Multiple sequence alignment - TraesCS4D01G285300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G285300 chr4D 100.000 3590 0 0 1 3590 456046004 456049593 0.000000e+00 6630
1 TraesCS4D01G285300 chr4B 89.981 2625 124 58 271 2838 570137747 570140289 0.000000e+00 3262
2 TraesCS4D01G285300 chr4B 83.790 438 36 25 3176 3589 570140860 570141286 2.020000e-102 383
3 TraesCS4D01G285300 chr4B 88.136 177 8 5 61 237 570137584 570137747 7.860000e-47 198
4 TraesCS4D01G285300 chr4B 79.227 207 12 13 3000 3176 570140288 570140493 8.140000e-22 115
5 TraesCS4D01G285300 chr4B 100.000 56 0 0 5 60 570131616 570131671 1.760000e-18 104
6 TraesCS4D01G285300 chr4B 78.736 174 22 8 503 673 570128950 570129111 6.340000e-18 102
7 TraesCS4D01G285300 chr4A 94.054 1850 79 15 1000 2836 11678426 11676595 0.000000e+00 2778
8 TraesCS4D01G285300 chr4A 79.887 885 58 44 4 864 11679315 11678527 4.080000e-149 538
9 TraesCS4D01G285300 chr4A 86.384 448 31 15 271 705 16831305 16831735 2.530000e-126 462
10 TraesCS4D01G285300 chr4A 79.212 457 69 23 1049 1496 715912636 715913075 9.750000e-76 294
11 TraesCS4D01G285300 chr4A 80.729 384 56 13 1111 1491 715641603 715641235 2.110000e-72 283
12 TraesCS4D01G285300 chr4A 91.758 182 13 2 2825 3005 362067900 362068080 5.950000e-63 252
13 TraesCS4D01G285300 chr4A 88.136 177 8 5 61 237 16831142 16831305 7.860000e-47 198
14 TraesCS4D01G285300 chr4A 77.239 268 28 16 3004 3238 11676591 11676324 3.760000e-25 126
15 TraesCS4D01G285300 chr4A 85.000 100 11 4 504 602 11681394 11681298 8.200000e-17 99
16 TraesCS4D01G285300 chr6D 83.469 369 59 2 1317 1684 97914623 97914256 3.430000e-90 342
17 TraesCS4D01G285300 chr6D 92.857 182 11 2 2837 3016 243032890 243033071 2.750000e-66 263
18 TraesCS4D01G285300 chr6B 83.514 370 57 4 1317 1684 182585980 182585613 3.430000e-90 342
19 TraesCS4D01G285300 chr6A 82.927 369 61 2 1317 1684 116913135 116912768 7.430000e-87 331
20 TraesCS4D01G285300 chr7A 81.633 392 52 15 1123 1499 692523287 692522901 1.250000e-79 307
21 TraesCS4D01G285300 chr7B 80.808 396 56 17 1123 1499 679930886 679930492 3.510000e-75 292
22 TraesCS4D01G285300 chr7B 95.181 166 8 0 2836 3001 595441893 595442058 2.750000e-66 263
23 TraesCS4D01G285300 chr7B 90.351 114 9 2 1124 1235 679986950 679987063 8.030000e-32 148
24 TraesCS4D01G285300 chr5D 97.576 165 4 0 2837 3001 464023142 464023306 2.110000e-72 283
25 TraesCS4D01G285300 chr1D 96.970 165 5 0 2837 3001 48888549 48888713 9.820000e-71 278
26 TraesCS4D01G285300 chr1D 96.407 167 6 0 2837 3003 112891439 112891605 3.530000e-70 276
27 TraesCS4D01G285300 chr7D 79.167 432 65 21 1075 1496 17762575 17762159 3.530000e-70 276
28 TraesCS4D01G285300 chr7D 94.286 175 8 2 2829 3002 86087414 86087587 2.120000e-67 267
29 TraesCS4D01G285300 chr7D 89.730 185 19 0 1315 1499 600703328 600703144 1.670000e-58 237
