Multiple sequence alignment - TraesCS4D01G285400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G285400 chr4D 100.000 6961 0 0 1 6961 456055895 456048935 0.000000e+00 12855.0
1 TraesCS4D01G285400 chr4D 86.534 958 100 14 19 962 456252701 456253643 0.000000e+00 1027.0
2 TraesCS4D01G285400 chr4D 89.831 59 4 2 2819 2876 456051933 456051876 2.690000e-09 75.0
3 TraesCS4D01G285400 chr4D 89.831 59 4 2 3963 4020 456053077 456053020 2.690000e-09 75.0
4 TraesCS4D01G285400 chr4B 90.710 5070 304 83 1743 6717 570145857 570140860 0.000000e+00 6599.0
5 TraesCS4D01G285400 chr4B 93.919 740 30 10 959 1688 570146586 570145852 0.000000e+00 1103.0
6 TraesCS4D01G285400 chr4B 79.227 207 12 13 6717 6893 570140493 570140288 1.590000e-21 115.0
7 TraesCS4D01G285400 chr4B 89.831 59 4 2 2819 2876 570143641 570143584 2.690000e-09 75.0
8 TraesCS4D01G285400 chr4A 93.601 2516 121 23 962 3458 11671170 11673664 0.000000e+00 3718.0
9 TraesCS4D01G285400 chr4A 96.665 2009 56 3 3972 5979 11673661 11675659 0.000000e+00 3328.0
10 TraesCS4D01G285400 chr4A 85.521 518 23 13 5972 6465 11675769 11676258 1.740000e-135 494.0
11 TraesCS4D01G285400 chr4A 77.239 268 28 16 6655 6889 11676324 11676591 7.330000e-25 126.0
12 TraesCS4D01G285400 chr4A 98.571 70 1 0 6892 6961 92741136 92741067 2.640000e-24 124.0
13 TraesCS4D01G285400 chr4A 89.831 59 4 2 3963 4020 11673024 11673081 2.690000e-09 75.0
14 TraesCS4D01G285400 chr6D 85.333 150 16 5 4036 4185 174625246 174625389 4.350000e-32 150.0
15 TraesCS4D01G285400 chr6D 91.954 87 5 2 6877 6961 243033071 243032985 3.410000e-23 121.0
16 TraesCS4D01G285400 chr6D 94.872 78 3 1 6884 6961 472736966 472736890 3.410000e-23 121.0
17 TraesCS4D01G285400 chr7D 98.592 71 1 0 6891 6961 86087587 86087517 7.330000e-25 126.0
18 TraesCS4D01G285400 chr7D 97.297 74 2 0 6888 6961 507853592 507853665 7.330000e-25 126.0
19 TraesCS4D01G285400 chr2B 98.592 71 1 0 6891 6961 560444274 560444344 7.330000e-25 126.0
20 TraesCS4D01G285400 chr2B 80.870 115 22 0 3215 3329 93803446 93803332 2.670000e-14 91.6
21 TraesCS4D01G285400 chr2B 86.486 74 10 0 4105 4178 398704598 398704671 1.610000e-11 82.4
22 TraesCS4D01G285400 chr7B 92.771 83 4 2 6879 6961 588861671 588861751 1.230000e-22 119.0
23 TraesCS4D01G285400 chr7B 88.158 76 7 1 2872 2945 9682236 9682311 9.620000e-14 89.8
24 TraesCS4D01G285400 chr3D 93.671 79 4 1 6884 6961 385068120 385068042 4.410000e-22 117.0
25 TraesCS4D01G285400 chr2A 91.765 85 6 1 6878 6961 685975302 685975386 4.410000e-22 117.0
26 TraesCS4D01G285400 chr2A 87.671 73 7 2 2875 2945 619763996 619764068 4.470000e-12 84.2
27 TraesCS4D01G285400 chr1A 90.909 77 5 1 2871 2945 22295359 22295283 1.240000e-17 102.0
28 TraesCS4D01G285400 chr6A 77.640 161 31 5 3195 3353 229083931 229083774 7.430000e-15 93.5
29 TraesCS4D01G285400 chr3A 88.312 77 6 2 2871 2944 451672425 451672349 9.620000e-14 89.8
30 TraesCS4D01G285400 chr3A 91.489 47 4 0 2880 2926 634660449 634660403 1.620000e-06 65.8
31 TraesCS4D01G285400 chr2D 85.333 75 9 1 2873 2945 133044467 133044393 7.490000e-10 76.8
32 TraesCS4D01G285400 chr2D 85.135 74 11 0 4105 4178 330487269 330487342 7.490000e-10 76.8
33 TraesCS4D01G285400 chr6B 84.000 75 10 1 2873 2945 710266570 710266644 3.480000e-08 71.3
34 TraesCS4D01G285400 chr5D 87.719 57 7 0 2873 2929 114807164 114807108 4.510000e-07 67.6
35 TraesCS4D01G285400 chr5B 88.000 50 4 2 707 756 271108977 271108930 2.710000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G285400 chr4D 456048935 456055895 6960 True 12855.0 12855 100.00000 1 6961 1 chr4D.!!$R1 6960
1 TraesCS4D01G285400 chr4D 456252701 456253643 942 False 1027.0 1027 86.53400 19 962 1 chr4D.!!$F1 943
2 TraesCS4D01G285400 chr4B 570140288 570146586 6298 True 1973.0 6599 88.42175 959 6893 4 chr4B.!!$R1 5934
3 TraesCS4D01G285400 chr4A 11671170 11676591 5421 False 1548.2 3718 88.57140 962 6889 5 chr4A.!!$F1 5927

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.108615 CTGCTACGTCACCTCCTTGG 60.109 60.000 0.0 0.0 42.93 3.61 F
464 465 0.394625 GCTCCTGGTACTCCTCGTCT 60.395 60.000 0.0 0.0 34.23 4.18 F
669 676 0.749649 AGATGAGAGGATGTGCCGTC 59.250 55.000 0.0 0.0 43.43 4.79 F
802 814 1.066303 TGACAACCATTTTGCACGGAC 59.934 47.619 0.0 0.0 0.00 4.79 F
1236 1257 1.067060 CCAGATGCCGATACAGACGAA 59.933 52.381 0.0 0.0 0.00 3.85 F
3140 3178 0.343372 AGGTTCAGCCCCCTAGATGA 59.657 55.000 0.0 0.0 38.26 2.92 F
3717 3757 0.592637 CGCAGATTGTTGAAGTGGCA 59.407 50.000 0.0 0.0 0.00 4.92 F
4517 4585 0.253044 TTGGAGTGCCATGTAGCCTC 59.747 55.000 0.0 0.0 45.46 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2157 2181 0.670162 CAATAAATGGCTGGCGAGGG 59.330 55.000 0.00 0.00 0.00 4.30 R
2199 2223 4.262894 GGTAGTTTCTCCATCAGTTCCACA 60.263 45.833 0.00 0.00 0.00 4.17 R
2545 2579 2.359848 TGGCTATGACATGCATGCTTTC 59.640 45.455 26.53 16.69 37.87 2.62 R
2771 2805 3.719924 CTGCTAGCAGAATCCTTCTCTG 58.280 50.000 36.47 8.12 46.30 3.35 R
3153 3191 0.614979 GCCCAGGTCTAGACAGGACA 60.615 60.000 26.58 0.00 35.61 4.02 R
4517 4585 2.171003 GGGGTCCAGAAATCCAAAGTG 58.829 52.381 0.00 0.00 0.00 3.16 R
5225 5296 4.530553 ACCAACCATACAGGCGATATATCA 59.469 41.667 13.11 0.00 43.14 2.15 R
6476 6693 0.038159 AGGACAGACGAAGAAAGCCG 60.038 55.000 0.00 0.00 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 6.645790 ACAAATCCTATGATTTCCATCAGC 57.354 37.500 3.27 0.00 45.87 4.26
47 48 3.726557 TTTCCATCAGCAGAAGGTCAT 57.273 42.857 0.00 0.00 34.28 3.06
49 50 1.487976 TCCATCAGCAGAAGGTCATCC 59.512 52.381 0.00 0.00 34.28 3.51
55 56 2.093075 CAGCAGAAGGTCATCCTCATGT 60.093 50.000 0.00 0.00 44.35 3.21
94 95 4.452733 CTCGAGGTTGGGGTCCGC 62.453 72.222 3.91 0.00 0.00 5.54
115 116 2.125106 GACCCATGCCGACACCTC 60.125 66.667 0.00 0.00 0.00 3.85
132 133 1.058590 CTCGTCGGACTTCACGAACG 61.059 60.000 6.57 0.00 44.08 3.95
