49 732 2619 570243183 570241342 0.000000e+00 2109
4 TraesCS4D01G285600 chr4B 89.016 610 30 11 2680 3256 570241344 570240739 0.000000e+00 721
5 TraesCS4D01G285600 chr4B 82.616 604 33 28 163 729 570243798 570243230 5.980000e-128 468
6 TraesCS4D01G285600 chr4B 90.751 346 26 3 3268 3608 570240693 570240349 1.300000e-124 457
7 TraesCS4D01G285600 chr4B 91.946 149 11 1 24 171 570244098 570243950 1.440000e-49 207
8 TraesCS4D01G285600 chr4A 87.690 1121 65 40 2537 3606 11647894 11648992 0.000000e+00 1238
9 TraesCS4D01G285600 chr4A 85.307 1157 64 44 739 1834 11646301 11647412 0.000000e+00 1098
10 TraesCS4D01G285600 chr4A 87.500 496 33 11 1871 2340 11647409 11647901 2.690000e-151 545
11 TraesCS4D01G285600 chr4A 83.612 598 34 17 26 618 11645575 11646113 1.640000e-138 503
12 TraesCS4D01G285600 chr4A 86.878 221 20 3 3608 3828 26326064 26326275 5.110000e-59 239
13 TraesCS4D01G285600 chr7D 84.865 370 40 8 3212 3566 457186649 457186281 3.760000e-95 359
14 TraesCS4D01G285600 chr7D 87.460 311 37 2 3257 3566 201194268 201194577 1.350000e-94 357
15 TraesCS4D01G285600 chr7A 84.595 370 41 9 3212 3566 543065211 543065579 1.750000e-93 353
16 TraesCS4D01G285600 chr7B 86.495 311 40 2 3257 3566 479493634 479493325 1.360000e-89 340
17 TraesCS4D01G285600 chr7B 88.000 200 23 1 3602 3801 444122461 444122659 6.610000e-58 235
18 TraesCS4D01G285600 chr5D 84.290 331 43 8 3609 3935 292945232 292945557 8.250000e-82 315
19 TraesCS4D01G285600 chr2B 91.441 222 17 1 3608 3829 406104423 406104204 1.790000e-78 303
20 TraesCS4D01G285600 chr1D 87.352 253 30 2 3608 3859 458223386 458223135 5.000000e-74 289
21 TraesCS4D01G285600 chr1D 91.398 186 16 0 3609 3794 24077282 24077467 5.070000e-64 255
22 TraesCS4D01G285600 chr1D 92.562 121 7 2 3822 3942 458223125 458223007 5.250000e-39 172
23 TraesCS4D01G285600 chr1B 88.312 231 21 6 3605 3831 30522446 30522218 5.040000e-69 272


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G285600 chr4D 456086608 456090562 3954 True 7304.0 7304 100.00000 1 3955 1 chr4D.!!$R3 3954
1 TraesCS4D01G285600 chr4B 570240349 570244098 3749 True 792.4 2109 88.36460 24 3608 5 chr4B.!!$R1 3584
2 TraesCS4D01G285600 chr4A 11645575 11648992 3417 False 846.0 1238 86.02725 26 3606 4 chr4A.!!$F2 3580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
472 658 0.609131 ATCCCAAAGCCGTGTGAAGG 60.609 55.0 0.00 0.00 0.00 3.46 F
1124 1457 0.528684 CCTTCCTCGCGATCTGGTTC 60.529 60.0 10.36 0.00 0.00 3.62 F
2318 2732 0.242825 CTGCTTGGCAAGGACACATG 59.757 55.0 27.25 9.74 38.41 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2135 2537 0.702902 AGGGCCCATCATCATCATCC 59.297 55.000 27.56 0.0 0.0 3.51 R
2898 3358 1.134159 CCTCTTCCTTCCCTGCATCAG 60.134 57.143 0.00 0.0 0.0 2.90 R
3632 4151 0.037697 TGCATACGAAACGCAGACCT 60.038 50.000 0.00 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.238432 TGCGAATGTTACACCAATATCATCC 59.762 40.000 0.00 0.00 0.00 3.51
48 49 2.288457 ACCAATATCATCCGAGTCGCTG 60.288 50.000 7.12 7.00 0.00 5.18
107 109 0.897863 TTGGCAACCGAATCCCTTGG 60.898 55.000 0.00 0.00 0.00 3.61
338 502 4.337060 GCCCAACCCAACGCGTTC 62.337 66.667 23.92 4.19 0.00 3.95
351 515 1.579429 GCGTTCGGCCAACAAAGAT 59.421 52.632 2.24 0.00 34.20 2.40
384 548 3.062466 TCTCCGGTGAGCTGGACG 61.062 66.667 0.00 0.00 44.85 4.79
416 584 1.636570 GACCTTTCTCGCCGCCTTTC 61.637 60.000 0.00 0.00 0.00 2.62
427 595 3.631127 GCCTTTCCGCGCTCGATC 61.631 66.667 5.56 0.00 38.10 3.69
440 608 2.817834 CGATCGCTGGCCGGAAAA 60.818 61.111 18.31 0.00 37.59 2.29
441 609 2.813179 CGATCGCTGGCCGGAAAAG 61.813 63.158 18.31 0.00 37.59 2.27
442 610 1.449601 GATCGCTGGCCGGAAAAGA 60.450 57.895 18.31 8.87 37.59 2.52
443 611 1.432270 GATCGCTGGCCGGAAAAGAG 61.432 60.000 18.31 0.00 37.59 2.85
444 612 2.876368 ATCGCTGGCCGGAAAAGAGG 62.876 60.000 18.31 0.00 37.59 3.69
472 658 0.609131 ATCCCAAAGCCGTGTGAAGG 60.609 55.000 0.00 0.00 0.00 3.46
618 836 0.756903 GGCGGTAGTACCACATCCAT 59.243 55.000 19.41 0.00 38.47 3.41
619 837 1.270147 GGCGGTAGTACCACATCCATC 60.270 57.143 19.41 0.00 38.47 3.51
620 838 1.270147 GCGGTAGTACCACATCCATCC 60.270 57.143 19.41 0.00 38.47 3.51
621 839 2.036387 CGGTAGTACCACATCCATCCA 58.964 52.381 19.41 0.00 38.47 3.41
660 887 3.498397 CGCCTAATCGCAGTCCAAATTAT 59.502 43.478 0.00 0.00 0.00 1.28
665 892 7.468084 GCCTAATCGCAGTCCAAATTATGTTTA 60.468 37.037 0.00 0.00 0.00 2.01
666 893 8.070171 CCTAATCGCAGTCCAAATTATGTTTAG 58.930 37.037 0.00 0.00 0.00 1.85
667 894 5.229921 TCGCAGTCCAAATTATGTTTAGC 57.770 39.130 0.00 0.00 0.00 3.09
668 895 4.697828 TCGCAGTCCAAATTATGTTTAGCA 59.302 37.500 0.00 0.00 0.00 3.49
669 896 4.793216 CGCAGTCCAAATTATGTTTAGCAC 59.207 41.667 0.00 0.00 0.00 4.40
670 897 5.391950 CGCAGTCCAAATTATGTTTAGCACT 60.392 40.000 0.00 0.00 0.00 4.40
671 898 6.183360 CGCAGTCCAAATTATGTTTAGCACTA 60.183 38.462 0.00 0.00 0.00 2.74
673 900 8.026607 GCAGTCCAAATTATGTTTAGCACTAAA 58.973 33.333 0.00 0.00 33.10 1.85
725 953 3.521796 GCCCTGAGATTTGGCCGC 61.522 66.667 0.00 0.00 39.30 6.53
729 957 1.153449 CTGAGATTTGGCCGCGGTA 60.153 57.895 28.70 14.00 0.00 4.02
760 1055 5.475909 TCTGGCCGTCAACCTATATAAGTAG 59.524 44.000 0.00 0.00 0.00 2.57
823 1119 6.253298 CACACACATTTCCTTGTAGTTTTGTG 59.747 38.462 0.00 0.00 39.20 3.33
824 1120 6.071616 ACACACATTTCCTTGTAGTTTTGTGT 60.072 34.615 0.00 0.00 45.14 3.72
825 1121 6.329496 ACACATTTCCTTGTAGTTTTGTGTG 58.671 36.000 4.72 0.00 43.29 3.82
826 1122 6.071616 ACACATTTCCTTGTAGTTTTGTGTGT 60.072 34.615 4.72 0.00 43.29 3.72
854 1152 1.055040 CACCCCTCTCATCTCATCCC 58.945 60.000 0.00 0.00 0.00 3.85
1124 1457 0.528684 CCTTCCTCGCGATCTGGTTC 60.529 60.000 10.36 0.00 0.00 3.62
1127 1460 1.880340 CCTCGCGATCTGGTTCTGC 60.880 63.158 10.36 0.00 0.00 4.26
1373 1706 2.643272 CACAAGCAGCAGCACCAG 59.357 61.111 3.17 0.00 45.49 4.00
1477 1813 2.509336 CTCGCCCACGGTAAGCAG 60.509 66.667 2.97 0.00 40.63 4.24
1517 1861 3.248602 GCTGCTTACTATTCGGATTGGTG 59.751 47.826 0.00 0.00 0.00 4.17
1545 1891 3.479203 TCATGGATTCCGCCGCCT 61.479 61.111 0.00 0.00 0.00 5.52
1589 1935 4.554723 CGTGTCCACAACTTTTCTCCATTC 60.555 45.833 0.00 0.00 0.00 2.67
1629 1983 5.787380 AGCAAACTTTTCTCCATTTCCATC 58.213 37.500 0.00 0.00 0.00 3.51
1657 2014 2.376109 TCTTAGCTGACCCGGAACTAG 58.624 52.381 0.73 0.00 0.00 2.57
1658 2015 2.100989 CTTAGCTGACCCGGAACTAGT 58.899 52.381 0.73 0.00 0.00 2.57
1659 2016 1.471119 TAGCTGACCCGGAACTAGTG 58.529 55.000 0.73 0.00 0.00 2.74
1676 2033 6.466885 ACTAGTGGTAGCATAAAGATTCGT 57.533 37.500 0.00 0.00 0.00 3.85
1691 2048 6.963049 AAGATTCGTACTTTCTGCGTTAAT 57.037 33.333 0.00 0.00 0.00 1.40
1696 2060 6.621737 TCGTACTTTCTGCGTTAATTACTG 57.378 37.500 0.00 0.00 0.00 2.74
1720 2086 3.857854 CAGTAAGCGGCGCTGCTG 61.858 66.667 42.11 34.93 46.60 4.41
1735 2107 2.989840 GCTGCTGCGGATAACAGTATAG 59.010 50.000 13.72 0.00 37.47 1.31
1752 2124 8.848474 ACAGTATAGTATTCTTTGCTTGTTGT 57.152 30.769 0.00 0.00 0.00 3.32
1753 2125 9.284968 ACAGTATAGTATTCTTTGCTTGTTGTT 57.715 29.630 0.00 0.00 0.00 2.83