30 TraesCS4D01G285300 chr7D 91.228 114 8 2 1124 1235 600748578 600748691 1.730000e-33 154
31 TraesCS4D01G285300 chrUn 95.238 168 8 0 2836 3003 382102446 382102279 2.120000e-67 267
32 TraesCS4D01G285300 chr5A 94.706 170 9 0 2836 3005 458198877 458199046 7.640000e-67 265
33 TraesCS4D01G285300 chr3B 79.310 406 55 21 1114 1492 17988382 17988785 1.280000e-64 257
34 TraesCS4D01G285300 chr3B 87.647 170 21 0 1758 1927 17688523 17688354 7.860000e-47 198
35 TraesCS4D01G285300 chr3D 86.932 176 23 0 1317 1492 12300250 12300075 7.860000e-47 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G285300 chr4D 456046004 456049593 3589 False 6630.00 6630 100.0000 1 3590 1 chr4D.!!$F1 3589
1 TraesCS4D01G285300 chr4B 570137584 570141286 3702 False 989.50 3262 85.2835 61 3589 4 chr4B.!!$F2 3528
2 TraesCS4D01G285300 chr4A 11676324 11681394 5070 True 885.25 2778 84.0450 4 3238 4 chr4A.!!$R2 3234
3 TraesCS4D01G285300 chr4A 16831142 16831735 593 False 330.00 462 87.2600 61 705 2 chr4A.!!$F3 644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 2289 0.033011 ACTGATGACCGAGCTAGGGT 60.033 55.0 17.90 13.21 41.48 4.34 F
331 2424 0.035056 AGCTGGCAGGAACCATGTAC 60.035 55.0 17.64 0.00 39.54 2.90 F
864 2987 0.036577 AGCCACACAAGAGCAGCTAG 60.037 55.0 0.00 0.00 0.00 3.42 F
912 3035 0.040058 TAGCGACCTCCCACCTGTAA 59.960 55.0 0.00 0.00 0.00 2.41 F
1751 3911 0.605050 TGCTTACGTGAGGCATGCAA 60.605 50.0 21.36 0.80 31.01 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1751 3911 1.458777 TCGTTCCGGGCCTGGATAT 60.459 57.895 34.28 0.00 38.0 1.63 R
1848 4008 1.630369 CCATCCTTGTCCTTGGTCTCA 59.370 52.381 0.00 0.00 0.0 3.27 R
2391 4564 0.734253 CGAGCCTGTTGAGGTTCTCG 60.734 60.000 0.00 0.00 45.3 4.04 R
2557 4730 1.338579 GGTGACTCCCTTCTTCTGCAG 60.339 57.143 7.63 7.63 0.0 4.41 R
3281 5856 0.034896 GAAACGTGCTCTCCTCCCAA 59.965 55.000 0.00 0.00 0.0 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 2138 3.155501 ACCTGTAAACTGTAGCTCGTCT 58.844 45.455 0.00 0.00 0.00 4.18
101 2182 1.332375 ACGACGGTTTCCACACATTTG 59.668 47.619 0.00 0.00 0.00 2.32
189 2270 4.063967 CAGCCGTGTACCGAGCCA 62.064 66.667 5.46 0.00 39.56 4.75
202 2283 1.520342 GAGCCACTGATGACCGAGC 60.520 63.158 0.00 0.00 0.00 5.03
203 2284 1.954362 GAGCCACTGATGACCGAGCT 61.954 60.000 0.00 0.00 0.00 4.09
204 2285 0.684479 AGCCACTGATGACCGAGCTA 60.684 55.000 0.00 0.00 0.00 3.32
205 2286 0.249238 GCCACTGATGACCGAGCTAG 60.249 60.000 0.00 0.00 0.00 3.42
207 2288 0.387202 CACTGATGACCGAGCTAGGG 59.613 60.000 17.90 9.78 35.02 3.53
208 2289 0.033011 ACTGATGACCGAGCTAGGGT 60.033 55.000 17.90 13.21 41.48 4.34
209 2290 1.115467 CTGATGACCGAGCTAGGGTT 58.885 55.000 17.90 0.93 38.07 4.11
210 2291 0.824109 TGATGACCGAGCTAGGGTTG 59.176 55.000 17.90 0.00 38.07 3.77