165 166 2.629656 GCATTGCACCGTTCCTGCT 61.630 57.895 3.15 0.00 35.53 4.24
166 167 1.305219 GCATTGCACCGTTCCTGCTA 61.305 55.000 3.15 0.00 35.53 3.49
180 181 0.108615 CTGCTACGTCACCTCCTTGG 60.109 60.000 0.00 0.00 42.93 3.61
188 189 1.194781 TCACCTCCTTGGCTGACCTC 61.195 60.000 0.00 0.00 40.22 3.85
197 198 1.985116 GGCTGACCTCTCCTCGGTT 60.985 63.158 0.00 0.00 34.19 4.44
198 199 0.683504 GGCTGACCTCTCCTCGGTTA 60.684 60.000 0.00 0.00 34.19 2.85
202 203 0.456628 GACCTCTCCTCGGTTAGCAC 59.543 60.000 0.00 0.00 34.19 4.40
218 219 2.202492 ACGATGCTCTGCGACGAC 60.202 61.111 0.00 0.00 34.95 4.34
227 228 2.435410 TGCGACGACGAGGAGCTA 60.435 61.111 12.29 0.00 42.66 3.32
232 233 1.002379 ACGACGAGGAGCTACCACT 60.002 57.895 0.00 0.00 42.04 4.00
243 244 2.760799 TACCACTACCGCGGCCAT 60.761 61.111 28.58 8.89 0.00 4.40
259 260 2.243810 GCCATCTAGGTAGTGGAGGAG 58.756 57.143 8.08 0.00 40.61 3.69
287 288 4.110493 GCCTTCGCGATTGCTAGT 57.890 55.556 10.88 0.00 39.65 2.57
288 289 1.638467 GCCTTCGCGATTGCTAGTG 59.362 57.895 10.88 0.00 39.65 2.74
290 291 1.638467 CTTCGCGATTGCTAGTGGC 59.362 57.895 10.88 0.00 39.65 5.01
301 302 1.681486 GCTAGTGGCACCTCCTCCTC 61.681 65.000 15.27 0.00 41.35 3.71
302 303 1.001760 TAGTGGCACCTCCTCCTCC 59.998 63.158 15.27 0.00 35.26 4.30
315 316 1.461268 TCCTCCAGGACCTTGCACA 60.461 57.895 0.00 0.00 39.78 4.57
319 320 1.152984 CCAGGACCTTGCACACACA 60.153 57.895 0.00 0.00 0.00 3.72
341 342 1.410737 GCGTTAGCTCGTCGATGCAA 61.411 55.000 15.71 7.82 41.01 4.08
343 344 0.645868 GTTAGCTCGTCGATGCAACC 59.354 55.000 15.71 0.00 0.00 3.77
345 346 4.210304 GCTCGTCGATGCAACCGC 62.210 66.667 0.00 0.00 39.24 5.68
352 353 2.237066 CGATGCAACCGCGATGCTA 61.237 57.895 28.41 18.88 44.14 3.49
359 360 1.961180 AACCGCGATGCTAGCTCCTT 61.961 55.000 17.23 0.00 0.00 3.36
360 361 1.953138 CCGCGATGCTAGCTCCTTG 60.953 63.158 17.23 5.89 0.00 3.61
444 445 2.953284 CTCAATCATGGGCTCCATCT 57.047 50.000 3.93 0.00 43.15 2.90
452 453 2.509916 GGCTCCATCTGCTCCTGG 59.490 66.667 0.00 0.00 0.00 4.45
464 465 0.394625 GCTCCTGGTACTCCTCGTCT 60.395 60.000 0.00 0.00 34.23 4.18
507 514 2.650116 GGCCTCCTCTTGCTCGTCA 61.650 63.158 0.00 0.00 0.00 4.35
511 518 1.649664 CTCCTCTTGCTCGTCATTGG 58.350 55.000 0.00 0.00 0.00 3.16
512 519 1.205655 CTCCTCTTGCTCGTCATTGGA 59.794 52.381 0.00 0.00 0.00 3.53
513 520 1.623311 TCCTCTTGCTCGTCATTGGAA 59.377 47.619 0.00 0.00 0.00 3.53
548 555 1.219393 CCTTCTTGGAGGAGCCGAC 59.781 63.158 0.00 0.00 39.25 4.79
577 584 3.157252 TCGATGGCCCTGGAGAGC 61.157 66.667 0.00 0.00 0.00 4.09
606 613 1.767088 CTGCTCCAAGATCCAGATCCA 59.233 52.381 4.01 0.00 38.58 3.41
611 618 2.909006 TCCAAGATCCAGATCCATAGCC 59.091 50.000 4.01 0.00 38.58 3.93
622 629 4.529219 CATAGCCGCGGCCTGTGA 62.529 66.667 44.47 25.58 43.17 3.58
665 672 2.593346 ACGAAGATGAGAGGATGTGC 57.407 50.000 0.00 0.00 0.00 4.57
666 673 1.137872 ACGAAGATGAGAGGATGTGCC 59.862 52.381 0.00 0.00 0.00 5.01
669 676 0.749649 AGATGAGAGGATGTGCCGTC 59.250 55.000 0.00 0.00 43.43 4.79
721 733 4.440987 TCGTCGCGTCGCTCTGAC 62.441 66.667 20.62 13.90 44.53 3.51
797 809 2.904697 TGCATGACAACCATTTTGCA 57.095 40.000 0.00 0.00 36.33 4.08
802 814 1.066303 TGACAACCATTTTGCACGGAC 59.934 47.619 0.00 0.00 0.00 4.79
804 816 1.478510 ACAACCATTTTGCACGGACAA 59.521 42.857 0.00 0.00 0.00 3.18
828 841 9.689976 CAAAAGTTTTTGGATGAAAAGGTTTTT 57.310 25.926 9.01 0.00 42.81 1.94
831 844 7.171653 AGTTTTTGGATGAAAAGGTTTTTGGA 58.828 30.769 0.00 0.00 34.96 3.53
842 855 2.308866 AGGTTTTTGGATGAGATCGGGT 59.691 45.455 0.00 0.00 0.00 5.28
843 856 2.423538 GGTTTTTGGATGAGATCGGGTG 59.576 50.000 0.00 0.00 0.00 4.61
844 857 3.081804 GTTTTTGGATGAGATCGGGTGT 58.918 45.455 0.00 0.00 0.00 4.16
845 858 2.401583 TTTGGATGAGATCGGGTGTG 57.598 50.000 0.00 0.00 0.00 3.82
846 859 1.275666 TTGGATGAGATCGGGTGTGT 58.724 50.000 0.00 0.00 0.00 3.72
871 884 2.203466 TACGTGGTGGTGGTCCGA 60.203 61.111 0.00 0.00 36.30 4.55
888 901 4.096833 GGTCCGAACACCTACAAAGTTTTT 59.903 41.667 0.00 0.00 33.08 1.94
899 912 6.664384 ACCTACAAAGTTTTTCCTGGTTTACA 59.336 34.615 0.00 0.00 0.00 2.41
901 914 6.599356 ACAAAGTTTTTCCTGGTTTACAGT 57.401 33.333 0.00 0.00 46.06 3.55
902 915 7.706100 ACAAAGTTTTTCCTGGTTTACAGTA 57.294 32.000 0.00 0.00 46.06 2.74
903 916 7.541162 ACAAAGTTTTTCCTGGTTTACAGTAC 58.459 34.615 0.00 0.00 46.06 2.73
904 917 7.177041 ACAAAGTTTTTCCTGGTTTACAGTACA 59.823 33.333 0.00 0.00 46.06 2.90
914 927 4.023878 TGGTTTACAGTACATTCCGTTTGC 60.024 41.667 0.00 0.00 0.00 3.68
915 928 4.145997 GTTTACAGTACATTCCGTTTGCG 58.854 43.478 0.00 0.00 37.95 4.85
933 946 5.560966 TTGCGGGATTTTAGACAAGAATC 57.439 39.130 0.00 0.00 0.00 2.52
940 953 7.652105 CGGGATTTTAGACAAGAATCGATAAGA 59.348 37.037 0.00 0.00 32.03 2.10
946 959 5.157781 AGACAAGAATCGATAAGATAGCGC 58.842 41.667 0.00 0.00 38.98 5.92
955 968 3.786576 CGATAAGATAGCGCGTTGGATAG 59.213 47.826 8.43 0.00 0.00 2.08
1083 1101 3.852578 ACTGTACCTCCCATTCTTCCATT 59.147 43.478 0.00 0.00 0.00 3.16
1157 1178 3.077556 AGTCCTTCGCCCTCGCAT 61.078 61.111 0.00 0.00 35.26 4.73
1230 1251 2.421314 CCGCCAGATGCCGATACA 59.579 61.111 0.00 0.00 36.24 2.29
1236 1257 1.067060 CCAGATGCCGATACAGACGAA 59.933 52.381 0.00 0.00 0.00 3.85
1251 1272 2.683933 GAAGGAGAGGCCCCACGA 60.684 66.667 0.00 0.00 37.37 4.35
1377 1398 2.966309 GCGCAAGGTGACGGAAAGG 61.966 63.158 0.30 0.00 38.28 3.11
1380 1401 1.172812 GCAAGGTGACGGAAAGGCTT 61.173 55.000 0.00 0.00 0.00 4.35
1388 1409 1.266989 GACGGAAAGGCTTTTGTCTGG 59.733 52.381 26.13 12.28 32.83 3.86
1408 1429 3.136123 CAACCCATGGAGCCGCAG 61.136 66.667 15.22 0.00 0.00 5.18
1467 1488 4.394712 CAGGTGGTGGTCCTCGGC 62.395 72.222 0.00 0.00 32.37 5.54
1684 1708 5.644644 TCGTCGATGATTGATATGATGAGG 58.355 41.667 2.39 0.00 0.00 3.86
1685 1709 5.183904 TCGTCGATGATTGATATGATGAGGT 59.816 40.000 2.39 0.00 0.00 3.85