1756 2128 9.262472 GTATAGTATTCTTTGCTTGTTGTTTCG 57.738 33.333 0.00 0.00 0.00 3.46
1757 2129 4.976116 AGTATTCTTTGCTTGTTGTTTCGC 59.024 37.500 0.00 0.00 0.00 4.70
1758 2130 3.502191 TTCTTTGCTTGTTGTTTCGCT 57.498 38.095 0.00 0.00 0.00 4.93
1759 2131 3.065019 TCTTTGCTTGTTGTTTCGCTC 57.935 42.857 0.00 0.00 0.00 5.03
1760 2132 2.421775 TCTTTGCTTGTTGTTTCGCTCA 59.578 40.909 0.00 0.00 0.00 4.26
1761 2133 2.929531 TTGCTTGTTGTTTCGCTCAA 57.070 40.000 0.00 0.00 0.00 3.02
1762 2134 2.473530 TGCTTGTTGTTTCGCTCAAG 57.526 45.000 0.00 0.00 39.83 3.02
1763 2135 1.742831 TGCTTGTTGTTTCGCTCAAGT 59.257 42.857 0.00 0.00 39.28 3.16
1764 2136 2.163412 TGCTTGTTGTTTCGCTCAAGTT 59.837 40.909 0.00 0.00 39.28 2.66
1765 2137 3.375610 TGCTTGTTGTTTCGCTCAAGTTA 59.624 39.130 0.00 0.00 39.28 2.24
1766 2138 3.968724 GCTTGTTGTTTCGCTCAAGTTAG 59.031 43.478 0.00 0.00 39.28 2.34
1767 2139 3.602390 TGTTGTTTCGCTCAAGTTAGC 57.398 42.857 0.00 0.00 39.21 3.09
1811 2183 1.739196 GCCGGGTCAAACTCGTACC 60.739 63.158 2.18 0.00 41.30 3.34
1824 2196 1.301087 CGTACCCCAACGCACTGAA 60.301 57.895 0.00 0.00 35.87 3.02
1865 2239 4.537015 GAACACAGCAGTAAATTCCACAC 58.463 43.478 0.00 0.00 0.00 3.82
1866 2240 3.550820 ACACAGCAGTAAATTCCACACA 58.449 40.909 0.00 0.00 0.00 3.72
1867 2241 3.951037 ACACAGCAGTAAATTCCACACAA 59.049 39.130 0.00 0.00 0.00 3.33
1868 2242 4.036734 ACACAGCAGTAAATTCCACACAAG 59.963 41.667 0.00 0.00 0.00 3.16
1869 2243 4.036734 CACAGCAGTAAATTCCACACAAGT 59.963 41.667 0.00 0.00 0.00 3.16
1874 2248 4.753107 CAGTAAATTCCACACAAGTACCGT 59.247 41.667 0.00 0.00 0.00 4.83
1940 2315 4.810191 AGTACTCAAAGAAGTGCTAGGG 57.190 45.455 0.00 0.00 39.97 3.53
1944 2319 5.248380 ACTCAAAGAAGTGCTAGGGAAAT 57.752 39.130 0.00 0.00 0.00 2.17
1953 2328 6.655425 AGAAGTGCTAGGGAAATAAAGAACAC 59.345 38.462 0.00 0.00 0.00 3.32
1984 2359 7.059488 GTGAAACTAAATTTGTATCACAGCGTG 59.941 37.037 16.60 2.79 34.45 5.34
1985 2360 6.795098 AACTAAATTTGTATCACAGCGTGA 57.205 33.333 12.53 12.53 46.90 4.35
2014 2404 7.631183 GCATTACTCTGCATTTACCTGATGGT 61.631 42.308 0.00 0.00 44.54 3.55
2069 2471 4.411256 TGAACCGGAGAAAACAAGTACT 57.589 40.909 9.46 0.00 0.00 2.73
2070 2472 5.534207 TGAACCGGAGAAAACAAGTACTA 57.466 39.130 9.46 0.00 0.00 1.82
2071 2473 5.291971 TGAACCGGAGAAAACAAGTACTAC 58.708 41.667 9.46 0.00 0.00 2.73
2076 2478 5.699458 CCGGAGAAAACAAGTACTACAACAT 59.301 40.000 0.00 0.00 0.00 2.71
2078 2480 6.645415 CGGAGAAAACAAGTACTACAACATCT 59.355 38.462 0.00 0.00 0.00 2.90
2105 2507 3.178540 AACCGCCGCCTCTGTTTCT 62.179 57.895 0.00 0.00 0.00 2.52
2107 2509 3.793144 CGCCGCCTCTGTTTCTGC 61.793 66.667 0.00 0.00 0.00 4.26
2161 2563 1.217436 TGATGATGGGCCCTATGCAAA 59.783 47.619 25.70 0.00 43.89 3.68
2315 2729 1.900498 AGCTGCTTGGCAAGGACAC 60.900 57.895 27.25 17.27 38.41 3.67
2318 2732 0.242825 CTGCTTGGCAAGGACACATG 59.757 55.000 27.25 9.74 38.41 3.21
2336 2750 7.307632 GGACACATGATCTCATTTTCCTAATCG 60.308 40.741 0.00 0.00 33.61 3.34
2364 2781 6.650427 TTACTCGATATGTGTATGCCTCTT 57.350 37.500 0.00 0.00 0.00 2.85
2366 2783 6.260870 ACTCGATATGTGTATGCCTCTTAG 57.739 41.667 0.00 0.00 0.00 2.18
2387 2804 2.981140 GAGGCTGTATCGATAAAGCGAC 59.019 50.000 31.67 25.13 43.14 5.19
2390 2807 2.401063 GCTGTATCGATAAAGCGACGAC 59.599 50.000 27.43 7.00 43.79 4.34
2394 2811 3.627732 ATCGATAAAGCGACGACTGAT 57.372 42.857 0.00 0.00 43.79 2.90
2395 2812 4.744136 ATCGATAAAGCGACGACTGATA 57.256 40.909 0.00 0.00 43.79 2.15
2396 2813 4.744136 TCGATAAAGCGACGACTGATAT 57.256 40.909 0.00 0.00 35.01 1.63
2397 2814 4.464112 TCGATAAAGCGACGACTGATATG 58.536 43.478 0.00 0.00 35.01 1.78
2401 2818 2.515926 AGCGACGACTGATATGCATT 57.484 45.000 3.54 0.00 0.00 3.56
2470 2887 6.712276 TCCTAGCTGACGATAGATGATTAGA 58.288 40.000 0.00 0.00 41.38 2.10
2471 2888 7.168905 TCCTAGCTGACGATAGATGATTAGAA 58.831 38.462 0.00 0.00 41.38 2.10
2472 2889 7.665974 TCCTAGCTGACGATAGATGATTAGAAA 59.334 37.037 0.00 0.00 41.38 2.52
2473 2890 7.967854 CCTAGCTGACGATAGATGATTAGAAAG 59.032 40.741 0.00 0.00 41.38 2.62
2494 2911 9.319143 AGAAAGAATGAACTAATAATGAGTCGG 57.681 33.333 0.00 0.00 0.00 4.79
2496 2913 5.992217 AGAATGAACTAATAATGAGTCGGGC 59.008 40.000 0.00 0.00 0.00 6.13
2733 3162 3.791245 TGGCAAACAACATTTCAGAACC 58.209 40.909 0.00 0.00 0.00 3.62
2736 3165 2.399396 AACAACATTTCAGAACCGCG 57.601 45.000 0.00 0.00 0.00 6.46
2772 3201 1.225376 CTGTCGCGCAACCTGGTTAA 61.225 55.000 12.53 0.00 0.00 2.01
2856 3311 1.417517 CACCTGGCTGATGGCTACATA 59.582 52.381 0.00 0.00 41.46 2.29
2857 3312 1.417890 ACCTGGCTGATGGCTACATAC 59.582 52.381 0.00 0.00 41.46 2.39
2858 3313 1.417517 CCTGGCTGATGGCTACATACA 59.582 52.381 0.00 0.00 41.46 2.29
2859 3314 2.039480 CCTGGCTGATGGCTACATACAT 59.961 50.000 0.00 0.00 41.46 2.29
2898 3358 4.692228 TGACTTGGAAGGAATTTGTTTGC 58.308 39.130 0.00 0.00 0.00 3.68
3196 3660 3.008266 TCACTGTGAGAAATGGCATCTGA 59.992 43.478 6.36 0.00 0.00 3.27
3201 3665 4.517832 TGTGAGAAATGGCATCTGATATGC 59.482 41.667 0.00 1.33 43.85 3.14
3202 3666 3.749609 TGAGAAATGGCATCTGATATGCG 59.250 43.478 0.00 0.00 45.41 4.73
3210 3674 4.232221 GGCATCTGATATGCGAATTTTGG 58.768 43.478 4.06 0.00 45.41 3.28
3236 3707 5.360714 CACCCTTACATCAAACTGGCAATAT 59.639 40.000 0.00 0.00 0.00 1.28
3262 3747 2.093288 ACATCGAGTCATCAGCCAACAT 60.093 45.455 0.00 0.00 0.00 2.71
3265 3750 2.495669 TCGAGTCATCAGCCAACATGTA 59.504 45.455 0.00 0.00 0.00 2.29
3338 3843 4.330250 TCCAATTTCTCCTCTGCTTTCAG 58.670 43.478 0.00 0.00 41.67 3.02
3356 3861 1.134075 GCACGACTGCATGCTGAAG 59.866 57.895 28.74 22.03 43.62 3.02
3362 3867 0.965866 ACTGCATGCTGAAGCTGCAT 60.966 50.000 28.74 12.37 46.88 3.96
3369 3874 2.625737 TGCTGAAGCTGCATCTTAGTC 58.374 47.619 2.13 0.00 42.66 2.59
3406 3911 7.140705 GTCATCAAACAACACAATCTCATGAA 58.859 34.615 0.00 0.00 0.00 2.57
3468 3973 0.234884 CGTCGACCTTTGCAAAGACC 59.765 55.000 35.25 24.59 38.28 3.85
3470 3975 1.264288 GTCGACCTTTGCAAAGACCTG 59.736 52.381 35.25 22.38 38.28 4.00
3474 3979 3.502211 CGACCTTTGCAAAGACCTGTATT 59.498 43.478 35.25 12.06 38.28 1.89
3519 4033 6.714810 TGAATATTATGTGGCCTATGTCCAAC 59.285 38.462 3.32 0.00 35.01 3.77
3611 4130 2.249844 ACGAATCGTTCCTTGGTGTT 57.750 45.000 0.96 0.00 36.35 3.32
3612 4131 1.871039 ACGAATCGTTCCTTGGTGTTG 59.129 47.619 0.96 0.00 36.35 3.33
3613 4132 2.139917 CGAATCGTTCCTTGGTGTTGA 58.860 47.619 0.00 0.00 0.00 3.18
3614 4133 2.546368 CGAATCGTTCCTTGGTGTTGAA 59.454 45.455 0.00 0.00 0.00 2.69
3615 4134 3.606153 CGAATCGTTCCTTGGTGTTGAAC 60.606 47.826 0.00 0.00 36.02 3.18
3616 4135 2.404923 TCGTTCCTTGGTGTTGAACA 57.595 45.000 0.00 0.00 38.59 3.18
3617 4136 2.925724 TCGTTCCTTGGTGTTGAACAT 58.074 42.857 0.00 0.00 38.59 2.71
3618 4137 2.616376 TCGTTCCTTGGTGTTGAACATG 59.384 45.455 0.00 0.00 38.59 3.21
3619 4138 2.357637 CGTTCCTTGGTGTTGAACATGT 59.642 45.455 0.00 0.00 38.59 3.21
3620 4139 3.562141 CGTTCCTTGGTGTTGAACATGTA 59.438 43.478 0.00 0.00 38.59 2.29
3621 4140 4.215399 CGTTCCTTGGTGTTGAACATGTAT 59.785 41.667 0.00 0.00 38.59 2.29