211 2292 0.824759 GATGACCGAGCTAGGGTTGT 59.175 55.000 17.90 6.09 38.07 3.32
212 2293 0.537188 ATGACCGAGCTAGGGTTGTG 59.463 55.000 17.90 0.00 38.07 3.33
213 2294 0.830444 TGACCGAGCTAGGGTTGTGT 60.830 55.000 17.90 0.00 38.07 3.72
214 2295 0.320697 GACCGAGCTAGGGTTGTGTT 59.679 55.000 17.90 0.00 38.07 3.32
258 2339 1.392510 GTCGTATCCGGCTGAACAAAC 59.607 52.381 0.00 0.00 35.32 2.93
260 2341 1.717194 GTATCCGGCTGAACAAACGA 58.283 50.000 0.00 0.00 0.00 3.85
264 2345 1.438710 CGGCTGAACAAACGAAGCG 60.439 57.895 0.00 0.00 36.50 4.68
269 2350 2.538939 GCTGAACAAACGAAGCGAAAGT 60.539 45.455 0.00 0.00 0.00 2.66
322 2415 0.322816 GAATGGACAAGCTGGCAGGA 60.323 55.000 17.64 0.00 0.00 3.86
323 2416 0.112995 AATGGACAAGCTGGCAGGAA 59.887 50.000 17.64 0.00 0.00 3.36
325 2418 1.973812 GGACAAGCTGGCAGGAACC 60.974 63.158 17.64 0.00 0.00 3.62
327 2420 0.610232 GACAAGCTGGCAGGAACCAT 60.610 55.000 17.64 0.00 39.54 3.55
328 2421 0.896940 ACAAGCTGGCAGGAACCATG 60.897 55.000 17.64 5.13 39.54 3.66
329 2422 0.896940 CAAGCTGGCAGGAACCATGT 60.897 55.000 17.64 0.00 39.54 3.21
330 2423 0.698238 AAGCTGGCAGGAACCATGTA 59.302 50.000 17.64 0.00 39.54 2.29
331 2424 0.035056 AGCTGGCAGGAACCATGTAC 60.035 55.000 17.64 0.00 39.54 2.90
332 2425 0.322456 GCTGGCAGGAACCATGTACA 60.322 55.000 17.64 0.00 39.54 2.90
333 2426 1.453155 CTGGCAGGAACCATGTACAC 58.547 55.000 6.61 0.00 39.54 2.90
334 2427 0.321210 TGGCAGGAACCATGTACACG 60.321 55.000 0.00 0.00 33.75 4.49
335 2428 0.321298 GGCAGGAACCATGTACACGT 60.321 55.000 0.00 0.00 0.00 4.49
336 2429 1.519408 GCAGGAACCATGTACACGTT 58.481 50.000 9.36 9.36 0.00 3.99
355 2453 3.475774 GCCTACGTTGCGTGTCCG 61.476 66.667 0.00 0.00 41.39 4.79
356 2454 2.807895 CCTACGTTGCGTGTCCGG 60.808 66.667 0.00 0.00 41.39 5.14
357 2455 2.256158 CTACGTTGCGTGTCCGGA 59.744 61.111 0.00 0.00 41.39 5.14
402 2508 1.815421 AGCAAAGTGGCGGCTATCG 60.815 57.895 11.43 0.00 42.76 2.92
436 2542 6.036300 CGGCGTACAATAATTCTACTGGAAAA 59.964 38.462 0.00 0.00 37.49 2.29
488 2594 9.316859 GTAAAAATATTGTTTTGCACATTGCTC 57.683 29.630 0.00 0.00 45.31 4.26
533 2639 1.808133 GCGGTCATCCACTCAAGGATC 60.808 57.143 0.00 0.00 45.16 3.36
534 2640 1.536922 CGGTCATCCACTCAAGGATCG 60.537 57.143 0.00 0.00 45.16 3.69
535 2641 1.202580 GGTCATCCACTCAAGGATCGG 60.203 57.143 0.00 0.00 45.16 4.18
536 2642 1.757118 GTCATCCACTCAAGGATCGGA 59.243 52.381 0.00 0.00 45.16 4.55
541 2647 0.103937 CACTCAAGGATCGGAGAGGC 59.896 60.000 12.82 0.00 43.63 4.70
589 2700 3.402681 CAGGTCCGTCATGCCCCT 61.403 66.667 0.00 0.00 0.00 4.79
590 2701 3.083997 AGGTCCGTCATGCCCCTC 61.084 66.667 0.00 0.00 0.00 4.30
613 2735 2.095853 CGTCCCGTGTAGTATTACGTGT 59.904 50.000 0.00 0.00 38.56 4.49
696 2818 1.071857 GTTTCCTCCCTCGGAACAGTT 59.928 52.381 0.00 0.00 42.50 3.16
743 2866 3.704231 CTGCCCCATGGAACTCCCG 62.704 68.421 15.22 0.00 37.93 5.14