1686 1710 6.374333 TCGTCGATGATTGATATGATGAGGTA 59.626 38.462 2.39 0.00 0.00 3.08
1687 1711 6.690528 CGTCGATGATTGATATGATGAGGTAG 59.309 42.308 0.00 0.00 0.00 3.18
1688 1712 7.414540 CGTCGATGATTGATATGATGAGGTAGA 60.415 40.741 0.00 0.00 0.00 2.59
1718 1742 3.687572 ATTTCATGCGAGCATTCAGAC 57.312 42.857 7.97 0.00 33.90 3.51
1719 1743 2.097680 TTCATGCGAGCATTCAGACA 57.902 45.000 7.97 0.00 33.90 3.41
1736 1760 5.545588 TCAGACACTTCTCCATGAAAAGAG 58.454 41.667 0.00 0.00 33.79 2.85
1737 1761 5.070981 TCAGACACTTCTCCATGAAAAGAGT 59.929 40.000 0.00 0.00 33.79 3.24
1739 1763 6.367422 CAGACACTTCTCCATGAAAAGAGTAC 59.633 42.308 0.00 0.00 33.79 2.73
1740 1764 6.042093 AGACACTTCTCCATGAAAAGAGTACA 59.958 38.462 0.00 0.00 33.79 2.90
1753 1777 3.166489 AGAGTACATGGCTAGTTTCGC 57.834 47.619 0.00 0.00 0.00 4.70
1790 1814 5.345702 CAAACCATTCGATTGATTGATGCT 58.654 37.500 8.84 0.00 0.00 3.79
1820 1844 7.613801 AGCCATCCAAACTTTGTATGTAACATA 59.386 33.333 6.39 0.00 38.10 2.29
1834 1858 4.242475 TGTAACATACTGCTTTCACTCCG 58.758 43.478 0.00 0.00 0.00 4.63
1993 2017 1.133606 GTGGTTTCCAGGAGGGTTTCA 60.134 52.381 0.00 0.00 38.11 2.69
2056 2080 6.973642 TCATCCTTTCTTGGGAGTATTTCAT 58.026 36.000 0.00 0.00 36.21 2.57
2157 2181 3.511146 TCATTCCTCTTGCATTGGGAAAC 59.489 43.478 15.38 0.00 40.57 2.78
2199 2223 2.439507 TCTGTCAGGACCTTCTTTTGCT 59.560 45.455 0.00 0.00 0.00 3.91
2341 2367 4.808364 TGTTGAAGAATTTTTGGCTTTCCG 59.192 37.500 0.00 0.00 34.14 4.30
2520 2554 4.745649 ACTTCACCTTTAGACGCTATGAC 58.254 43.478 0.00 0.00 0.00 3.06
2538 2572 4.998671 TGACAATCTTCAGCCACAAAAA 57.001 36.364 0.00 0.00 0.00 1.94
2563 2597 3.957671 ACGAAAGCATGCATGTCATAG 57.042 42.857 26.79 17.58 33.19 2.23
2567 2601 1.605753 AGCATGCATGTCATAGCCAG 58.394 50.000 26.79 0.00 33.19 4.85
2589 2623 5.757320 CAGGATTATTGTTTGTTTGGTTGCA 59.243 36.000 0.00 0.00 0.00 4.08
2592 2626 6.037610 GGATTATTGTTTGTTTGGTTGCACAA 59.962 34.615 0.00 0.00 0.00 3.33
2691 2725 9.685276 TTGAGATTTCTTTTGCATAAGAGGATA 57.315 29.630 17.35 2.87 35.69 2.59
2704 2738 7.092489 TGCATAAGAGGATATATATTGCCCACA 60.092 37.037 9.65 0.00 0.00 4.17
2903 2938 5.474189 CCTCCGTCCCAAATTAGTTGTTTTA 59.526 40.000 0.00 0.00 35.23 1.52
2909 2944 9.471084 CGTCCCAAATTAGTTGTTTTAGATTTT 57.529 29.630 0.00 0.00 35.23 1.82
2951 2988 8.146412 ACCTAAGTAAAACGTGTCTAAGACAAT 58.854 33.333 0.00 0.00 44.49 2.71
3024 3061 5.242434 TGTGTTGGCGAATAATAGTCTGTT 58.758 37.500 0.00 0.00 0.00 3.16
3044 3081 3.616956 TGATCTTGCGATCTGAAGGTT 57.383 42.857 0.00 0.00 45.10 3.50
3048 3085 2.037121 TCTTGCGATCTGAAGGTTGTCA 59.963 45.455 0.00 0.00 0.00 3.58
3051 3088 2.028203 TGCGATCTGAAGGTTGTCATGA 60.028 45.455 0.00 0.00 0.00 3.07
3140 3178 0.343372 AGGTTCAGCCCCCTAGATGA 59.657 55.000 0.00 0.00 38.26 2.92
3153 3191 6.678547 CCCCCTAGATGAGTAATAGCTCTAT 58.321 44.000 0.00 0.00 36.51 1.98
3239 3277 1.304381 GGGTCAGGCTTGGCATTCA 60.304 57.895 1.81 0.00 0.00 2.57
3249 3288 2.439156 GGCATTCAGGCCGAGCTT 60.439 61.111 0.00 0.00 45.40 3.74
3292 3331 3.058160 CAGTTTGGGCTGGGCTCG 61.058 66.667 0.00 0.00 33.11 5.03
3379 3418 0.600255 CGAGAAGTGTCGTTTGGGCT 60.600 55.000 0.00 0.00 35.14 5.19
3469 3508 6.436027 TGATCAGATTTAGTCCTGACTACCT 58.564 40.000 6.52 2.74 43.02 3.08
3505 3544 9.330063 GATGAACACAACTGATTATAATGGAGA 57.670 33.333 1.78 0.00 0.00 3.71
3540 3579 2.486727 GGGCTAGGTTAAGGGTATGTGC 60.487 54.545 0.00 0.00 0.00 4.57
3542 3581 3.467803 GCTAGGTTAAGGGTATGTGCTG 58.532 50.000 0.00 0.00 0.00 4.41
3566 3605 0.694444 GTATCTCCCTCCCCTTGGCA 60.694 60.000 0.00 0.00 0.00 4.92
3589 3628 6.755018 GCAGGGGGTAGTACTTCCCTTATATA 60.755 46.154 30.27 0.00 46.95 0.86
3592 3631 5.660417 GGGGTAGTACTTCCCTTATATAGGC 59.340 48.000 30.27 11.88 43.27 3.93
3594 3633 6.154192 GGGTAGTACTTCCCTTATATAGGCAC 59.846 46.154 26.13 1.93 43.27 5.01
3600 3639 4.759793 TCCCTTATATAGGCACTCCTCA 57.240 45.455 0.00 0.00 43.06 3.86
3601 3640 5.291100 TCCCTTATATAGGCACTCCTCAT 57.709 43.478 0.00 0.00 43.06 2.90
3605 3644 1.257743 TATAGGCACTCCTCATCCGC 58.742 55.000 0.00 0.00 43.06 5.54
3613 3652 3.430374 GCACTCCTCATCCGCTTAGTTTA 60.430 47.826 0.00 0.00 0.00 2.01
3685 3724 1.410882 GTTAGGGCCTAGAGAGCACAG 59.589 57.143 13.99 0.00 35.54 3.66
3693 3732 1.879380 CTAGAGAGCACAGATCTCCCG 59.121 57.143 8.50 0.00 44.98 5.14
3694 3733 1.067250 GAGAGCACAGATCTCCCGC 59.933 63.158 1.01 0.00 38.92 6.13
3717 3757 0.592637 CGCAGATTGTTGAAGTGGCA 59.407 50.000 0.00 0.00 0.00 4.92
3740 3780 4.133078 CTCTTGATCCTTGTCCCTTATGC 58.867 47.826 0.00 0.00 0.00 3.14
3763 3824 2.889521 TATCGGCCTGCCTCCCTTCA 62.890 60.000 6.60 0.00 0.00 3.02
3774 3835 1.291877 CTCCCTTCAACGCCAAGACG 61.292 60.000 0.00 0.00 39.50 4.18
3816 3877 1.355720 CCCCAAGGACACCAGAAGATT 59.644 52.381 0.00 0.00 33.47 2.40
3817 3878 2.619074 CCCCAAGGACACCAGAAGATTC 60.619 54.545 0.00 0.00 33.47 2.52
3818 3879 2.040278 CCCAAGGACACCAGAAGATTCA 59.960 50.000 0.00 0.00 0.00 2.57
3836 3897 7.020827 AGATTCATTACCACCTCAAGAGAAA 57.979 36.000 0.00 0.00 0.00 2.52
3844 3905 3.326747 CACCTCAAGAGAAAGGTTACCG 58.673 50.000 0.00 0.00 43.45 4.02
3846 3907 2.028020 CCTCAAGAGAAAGGTTACCGCT 60.028 50.000 0.00 0.00 0.00 5.52
3903 3971 7.560262 ACAAATAAGGAAGAAAAGGCCCTATAC 59.440 37.037 0.00 0.00 0.00 1.47
3909 3977 2.835764 AGAAAAGGCCCTATACGTGTCA 59.164 45.455 0.00 0.00 0.00 3.58
3916 3984 2.739292 CCCTATACGTGTCATGAACCG 58.261 52.381 12.32 12.32 0.00 4.44
3920 3988 2.822418 TACGTGTCATGAACCGCCCG 62.822 60.000 13.48 0.54 0.00 6.13
3929 3997 4.265056 AACCGCCCGCAAAGGTCT 62.265 61.111 0.00 0.00 37.26 3.85
4094 4162 7.138054 TCTATTTCCCCAAGTTATTCTCTCC 57.862 40.000 0.00 0.00 0.00 3.71
4202 4270 4.019771 TCACAATAGACACCCACATTAGCA 60.020 41.667 0.00 0.00 0.00 3.49
4407 4475 4.760530 ATCTGCTATGTTTGTAGAGCCA 57.239 40.909 0.00 0.00 34.11 4.75
4517 4585 0.253044 TTGGAGTGCCATGTAGCCTC 59.747 55.000 0.00 0.00 45.46 4.70