3622 4141 5.410132 CGTTCCTTGGTGTTGAACATGTATA 59.590 40.000 0.00 0.00 38.59 1.47
3623 4142 6.608610 GTTCCTTGGTGTTGAACATGTATAC 58.391 40.000 0.00 0.00 38.55 1.47
3624 4143 5.870706 TCCTTGGTGTTGAACATGTATACA 58.129 37.500 8.27 8.27 0.00 2.29
3625 4144 6.480763 TCCTTGGTGTTGAACATGTATACAT 58.519 36.000 12.75 12.75 36.96 2.29
3639 4158 7.875316 CATGTATACATGTACTTAGGTCTGC 57.125 40.000 29.91 0.00 46.40 4.26
3640 4159 6.068473 TGTATACATGTACTTAGGTCTGCG 57.932 41.667 7.96 0.00 0.00 5.18
3641 4160 5.591472 TGTATACATGTACTTAGGTCTGCGT 59.409 40.000 7.96 0.00 0.00 5.24
3642 4161 3.955650 ACATGTACTTAGGTCTGCGTT 57.044 42.857 0.00 0.00 0.00 4.84
3643 4162 4.267349 ACATGTACTTAGGTCTGCGTTT 57.733 40.909 0.00 0.00 0.00 3.60
3644 4163 4.243270 ACATGTACTTAGGTCTGCGTTTC 58.757 43.478 0.00 0.00 0.00 2.78
3645 4164 2.937591 TGTACTTAGGTCTGCGTTTCG 58.062 47.619 0.00 0.00 0.00 3.46
3646 4165 2.294233 TGTACTTAGGTCTGCGTTTCGT 59.706 45.455 0.00 0.00 0.00 3.85
3647 4166 3.501828 TGTACTTAGGTCTGCGTTTCGTA 59.498 43.478 0.00 0.00 0.00 3.43
3648 4167 3.863142 ACTTAGGTCTGCGTTTCGTAT 57.137 42.857 0.00 0.00 0.00 3.06
3649 4168 3.508762 ACTTAGGTCTGCGTTTCGTATG 58.491 45.455 0.00 0.00 0.00 2.39
3650 4169 1.917273 TAGGTCTGCGTTTCGTATGC 58.083 50.000 0.00 0.00 39.33 3.14
3651 4170 0.037697 AGGTCTGCGTTTCGTATGCA 60.038 50.000 0.00 0.00 46.32 3.96
3656 4175 1.352114 TGCGTTTCGTATGCAGTACC 58.648 50.000 0.00 0.00 43.72 3.34
3657 4176 1.067425 TGCGTTTCGTATGCAGTACCT 60.067 47.619 0.00 0.00 43.72 3.08
3658 4177 1.323534 GCGTTTCGTATGCAGTACCTG 59.676 52.381 0.00 0.00 38.70 4.00
3659 4178 2.602878 CGTTTCGTATGCAGTACCTGT 58.397 47.619 0.00 0.00 33.43 4.00
3660 4179 3.761657 CGTTTCGTATGCAGTACCTGTA 58.238 45.455 0.00 0.00 33.43 2.74
3661 4180 3.789756 CGTTTCGTATGCAGTACCTGTAG 59.210 47.826 0.00 0.00 33.43 2.74
3662 4181 4.673580 CGTTTCGTATGCAGTACCTGTAGT 60.674 45.833 0.00 0.00 33.43 2.73
3663 4182 4.365899 TTCGTATGCAGTACCTGTAGTG 57.634 45.455 7.61 7.61 39.02 2.74
3664 4183 3.349927 TCGTATGCAGTACCTGTAGTGT 58.650 45.455 12.42 0.00 38.44 3.55
3665 4184 3.376234 TCGTATGCAGTACCTGTAGTGTC 59.624 47.826 12.42 6.76 38.44 3.67
3666 4185 3.377485 CGTATGCAGTACCTGTAGTGTCT 59.623 47.826 12.42 4.63 38.44 3.41
3667 4186 3.876274 ATGCAGTACCTGTAGTGTCTG 57.124 47.619 12.42 2.21 38.44 3.51
3668 4187 2.594131 TGCAGTACCTGTAGTGTCTGT 58.406 47.619 12.42 0.00 38.44 3.41
3669 4188 2.557056 TGCAGTACCTGTAGTGTCTGTC 59.443 50.000 12.42 0.00 38.44 3.51
3670 4189 2.820787 GCAGTACCTGTAGTGTCTGTCT 59.179 50.000 12.42 0.00 38.44 3.41
3671 4190 3.256136 GCAGTACCTGTAGTGTCTGTCTT 59.744 47.826 12.42 0.00 38.44 3.01
3672 4191 4.616373 GCAGTACCTGTAGTGTCTGTCTTC 60.616 50.000 12.42 0.00 38.44 2.87
3673 4192 4.080687 AGTACCTGTAGTGTCTGTCTTCC 58.919 47.826 0.00 0.00 0.00 3.46
3674 4193 3.246416 ACCTGTAGTGTCTGTCTTCCT 57.754 47.619 0.00 0.00 0.00 3.36
3675 4194 3.577919 ACCTGTAGTGTCTGTCTTCCTT 58.422 45.455 0.00 0.00 0.00 3.36
3676 4195 3.967987 ACCTGTAGTGTCTGTCTTCCTTT 59.032 43.478 0.00 0.00 0.00 3.11
3677 4196 4.202264 ACCTGTAGTGTCTGTCTTCCTTTG 60.202 45.833 0.00 0.00 0.00 2.77
3678 4197 4.202264 CCTGTAGTGTCTGTCTTCCTTTGT 60.202 45.833 0.00 0.00 0.00 2.83
3679 4198 5.010719 CCTGTAGTGTCTGTCTTCCTTTGTA 59.989 44.000 0.00 0.00 0.00 2.41
3680 4199 6.295349 CCTGTAGTGTCTGTCTTCCTTTGTAT 60.295 42.308 0.00 0.00 0.00 2.29
3681 4200 6.455647 TGTAGTGTCTGTCTTCCTTTGTATG 58.544 40.000 0.00 0.00 0.00 2.39
3682 4201 5.552870 AGTGTCTGTCTTCCTTTGTATGT 57.447 39.130 0.00 0.00 0.00 2.29
3683 4202 6.665992 AGTGTCTGTCTTCCTTTGTATGTA 57.334 37.500 0.00 0.00 0.00 2.29
3684 4203 6.456501 AGTGTCTGTCTTCCTTTGTATGTAC 58.543 40.000 0.00 0.00 0.00 2.90
3685 4204 5.345202 GTGTCTGTCTTCCTTTGTATGTACG 59.655 44.000 0.00 0.00 0.00 3.67
3686 4205 5.010314 TGTCTGTCTTCCTTTGTATGTACGT 59.990 40.000 0.00 0.00 0.00 3.57
3687 4206 6.207221 TGTCTGTCTTCCTTTGTATGTACGTA 59.793 38.462 0.00 0.00 0.00 3.57
3688 4207 7.094075 TGTCTGTCTTCCTTTGTATGTACGTAT 60.094 37.037 0.00 0.00 0.00 3.06
3689 4208 8.400947 GTCTGTCTTCCTTTGTATGTACGTATA 58.599 37.037 0.00 0.00 0.00 1.47
3690 4209 9.128404 TCTGTCTTCCTTTGTATGTACGTATAT 57.872 33.333 9.87 9.87 0.00 0.86
3691 4210 9.395707 CTGTCTTCCTTTGTATGTACGTATATC 57.604 37.037 8.20 2.12 0.00 1.63
3692 4211 9.128404 TGTCTTCCTTTGTATGTACGTATATCT 57.872 33.333 8.20 0.00 0.00 1.98
3693 4212 9.962783 GTCTTCCTTTGTATGTACGTATATCTT 57.037 33.333 8.20 0.00 0.00 2.40
3709 4228 8.719648 ACGTATATCTTAAGAGACAAGATACCG 58.280 37.037 11.53 16.41 43.96 4.02
3710 4229 8.176365 CGTATATCTTAAGAGACAAGATACCGG 58.824 40.741 11.53 0.00 43.96 5.28
3711 4230 9.012161 GTATATCTTAAGAGACAAGATACCGGT 57.988 37.037 13.98 13.98 43.96 5.28
3712 4231 5.831702 TCTTAAGAGACAAGATACCGGTC 57.168 43.478 12.40 0.00 0.00 4.79
3713 4232 4.334759 TCTTAAGAGACAAGATACCGGTCG 59.665 45.833 12.40 0.00 36.68 4.79
3714 4233 0.739561 AGAGACAAGATACCGGTCGC 59.260 55.000 12.40 3.98 36.68 5.19
3715 4234 0.454600 GAGACAAGATACCGGTCGCA 59.545 55.000 12.40 0.00 36.68 5.10
3716 4235 0.172803 AGACAAGATACCGGTCGCAC 59.827 55.000 12.40 0.61 36.68 5.34
3717 4236 0.804933 GACAAGATACCGGTCGCACC 60.805 60.000 12.40 0.00 34.05 5.01
3718 4237 1.520787 CAAGATACCGGTCGCACCC 60.521 63.158 12.40 0.00 33.75 4.61
3719 4238 2.728435 AAGATACCGGTCGCACCCC 61.728 63.158 12.40 0.00 33.75 4.95
3720 4239 3.152400 GATACCGGTCGCACCCCT 61.152 66.667 12.40 0.00 33.75 4.79
3721 4240 2.686106 ATACCGGTCGCACCCCTT 60.686 61.111 12.40 0.00 33.75 3.95
3722 4241 2.918230 GATACCGGTCGCACCCCTTG 62.918 65.000 12.40 0.00 33.75 3.61
3724 4243 3.697747 CCGGTCGCACCCCTTGTA 61.698 66.667 0.00 0.00 33.75 2.41
3725 4244 2.433664 CGGTCGCACCCCTTGTAC 60.434 66.667 0.50 0.00 33.75 2.90
3726 4245 2.046604 GGTCGCACCCCTTGTACC 60.047 66.667 0.00 0.00 30.04 3.34
3727 4246 2.590114 GGTCGCACCCCTTGTACCT 61.590 63.158 0.00 0.00 33.04 3.08
3728 4247 1.259840 GGTCGCACCCCTTGTACCTA 61.260 60.000 0.00 0.00 33.04 3.08
3729 4248 0.828677 GTCGCACCCCTTGTACCTAT 59.171 55.000 0.00 0.00 0.00 2.57
3730 4249 2.034124 GTCGCACCCCTTGTACCTATA 58.966 52.381 0.00 0.00 0.00 1.31
3731 4250 2.631545 GTCGCACCCCTTGTACCTATAT 59.368 50.000 0.00 0.00 0.00 0.86
3732 4251 3.828451 GTCGCACCCCTTGTACCTATATA 59.172 47.826 0.00 0.00 0.00 0.86
3733 4252 4.465305 GTCGCACCCCTTGTACCTATATAT 59.535 45.833 0.00 0.00 0.00 0.86
3734 4253 5.653769 GTCGCACCCCTTGTACCTATATATA 59.346 44.000 0.00 0.00 0.00 0.86
3735 4254 6.323225 GTCGCACCCCTTGTACCTATATATAT 59.677 42.308 0.00 0.00 0.00 0.86
3736 4255 6.322969 TCGCACCCCTTGTACCTATATATATG 59.677 42.308 5.44 0.00 0.00 1.78
3737 4256 6.097839 CGCACCCCTTGTACCTATATATATGT 59.902 42.308 5.44 6.03 0.00 2.29
3738 4257 7.272978 GCACCCCTTGTACCTATATATATGTG 58.727 42.308 5.44 2.06 0.00 3.21
3739 4258 7.093024 GCACCCCTTGTACCTATATATATGTGT 60.093 40.741 5.44 5.10 0.00 3.72
3740 4259 8.475639 CACCCCTTGTACCTATATATATGTGTC 58.524 40.741 5.44 5.18 0.00 3.67
3741 4260 8.407438 ACCCCTTGTACCTATATATATGTGTCT 58.593 37.037 5.44 0.00 0.00 3.41