745 2868 3.015145 CCCCATGGAACTCCCGGT 61.015 66.667 15.22 0.00 37.93 5.28
747 2870 2.590092 CCATGGAACTCCCGGTCC 59.410 66.667 5.56 0.27 37.93 4.46
750 2873 1.916777 ATGGAACTCCCGGTCCGTT 60.917 57.895 11.06 0.00 37.93 4.44
752 2875 2.263852 GAACTCCCGGTCCGTTCC 59.736 66.667 11.06 0.00 32.88 3.62
753 2876 2.524887 AACTCCCGGTCCGTTCCA 60.525 61.111 11.06 0.00 0.00 3.53
755 2878 2.180159 AACTCCCGGTCCGTTCCATG 62.180 60.000 11.06 0.00 0.00 3.66
756 2879 2.284039 TCCCGGTCCGTTCCATGA 60.284 61.111 11.06 0.00 0.00 3.07
757 2880 1.686325 CTCCCGGTCCGTTCCATGAT 61.686 60.000 11.06 0.00 0.00 2.45
758 2881 1.227556 CCCGGTCCGTTCCATGATC 60.228 63.158 11.06 0.00 0.00 2.92
759 2882 1.591594 CCGGTCCGTTCCATGATCG 60.592 63.158 11.06 0.00 34.94 3.69
839 2962 1.691127 CGCAACACAACACAACACAA 58.309 45.000 0.00 0.00 0.00 3.33
840 2963 1.385075 CGCAACACAACACAACACAAC 59.615 47.619 0.00 0.00 0.00 3.32
841 2964 2.398498 GCAACACAACACAACACAACA 58.602 42.857 0.00 0.00 0.00 3.33
842 2965 2.154772 GCAACACAACACAACACAACAC 59.845 45.455 0.00 0.00 0.00 3.32
843 2966 3.375642 CAACACAACACAACACAACACA 58.624 40.909 0.00 0.00 0.00 3.72
852 2975 1.094785 AACACAACACAGAGCCACAC 58.905 50.000 0.00 0.00 0.00 3.82
864 2987 0.036577 AGCCACACAAGAGCAGCTAG 60.037 55.000 0.00 0.00 0.00 3.42
865 2988 1.642952 GCCACACAAGAGCAGCTAGC 61.643 60.000 6.62 6.62 46.19 3.42
877 3000 0.805322 CAGCTAGCAGCAAGAGACGG 60.805 60.000 18.83 0.00 45.56 4.79
908 3031 2.363925 GGTAGCGACCTCCCACCT 60.364 66.667 9.01 0.00 43.16 4.00
909 3032 2.722201 GGTAGCGACCTCCCACCTG 61.722 68.421 9.01 0.00 43.16 4.00
910 3033 1.982938 GTAGCGACCTCCCACCTGT 60.983 63.158 0.00 0.00 0.00 4.00
912 3035 0.040058 TAGCGACCTCCCACCTGTAA 59.960 55.000 0.00 0.00 0.00 2.41
915 3038 0.682852 CGACCTCCCACCTGTAAACA 59.317 55.000 0.00 0.00 0.00 2.83
916 3039 1.337823 CGACCTCCCACCTGTAAACAG 60.338 57.143 3.02 3.02 43.40 3.16
926 3049 1.878953 CTGTAAACAGGTTCGTGCCT 58.121 50.000 2.01 0.00 40.20 4.75
927 3050 2.218603 CTGTAAACAGGTTCGTGCCTT 58.781 47.619 2.01 0.00 40.20 4.35
937 3060 3.135994 GGTTCGTGCCTTCTGTAAAGAA 58.864 45.455 0.00 0.00 0.00 2.52
951 3074 9.237846 CTTCTGTAAAGAAAATCTTTGGTTCAC 57.762 33.333 14.03 5.89 45.45 3.18
972 3095 3.006756 GCTCTCCTGGCTGCACGTA 62.007 63.158 0.50 0.00 0.00 3.57
980 3113 1.227002 GGCTGCACGTACCTAGCTC 60.227 63.158 0.50 0.00 36.45 4.09
1374 3527 4.867599 GACGTGATCGCCGGGACC 62.868 72.222 2.18 0.00 41.18 4.46
1708 3863 6.936335 TGCATCATGATATTTCCTACGTGAAT 59.064 34.615 8.15 0.00 33.15 2.57
1712 3867 5.651172 TGATATTTCCTACGTGAATTGCG 57.349 39.130 0.00 0.00 0.00 4.85
1751 3911 0.605050 TGCTTACGTGAGGCATGCAA 60.605 50.000 21.36 0.80 31.01 4.08
1752 3912 0.734889 GCTTACGTGAGGCATGCAAT 59.265 50.000 21.36 7.26 0.00 3.56
1753 3913 1.939934 GCTTACGTGAGGCATGCAATA 59.060 47.619 21.36 0.97 0.00 1.90