4754 4825 1.613437 ACTGTTAGGGTTGTGCATTGC 59.387 47.619 0.46 0.46 0.00 3.56
4863 4934 3.492313 GGCACTTAAGAATGTTCTTGCG 58.508 45.455 16.20 10.05 46.34 4.85
4974 5045 0.512952 CGACAAAGGTGTGCAGTAGC 59.487 55.000 0.00 0.00 38.41 3.58
5173 5244 0.875059 GGTTCAGGCGAGAAACTTGG 59.125 55.000 3.92 0.00 32.49 3.61
5225 5296 8.914011 GTTTGTAATATTCCCCTCTATTGCTTT 58.086 33.333 0.00 0.00 0.00 3.51
5234 5305 6.878317 TCCCCTCTATTGCTTTGATATATCG 58.122 40.000 8.19 0.00 0.00 2.92
5254 5325 5.298989 TCGCCTGTATGGTTGGTAATTAT 57.701 39.130 0.00 0.00 38.35 1.28
5301 5372 0.255890 AAGGTGTGTCAACTGCTGGT 59.744 50.000 0.00 0.00 28.79 4.00
5487 5558 5.216566 TGAACTGTTTTCTCTCACAAACG 57.783 39.130 0.00 0.00 35.93 3.60
5577 5648 9.765795 CTCCTCTCTAAAAACAGACTCTAAAAA 57.234 33.333 0.00 0.00 0.00 1.94
5585 5656 7.755582 AAAACAGACTCTAAAAATTGCACAC 57.244 32.000 0.00 0.00 0.00 3.82
5612 5683 7.614192 AGTCTTTTATTTCGGAAATACATGGGT 59.386 33.333 19.87 7.02 33.32 4.51
5626 5697 1.916181 CATGGGTTACTTGAGGGACCT 59.084 52.381 0.00 0.00 32.73 3.85
5636 5707 7.935755 GGTTACTTGAGGGACCTAAAATATACC 59.064 40.741 0.00 0.00 0.00 2.73
5691 5762 7.094334 TGCTATGTATACTTTAGACCGATCCTG 60.094 40.741 14.10 0.00 0.00 3.86
5862 5934 6.948309 ACTTTTGCAACTATCCTACATTTCCT 59.052 34.615 0.00 0.00 0.00 3.36
5990 6183 1.923356 TCCAAAAGAATGGAGCCACC 58.077 50.000 0.00 0.00 44.52 4.61
6078 6271 9.098355 TCAACTATATTTTCTCTTGTCAATCCG 57.902 33.333 0.00 0.00 0.00 4.18
6113 6306 5.993055 TGATTGCTTTGAGAGATATCACCA 58.007 37.500 5.32 0.00 0.00 4.17
6115 6308 6.317140 TGATTGCTTTGAGAGATATCACCAAC 59.683 38.462 5.32 0.00 0.00 3.77
6156 6349 5.413499 AGTTTATGCTTTCATGCACATTCC 58.587 37.500 0.00 0.00 46.33 3.01
6196 6390 5.304614 CAGGATATACATTATAGGGACCCGG 59.695 48.000 4.40 0.00 0.00 5.73
6278 6472 8.787852 AGGTTTCATCACTTTTAGAATGAGTTC 58.212 33.333 0.00 0.00 34.46 3.01
6279 6473 8.023706 GGTTTCATCACTTTTAGAATGAGTTCC 58.976 37.037 0.00 0.00 34.81 3.62
6341 6557 9.950680 TCATGACAAGACTTGAGTTTATTTTTC 57.049 29.630 21.95 5.33 0.00 2.29
6463 6680 2.814336 GTCAATTTTCTTCCGCCTGTCT 59.186 45.455 0.00 0.00 0.00 3.41
6464 6681 3.074412 TCAATTTTCTTCCGCCTGTCTC 58.926 45.455 0.00 0.00 0.00 3.36
6465 6682 2.115343 ATTTTCTTCCGCCTGTCTCC 57.885 50.000 0.00 0.00 0.00 3.71
6466 6683 0.762418 TTTTCTTCCGCCTGTCTCCA 59.238 50.000 0.00 0.00 0.00 3.86
6467 6684 0.984230 TTTCTTCCGCCTGTCTCCAT 59.016 50.000 0.00 0.00 0.00 3.41
6468 6685 0.984230 TTCTTCCGCCTGTCTCCATT 59.016 50.000 0.00 0.00 0.00 3.16
6469 6686 0.984230 TCTTCCGCCTGTCTCCATTT 59.016 50.000 0.00 0.00 0.00 2.32
6470 6687 1.351017 TCTTCCGCCTGTCTCCATTTT 59.649 47.619 0.00 0.00 0.00 1.82
6471 6688 2.162681 CTTCCGCCTGTCTCCATTTTT 58.837 47.619 0.00 0.00 0.00 1.94
6472 6689 3.008594 TCTTCCGCCTGTCTCCATTTTTA 59.991 43.478 0.00 0.00 0.00 1.52
6473 6690 3.644966 TCCGCCTGTCTCCATTTTTAT 57.355 42.857 0.00 0.00 0.00 1.40
6474 6691 3.963129 TCCGCCTGTCTCCATTTTTATT 58.037 40.909 0.00 0.00 0.00 1.40
6475 6692 3.945285 TCCGCCTGTCTCCATTTTTATTC 59.055 43.478 0.00 0.00 0.00 1.75
6476 6693 3.066760 CCGCCTGTCTCCATTTTTATTCC 59.933 47.826 0.00 0.00 0.00 3.01
6477 6694 3.242739 CGCCTGTCTCCATTTTTATTCCG 60.243 47.826 0.00 0.00 0.00 4.30
6478 6695 3.066760 GCCTGTCTCCATTTTTATTCCGG 59.933 47.826 0.00 0.00 0.00 5.14
6479 6696 3.066760 CCTGTCTCCATTTTTATTCCGGC 59.933 47.826 0.00 0.00 0.00 6.13
6480 6697 3.947834 CTGTCTCCATTTTTATTCCGGCT 59.052 43.478 0.00 0.00 0.00 5.52
6481 6698 4.340617 TGTCTCCATTTTTATTCCGGCTT 58.659 39.130 0.00 0.00 0.00 4.35
6500 6717 1.257743 TTCTTCGTCTGTCCTCCCAG 58.742 55.000 0.00 0.00 0.00 4.45
6552 6806 8.568676 TGGTTTATTATGACCGATTTTTCTCA 57.431 30.769 0.00 0.00 38.81 3.27
6560 6814 4.758165 TGACCGATTTTTCTCAGTTTACCC 59.242 41.667 0.00 0.00 0.00 3.69
6571 6825 0.324943 AGTTTACCCTGCGCTGACAT 59.675 50.000 16.65 3.15 0.00 3.06
6572 6826 0.447801 GTTTACCCTGCGCTGACATG 59.552 55.000 16.65 3.93 0.00 3.21
6587 6841 4.261741 GCTGACATGGCCCAACATATAAAG 60.262 45.833 0.00 0.00 0.00 1.85
6589 6843 3.636300 GACATGGCCCAACATATAAAGCA 59.364 43.478 0.00 0.00 0.00 3.91
6596 6850 4.798387 GCCCAACATATAAAGCAAGAAACG 59.202 41.667 0.00 0.00 0.00 3.60
6610 6864 0.034896 GAAACGTGCTCTCCTCCCAA 59.965 55.000 0.00 0.00 0.00 4.12
6616 6870 0.620556 TGCTCTCCTCCCAATGAACC 59.379 55.000 0.00 0.00 0.00 3.62
6622 6876 0.183731 CCTCCCAATGAACCCTAGCC 59.816 60.000 0.00 0.00 0.00 3.93
6627 6881 0.394352 CAATGAACCCTAGCCGCCTT 60.394 55.000 0.00 0.00 0.00 4.35
6628 6882 1.134220 CAATGAACCCTAGCCGCCTTA 60.134 52.381 0.00 0.00 0.00 2.69
6634 6888 1.446366 CCTAGCCGCCTTACCCTTC 59.554 63.158 0.00 0.00 0.00 3.46
6636 6890 1.002533 TAGCCGCCTTACCCTTCCT 59.997 57.895 0.00 0.00 0.00 3.36
6637 6891 1.047034 TAGCCGCCTTACCCTTCCTC 61.047 60.000 0.00 0.00 0.00 3.71
6638 6892 2.666098 GCCGCCTTACCCTTCCTCA 61.666 63.158 0.00 0.00 0.00 3.86
6639 6893 1.522569 CCGCCTTACCCTTCCTCAG 59.477 63.158 0.00 0.00 0.00 3.35
6640 6894 1.265454 CCGCCTTACCCTTCCTCAGT 61.265 60.000 0.00 0.00 0.00 3.41
6646 6900 1.255667 TACCCTTCCTCAGTGCGTCC 61.256 60.000 0.00 0.00 0.00 4.79
6647 6901 2.266055 CCTTCCTCAGTGCGTCCC 59.734 66.667 0.00 0.00 0.00 4.46
6651 6905 2.202797 CCTCAGTGCGTCCCGATG 60.203 66.667 0.00 0.00 0.00 3.84
6692 6946 8.108378 TCCCATCCTCCAACTTATTGTTATTA 57.892 34.615 0.00 0.00 37.07 0.98
6726 7347 9.599866 TTGATACAACTGACATAGTTCCTTATG 57.400 33.333 0.00 0.00 46.55 1.90
6814 7446 7.247728 TGAATACCAAATTTTGCAGTATCGTC 58.752 34.615 3.50 4.31 0.00 4.20
6816 7448 2.845967 CCAAATTTTGCAGTATCGTCGC 59.154 45.455 3.50 0.00 0.00 5.19
6817 7449 2.825086 AATTTTGCAGTATCGTCGCC 57.175 45.000 0.00 0.00 0.00 5.54
6818 7450 2.024176 ATTTTGCAGTATCGTCGCCT 57.976 45.000 0.00 0.00 0.00 5.52
6857 7508 1.299976 GGGTTTCAGATGTCGCCCT 59.700 57.895 0.00 0.00 33.58 5.19