3742 4261 9.931698 CCCCTTGTACCTATATATATGTGTCTA 57.068 37.037 5.44 2.13 0.00 2.59
3747 4266 9.969001 TGTACCTATATATATGTGTCTAGTGCA 57.031 33.333 5.44 0.00 0.00 4.57
3749 4268 7.986562 ACCTATATATATGTGTCTAGTGCACG 58.013 38.462 12.01 0.00 39.53 5.34
3750 4269 7.827729 ACCTATATATATGTGTCTAGTGCACGA 59.172 37.037 12.01 5.11 39.53 4.35
3751 4270 8.841300 CCTATATATATGTGTCTAGTGCACGAT 58.159 37.037 12.01 0.00 39.53 3.73
3752 4271 9.871299 CTATATATATGTGTCTAGTGCACGATC 57.129 37.037 12.01 4.41 39.53 3.69
3753 4272 4.918810 ATATGTGTCTAGTGCACGATCA 57.081 40.909 12.01 7.05 39.53 2.92
3754 4273 3.592898 ATGTGTCTAGTGCACGATCAA 57.407 42.857 12.01 0.00 39.53 2.57
3755 4274 3.592898 TGTGTCTAGTGCACGATCAAT 57.407 42.857 12.01 0.00 39.53 2.57
3756 4275 3.253230 TGTGTCTAGTGCACGATCAATG 58.747 45.455 12.01 0.00 39.53 2.82
3757 4276 3.056891 TGTGTCTAGTGCACGATCAATGA 60.057 43.478 12.01 0.00 39.53 2.57
3758 4277 3.926527 GTGTCTAGTGCACGATCAATGAA 59.073 43.478 12.01 0.00 0.00 2.57
3759 4278 4.568359 GTGTCTAGTGCACGATCAATGAAT 59.432 41.667 12.01 0.00 0.00 2.57
3760 4279 4.805719 TGTCTAGTGCACGATCAATGAATC 59.194 41.667 12.01 0.00 0.00 2.52
3761 4280 4.805719 GTCTAGTGCACGATCAATGAATCA 59.194 41.667 12.01 0.00 0.00 2.57
3762 4281 5.464722 GTCTAGTGCACGATCAATGAATCAT 59.535 40.000 12.01 0.00 0.00 2.45
3763 4282 4.808077 AGTGCACGATCAATGAATCATC 57.192 40.909 12.01 0.00 0.00 2.92
3764 4283 4.449131 AGTGCACGATCAATGAATCATCT 58.551 39.130 12.01 0.00 0.00 2.90
3765 4284 5.604565 AGTGCACGATCAATGAATCATCTA 58.395 37.500 12.01 0.00 0.00 1.98
3766 4285 6.228995 AGTGCACGATCAATGAATCATCTAT 58.771 36.000 12.01 0.00 0.00 1.98
3767 4286 6.147328 AGTGCACGATCAATGAATCATCTATG 59.853 38.462 12.01 0.00 0.00 2.23
3768 4287 5.993441 TGCACGATCAATGAATCATCTATGT 59.007 36.000 0.00 0.00 0.00 2.29
3769 4288 7.116805 GTGCACGATCAATGAATCATCTATGTA 59.883 37.037 0.00 0.00 0.00 2.29
3770 4289 7.116805 TGCACGATCAATGAATCATCTATGTAC 59.883 37.037 0.00 0.00 0.00 2.90
3771 4290 7.330454 GCACGATCAATGAATCATCTATGTACT 59.670 37.037 0.00 0.00 0.00 2.73
3772 4291 9.846248 CACGATCAATGAATCATCTATGTACTA 57.154 33.333 0.00 0.00 0.00 1.82
3786 4305 9.987272 CATCTATGTACTAAATCATTCTCCACA 57.013 33.333 0.00 0.00 0.00 4.17
3788 4307 9.987272 TCTATGTACTAAATCATTCTCCACATG 57.013 33.333 0.00 0.00 0.00 3.21
3789 4308 9.212641 CTATGTACTAAATCATTCTCCACATGG 57.787 37.037 0.00 0.00 0.00 3.66
3790 4309 6.957631 TGTACTAAATCATTCTCCACATGGT 58.042 36.000 0.00 0.00 36.34 3.55
3791 4310 8.084985 TGTACTAAATCATTCTCCACATGGTA 57.915 34.615 0.00 0.00 36.34 3.25
3792 4311 8.713971 TGTACTAAATCATTCTCCACATGGTAT 58.286 33.333 0.00 0.00 36.34 2.73
3793 4312 9.209175 GTACTAAATCATTCTCCACATGGTATC 57.791 37.037 0.00 0.00 36.34 2.24
3794 4313 7.805163 ACTAAATCATTCTCCACATGGTATCA 58.195 34.615 0.00 0.00 36.34 2.15
3795 4314 7.935755 ACTAAATCATTCTCCACATGGTATCAG 59.064 37.037 0.00 0.00 36.34 2.90
3796 4315 5.901413 ATCATTCTCCACATGGTATCAGT 57.099 39.130 0.00 0.00 36.34 3.41
3797 4316 5.698741 TCATTCTCCACATGGTATCAGTT 57.301 39.130 0.00 0.00 36.34 3.16
3798 4317 6.065976 TCATTCTCCACATGGTATCAGTTT 57.934 37.500 0.00 0.00 36.34 2.66
3799 4318 6.484288 TCATTCTCCACATGGTATCAGTTTT 58.516 36.000 0.00 0.00 36.34 2.43
3800 4319 6.947733 TCATTCTCCACATGGTATCAGTTTTT 59.052 34.615 0.00 0.00 36.34 1.94
3820 4339 5.684550 TTTTAAGTTTTCCTCTCGCTTCC 57.315 39.130 0.00 0.00 0.00 3.46
3821 4340 1.797025 AAGTTTTCCTCTCGCTTCCG 58.203 50.000 0.00 0.00 0.00 4.30
3822 4341 0.670854 AGTTTTCCTCTCGCTTCCGC 60.671 55.000 0.00 0.00 0.00 5.54
3823 4342 1.375523 TTTTCCTCTCGCTTCCGCC 60.376 57.895 0.00 0.00 0.00 6.13
3824 4343 3.642778 TTTCCTCTCGCTTCCGCCG 62.643 63.158 0.00 0.00 0.00 6.46
3841 4360 4.664677 GCCGTCGTCTGTGCACCT 62.665 66.667 15.69 0.00 0.00 4.00
3842 4361 2.430921 CCGTCGTCTGTGCACCTC 60.431 66.667 15.69 3.67 0.00 3.85
3843 4362 2.645567 CGTCGTCTGTGCACCTCT 59.354 61.111 15.69 0.00 0.00 3.69
3844 4363 1.442857 CGTCGTCTGTGCACCTCTC 60.443 63.158 15.69 1.42 0.00 3.20
3845 4364 1.442857 GTCGTCTGTGCACCTCTCG 60.443 63.158 15.69 13.57 0.00 4.04
3846 4365 2.807045 CGTCTGTGCACCTCTCGC 60.807 66.667 15.69 0.00 0.00 5.03
3847 4366 2.807045 GTCTGTGCACCTCTCGCG 60.807 66.667 15.69 0.00 0.00 5.87
3848 4367 3.295273 TCTGTGCACCTCTCGCGT 61.295 61.111 15.69 0.00 0.00 6.01
3849 4368 2.807045 CTGTGCACCTCTCGCGTC 60.807 66.667 15.69 0.00 0.00 5.19
3850 4369 4.700365 TGTGCACCTCTCGCGTCG 62.700 66.667 15.69 0.00 0.00 5.12
3870 4389 3.933722 CGCCGCTCCTGATCCCAT 61.934 66.667 0.00 0.00 0.00 4.00
3871 4390 2.031768 GCCGCTCCTGATCCCATC 59.968 66.667 0.00 0.00 0.00 3.51
3872 4391 2.746359 CCGCTCCTGATCCCATCC 59.254 66.667 0.00 0.00 0.00 3.51
3873 4392 2.746359 CGCTCCTGATCCCATCCC 59.254 66.667 0.00 0.00 0.00 3.85
3874 4393 2.746359 GCTCCTGATCCCATCCCG 59.254 66.667 0.00 0.00 0.00 5.14
3875 4394 2.143419 GCTCCTGATCCCATCCCGT 61.143 63.158 0.00 0.00 0.00 5.28
3876 4395 1.700042 GCTCCTGATCCCATCCCGTT 61.700 60.000 0.00 0.00 0.00 4.44
3877 4396 0.394565 CTCCTGATCCCATCCCGTTC 59.605 60.000 0.00 0.00 0.00 3.95
3878 4397 1.054406 TCCTGATCCCATCCCGTTCC 61.054 60.000 0.00 0.00 0.00 3.62
3879 4398 1.451936 CTGATCCCATCCCGTTCCC 59.548 63.158 0.00 0.00 0.00 3.97
3880 4399 2.383245 CTGATCCCATCCCGTTCCCG 62.383 65.000 0.00 0.00 0.00 5.14
3881 4400 3.826926 GATCCCATCCCGTTCCCGC 62.827 68.421 0.00 0.00 0.00 6.13
3902 4421 4.880537 CAGCCTCGCTACCCGCTG 62.881 72.222 0.00 0.00 42.42 5.18
3920 4439 4.057428 CCGCTCCCGATCCCGATC 62.057 72.222 0.00 0.00 38.22 3.69
3921 4440 4.057428 CGCTCCCGATCCCGATCC 62.057 72.222 0.00 0.00 38.22 3.36
3922 4441 2.917751 GCTCCCGATCCCGATCCA 60.918 66.667 0.00 0.00 38.22 3.41
3923 4442 2.507854 GCTCCCGATCCCGATCCAA 61.508 63.158 0.00 0.00 38.22 3.53
3924 4443 1.367840 CTCCCGATCCCGATCCAAC 59.632 63.158 0.00 0.00 38.22 3.77
3925 4444 1.382009 TCCCGATCCCGATCCAACA 60.382 57.895 0.00 0.00 38.22 3.33
3926 4445 1.227556 CCCGATCCCGATCCAACAC 60.228 63.158 0.00 0.00 38.22 3.32
3927 4446 1.227556 CCGATCCCGATCCAACACC 60.228 63.158 0.00 0.00 38.22 4.16
3928 4447 1.686325 CCGATCCCGATCCAACACCT 61.686 60.000 0.00 0.00 38.22 4.00
3929 4448 0.530650 CGATCCCGATCCAACACCTG 60.531 60.000 0.00 0.00 38.22 4.00
3930 4449 0.815615 GATCCCGATCCAACACCTGC 60.816 60.000 0.00 0.00 31.76 4.85
3931 4450 2.270874 ATCCCGATCCAACACCTGCC 62.271 60.000 0.00 0.00 0.00 4.85
3932 4451 2.671070 CCGATCCAACACCTGCCT 59.329 61.111 0.00 0.00 0.00 4.75
3933 4452 1.450312 CCGATCCAACACCTGCCTC 60.450 63.158 0.00 0.00 0.00 4.70
3934 4453 1.811266 CGATCCAACACCTGCCTCG 60.811 63.158 0.00 0.00 0.00 4.63
3935 4454 1.596934 GATCCAACACCTGCCTCGA 59.403 57.895 0.00 0.00 0.00 4.04
3936 4455 0.179000 GATCCAACACCTGCCTCGAT 59.821 55.000 0.00 0.00 0.00 3.59
3937 4456 0.179000 ATCCAACACCTGCCTCGATC 59.821 55.000 0.00 0.00 0.00 3.69
3938 4457 1.811266 CCAACACCTGCCTCGATCG 60.811 63.158 9.36 9.36 0.00 3.69
3939 4458 2.125512 AACACCTGCCTCGATCGC 60.126 61.111 11.09 0.00 0.00 4.58
3940 4459 3.665675 AACACCTGCCTCGATCGCC 62.666 63.158 11.09 1.64 0.00 5.54