1848 4008 3.966543 CTCCCCGGCCACCACTTT 61.967 66.667 2.24 0.00 0.00 2.66
1986 4154 8.526147 CACTCCAAAGAATACAATGGAATTTCT 58.474 33.333 0.00 0.00 41.20 2.52
1997 4165 5.354234 ACAATGGAATTTCTATGACGTCCAC 59.646 40.000 14.12 0.00 37.95 4.02
1998 4166 3.517602 TGGAATTTCTATGACGTCCACG 58.482 45.455 14.12 0.00 46.33 4.94
2227 4400 0.824109 CCTCGGATGGCTCTACAACA 59.176 55.000 0.00 0.00 0.00 3.33
2229 4402 2.544685 CTCGGATGGCTCTACAACAAG 58.455 52.381 0.00 0.00 0.00 3.16
2367 4540 2.343758 GAGCTCAAGGGCGACACA 59.656 61.111 9.40 0.00 37.29 3.72
2370 4543 1.078848 GCTCAAGGGCGACACATCT 60.079 57.895 0.00 0.00 0.00 2.90
2460 4633 2.881266 CGTGTGCAGGGTGAACGTG 61.881 63.158 0.00 0.00 37.99 4.49
2502 4675 4.458397 CTGATGACAATAGAGGCACCAAT 58.542 43.478 0.00 0.00 0.00 3.16
2523 4696 5.707066 ATGAGGAGGAGCTAATCAGTTTT 57.293 39.130 0.00 0.00 0.00 2.43
2600 4773 4.938832 CGTCCCACAGTAAATAACATTGGA 59.061 41.667 0.00 0.00 35.29 3.53
2602 4775 6.764085 CGTCCCACAGTAAATAACATTGGATA 59.236 38.462 0.00 0.00 35.29 2.59
2664 4841 7.010367 CGTATTACGTGTAAGGCAAATTAGGAA 59.990 37.037 8.06 0.00 36.74 3.36
2696 4873 0.462047 GGTCGAACCATGGTAGGCTG 60.462 60.000 20.12 6.61 38.42 4.85
2731 4908 3.008375 TGCCAAAGCTCAGAGACTTATGT 59.992 43.478 0.00 0.00 40.80 2.29
2732 4909 3.373439 GCCAAAGCTCAGAGACTTATGTG 59.627 47.826 0.00 0.64 35.50 3.21
2734 4911 5.240891 CCAAAGCTCAGAGACTTATGTGAA 58.759 41.667 0.00 0.00 0.00 3.18
2747 4924 7.339482 AGACTTATGTGAATTTTAGAGGTCCC 58.661 38.462 0.00 0.00 0.00 4.46
2752 4929 5.076873 TGTGAATTTTAGAGGTCCCCAAAG 58.923 41.667 0.00 0.00 0.00 2.77
2839 5017 8.917414 TTTATCAGCCTATATTGGATCCTACT 57.083 34.615 14.23 0.00 0.00 2.57
2840 5018 8.917414 TTATCAGCCTATATTGGATCCTACTT 57.083 34.615 14.23 0.00 0.00 2.24
2841 5019 6.859112 TCAGCCTATATTGGATCCTACTTC 57.141 41.667 14.23 0.00 0.00 3.01
2842 5020 5.721960 TCAGCCTATATTGGATCCTACTTCC 59.278 44.000 14.23 0.00 0.00 3.46
2843 5021 5.723887 CAGCCTATATTGGATCCTACTTCCT 59.276 44.000 14.23 0.00 34.17 3.36
2844 5022 5.961421 AGCCTATATTGGATCCTACTTCCTC 59.039 44.000 14.23 0.00 34.17 3.71
2845 5023 5.129650 GCCTATATTGGATCCTACTTCCTCC 59.870 48.000 14.23 0.00 34.17 4.30
2846 5024 5.361285 CCTATATTGGATCCTACTTCCTCCG 59.639 48.000 14.23 0.00 34.17 4.63
2847 5025 2.544844 TTGGATCCTACTTCCTCCGT 57.455 50.000 14.23 0.00 34.17 4.69
2848 5026 2.544844 TGGATCCTACTTCCTCCGTT 57.455 50.000 14.23 0.00 34.17 4.44
2849 5027 2.829023 TGGATCCTACTTCCTCCGTTT 58.171 47.619 14.23 0.00 34.17 3.60
2850 5028 2.764572 TGGATCCTACTTCCTCCGTTTC 59.235 50.000 14.23 0.00 34.17 2.78
2851 5029 3.032459 GGATCCTACTTCCTCCGTTTCT 58.968 50.000 3.84 0.00 0.00 2.52
2852 5030 4.213513 GGATCCTACTTCCTCCGTTTCTA 58.786 47.826 3.84 0.00 0.00 2.10
2853 5031 4.648307 GGATCCTACTTCCTCCGTTTCTAA 59.352 45.833 3.84 0.00 0.00 2.10