6889 7540 1.552792 CGGGGGCCAATGTGTATTTTT 59.447 47.619 4.39 0.00 0.00 1.94
6890 7541 2.418060 CGGGGGCCAATGTGTATTTTTC 60.418 50.000 4.39 0.00 0.00 2.29
6891 7542 2.837591 GGGGGCCAATGTGTATTTTTCT 59.162 45.455 4.39 0.00 0.00 2.52
6892 7543 4.027437 GGGGGCCAATGTGTATTTTTCTA 58.973 43.478 4.39 0.00 0.00 2.10
6893 7544 4.142026 GGGGGCCAATGTGTATTTTTCTAC 60.142 45.833 4.39 0.00 0.00 2.59
6894 7545 4.709886 GGGGCCAATGTGTATTTTTCTACT 59.290 41.667 4.39 0.00 0.00 2.57
6895 7546 5.163550 GGGGCCAATGTGTATTTTTCTACTC 60.164 44.000 4.39 0.00 0.00 2.59
6896 7547 5.163550 GGGCCAATGTGTATTTTTCTACTCC 60.164 44.000 4.39 0.00 0.00 3.85
6897 7548 5.163550 GGCCAATGTGTATTTTTCTACTCCC 60.164 44.000 0.00 0.00 0.00 4.30
6898 7549 5.652452 GCCAATGTGTATTTTTCTACTCCCT 59.348 40.000 0.00 0.00 0.00 4.20
6899 7550 6.183360 GCCAATGTGTATTTTTCTACTCCCTC 60.183 42.308 0.00 0.00 0.00 4.30
6900 7551 6.318900 CCAATGTGTATTTTTCTACTCCCTCC 59.681 42.308 0.00 0.00 0.00 4.30
6901 7552 5.080969 TGTGTATTTTTCTACTCCCTCCG 57.919 43.478 0.00 0.00 0.00 4.63
6902 7553 4.529377 TGTGTATTTTTCTACTCCCTCCGT 59.471 41.667 0.00 0.00 0.00 4.69
6903 7554 5.012354 TGTGTATTTTTCTACTCCCTCCGTT 59.988 40.000 0.00 0.00 0.00 4.44
6904 7555 5.579904 GTGTATTTTTCTACTCCCTCCGTTC 59.420 44.000 0.00 0.00 0.00 3.95
6905 7556 3.690475 TTTTTCTACTCCCTCCGTTCC 57.310 47.619 0.00 0.00 0.00 3.62
6906 7557 2.617840 TTTCTACTCCCTCCGTTCCT 57.382 50.000 0.00 0.00 0.00 3.36
6907 7558 3.744940 TTTCTACTCCCTCCGTTCCTA 57.255 47.619 0.00 0.00 0.00 2.94
6908 7559 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
6909 7560 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
6910 7561 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
6911 7562 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
6912 7563 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
6913 7564 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
6914 7565 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
6915 7566 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
6916 7567 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
6917 7568 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
6918 7569 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
6919 7570 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
6920 7571 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
6921 7572 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
6922 7573 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
6938 7589 8.491045 AAGTCTTTTTAGGGATTTCAAATGGA 57.509 30.769 0.00 0.00 0.00 3.41
6939 7590 7.896811 AGTCTTTTTAGGGATTTCAAATGGAC 58.103 34.615 0.00 0.00 0.00 4.02
6940 7591 7.730332 AGTCTTTTTAGGGATTTCAAATGGACT 59.270 33.333 0.00 0.00 0.00 3.85
6941 7592 9.020731 GTCTTTTTAGGGATTTCAAATGGACTA 57.979 33.333 0.00 0.00 0.00 2.59
6942 7593 9.020731 TCTTTTTAGGGATTTCAAATGGACTAC 57.979 33.333 0.00 0.00 0.00 2.73
6943 7594 7.712204 TTTTAGGGATTTCAAATGGACTACC 57.288 36.000 0.00 0.00 0.00 3.18
6956 7607 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
6957 7608 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
6958 7609 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
6959 7610 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
6960 7611 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.945668 GGATTTGTTGGCTGCCTACTAG 59.054 50.000 28.44 0.00 30.94 2.57
1 2 2.576191 AGGATTTGTTGGCTGCCTACTA 59.424 45.455 28.44 20.95 30.94 1.82
2 3 1.355720 AGGATTTGTTGGCTGCCTACT 59.644 47.619 28.44 12.97 30.94 2.57
3 4 1.839424 AGGATTTGTTGGCTGCCTAC 58.161 50.000 23.52 23.52 0.00 3.18
4 5 3.201930 TCATAGGATTTGTTGGCTGCCTA 59.798 43.478 21.03 9.91 33.02 3.93
5 6 2.025037 TCATAGGATTTGTTGGCTGCCT 60.025 45.455 21.03 0.00 0.00 4.75
6 7 2.378038 TCATAGGATTTGTTGGCTGCC 58.622 47.619 12.87 12.87 0.00 4.85
7 8 4.660789 AATCATAGGATTTGTTGGCTGC 57.339 40.909 0.00 0.00 40.87 5.25
17 18 6.196918 TCTGCTGATGGAAATCATAGGATT 57.803 37.500 0.00 0.00 45.57 3.01
47 48 2.350895 CCGGCCACAACATGAGGA 59.649 61.111 2.24 0.00 28.90 3.71
49 50 2.981560 GCACCGGCCACAACATGAG 61.982 63.158 0.00 0.00 0.00 2.90
75 76 2.284405 GGACCCCAACCTCGAGGA 60.284 66.667 37.69 0.00 38.94 3.71
94 95 3.770040 TGTCGGCATGGGTCCTCG 61.770 66.667 0.00 0.00 0.00 4.63
115 116 2.704193 GCGTTCGTGAAGTCCGACG 61.704 63.158 0.00 0.00 33.41 5.12
122 123 2.325082 CCCCTTGGCGTTCGTGAAG 61.325 63.158 0.00 0.00 0.00 3.02
147 148 1.305219 TAGCAGGAACGGTGCAATGC 61.305 55.000 0.00 0.00 43.82 3.56
154 155 1.288127 GTGACGTAGCAGGAACGGT 59.712 57.895 0.00 0.00 44.48 4.83
165 166 0.541063 TCAGCCAAGGAGGTGACGTA 60.541 55.000 0.00 0.00 40.61 3.57
166 167 1.837051 TCAGCCAAGGAGGTGACGT 60.837 57.895 0.00 0.00 40.61 4.34
180 181 0.741915 CTAACCGAGGAGAGGTCAGC 59.258 60.000 0.00 0.00 41.95 4.26
188 189 0.872021 GCATCGTGCTAACCGAGGAG 60.872 60.000 0.00 0.00 40.96 3.69
202 203 3.308008 CGTCGTCGCAGAGCATCG 61.308 66.667 0.00 0.00 42.67 3.84
218 219 2.023318 CGGTAGTGGTAGCTCCTCG 58.977 63.158 0.00 0.00 37.07 4.63
232 233 0.892358 CTACCTAGATGGCCGCGGTA 60.892 60.000 28.70 17.12 40.22 4.02
243 244 0.183014 CGCCTCCTCCACTACCTAGA 59.817 60.000 0.00 0.00 0.00 2.43
271 272 1.766143 GCCACTAGCAATCGCGAAGG 61.766 60.000 15.24 9.75 45.49 3.46
284 285 1.001760 GGAGGAGGAGGTGCCACTA 59.998 63.158 0.00 0.00 40.02 2.74
287 288 2.284921 CTGGAGGAGGAGGTGCCA 60.285 66.667 0.00 0.00 40.02 4.92
288 289 3.086600 CCTGGAGGAGGAGGTGCC 61.087 72.222 0.00 0.00 46.33 5.01
301 302 0.751277 TTGTGTGTGCAAGGTCCTGG 60.751 55.000 0.00 0.00 0.00 4.45
302 303 1.001048 CATTGTGTGTGCAAGGTCCTG 60.001 52.381 0.00 0.00 0.00 3.86
315 316 1.068474 GACGAGCTAACGCATTGTGT 58.932 50.000 0.00 0.00 39.10 3.72
319 320 1.200483 CATCGACGAGCTAACGCATT 58.800 50.000 3.01 0.00 39.10 3.56