3941 4460 4.899239 CACCTGCCTCGATCGCCC 62.899 72.222 11.09 1.26 0.00 6.13
3943 4462 3.933722 CCTGCCTCGATCGCCCAT 61.934 66.667 11.09 0.00 0.00 4.00
3944 4463 2.356793 CTGCCTCGATCGCCCATC 60.357 66.667 11.09 0.00 0.00 3.51
3945 4464 3.153781 TGCCTCGATCGCCCATCA 61.154 61.111 11.09 0.84 0.00 3.07
3946 4465 2.663188 GCCTCGATCGCCCATCAC 60.663 66.667 11.09 0.00 0.00 3.06
3947 4466 2.355126 CCTCGATCGCCCATCACG 60.355 66.667 11.09 0.00 0.00 4.35
3948 4467 3.032609 CTCGATCGCCCATCACGC 61.033 66.667 11.09 0.00 0.00 5.34
3949 4468 3.773262 CTCGATCGCCCATCACGCA 62.773 63.158 11.09 0.00 0.00 5.24
3950 4469 3.630148 CGATCGCCCATCACGCAC 61.630 66.667 0.26 0.00 0.00 5.34
3951 4470 3.272334 GATCGCCCATCACGCACC 61.272 66.667 0.00 0.00 0.00 5.01
3952 4471 4.856801 ATCGCCCATCACGCACCC 62.857 66.667 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 7.371159 TGATATTGGTGTAACATTCGCAAAAA 58.629 30.769 0.00 0.00 39.98 1.94
12 13 6.914259 TGATATTGGTGTAACATTCGCAAAA 58.086 32.000 0.00 0.00 39.98 2.44
13 14 6.502136 TGATATTGGTGTAACATTCGCAAA 57.498 33.333 0.00 0.00 39.98 3.68
14 15 6.238621 GGATGATATTGGTGTAACATTCGCAA 60.239 38.462 0.00 0.00 39.98 4.85
15 16 5.238432 GGATGATATTGGTGTAACATTCGCA 59.762 40.000 0.00 0.00 39.98 5.10
16 17 5.614668 CGGATGATATTGGTGTAACATTCGC 60.615 44.000 0.00 0.00 39.98 4.70
17 18 5.694458 TCGGATGATATTGGTGTAACATTCG 59.306 40.000 0.00 0.00 39.98 3.34
18 19 6.706270 ACTCGGATGATATTGGTGTAACATTC 59.294 38.462 0.00 0.00 39.98 2.67
19 20 6.591935 ACTCGGATGATATTGGTGTAACATT 58.408 36.000 0.00 0.00 39.98 2.71
20 21 6.174720 ACTCGGATGATATTGGTGTAACAT 57.825 37.500 0.00 0.00 39.98 2.71
21 22 5.597806 GACTCGGATGATATTGGTGTAACA 58.402 41.667 0.00 0.00 39.98 2.41
22 23 4.680110 CGACTCGGATGATATTGGTGTAAC 59.320 45.833 0.00 0.00 0.00 2.50
23 24 4.794981 GCGACTCGGATGATATTGGTGTAA 60.795 45.833 0.00 0.00 0.00 2.41
24 25 3.305131 GCGACTCGGATGATATTGGTGTA 60.305 47.826 0.00 0.00 0.00 2.90
25 26 2.545952 GCGACTCGGATGATATTGGTGT 60.546 50.000 0.00 0.00 0.00 4.16
26 27 2.061773 GCGACTCGGATGATATTGGTG 58.938 52.381 0.00 0.00 0.00 4.17
27 28 1.964223 AGCGACTCGGATGATATTGGT 59.036 47.619 0.00 0.00 0.00 3.67
34 35 2.044352 TCCCAGCGACTCGGATGA 60.044 61.111 0.00 0.00 0.00 2.92
39 40 2.279120 GATGCTCCCAGCGACTCG 60.279 66.667 0.00 0.00 46.26 4.18
107 109 1.874466 GTGCTAGAGACTTCGCGGC 60.874 63.158 6.13 0.00 0.00 6.53
286 450 2.301296 CAGAGAGAGAATGTGTGGTGGT 59.699 50.000 0.00 0.00 0.00 4.16
328 492 4.676586 GTTGGCCGAACGCGTTGG 62.677 66.667 31.89 27.96 38.94 3.77
338 502 1.508088 GCCTCATCTTTGTTGGCCG 59.492 57.895 0.00 0.00 37.49 6.13
351 515 3.379445 GACGGGGAGTTCGCCTCA 61.379 66.667 12.65 0.00 45.75 3.86
424 592 1.432270 CTCTTTTCCGGCCAGCGATC 61.432 60.000 2.24 0.00 0.00 3.69
425 593 1.450312 CTCTTTTCCGGCCAGCGAT 60.450 57.895 2.24 0.00 0.00 4.58
427 595 3.127533 CCTCTTTTCCGGCCAGCG 61.128 66.667 2.24 0.00 0.00 5.18
430 598 1.152652 TTTGCCTCTTTTCCGGCCA 60.153 52.632 2.24 0.00 45.71 5.36
431 599 1.289066 GTTTGCCTCTTTTCCGGCC 59.711 57.895 0.00 0.00 45.71 6.13
433 601 1.328279 AAGGTTTGCCTCTTTTCCGG 58.672 50.000 0.00 0.00 46.33 5.14
434 602 3.128764 GGATAAGGTTTGCCTCTTTTCCG 59.871 47.826 0.00 0.00 46.33 4.30
435 603 3.447586 GGGATAAGGTTTGCCTCTTTTCC 59.552 47.826 0.00 0.00 46.33 3.13
440 608 3.701664 CTTTGGGATAAGGTTTGCCTCT 58.298 45.455 0.00 0.00 46.33 3.69
441 609 2.166459 GCTTTGGGATAAGGTTTGCCTC 59.834 50.000 0.00 0.00 46.33 4.70
443 611 1.207089 GGCTTTGGGATAAGGTTTGCC 59.793 52.381 0.00 0.00 0.00 4.52
444 612 1.135112 CGGCTTTGGGATAAGGTTTGC 60.135 52.381 0.00 0.00 0.00 3.68
445 613 2.094752 CACGGCTTTGGGATAAGGTTTG 60.095 50.000 0.00 0.00 0.00 2.93
446 614 2.167662 CACGGCTTTGGGATAAGGTTT 58.832 47.619 0.00 0.00 0.00 3.27
447 615 1.074889 ACACGGCTTTGGGATAAGGTT 59.925 47.619 0.00 0.00 0.00 3.50
448 616 0.696501 ACACGGCTTTGGGATAAGGT 59.303 50.000 0.00 0.00 0.00 3.50
449 617 1.094785 CACACGGCTTTGGGATAAGG 58.905 55.000 0.00 0.00 0.00 2.69
450 618 2.107950 TCACACGGCTTTGGGATAAG 57.892 50.000 0.00 0.00 0.00 1.73
451 619 2.432444 CTTCACACGGCTTTGGGATAA 58.568 47.619 0.00 0.00 0.00 1.75
452 620 1.339631 CCTTCACACGGCTTTGGGATA 60.340 52.381 0.00 0.00 0.00 2.59
453 621 0.609131 CCTTCACACGGCTTTGGGAT 60.609 55.000 0.00 0.00 0.00 3.85
454 622 1.228124 CCTTCACACGGCTTTGGGA 60.228 57.895 0.00 0.00 0.00 4.37
455 623 2.919494 GCCTTCACACGGCTTTGGG 61.919 63.158 0.00 0.00 44.17 4.12
456 624 2.644992 GCCTTCACACGGCTTTGG 59.355 61.111 0.00 0.00 44.17 3.28
457 625 2.133742 CTGGCCTTCACACGGCTTTG 62.134 60.000 3.32 0.00 46.73 2.77
514 722 2.177394 ATTGATGTGCGTGTGGTGTA 57.823 45.000 0.00 0.00 0.00 2.90
590 799 2.572149 TACTACCGCCCGTTGTGCA 61.572 57.895 0.00 0.00 32.43 4.57
602 820 2.769663 TGTGGATGGATGTGGTACTACC 59.230 50.000 6.93 0.00 39.22 3.18
665 892 4.973168 TCATTCCTGTCTTGTTTAGTGCT 58.027 39.130 0.00 0.00 0.00 4.40
666 893 5.886960 ATCATTCCTGTCTTGTTTAGTGC 57.113 39.130 0.00 0.00 0.00 4.40
667 894 6.207417 ACCAATCATTCCTGTCTTGTTTAGTG 59.793 38.462 0.00 0.00 0.00 2.74
668 895 6.207417 CACCAATCATTCCTGTCTTGTTTAGT 59.793 38.462 0.00 0.00 0.00 2.24
669 896 6.349611 CCACCAATCATTCCTGTCTTGTTTAG 60.350 42.308 0.00 0.00 0.00 1.85
670 897 5.476599 CCACCAATCATTCCTGTCTTGTTTA 59.523 40.000 0.00 0.00 0.00 2.01
671 898 4.281688 CCACCAATCATTCCTGTCTTGTTT 59.718 41.667 0.00 0.00 0.00 2.83
673 900 3.074390 TCCACCAATCATTCCTGTCTTGT 59.926 43.478 0.00 0.00 0.00 3.16
674 901 3.689347 TCCACCAATCATTCCTGTCTTG 58.311 45.455 0.00 0.00 0.00 3.02
675 902 3.308688 CCTCCACCAATCATTCCTGTCTT 60.309 47.826 0.00 0.00 0.00 3.01
716 944 0.524414 GAAAACTACCGCGGCCAAAT 59.476 50.000 28.58 7.96 0.00 2.32
725 953 0.037605 ACGGCCAGAGAAAACTACCG 60.038 55.000 2.24 0.00 41.43 4.02
729 957 1.594331 GTTGACGGCCAGAGAAAACT 58.406 50.000 2.24 0.00 0.00 2.66
760 1055 2.077821 GAAGGAGATCGACGGGGCTC 62.078 65.000 0.00 0.00 0.00 4.70
824 1120 1.909781 GAGGGGTGGTCGTGGTACA 60.910 63.158 0.00 0.00 0.00 2.90
825 1121 1.602327 GAGAGGGGTGGTCGTGGTAC 61.602 65.000 0.00 0.00 0.00 3.34
826 1122 1.304713 GAGAGGGGTGGTCGTGGTA 60.305 63.158 0.00 0.00 0.00 3.25
832 1128 1.691434 GATGAGATGAGAGGGGTGGTC 59.309 57.143 0.00 0.00 0.00 4.02
854 1152 2.739932 CGGGACTTGTCTAGCTTGGATG 60.740 54.545 0.00 0.00 0.00 3.51
983 1288 1.418334 CATGGACGATCTCCCTTCCT 58.582 55.000 8.25 0.00 38.49 3.36
984 1289 0.394565 CCATGGACGATCTCCCTTCC 59.605 60.000 5.56 0.00 38.49 3.46
985 1290 1.342819 CTCCATGGACGATCTCCCTTC 59.657 57.143 11.44 0.00 38.49 3.46
986 1291 1.062886 TCTCCATGGACGATCTCCCTT 60.063 52.381 11.44 0.00 38.49 3.95
1124 1457 0.798776 CTTCTAACAAGCCACCGCAG 59.201 55.000 0.00 0.00 37.52 5.18
1127 1460 6.436843 AATTAATCTTCTAACAAGCCACCG 57.563 37.500 0.00 0.00 0.00 4.94
1169 1502 4.248842 TCCCCCTGCACACACACG 62.249 66.667 0.00 0.00 0.00 4.49
1170 1503 2.281761 CTCCCCCTGCACACACAC 60.282 66.667 0.00 0.00 0.00 3.82
1171 1504 3.569210 CCTCCCCCTGCACACACA 61.569 66.667 0.00 0.00 0.00 3.72