2854 5032 5.128335 GGATCCTACTTCCTCCGTTTCTAAA 59.872 44.000 3.84 0.00 0.00 1.85
2855 5033 6.183360 GGATCCTACTTCCTCCGTTTCTAAAT 60.183 42.308 3.84 0.00 0.00 1.40
2856 5034 7.015001 GGATCCTACTTCCTCCGTTTCTAAATA 59.985 40.741 3.84 0.00 0.00 1.40
2857 5035 7.909485 TCCTACTTCCTCCGTTTCTAAATAT 57.091 36.000 0.00 0.00 0.00 1.28
2858 5036 9.597681 ATCCTACTTCCTCCGTTTCTAAATATA 57.402 33.333 0.00 0.00 0.00 0.86
2859 5037 9.075678 TCCTACTTCCTCCGTTTCTAAATATAG 57.924 37.037 0.00 0.00 0.00 1.31
2860 5038 8.305317 CCTACTTCCTCCGTTTCTAAATATAGG 58.695 40.741 0.00 0.00 0.00 2.57
2861 5039 7.672122 ACTTCCTCCGTTTCTAAATATAGGT 57.328 36.000 0.00 0.00 0.00 3.08
2862 5040 7.724287 ACTTCCTCCGTTTCTAAATATAGGTC 58.276 38.462 0.00 0.00 0.00 3.85
2863 5041 7.564292 ACTTCCTCCGTTTCTAAATATAGGTCT 59.436 37.037 0.00 0.00 0.00 3.85
2864 5042 7.909485 TCCTCCGTTTCTAAATATAGGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
2865 5043 8.315220 TCCTCCGTTTCTAAATATAGGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
2866 5044 8.419442 TCCTCCGTTTCTAAATATAGGTCTTTC 58.581 37.037 0.00 0.00 0.00 2.62
2867 5045 8.422566 CCTCCGTTTCTAAATATAGGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
2882 5060 9.883142 ATAGGTCTTTCTAGAGATTTCAACAAG 57.117 33.333 0.00 0.00 0.00 3.16
2883 5061 7.740805 AGGTCTTTCTAGAGATTTCAACAAGT 58.259 34.615 0.00 0.00 0.00 3.16
2884 5062 7.659390 AGGTCTTTCTAGAGATTTCAACAAGTG 59.341 37.037 0.00 0.00 0.00 3.16
2885 5063 7.657761 GGTCTTTCTAGAGATTTCAACAAGTGA 59.342 37.037 0.00 0.00 0.00 3.41
2886 5064 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2887 5065 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2888 5066 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2894 5072 9.737427 AGAGATTTCAACAAGTGACTATATACG 57.263 33.333 0.00 0.00 35.39 3.06
2895 5073 8.873215 AGATTTCAACAAGTGACTATATACGG 57.127 34.615 0.00 0.00 35.39 4.02
2896 5074 8.692710 AGATTTCAACAAGTGACTATATACGGA 58.307 33.333 0.00 0.00 35.39 4.69
2897 5075 8.873215 ATTTCAACAAGTGACTATATACGGAG 57.127 34.615 0.00 0.00 35.39 4.63
2898 5076 5.828747 TCAACAAGTGACTATATACGGAGC 58.171 41.667 0.00 0.00 0.00 4.70
2899 5077 5.358725 TCAACAAGTGACTATATACGGAGCA 59.641 40.000 0.00 0.00 0.00 4.26
2900 5078 5.847111 ACAAGTGACTATATACGGAGCAA 57.153 39.130 0.00 0.00 0.00 3.91
2901 5079 6.216801 ACAAGTGACTATATACGGAGCAAA 57.783 37.500 0.00 0.00 0.00 3.68
2902 5080 6.636705 ACAAGTGACTATATACGGAGCAAAA 58.363 36.000 0.00 0.00 0.00 2.44
2903 5081 7.272978 ACAAGTGACTATATACGGAGCAAAAT 58.727 34.615 0.00 0.00 0.00 1.82
2904 5082 7.224753 ACAAGTGACTATATACGGAGCAAAATG 59.775 37.037 0.00 0.00 0.00 2.32
2905 5083 7.050970 AGTGACTATATACGGAGCAAAATGA 57.949 36.000 0.00 0.00 0.00 2.57
2906 5084 7.148641 AGTGACTATATACGGAGCAAAATGAG 58.851 38.462 0.00 0.00 0.00 2.90