341 342 2.427245 AAGGAGCTAGCATCGCGGT 61.427 57.895 18.83 0.00 0.00 5.68
343 344 0.807667 AACAAGGAGCTAGCATCGCG 60.808 55.000 18.83 0.00 0.00 5.87
345 346 1.929836 GTCAACAAGGAGCTAGCATCG 59.070 52.381 18.83 2.79 0.00 3.84
352 353 1.071471 CCCACGTCAACAAGGAGCT 59.929 57.895 0.00 0.00 0.00 4.09
401 402 4.143333 CTCAGGTACCGTGGGCCG 62.143 72.222 6.18 0.00 0.00 6.13
402 403 4.468689 GCTCAGGTACCGTGGGCC 62.469 72.222 19.79 0.00 35.15 5.80
403 404 4.814294 CGCTCAGGTACCGTGGGC 62.814 72.222 20.27 20.27 38.11 5.36
404 405 2.351336 GATCGCTCAGGTACCGTGGG 62.351 65.000 6.18 6.56 0.00 4.61
405 406 1.065928 GATCGCTCAGGTACCGTGG 59.934 63.158 6.18 0.20 0.00 4.94
406 407 1.298413 CGATCGCTCAGGTACCGTG 60.298 63.158 6.18 5.65 0.00 4.94
407 408 3.108343 CGATCGCTCAGGTACCGT 58.892 61.111 6.18 0.00 0.00 4.83
422 423 1.146930 GGAGCCCATGATTGAGCGA 59.853 57.895 0.00 0.00 0.00 4.93
428 429 0.851469 AGCAGATGGAGCCCATGATT 59.149 50.000 10.99 0.00 45.26 2.57
429 430 0.400975 GAGCAGATGGAGCCCATGAT 59.599 55.000 10.99 0.00 45.26 2.45
441 442 1.752436 CGAGGAGTACCAGGAGCAGAT 60.752 57.143 0.00 0.00 38.94 2.90
444 445 0.680280 GACGAGGAGTACCAGGAGCA 60.680 60.000 0.00 0.00 38.94 4.26
452 453 1.025647 AGGCGACAGACGAGGAGTAC 61.026 60.000 0.00 0.00 45.77 2.73
491 498 1.649664 CAATGACGAGCAAGAGGAGG 58.350 55.000 0.00 0.00 0.00 4.30
493 500 1.266178 TCCAATGACGAGCAAGAGGA 58.734 50.000 0.00 0.00 0.00 3.71
494 501 2.005451 CTTCCAATGACGAGCAAGAGG 58.995 52.381 0.00 0.00 0.00 3.69
498 505 3.055891 TCATCTCTTCCAATGACGAGCAA 60.056 43.478 0.00 0.00 36.94 3.91
548 555 4.873129 CATCGACCTCCACGGCGG 62.873 72.222 13.24 0.00 35.61 6.13
587 594 1.883678 TGGATCTGGATCTTGGAGCA 58.116 50.000 9.96 0.00 37.92 4.26
606 613 4.227134 CTCACAGGCCGCGGCTAT 62.227 66.667 45.23 32.64 41.60 2.97
628 635 2.701780 TTCACGCCTCTCCGCTCTC 61.702 63.158 0.00 0.00 0.00 3.20
733 745 1.446099 CGGACATGACTCCACACGG 60.446 63.158 0.00 0.00 0.00 4.94
784 796 1.107114 TGTCCGTGCAAAATGGTTGT 58.893 45.000 0.00 0.00 36.21 3.32
790 802 5.391416 CCAAAAACTTTTGTCCGTGCAAAAT 60.391 36.000 12.61 0.44 44.25 1.82
794 806 2.231478 TCCAAAAACTTTTGTCCGTGCA 59.769 40.909 12.61 0.00 44.52 4.57
797 809 4.993029 TCATCCAAAAACTTTTGTCCGT 57.007 36.364 12.61 0.00 44.52 4.69
802 814 9.689976 AAAAACCTTTTCATCCAAAAACTTTTG 57.310 25.926 7.77 7.77 45.34 2.44
804 816 8.303156 CCAAAAACCTTTTCATCCAAAAACTTT 58.697 29.630 0.00 0.00 33.40 2.66
818 830 4.220602 CCCGATCTCATCCAAAAACCTTTT 59.779 41.667 0.00 0.00 0.00 2.27
820 832 3.245264 ACCCGATCTCATCCAAAAACCTT 60.245 43.478 0.00 0.00 0.00 3.50
828 841 0.536724 CACACACCCGATCTCATCCA 59.463 55.000 0.00 0.00 0.00 3.41
831 844 0.537188 GTCCACACACCCGATCTCAT 59.463 55.000 0.00 0.00 0.00 2.90
864 877 1.764134 ACTTTGTAGGTGTTCGGACCA 59.236 47.619 0.00 0.00 38.63 4.02
871 884 5.020795 ACCAGGAAAAACTTTGTAGGTGTT 58.979 37.500 0.00 0.00 0.00 3.32
888 901 3.579586 ACGGAATGTACTGTAAACCAGGA 59.420 43.478 0.00 0.00 46.06 3.86
914 927 7.652105 TCTTATCGATTCTTGTCTAAAATCCCG 59.348 37.037 1.71 0.00 0.00 5.14
915 928 8.888579 TCTTATCGATTCTTGTCTAAAATCCC 57.111 34.615 1.71 0.00 0.00 3.85
921 934 6.802348 GCGCTATCTTATCGATTCTTGTCTAA 59.198 38.462 1.71 0.00 33.48 2.10
922 935 6.315551 GCGCTATCTTATCGATTCTTGTCTA 58.684 40.000 1.71 0.00 33.48 2.59
933 946 2.046283 TCCAACGCGCTATCTTATCG 57.954 50.000 5.73 0.00 0.00 2.92
940 953 5.344128 CGTATTTTACTATCCAACGCGCTAT 59.656 40.000 5.73 0.00 0.00 2.97
943 956 3.780054 CGTATTTTACTATCCAACGCGC 58.220 45.455 5.73 0.00 0.00 6.86
946 959 6.193959 GCTTTTGCGTATTTTACTATCCAACG 59.806 38.462 0.00 0.00 34.86 4.10
1141 1162 2.586357 GATGCGAGGGCGAAGGAC 60.586 66.667 0.00 0.00 44.10 3.85
1144 1165 4.918201 GGGGATGCGAGGGCGAAG 62.918 72.222 0.00 0.00 44.10 3.79
1171 1192 1.305802 AGATGGGTGAGGCACGGTA 60.306 57.895 0.00 0.00 34.83 4.02
1227 1248 0.683504 GGGCCTCTCCTTCGTCTGTA 60.684 60.000 0.84 0.00 34.39 2.74
1230 1251 2.364448 GGGGCCTCTCCTTCGTCT 60.364 66.667 0.84 0.00 34.39 4.18
1236 1257 4.787280 CCTCGTGGGGCCTCTCCT 62.787 72.222 3.07 0.00 34.39 3.69
1377 1398 1.754226 TGGGTTGAACCAGACAAAAGC 59.246 47.619 17.27 0.00 41.02 3.51
1380 1401 2.091610 TCCATGGGTTGAACCAGACAAA 60.092 45.455 17.27 0.00 45.20 2.83
1388 1409 2.700773 GCGGCTCCATGGGTTGAAC 61.701 63.158 13.02 0.00 0.00 3.18
1408 1429 4.823989 CAGATCCCATCCCACAAATAAGTC 59.176 45.833 0.00 0.00 0.00 3.01
1684 1708 7.567771 GCTCGCATGAAATACATTGTACTCTAC 60.568 40.741 0.00 0.00 37.07 2.59
1685 1709 6.420903 GCTCGCATGAAATACATTGTACTCTA 59.579 38.462 0.00 0.00 37.07 2.43
1686 1710 5.235186 GCTCGCATGAAATACATTGTACTCT 59.765 40.000 0.00 0.00 37.07 3.24
1687 1711 5.006649 TGCTCGCATGAAATACATTGTACTC 59.993 40.000 0.00 0.22 37.07 2.59
1688 1712 4.875536 TGCTCGCATGAAATACATTGTACT 59.124 37.500 0.00 0.00 37.07 2.73
1718 1742 7.069852 CATGTACTCTTTTCATGGAGAAGTG 57.930 40.000 4.00 4.59 37.57 3.16
1736 1760 2.351726 CCTTGCGAAACTAGCCATGTAC 59.648 50.000 0.00 0.00 0.00 2.90
1737 1761 2.235155 TCCTTGCGAAACTAGCCATGTA 59.765 45.455 0.00 0.00 0.00 2.29
1739 1763 1.737838 TCCTTGCGAAACTAGCCATG 58.262 50.000 0.00 0.00 0.00 3.66
1740 1764 2.489938 TTCCTTGCGAAACTAGCCAT 57.510 45.000 0.00 0.00 0.00 4.40
1743 1767 5.230097 GCAATATTTTCCTTGCGAAACTAGC 59.770 40.000 0.00 0.00 40.23 3.42
1753 1777 6.589523 TCGAATGGTTTGCAATATTTTCCTTG 59.410 34.615 0.00 0.00 0.00 3.61
1790 1814 2.665165 ACAAAGTTTGGATGGCTGTGA 58.335 42.857 19.45 0.00 34.12 3.58
1820 1844 1.963338 GCAGCGGAGTGAAAGCAGT 60.963 57.895 0.00 0.00 0.00 4.40
1834 1858 2.485426 TCTGACAAGTATTTGCTGCAGC 59.515 45.455 31.89 31.89 37.85 5.25
2056 2080 5.015515 TGGCAACTTTGGATCAACATATGA 58.984 37.500 10.38 0.00 39.38 2.15
2157 2181 0.670162 CAATAAATGGCTGGCGAGGG 59.330 55.000 0.00 0.00 0.00 4.30
2199 2223 4.262894 GGTAGTTTCTCCATCAGTTCCACA 60.263 45.833 0.00 0.00 0.00 4.17