1172 1505 4.351054 CCCTCCCCCTGCACACAC 62.351 72.222 0.00 0.00 0.00 3.82
1469 1805 1.815840 GAAGGCGAGGCTGCTTACC 60.816 63.158 0.00 0.00 34.52 2.85
1517 1861 4.261197 GCGGAATCCATGACTTATCAAACC 60.261 45.833 0.00 0.00 38.69 3.27
1545 1891 3.618019 CGGGAATCCTCTTTTGACCGTTA 60.618 47.826 0.00 0.00 35.67 3.18
1589 1935 7.601073 AGTTTGCTTTTTCTTTCTTTTCCAG 57.399 32.000 0.00 0.00 0.00 3.86
1608 1962 5.163513 CGGATGGAAATGGAGAAAAGTTTG 58.836 41.667 0.00 0.00 0.00 2.93
1626 1980 1.134699 TCAGCTAAGAACAGCCGGATG 60.135 52.381 20.26 20.26 42.84 3.51
1629 1983 0.741221 GGTCAGCTAAGAACAGCCGG 60.741 60.000 0.00 0.00 42.84 6.13
1657 2014 7.491696 AGAAAGTACGAATCTTTATGCTACCAC 59.508 37.037 0.00 0.00 35.62 4.16
1658 2015 7.491372 CAGAAAGTACGAATCTTTATGCTACCA 59.509 37.037 10.93 0.00 37.33 3.25
1659 2016 7.842484 CAGAAAGTACGAATCTTTATGCTACC 58.158 38.462 10.93 0.00 37.33 3.18
1676 2033 9.480053 AAAGTACAGTAATTAACGCAGAAAGTA 57.520 29.630 0.00 0.00 0.00 2.24
1720 2086 7.599245 AGCAAAGAATACTATACTGTTATCCGC 59.401 37.037 0.00 0.00 0.00 5.54
1721 2087 9.477484 AAGCAAAGAATACTATACTGTTATCCG 57.523 33.333 0.00 0.00 0.00 4.18
1726 2098 9.284968 ACAACAAGCAAAGAATACTATACTGTT 57.715 29.630 0.00 0.00 0.00 3.16
1727 2099 8.848474 ACAACAAGCAAAGAATACTATACTGT 57.152 30.769 0.00 0.00 0.00 3.55
1735 2107 4.976116 AGCGAAACAACAAGCAAAGAATAC 59.024 37.500 0.00 0.00 0.00 1.89
1756 2128 1.127582 CTGCTGTTCGCTAACTTGAGC 59.872 52.381 2.53 4.11 40.11 4.26
1757 2129 1.127582 GCTGCTGTTCGCTAACTTGAG 59.872 52.381 2.53 0.00 40.11 3.02
1758 2130 1.148310 GCTGCTGTTCGCTAACTTGA 58.852 50.000 2.53 0.00 40.11 3.02
1759 2131 0.867746 TGCTGCTGTTCGCTAACTTG 59.132 50.000 0.00 0.00 40.11 3.16
1760 2132 1.151668 CTGCTGCTGTTCGCTAACTT 58.848 50.000 0.00 0.00 40.11 2.66
1761 2133 1.294659 GCTGCTGCTGTTCGCTAACT 61.295 55.000 8.53 0.00 40.11 2.24
1762 2134 1.133458 GCTGCTGCTGTTCGCTAAC 59.867 57.895 8.53 0.00 40.11 2.34
1763 2135 2.034879 GGCTGCTGCTGTTCGCTAA 61.035 57.895 15.64 0.00 40.11 3.09
1764 2136 2.434884 GGCTGCTGCTGTTCGCTA 60.435 61.111 15.64 0.00 40.11 4.26
1765 2137 3.914579 ATGGCTGCTGCTGTTCGCT 62.915 57.895 15.64 0.00 40.11 4.93
1766 2138 3.437795 ATGGCTGCTGCTGTTCGC 61.438 61.111 15.64 0.00 39.59 4.70
1767 2139 2.483745 CATGGCTGCTGCTGTTCG 59.516 61.111 15.64 0.00 39.59 3.95
1788 2160 2.032681 AGTTTGACCCGGCAGAGC 59.967 61.111 0.00 0.00 0.00 4.09
1795 2167 4.584688 GGGTACGAGTTTGACCCG 57.415 61.111 0.00 0.00 43.41 5.28
1811 2183 2.393764 GTCAAATTTCAGTGCGTTGGG 58.606 47.619 0.00 0.00 0.00 4.12
1940 2315 7.407337 AGTTTCACTCGTGTGTTCTTTATTTC 58.593 34.615 16.49 0.00 44.14 2.17
1944 2319 7.830940 TTTAGTTTCACTCGTGTGTTCTTTA 57.169 32.000 16.49 3.37 44.14 1.85
1953 2328 8.279800 TGTGATACAAATTTAGTTTCACTCGTG 58.720 33.333 25.34 5.26 43.64 4.35
1984 2359 6.148480 CAGGTAAATGCAGAGTAATGCCTATC 59.852 42.308 0.00 0.00 45.91 2.08
1985 2360 6.000219 CAGGTAAATGCAGAGTAATGCCTAT 59.000 40.000 0.00 0.00 45.91 2.57
1986 2361 5.130311 TCAGGTAAATGCAGAGTAATGCCTA 59.870 40.000 0.00 0.00 45.91 3.93
1989 2364 5.278169 CCATCAGGTAAATGCAGAGTAATGC 60.278 44.000 0.00 0.00 46.68 3.56
1990 2365 6.309712 CCATCAGGTAAATGCAGAGTAATG 57.690 41.667 0.00 0.00 0.00 1.90
2014 2404 1.233019 GCACTTGCAGCTCAGAAGAA 58.767 50.000 0.00 0.00 41.59 2.52
2069 2471 4.386652 GCGGTTCGACTTTTAGATGTTGTA 59.613 41.667 0.00 0.00 0.00 2.41
2070 2472 3.185797 GCGGTTCGACTTTTAGATGTTGT 59.814 43.478 0.00 0.00 0.00 3.32
2071 2473 3.424433 GGCGGTTCGACTTTTAGATGTTG 60.424 47.826 0.00 0.00 0.00 3.33
2076 2478 1.010419 GCGGCGGTTCGACTTTTAGA 61.010 55.000 9.78 0.00 29.68 2.10
2078 2480 2.028733 GGCGGCGGTTCGACTTTTA 61.029 57.895 9.78 0.00 34.89 1.52
2105 2507 6.517605 TGCTTAATCATACACTATTACCGCA 58.482 36.000 0.00 0.00 0.00 5.69
2107 2509 8.589335 ACTTGCTTAATCATACACTATTACCG 57.411 34.615 0.00 0.00 0.00 4.02
2135 2537 0.702902 AGGGCCCATCATCATCATCC 59.297 55.000 27.56 0.00 0.00 3.51
2336 2750 9.666626 GAGGCATACACATATCGAGTAATATAC 57.333 37.037 0.00 0.00 0.00 1.47
2364 2781 4.070009 TCGCTTTATCGATACAGCCTCTA 58.930 43.478 28.85 14.81 33.63 2.43
2366 2783 2.981140 GTCGCTTTATCGATACAGCCTC 59.019 50.000 28.85 20.57 40.84 4.70
2375 2792 4.464112 CATATCAGTCGTCGCTTTATCGA 58.536 43.478 0.00 0.00 35.95 3.59
2387 2804 6.625362 AGGACATACTAATGCATATCAGTCG 58.375 40.000 0.00 2.30 36.50 4.18
2390 2807 7.332926 GGACAAGGACATACTAATGCATATCAG 59.667 40.741 0.00 0.04 36.50 2.90
2394 2811 6.493189 TGGACAAGGACATACTAATGCATA 57.507 37.500 0.00 0.00 36.50 3.14
2395 2812 5.372343 TGGACAAGGACATACTAATGCAT 57.628 39.130 0.00 0.00 36.50 3.96
2396 2813 4.835284 TGGACAAGGACATACTAATGCA 57.165 40.909 0.00 0.00 36.50 3.96
2397 2814 4.516698 CCATGGACAAGGACATACTAATGC 59.483 45.833 5.56 0.00 36.50 3.56
2401 2818 4.002256 TCCCATGGACAAGGACATACTA 57.998 45.455 15.22 0.00 0.00 1.82
2470 2887 7.012421 GCCCGACTCATTATTAGTTCATTCTTT 59.988 37.037 0.00 0.00 0.00 2.52
2471 2888 6.483640 GCCCGACTCATTATTAGTTCATTCTT 59.516 38.462 0.00 0.00 0.00 2.52
2472 2889 5.992217 GCCCGACTCATTATTAGTTCATTCT 59.008 40.000 0.00 0.00 0.00 2.40
2473 2890 5.179555 GGCCCGACTCATTATTAGTTCATTC 59.820 44.000 0.00 0.00 0.00 2.67
2489 2906 2.754658 CTACCGACTGGCCCGACT 60.755 66.667 0.00 0.00 39.70 4.18
2496 2913 2.484947 GGGAAATTAGCCTACCGACTGG 60.485 54.545 0.00 0.00 42.84 4.00
2646 3068 9.941664 CTTTGTCATAAGGAAAGCTAATGTATG 57.058 33.333 0.00 0.00 0.00 2.39
2733 3162 4.498520 ACGCCTCACAGGATCGCG 62.499 66.667 0.00 0.00 43.44 5.87
2736 3165 2.583593 GCGACGCCTCACAGGATC 60.584 66.667 9.14 0.00 37.67 3.36
2805 3238 8.734386 AGCAAGAATATAGCATGCCTATTTAAC 58.266 33.333 15.66 6.84 37.84 2.01
2808 3241 6.718454 ACAGCAAGAATATAGCATGCCTATTT 59.282 34.615 15.66 3.49 37.84 1.40
2811 3244 5.233083 ACAGCAAGAATATAGCATGCCTA 57.767 39.130 15.66 7.08 37.73 3.93
2813 3246 5.645067 TGATACAGCAAGAATATAGCATGCC 59.355 40.000 15.66 0.00 37.73 4.40
2814 3247 6.402983 GGTGATACAGCAAGAATATAGCATGC 60.403 42.308 10.51 10.51 37.28 4.06
2815 3248 6.877855 AGGTGATACAGCAAGAATATAGCATG 59.122 38.462 0.00 0.00 33.95 4.06
2816 3249 6.877855 CAGGTGATACAGCAAGAATATAGCAT 59.122 38.462 0.00 0.00 33.95 3.79
2880 3340 5.299148 CATCAGCAAACAAATTCCTTCCAA 58.701 37.500 0.00 0.00 0.00 3.53
2898 3358 1.134159 CCTCTTCCTTCCCTGCATCAG 60.134 57.143 0.00 0.00 0.00 2.90
3088 3551 2.251893 CGTCTCGTTCTCTAAACAGGC 58.748 52.381 0.00 0.00 0.00 4.85
3180 3644 3.749609 CGCATATCAGATGCCATTTCTCA 59.250 43.478 0.00 0.00 41.71 3.27
3196 3660 3.631250 AGGGTGTCCAAAATTCGCATAT 58.369 40.909 0.00 0.00 34.83 1.78
3201 3665 4.457603 TGATGTAAGGGTGTCCAAAATTCG 59.542 41.667 0.00 0.00 34.83 3.34
3202 3666 5.975693 TGATGTAAGGGTGTCCAAAATTC 57.024 39.130 0.00 0.00 34.83 2.17
3210 3674 2.488153 GCCAGTTTGATGTAAGGGTGTC 59.512 50.000 0.00 0.00 0.00 3.67
3341 3846 1.424240 CAGCTTCAGCATGCAGTCG 59.576 57.895 21.98 8.59 45.16 4.18
3356 3861 1.759445 TCTCCAGGACTAAGATGCAGC 59.241 52.381 0.00 0.00 0.00 5.25
3362 3867 4.416516 TGACACATTCTCCAGGACTAAGA 58.583 43.478 0.00 0.00 0.00 2.10