2907 5085 6.924060 GTGACTATATACGGAGCAAAATGAGT 59.076 38.462 0.00 0.00 0.00 3.41
2908 5086 6.923508 TGACTATATACGGAGCAAAATGAGTG 59.076 38.462 0.00 0.00 0.00 3.51
2909 5087 7.050970 ACTATATACGGAGCAAAATGAGTGA 57.949 36.000 0.00 0.00 0.00 3.41
2910 5088 7.497595 ACTATATACGGAGCAAAATGAGTGAA 58.502 34.615 0.00 0.00 0.00 3.18
2911 5089 8.150945 ACTATATACGGAGCAAAATGAGTGAAT 58.849 33.333 0.00 0.00 0.00 2.57
2912 5090 5.741388 ATACGGAGCAAAATGAGTGAATC 57.259 39.130 0.00 0.00 0.00 2.52
2913 5091 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2914 5092 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2915 5093 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
2916 5094 5.882557 ACGGAGCAAAATGAGTGAATCTATT 59.117 36.000 0.00 0.00 0.00 1.73
2917 5095 6.375455 ACGGAGCAAAATGAGTGAATCTATTT 59.625 34.615 0.00 0.00 0.00 1.40
2918 5096 7.094205 ACGGAGCAAAATGAGTGAATCTATTTT 60.094 33.333 0.00 0.00 33.08 1.82
2919 5097 7.430502 CGGAGCAAAATGAGTGAATCTATTTTC 59.569 37.037 0.00 0.00 31.77 2.29
2920 5098 8.465201 GGAGCAAAATGAGTGAATCTATTTTCT 58.535 33.333 0.00 0.00 31.77 2.52
2950 5128 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
2952 5130 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
2953 5131 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
2954 5132 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
2955 5133 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
2956 5134 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
2957 5135 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
2958 5136 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
2959 5137 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
2960 5138 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
2961 5139 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
2962 5140 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
2963 5141 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
2964 5142 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
2965 5143 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
2966 5144 6.238374 CGTATGTGGTAGTCCATTTGAAATCC 60.238 42.308 0.00 0.00 46.20 3.01
2967 5145 4.340617 TGTGGTAGTCCATTTGAAATCCC 58.659 43.478 0.00 0.00 46.20 3.85
2968 5146 4.044065 TGTGGTAGTCCATTTGAAATCCCT 59.956 41.667 0.00 0.00 46.20 4.20
2969 5147 5.251932 TGTGGTAGTCCATTTGAAATCCCTA 59.748 40.000 0.00 0.00 46.20 3.53
2970 5148 6.184789 GTGGTAGTCCATTTGAAATCCCTAA 58.815 40.000 0.00 0.00 46.20 2.69
2971 5149 6.661805 GTGGTAGTCCATTTGAAATCCCTAAA 59.338 38.462 0.00 0.00 46.20 1.85
2972 5150 7.177744 GTGGTAGTCCATTTGAAATCCCTAAAA 59.822 37.037 0.00 0.00 46.20 1.52
2973 5151 7.730784 TGGTAGTCCATTTGAAATCCCTAAAAA 59.269 33.333 0.00 0.00 39.03 1.94
2974 5152 8.251026 GGTAGTCCATTTGAAATCCCTAAAAAG 58.749 37.037 0.00 0.00 0.00 2.27