2341 2367 4.276926 ACAAACAGATTCCAGAAAGTGCTC 59.723 41.667 0.00 0.00 0.00 4.26
2377 2411 5.536161 ACCATAGCTGCAATATTAAGTTGGG 59.464 40.000 1.02 10.15 0.00 4.12
2538 2572 2.416547 GACATGCATGCTTTCGTACACT 59.583 45.455 26.53 1.90 0.00 3.55
2545 2579 2.359848 TGGCTATGACATGCATGCTTTC 59.640 45.455 26.53 16.69 37.87 2.62
2563 2597 4.893608 ACCAAACAAACAATAATCCTGGC 58.106 39.130 0.00 0.00 0.00 4.85
2567 2601 5.525378 TGTGCAACCAAACAAACAATAATCC 59.475 36.000 0.00 0.00 34.36 3.01
2592 2626 5.133221 AGTTTTGTGGCTGAAGACAATACT 58.867 37.500 0.00 0.00 38.64 2.12
2771 2805 3.719924 CTGCTAGCAGAATCCTTCTCTG 58.280 50.000 36.47 8.12 46.30 3.35
2951 2988 5.538877 ACTACTCCCTCCATCCTGAATTAA 58.461 41.667 0.00 0.00 0.00 1.40
3044 3081 6.015519 CCCCTCTTTACATTTGTTTCATGACA 60.016 38.462 0.00 0.00 0.00 3.58
3048 3085 5.245977 CCACCCCTCTTTACATTTGTTTCAT 59.754 40.000 0.00 0.00 0.00 2.57
3051 3088 4.343814 CACCACCCCTCTTTACATTTGTTT 59.656 41.667 0.00 0.00 0.00 2.83
3140 3178 7.881232 GTCTAGACAGGACATAGAGCTATTACT 59.119 40.741 18.20 0.00 34.23 2.24
3153 3191 0.614979 GCCCAGGTCTAGACAGGACA 60.615 60.000 26.58 0.00 35.61 4.02
3292 3331 5.334028 CCGAAATCATGAAAAACAAAAGCCC 60.334 40.000 0.00 0.00 0.00 5.19
3298 3337 3.312828 CGCCCGAAATCATGAAAAACAA 58.687 40.909 0.00 0.00 0.00 2.83
3379 3418 3.754586 AACTGCAAGCCCAAGCCCA 62.755 57.895 0.00 0.00 41.25 5.36
3501 3540 4.164204 AGCCCAGTAGATAGGAAATCTCC 58.836 47.826 0.00 0.00 42.81 3.71
3505 3544 5.094569 ACCTAGCCCAGTAGATAGGAAAT 57.905 43.478 9.69 0.00 38.53 2.17
3508 3547 5.459241 CCTTAACCTAGCCCAGTAGATAGGA 60.459 48.000 9.69 0.00 38.53 2.94
3540 3579 1.742768 GGAGGGAGATACACGGCAG 59.257 63.158 0.00 0.00 0.00 4.85
3542 3581 2.508751 GGGGAGGGAGATACACGGC 61.509 68.421 0.00 0.00 0.00 5.68
3592 3631 2.969628 AACTAAGCGGATGAGGAGTG 57.030 50.000 0.00 0.00 0.00 3.51
3594 3633 4.657436 ACTAAACTAAGCGGATGAGGAG 57.343 45.455 0.00 0.00 0.00 3.69
3671 3710 1.613437 GGAGATCTGTGCTCTCTAGGC 59.387 57.143 0.00 0.00 39.30 3.93
3693 3732 1.001378 ACTTCAACAATCTGCGGTTGC 60.001 47.619 7.50 0.00 43.06 4.17
3694 3733 2.605338 CCACTTCAACAATCTGCGGTTG 60.605 50.000 0.00 0.00 44.35 3.77
3717 3757 4.384647 GCATAAGGGACAAGGATCAAGAGT 60.385 45.833 0.00 0.00 0.00 3.24
3763 3824 4.324991 GGGGTCCGTCTTGGCGTT 62.325 66.667 0.00 0.00 37.80 4.84
3774 3835 0.471022 TCTTGGGCTTTTTGGGGTCC 60.471 55.000 0.00 0.00 0.00 4.46
3781 3842 0.031616 TGGGGTGTCTTGGGCTTTTT 60.032 50.000 0.00 0.00 0.00 1.94
3816 3877 4.597507 ACCTTTCTCTTGAGGTGGTAATGA 59.402 41.667 0.00 0.00 44.40 2.57
3817 3878 4.911390 ACCTTTCTCTTGAGGTGGTAATG 58.089 43.478 0.00 0.00 44.40 1.90
3818 3879 5.584551 AACCTTTCTCTTGAGGTGGTAAT 57.415 39.130 0.00 0.00 45.32 1.89
3836 3897 5.005740 TGATATGTCGTATAGCGGTAACCT 58.994 41.667 0.00 0.00 41.72 3.50
3844 3905 5.648526 TCCTTCTCCTGATATGTCGTATAGC 59.351 44.000 0.00 0.00 0.00 2.97
3846 3907 6.659668 CCTTCCTTCTCCTGATATGTCGTATA 59.340 42.308 0.00 0.00 0.00 1.47
3858 3919 6.546428 TTTGTATAGTCCTTCCTTCTCCTG 57.454 41.667 0.00 0.00 0.00 3.86
3859 3920 8.855804 TTATTTGTATAGTCCTTCCTTCTCCT 57.144 34.615 0.00 0.00 0.00 3.69
3894 3962 2.480845 GTTCATGACACGTATAGGGCC 58.519 52.381 0.00 0.00 0.00 5.80
3903 3971 3.487202 CGGGCGGTTCATGACACG 61.487 66.667 12.51 12.51 0.00 4.49
3909 3977 3.061848 CCTTTGCGGGCGGTTCAT 61.062 61.111 0.00 0.00 0.00 2.57
3916 3984 1.285950 GAAACAGACCTTTGCGGGC 59.714 57.895 0.00 0.00 43.35 6.13
3920 3988 1.305201 TCACCGAAACAGACCTTTGC 58.695 50.000 0.00 0.00 0.00 3.68
4094 4162 6.448006 CGATTGGGTAGACATAGGTTTAGAG 58.552 44.000 0.00 0.00 0.00 2.43
4407 4475 3.975168 AAGTTTACACTGCCGTCCTAT 57.025 42.857 0.00 0.00 31.60 2.57
4517 4585 2.171003 GGGGTCCAGAAATCCAAAGTG 58.829 52.381 0.00 0.00 0.00 3.16
4863 4934 5.712917 ACCTTCTACTATACCTGCTGCTATC 59.287 44.000 0.00 0.00 0.00 2.08
4974 5045 8.361139 AGATAATACAGTCCCGAAGATAAACTG 58.639 37.037 0.00 0.00 42.33 3.16
5031 5102 7.559533 TGCTCCCATCTGCAAATTAATAAGTTA 59.440 33.333 0.00 0.00 36.15 2.24
5173 5244 7.255173 CCTGATTCATTGAATCCAAGATCTCAC 60.255 40.741 28.13 7.77 45.37 3.51
5225 5296 4.530553 ACCAACCATACAGGCGATATATCA 59.469 41.667 13.11 0.00 43.14 2.15
5254 5325 6.818644 GCAACCTGAAGTGAGAGACAATATAA 59.181 38.462 0.00 0.00 0.00 0.98
5487 5558 6.919721 TCCAAAATGGTAGCAAAAGATGTAC 58.080 36.000 0.00 0.00 39.03 2.90
5577 5648 5.240623 TCCGAAATAAAAGACTGTGTGCAAT 59.759 36.000 0.00 0.00 0.00 3.56
5578 5649 4.576873 TCCGAAATAAAAGACTGTGTGCAA 59.423 37.500 0.00 0.00 0.00 4.08
5585 5656 7.915397 CCCATGTATTTCCGAAATAAAAGACTG 59.085 37.037 13.93 5.58 35.29 3.51
5612 5683 8.626917 TGGTATATTTTAGGTCCCTCAAGTAA 57.373 34.615 0.00 0.00 0.00 2.24
5738 5809 5.927281 TCCGAACTTTACTATAAGCACCT 57.073 39.130 0.00 0.00 0.00 4.00
5887 5963 9.396022 CTCACCAGTAATGGTTATAAAACTCAT 57.604 33.333 13.21 0.00 40.85 2.90
5990 6183 2.386661 AGTATGGCAGAACAGGTTCG 57.613 50.000 6.52 3.70 43.97 3.95
6069 6262 3.518634 TCATGATTCGACGGATTGACA 57.481 42.857 0.00 0.00 0.00 3.58
6078 6271 5.813717 TCAAAGCAATCATCATGATTCGAC 58.186 37.500 10.13 3.49 43.03 4.20
6113 6306 5.234466 ACTCTTCATAGGAGTGCAAAGTT 57.766 39.130 0.00 0.00 41.76 2.66
6115 6308 7.678218 GCATAAACTCTTCATAGGAGTGCAAAG 60.678 40.741 0.00 0.00 42.39 2.77
6156 6349 2.049894 TGCTGCATTTGCGCACAG 60.050 55.556 11.12 15.94 45.83 3.66
6162 6355 4.778534 ATGTATATCCTGCTGCATTTGC 57.221 40.909 1.31 0.00 42.50 3.68
6196 6390 4.081531 TGGAGCATTGTTCCCATTCAATTC 60.082 41.667 15.97 0.00 32.85 2.17
6438 6655 2.554032 AGGCGGAAGAAAATTGACACAG 59.446 45.455 0.00 0.00 0.00 3.66
6463 6680 5.392595 CGAAGAAAGCCGGAATAAAAATGGA 60.393 40.000 5.05 0.00 0.00 3.41
6464 6681 4.798387 CGAAGAAAGCCGGAATAAAAATGG 59.202 41.667 5.05 0.00 0.00 3.16
6465 6682 5.399013 ACGAAGAAAGCCGGAATAAAAATG 58.601 37.500 5.05 0.00 0.00 2.32
6466 6683 5.414765 AGACGAAGAAAGCCGGAATAAAAAT 59.585 36.000 5.05 0.00 0.00 1.82