3369 3874 4.074259 TGTTTGATGACACATTCTCCAGG 58.926 43.478 0.00 0.00 0.00 4.45
3406 3911 0.536006 GCTCTCAGCAGTGGGTTTGT 60.536 55.000 0.00 0.00 41.89 2.83
3426 3931 1.154016 CCGTCACGTGAGATTCGCT 60.154 57.895 20.73 0.00 0.00 4.93
3468 3973 1.000163 AGCATCGAGGCCGTAATACAG 60.000 52.381 19.85 0.00 37.05 2.74
3470 3975 2.150397 AAGCATCGAGGCCGTAATAC 57.850 50.000 19.85 0.00 37.05 1.89
3474 3979 0.804544 CGAAAAGCATCGAGGCCGTA 60.805 55.000 19.85 0.00 45.48 4.02
3616 4135 6.264744 ACGCAGACCTAAGTACATGTATACAT 59.735 38.462 12.75 12.75 36.96 2.29
3617 4136 5.591472 ACGCAGACCTAAGTACATGTATACA 59.409 40.000 9.18 8.27 0.00 2.29
3618 4137 6.069684 ACGCAGACCTAAGTACATGTATAC 57.930 41.667 9.18 0.00 0.00 1.47
3619 4138 6.704289 AACGCAGACCTAAGTACATGTATA 57.296 37.500 9.18 0.00 0.00 1.47
3620 4139 5.593679 AACGCAGACCTAAGTACATGTAT 57.406 39.130 9.18 0.00 0.00 2.29
3621 4140 5.395682 AAACGCAGACCTAAGTACATGTA 57.604 39.130 0.08 0.08 0.00 2.29
3622 4141 3.955650 AACGCAGACCTAAGTACATGT 57.044 42.857 2.69 2.69 0.00 3.21
3623 4142 3.303495 CGAAACGCAGACCTAAGTACATG 59.697 47.826 0.00 0.00 0.00 3.21
3624 4143 3.057033 ACGAAACGCAGACCTAAGTACAT 60.057 43.478 0.00 0.00 0.00 2.29
3625 4144 2.294233 ACGAAACGCAGACCTAAGTACA 59.706 45.455 0.00 0.00 0.00 2.90
3626 4145 2.938869 ACGAAACGCAGACCTAAGTAC 58.061 47.619 0.00 0.00 0.00 2.73
3627 4146 4.665212 CATACGAAACGCAGACCTAAGTA 58.335 43.478 0.00 0.00 0.00 2.24
3628 4147 3.508762 CATACGAAACGCAGACCTAAGT 58.491 45.455 0.00 0.00 0.00 2.24
3629 4148 2.281762 GCATACGAAACGCAGACCTAAG 59.718 50.000 0.00 0.00 0.00 2.18
3630 4149 2.264813 GCATACGAAACGCAGACCTAA 58.735 47.619 0.00 0.00 0.00 2.69
3631 4150 1.202817 TGCATACGAAACGCAGACCTA 59.797 47.619 0.00 0.00 0.00 3.08
3632 4151 0.037697 TGCATACGAAACGCAGACCT 60.038 50.000 0.00 0.00 0.00 3.85
3633 4152 2.451693 TGCATACGAAACGCAGACC 58.548 52.632 0.00 0.00 0.00 3.85
3637 4156 1.067425 AGGTACTGCATACGAAACGCA 60.067 47.619 0.00 0.00 37.18 5.24
3638 4157 1.636988 AGGTACTGCATACGAAACGC 58.363 50.000 0.00 0.00 37.18 4.84
3651 4170 4.080687 GGAAGACAGACACTACAGGTACT 58.919 47.826 0.00 0.00 43.88 2.73
3652 4171 4.080687 AGGAAGACAGACACTACAGGTAC 58.919 47.826 0.00 0.00 0.00 3.34
3653 4172 4.383931 AGGAAGACAGACACTACAGGTA 57.616 45.455 0.00 0.00 0.00 3.08
3654 4173 3.246416 AGGAAGACAGACACTACAGGT 57.754 47.619 0.00 0.00 0.00 4.00
3655 4174 4.202264 ACAAAGGAAGACAGACACTACAGG 60.202 45.833 0.00 0.00 0.00 4.00
3656 4175 4.950050 ACAAAGGAAGACAGACACTACAG 58.050 43.478 0.00 0.00 0.00 2.74
3657 4176 6.041637 ACATACAAAGGAAGACAGACACTACA 59.958 38.462 0.00 0.00 0.00 2.74
3658 4177 6.456501 ACATACAAAGGAAGACAGACACTAC 58.543 40.000 0.00 0.00 0.00 2.73
3659 4178 6.665992 ACATACAAAGGAAGACAGACACTA 57.334 37.500 0.00 0.00 0.00 2.74
3660 4179 5.552870 ACATACAAAGGAAGACAGACACT 57.447 39.130 0.00 0.00 0.00 3.55
3661 4180 5.345202 CGTACATACAAAGGAAGACAGACAC 59.655 44.000 0.00 0.00 0.00 3.67
3662 4181 5.010314 ACGTACATACAAAGGAAGACAGACA 59.990 40.000 0.00 0.00 0.00 3.41
3663 4182 5.467705 ACGTACATACAAAGGAAGACAGAC 58.532 41.667 0.00 0.00 0.00 3.51
3664 4183 5.717078 ACGTACATACAAAGGAAGACAGA 57.283 39.130 0.00 0.00 0.00 3.41
3665 4184 9.395707 GATATACGTACATACAAAGGAAGACAG 57.604 37.037 0.00 0.00 0.00 3.51
3666 4185 9.128404 AGATATACGTACATACAAAGGAAGACA 57.872 33.333 0.00 0.00 0.00 3.41
3667 4186 9.962783 AAGATATACGTACATACAAAGGAAGAC 57.037 33.333 0.00 0.00 0.00 3.01
3683 4202 8.719648 CGGTATCTTGTCTCTTAAGATATACGT 58.280 37.037 5.44 0.00 44.44 3.57
3684 4203 8.176365 CCGGTATCTTGTCTCTTAAGATATACG 58.824 40.741 5.44 17.78 44.44 3.06
3685 4204 9.012161 ACCGGTATCTTGTCTCTTAAGATATAC 57.988 37.037 4.49 5.81 44.44 1.47
3686 4205 9.228949 GACCGGTATCTTGTCTCTTAAGATATA 57.771 37.037 7.34 0.00 44.44 0.86
3687 4206 7.094720 CGACCGGTATCTTGTCTCTTAAGATAT 60.095 40.741 7.34 0.00 44.44 1.63
3688 4207 6.204301 CGACCGGTATCTTGTCTCTTAAGATA 59.796 42.308 7.34 0.00 41.69 1.98
3689 4208 5.008811 CGACCGGTATCTTGTCTCTTAAGAT 59.991 44.000 7.34 0.00 44.61 2.40
3690 4209 4.334759 CGACCGGTATCTTGTCTCTTAAGA 59.665 45.833 7.34 4.81 38.42 2.10
3691 4210 4.599047 CGACCGGTATCTTGTCTCTTAAG 58.401 47.826 7.34 0.00 0.00 1.85
3692 4211 3.181493 GCGACCGGTATCTTGTCTCTTAA 60.181 47.826 7.34 0.00 0.00 1.85
3693 4212 2.357009 GCGACCGGTATCTTGTCTCTTA 59.643 50.000 7.34 0.00 0.00 2.10
3694 4213 1.134560 GCGACCGGTATCTTGTCTCTT 59.865 52.381 7.34 0.00 0.00 2.85
3695 4214 0.739561 GCGACCGGTATCTTGTCTCT 59.260 55.000 7.34 0.00 0.00 3.10
3696 4215 0.454600 TGCGACCGGTATCTTGTCTC 59.545 55.000 7.34 0.00 0.00 3.36
3697 4216 0.172803 GTGCGACCGGTATCTTGTCT 59.827 55.000 7.34 0.00 0.00 3.41
3698 4217 0.804933 GGTGCGACCGGTATCTTGTC 60.805 60.000 7.34 0.00 0.00 3.18
3699 4218 1.217244 GGTGCGACCGGTATCTTGT 59.783 57.895 7.34 0.00 0.00 3.16
3700 4219 1.520787 GGGTGCGACCGGTATCTTG 60.521 63.158 7.34 0.00 39.83 3.02
3701 4220 2.728435 GGGGTGCGACCGGTATCTT 61.728 63.158 7.34 0.00 39.83 2.40
3702 4221 3.152400 GGGGTGCGACCGGTATCT 61.152 66.667 7.34 0.00 39.83 1.98
3703 4222 2.728435 AAGGGGTGCGACCGGTATC 61.728 63.158 7.34 2.15 39.83 2.24
3704 4223 2.686106 AAGGGGTGCGACCGGTAT 60.686 61.111 7.34 0.00 39.83 2.73
3705 4224 3.697747 CAAGGGGTGCGACCGGTA 61.698 66.667 7.34 0.00 39.83 4.02
3707 4226 3.697747 TACAAGGGGTGCGACCGG 61.698 66.667 0.00 0.00 39.83 5.28
3708 4227 2.433664 GTACAAGGGGTGCGACCG 60.434 66.667 0.00 0.00 39.83 4.79
3709 4228 1.259840 TAGGTACAAGGGGTGCGACC 61.260 60.000 0.00 0.00 36.98 4.79
3710 4229 0.828677 ATAGGTACAAGGGGTGCGAC 59.171 55.000 0.00 0.00 32.16 5.19
3711 4230 2.457813 TATAGGTACAAGGGGTGCGA 57.542 50.000 0.00 0.00 32.16 5.10
3712 4231 6.097839 ACATATATATAGGTACAAGGGGTGCG 59.902 42.308 8.25 0.00 32.16 5.34
3713 4232 7.093024 ACACATATATATAGGTACAAGGGGTGC 60.093 40.741 9.58 0.00 0.00 5.01
3714 4233 8.375493 ACACATATATATAGGTACAAGGGGTG 57.625 38.462 9.58 0.00 0.00 4.61
3715 4234 8.407438 AGACACATATATATAGGTACAAGGGGT 58.593 37.037 9.58 2.55 0.00 4.95
3716 4235 8.840200 AGACACATATATATAGGTACAAGGGG 57.160 38.462 9.58 0.00 0.00 4.79
3721 4240 9.969001 TGCACTAGACACATATATATAGGTACA 57.031 33.333 9.58 0.00 0.00 2.90
3723 4242 9.106070 CGTGCACTAGACACATATATATAGGTA 57.894 37.037 16.19 0.00 37.93 3.08
3724 4243 7.827729 TCGTGCACTAGACACATATATATAGGT 59.172 37.037 16.19 4.22 37.93 3.08
3725 4244 8.209917 TCGTGCACTAGACACATATATATAGG 57.790 38.462 16.19 2.88 37.93 2.57
3726 4245 9.871299 GATCGTGCACTAGACACATATATATAG 57.129 37.037 16.19 0.00 37.93 1.31
3727 4246 9.391006 TGATCGTGCACTAGACACATATATATA 57.609 33.333 16.19 0.00 37.93 0.86
3728 4247 8.281212 TGATCGTGCACTAGACACATATATAT 57.719 34.615 16.19 0.00 37.93 0.86
3729 4248 7.681939 TGATCGTGCACTAGACACATATATA 57.318 36.000 16.19 0.00 37.93 0.86
3730 4249 6.575162 TGATCGTGCACTAGACACATATAT 57.425 37.500 16.19 7.52 37.93 0.86
3731 4250 6.385649 TTGATCGTGCACTAGACACATATA 57.614 37.500 16.19 4.09 37.93 0.86
3732 4251 4.918810 TGATCGTGCACTAGACACATAT 57.081 40.909 16.19 11.13 37.93 1.78
3733 4252 4.712122 TTGATCGTGCACTAGACACATA 57.288 40.909 16.19 7.81 37.93 2.29
3734 4253 3.592898 TTGATCGTGCACTAGACACAT 57.407 42.857 16.19 11.01 37.93 3.21
3735 4254 3.056891 TCATTGATCGTGCACTAGACACA 60.057 43.478 16.19 7.22 37.93 3.72
3736 4255 3.511699 TCATTGATCGTGCACTAGACAC 58.488 45.455 16.19 3.56 34.62 3.67
3737 4256 3.866883 TCATTGATCGTGCACTAGACA 57.133 42.857 16.19 6.14 0.00 3.41
3738 4257 4.805719 TGATTCATTGATCGTGCACTAGAC 59.194 41.667 16.19 3.48 0.00 2.59
3739 4258 5.009854 TGATTCATTGATCGTGCACTAGA 57.990 39.130 16.19 6.05 0.00 2.43
3740 4259 5.695363 AGATGATTCATTGATCGTGCACTAG 59.305 40.000 16.19 0.00 0.00 2.57
3741 4260 5.604565 AGATGATTCATTGATCGTGCACTA 58.395 37.500 16.19 3.92 0.00 2.74
3742 4261 4.449131 AGATGATTCATTGATCGTGCACT 58.551 39.130 16.19 0.00 0.00 4.40
3743 4262 4.808077 AGATGATTCATTGATCGTGCAC 57.192 40.909 6.82 6.82 0.00 4.57
3744 4263 5.993441 ACATAGATGATTCATTGATCGTGCA 59.007 36.000 0.00 0.00 0.00 4.57
3745 4264 6.477669 ACATAGATGATTCATTGATCGTGC 57.522 37.500 0.00 0.00 0.00 5.34
3746 4265 8.754230 AGTACATAGATGATTCATTGATCGTG 57.246 34.615 0.00 0.00 0.00 4.35
3760 4279 9.987272 TGTGGAGAATGATTTAGTACATAGATG 57.013 33.333 0.00 0.00 0.00 2.90
3762 4281 9.987272 CATGTGGAGAATGATTTAGTACATAGA 57.013 33.333 0.00 0.00 0.00 1.98
3763 4282 9.212641 CCATGTGGAGAATGATTTAGTACATAG 57.787 37.037 0.00 0.00 37.39 2.23
3764 4283 8.713971 ACCATGTGGAGAATGATTTAGTACATA 58.286 33.333 5.96 0.00 38.94 2.29
3765 4284 7.577303 ACCATGTGGAGAATGATTTAGTACAT 58.423 34.615 5.96 0.00 38.94 2.29
3766 4285 6.957631 ACCATGTGGAGAATGATTTAGTACA 58.042 36.000 5.96 0.00 38.94 2.90
3767 4286 9.209175 GATACCATGTGGAGAATGATTTAGTAC 57.791 37.037 5.96 0.00 38.94 2.73
3768 4287 8.933653 TGATACCATGTGGAGAATGATTTAGTA 58.066 33.333 5.96 0.00 38.94 1.82
3769 4288 7.805163 TGATACCATGTGGAGAATGATTTAGT 58.195 34.615 5.96 0.00 38.94 2.24
3770 4289 7.935755 ACTGATACCATGTGGAGAATGATTTAG 59.064 37.037 5.96 0.00 38.94 1.85
3771 4290 7.805163 ACTGATACCATGTGGAGAATGATTTA 58.195 34.615 5.96 0.00 38.94 1.40
3772 4291 6.666678 ACTGATACCATGTGGAGAATGATTT 58.333 36.000 5.96 0.00 38.94 2.17
3773 4292 6.257994 ACTGATACCATGTGGAGAATGATT 57.742 37.500 5.96 0.00 38.94 2.57
3774 4293 5.901413 ACTGATACCATGTGGAGAATGAT 57.099 39.130 5.96 0.00 38.94 2.45
3775 4294 5.698741 AACTGATACCATGTGGAGAATGA 57.301 39.130 5.96 0.00 38.94 2.57
3776 4295 6.764308 AAAACTGATACCATGTGGAGAATG 57.236 37.500 5.96 0.00 38.94 2.67
3797 4316 5.277634 CGGAAGCGAGAGGAAAACTTAAAAA 60.278 40.000 0.00 0.00 0.00 1.94
3798 4317 4.212636 CGGAAGCGAGAGGAAAACTTAAAA 59.787 41.667 0.00 0.00 0.00 1.52
3799 4318 3.744426 CGGAAGCGAGAGGAAAACTTAAA 59.256 43.478 0.00 0.00 0.00 1.52
3800 4319 3.323243 CGGAAGCGAGAGGAAAACTTAA 58.677 45.455 0.00 0.00 0.00 1.85
3801 4320 2.955614 CGGAAGCGAGAGGAAAACTTA 58.044 47.619 0.00 0.00 0.00 2.24
3802 4321 1.797025 CGGAAGCGAGAGGAAAACTT 58.203 50.000 0.00 0.00 0.00 2.66
3803 4322 3.516578 CGGAAGCGAGAGGAAAACT 57.483 52.632 0.00 0.00 0.00 2.66
3824 4343 4.664677 AGGTGCACAGACGACGGC 62.665 66.667 20.43 0.00 0.00 5.68
3825 4344 2.430921 GAGGTGCACAGACGACGG 60.431 66.667 20.43 0.00 0.00 4.79
3826 4345 1.442857 GAGAGGTGCACAGACGACG 60.443 63.158 20.43 0.00 0.00 5.12
3827 4346 1.442857 CGAGAGGTGCACAGACGAC 60.443 63.158 20.43 0.00 0.00 4.34
3828 4347 2.954611 CGAGAGGTGCACAGACGA 59.045 61.111 20.43 0.00 0.00 4.20
3829 4348 2.807045 GCGAGAGGTGCACAGACG 60.807 66.667 20.43 17.90 0.00 4.18
3830 4349 2.807045 CGCGAGAGGTGCACAGAC 60.807 66.667 20.43 9.03 0.00 3.51
3831 4350 3.268965 GACGCGAGAGGTGCACAGA 62.269 63.158 20.43 0.00 0.00 3.41
3832 4351 2.807045 GACGCGAGAGGTGCACAG 60.807 66.667 20.43 5.21 0.00 3.66
3833 4352 4.700365 CGACGCGAGAGGTGCACA 62.700 66.667 20.43 0.00 0.00 4.57
3853 4372 3.873026 GATGGGATCAGGAGCGGCG 62.873 68.421 0.51 0.51 0.00 6.46
3854 4373 2.031768 GATGGGATCAGGAGCGGC 59.968 66.667 0.00 0.00 0.00 6.53
3855 4374 2.746359 GGATGGGATCAGGAGCGG 59.254 66.667 0.00 0.00 0.00 5.52
3856 4375 2.746359 GGGATGGGATCAGGAGCG 59.254 66.667 0.00 0.00 0.00 5.03
3857 4376 1.700042 AACGGGATGGGATCAGGAGC 61.700 60.000 0.00 0.00 0.00 4.70
3858 4377 0.394565 GAACGGGATGGGATCAGGAG 59.605 60.000 0.00 0.00 0.00 3.69
3859 4378 1.054406 GGAACGGGATGGGATCAGGA 61.054 60.000 0.00 0.00 0.00 3.86
3860 4379 1.451936 GGAACGGGATGGGATCAGG 59.548 63.158 0.00 0.00 0.00 3.86
3861 4380 1.451936 GGGAACGGGATGGGATCAG 59.548 63.158 0.00 0.00 0.00 2.90
3862 4381 3.655358 GGGAACGGGATGGGATCA 58.345 61.111 0.00 0.00 0.00 2.92
3903 4422 4.057428 GATCGGGATCGGGAGCGG 62.057 72.222 0.00 0.00 36.95 5.52
3904 4423 4.057428 GGATCGGGATCGGGAGCG 62.057 72.222 2.80 0.00 38.69 5.03
3905 4424 2.507854 TTGGATCGGGATCGGGAGC 61.508 63.158 2.80 0.00 38.69 4.70
3906 4425 1.367840 GTTGGATCGGGATCGGGAG 59.632 63.158 2.80 0.00 38.69 4.30
3907 4426 1.382009 TGTTGGATCGGGATCGGGA 60.382 57.895 2.80 0.00 38.69 5.14
3908 4427 1.227556 GTGTTGGATCGGGATCGGG 60.228 63.158 2.80 0.00 38.69 5.14
3909 4428 1.227556 GGTGTTGGATCGGGATCGG 60.228 63.158 2.80 0.00 38.69 4.18
3910 4429 0.530650 CAGGTGTTGGATCGGGATCG 60.531 60.000 2.80 0.00 38.69 3.69
3911 4430 0.815615 GCAGGTGTTGGATCGGGATC 60.816 60.000 0.00 0.00 37.11 3.36
3912 4431 1.224592 GCAGGTGTTGGATCGGGAT 59.775 57.895 0.00 0.00 0.00 3.85
3913 4432 2.668632 GCAGGTGTTGGATCGGGA 59.331 61.111 0.00 0.00 0.00 5.14
3914 4433 2.438434 GGCAGGTGTTGGATCGGG 60.438 66.667 0.00 0.00 0.00 5.14
3915 4434 1.450312 GAGGCAGGTGTTGGATCGG 60.450 63.158 0.00 0.00 0.00 4.18
3916 4435 1.811266 CGAGGCAGGTGTTGGATCG 60.811 63.158 0.00 0.00 0.00 3.69
3917 4436 0.179000 ATCGAGGCAGGTGTTGGATC 59.821 55.000 0.00 0.00 0.00 3.36
3918 4437 0.179000 GATCGAGGCAGGTGTTGGAT 59.821 55.000 0.00 0.00 0.00 3.41
3919 4438 1.596934 GATCGAGGCAGGTGTTGGA 59.403 57.895 0.00 0.00 0.00 3.53
3920 4439 1.811266 CGATCGAGGCAGGTGTTGG 60.811 63.158 10.26 0.00 0.00 3.77
3921 4440 2.456119 GCGATCGAGGCAGGTGTTG 61.456 63.158 21.57 0.00 0.00 3.33
3922 4441 2.125512 GCGATCGAGGCAGGTGTT 60.126 61.111 21.57 0.00 0.00 3.32
3923 4442 4.148825 GGCGATCGAGGCAGGTGT 62.149 66.667 21.57 0.00 36.61 4.16
3924 4443 4.899239 GGGCGATCGAGGCAGGTG 62.899 72.222 21.57 0.00 38.57 4.00
3926 4445 3.873026 GATGGGCGATCGAGGCAGG 62.873 68.421 21.57 0.00 38.57 4.85
3927 4446 2.356793 GATGGGCGATCGAGGCAG 60.357 66.667 21.57 0.00 38.57 4.85
3928 4447 3.153781 TGATGGGCGATCGAGGCA 61.154 61.111 21.57 5.90 38.57 4.75
3929 4448 2.663188 GTGATGGGCGATCGAGGC 60.663 66.667 21.57 1.89 33.17 4.70
3930 4449 2.355126 CGTGATGGGCGATCGAGG 60.355 66.667 21.57 0.00 33.17 4.63
3931 4450 3.032609 GCGTGATGGGCGATCGAG 61.033 66.667 21.57 2.75 33.17 4.04
3932 4451 3.832492 TGCGTGATGGGCGATCGA 61.832 61.111 21.57 0.00 33.17 3.59
3933 4452 3.630148 GTGCGTGATGGGCGATCG 61.630 66.667 11.69 11.69 33.17 3.69
3934 4453 3.272334 GGTGCGTGATGGGCGATC 61.272 66.667 2.14 2.14 0.00 3.69
3935 4454 4.856801 GGGTGCGTGATGGGCGAT 62.857 66.667 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.