6467 6684 4.758165 AGACGAAGAAAGCCGGAATAAAAA 59.242 37.500 5.05 0.00 0.00 1.94
6468 6685 4.153475 CAGACGAAGAAAGCCGGAATAAAA 59.847 41.667 5.05 0.00 0.00 1.52
6469 6686 3.682858 CAGACGAAGAAAGCCGGAATAAA 59.317 43.478 5.05 0.00 0.00 1.40
6470 6687 3.259064 CAGACGAAGAAAGCCGGAATAA 58.741 45.455 5.05 0.00 0.00 1.40
6471 6688 2.232941 ACAGACGAAGAAAGCCGGAATA 59.767 45.455 5.05 0.00 0.00 1.75
6472 6689 1.002087 ACAGACGAAGAAAGCCGGAAT 59.998 47.619 5.05 0.00 0.00 3.01
6473 6690 0.391597 ACAGACGAAGAAAGCCGGAA 59.608 50.000 5.05 0.00 0.00 4.30
6474 6691 0.038526 GACAGACGAAGAAAGCCGGA 60.039 55.000 5.05 0.00 0.00 5.14
6475 6692 1.014564 GGACAGACGAAGAAAGCCGG 61.015 60.000 0.00 0.00 0.00 6.13
6476 6693 0.038159 AGGACAGACGAAGAAAGCCG 60.038 55.000 0.00 0.00 0.00 5.52
6477 6694 1.673329 GGAGGACAGACGAAGAAAGCC 60.673 57.143 0.00 0.00 0.00 4.35
6478 6695 1.673329 GGGAGGACAGACGAAGAAAGC 60.673 57.143 0.00 0.00 0.00 3.51
6479 6696 1.618837 TGGGAGGACAGACGAAGAAAG 59.381 52.381 0.00 0.00 0.00 2.62
6480 6697 1.618837 CTGGGAGGACAGACGAAGAAA 59.381 52.381 0.00 0.00 40.97 2.52
6481 6698 1.257743 CTGGGAGGACAGACGAAGAA 58.742 55.000 0.00 0.00 40.97 2.52
6500 6717 3.412879 GAGAGGGGAGCACGTACGC 62.413 68.421 16.72 0.00 0.00 4.42
6528 6782 8.674607 ACTGAGAAAAATCGGTCATAATAAACC 58.325 33.333 0.00 0.00 33.39 3.27
6533 6787 8.674607 GGTAAACTGAGAAAAATCGGTCATAAT 58.325 33.333 0.00 0.00 37.84 1.28
6534 6788 7.120138 GGGTAAACTGAGAAAAATCGGTCATAA 59.880 37.037 0.00 0.00 37.84 1.90
6538 6792 5.001874 AGGGTAAACTGAGAAAAATCGGTC 58.998 41.667 0.00 0.00 37.84 4.79
6552 6806 0.324943 ATGTCAGCGCAGGGTAAACT 59.675 50.000 11.47 0.00 0.00 2.66
6571 6825 3.974719 TCTTGCTTTATATGTTGGGCCA 58.025 40.909 0.00 0.00 0.00 5.36
6572 6826 5.109210 GTTTCTTGCTTTATATGTTGGGCC 58.891 41.667 0.00 0.00 0.00 5.80
6587 6841 0.793250 GAGGAGAGCACGTTTCTTGC 59.207 55.000 1.21 0.00 40.52 4.01
6589 6843 0.321996 GGGAGGAGAGCACGTTTCTT 59.678 55.000 1.21 0.00 0.00 2.52
6596 6850 1.680249 GGTTCATTGGGAGGAGAGCAC 60.680 57.143 0.00 0.00 0.00 4.40
6610 6864 0.468648 GTAAGGCGGCTAGGGTTCAT 59.531 55.000 13.71 0.00 0.00 2.57
6616 6870 1.446366 GAAGGGTAAGGCGGCTAGG 59.554 63.158 13.71 0.00 0.00 3.02
6622 6876 0.108138 CACTGAGGAAGGGTAAGGCG 60.108 60.000 0.00 0.00 0.00 5.52
6627 6881 1.255667 GGACGCACTGAGGAAGGGTA 61.256 60.000 0.00 0.00 0.00 3.69
6628 6882 2.584391 GGACGCACTGAGGAAGGGT 61.584 63.158 0.00 0.00 0.00 4.34
6647 6901 3.680620 ATGGGGTGGACGTGCATCG 62.681 63.158 14.45 7.07 46.00 3.84
6651 6905 2.125106 GAGATGGGGTGGACGTGC 60.125 66.667 0.00 0.00 0.00 5.34
6653 6907 2.687566 GGGAGATGGGGTGGACGT 60.688 66.667 0.00 0.00 0.00 4.34
6663 6917 4.989875 ATAAGTTGGAGGATGGGAGATG 57.010 45.455 0.00 0.00 0.00 2.90
6692 6946 9.944376 ACTATGTCAGTTGTATCAAAATGTACT 57.056 29.630 0.00 0.00 31.59 2.73
6729 7350 6.837048 TGCATGTACTGTAGGAGTAATCCTTA 59.163 38.462 18.34 6.38 38.96 2.69
6746 7367 2.478514 TGTGTGACGAACATGCATGTAC 59.521 45.455 31.55 24.27 41.97 2.90
6748 7369 1.264020 GTGTGTGACGAACATGCATGT 59.736 47.619 26.61 26.61 41.97 3.21
6749 7370 1.263752 TGTGTGTGACGAACATGCATG 59.736 47.619 25.09 25.09 41.97 4.06
6789 7421 7.151999 ACGATACTGCAAAATTTGGTATTCA 57.848 32.000 7.89 0.00 0.00 2.57
6794 7426 3.669557 GCGACGATACTGCAAAATTTGGT 60.670 43.478 7.89 0.67 0.00 3.67
6828 7479 0.955919 CTGAAACCCAGCCGTTCCTC 60.956 60.000 0.00 0.00 35.89 3.71
6889 7540 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
6890 7541 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
6891 7542 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
6892 7543 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
6893 7544 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
6894 7545 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
6895 7546 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
6896 7547 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
6912 7563 9.594936 TCCATTTGAAATCCCTAAAAAGACTTA 57.405 29.630 0.00 0.00 0.00 2.24
6913 7564 8.367911 GTCCATTTGAAATCCCTAAAAAGACTT 58.632 33.333 0.00 0.00 0.00 3.01
6914 7565 7.730332 AGTCCATTTGAAATCCCTAAAAAGACT 59.270 33.333 0.00 0.00 31.00 3.24
6915 7566 7.896811 AGTCCATTTGAAATCCCTAAAAAGAC 58.103 34.615 0.00 0.00 0.00 3.01
6916 7567 9.020731 GTAGTCCATTTGAAATCCCTAAAAAGA 57.979 33.333 0.00 0.00 0.00 2.52
6917 7568 8.251026 GGTAGTCCATTTGAAATCCCTAAAAAG 58.749 37.037 0.00 0.00 0.00 2.27
6918 7569 7.730784 TGGTAGTCCATTTGAAATCCCTAAAAA 59.269 33.333 0.00 0.00 39.03 1.94
6919 7570 7.177744 GTGGTAGTCCATTTGAAATCCCTAAAA 59.822 37.037 0.00 0.00 46.20 1.52
6920 7571 6.661805 GTGGTAGTCCATTTGAAATCCCTAAA 59.338 38.462 0.00 0.00 46.20 1.85
6921 7572 6.184789 GTGGTAGTCCATTTGAAATCCCTAA 58.815 40.000 0.00 0.00 46.20 2.69
6922 7573 5.251932 TGTGGTAGTCCATTTGAAATCCCTA 59.748 40.000 0.00 0.00 46.20 3.53
6923 7574 4.044065 TGTGGTAGTCCATTTGAAATCCCT 59.956 41.667 0.00 0.00 46.20 4.20
6924 7575 4.340617 TGTGGTAGTCCATTTGAAATCCC 58.659 43.478 0.00 0.00 46.20 3.85
6925 7576 6.238374 CGTATGTGGTAGTCCATTTGAAATCC 60.238 42.308 0.00 0.00 46.20 3.01
6926 7577 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
6927 7578 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
6928 7579 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
6929 7580 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
6930 7581 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
6931 7582 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
6932 7583 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
6933 7584 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
6934 7585 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
6935 7586 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
6936 7587 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.