2975 5153 9.020731 GTAGTCCATTTGAAATCCCTAAAAAGA 57.979 33.333 0.00 0.00 0.00 2.52
2976 5154 7.896811 AGTCCATTTGAAATCCCTAAAAAGAC 58.103 34.615 0.00 0.00 0.00 3.01
2977 5155 7.730332 AGTCCATTTGAAATCCCTAAAAAGACT 59.270 33.333 0.00 0.00 31.00 3.24
2978 5156 8.367911 GTCCATTTGAAATCCCTAAAAAGACTT 58.632 33.333 0.00 0.00 0.00 3.01
2979 5157 9.594936 TCCATTTGAAATCCCTAAAAAGACTTA 57.405 29.630 0.00 0.00 0.00 2.24
2995 5173 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2996 5174 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2997 5175 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2998 5176 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2999 5177 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3000 5178 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3001 5179 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
3002 5180 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
3063 5241 0.955919 CTGAAACCCAGCCGTTCCTC 60.956 60.000 0.00 0.00 35.89 3.71
3097 5294 3.669557 GCGACGATACTGCAAAATTTGGT 60.670 43.478 7.89 0.67 0.00 3.67
3102 5299 7.151999 ACGATACTGCAAAATTTGGTATTCA 57.848 32.000 7.89 0.00 0.00 2.57
3142 5341 1.263752 TGTGTGTGACGAACATGCATG 59.736 47.619 25.09 25.09 41.97 4.06
3143 5342 1.264020 GTGTGTGACGAACATGCATGT 59.736 47.619 26.61 26.61 41.97 3.21
3144 5343 2.478514 GTGTGTGACGAACATGCATGTA 59.521 45.455 31.55 13.87 41.97 2.29
3145 5344 2.478514 TGTGTGACGAACATGCATGTAC 59.521 45.455 31.55 24.27 41.97 2.90
3162 5370 6.837048 TGCATGTACTGTAGGAGTAATCCTTA 59.163 38.462 18.34 6.38 38.96 2.69
3199 5774 9.944376 ACTATGTCAGTTGTATCAAAATGTACT 57.056 29.630 0.00 0.00 31.59 2.73
3238 5813 2.687566 GGGAGATGGGGTGGACGT 60.688 66.667 0.00 0.00 0.00 4.34
3240 5815 2.125106 GAGATGGGGTGGACGTGC 60.125 66.667 0.00 0.00 0.00 5.34
3244 5819 3.680620 ATGGGGTGGACGTGCATCG 62.681 63.158 14.45 7.07 46.00 3.84
3263 5838 2.584391 GGACGCACTGAGGAAGGGT 61.584 63.158 0.00 0.00 0.00 4.34
3264 5839 1.255667 GGACGCACTGAGGAAGGGTA 61.256 60.000 0.00 0.00 0.00 3.69
3269 5844 0.108138 CACTGAGGAAGGGTAAGGCG 60.108 60.000 0.00 0.00 0.00 5.52
3275 5850 1.446366 GAAGGGTAAGGCGGCTAGG 59.554 63.158 13.71 0.00 0.00 3.02
3281 5856 0.468648 GTAAGGCGGCTAGGGTTCAT 59.531 55.000 13.71 0.00 0.00 2.57
3295 5870 1.680249 GGTTCATTGGGAGGAGAGCAC 60.680 57.143 0.00 0.00 0.00 4.40
3302 5877 0.321996 GGGAGGAGAGCACGTTTCTT 59.678 55.000 1.21 0.00 0.00 2.52
3304 5879 0.793250 GAGGAGAGCACGTTTCTTGC 59.207 55.000 1.21 0.00 40.52 4.01
3319 5894 5.109210 GTTTCTTGCTTTATATGTTGGGCC 58.891 41.667 0.00 0.00 0.00 5.80
3320 5895 3.974719 TCTTGCTTTATATGTTGGGCCA 58.025 40.909 0.00 0.00 0.00 5.36
3339 5914 0.324943 ATGTCAGCGCAGGGTAAACT 59.675 50.000 11.47 0.00 0.00 2.66
3353 5928 5.001874 AGGGTAAACTGAGAAAAATCGGTC 58.998 41.667 0.00 0.00 37.84 4.79
3357 5932 7.120138 GGGTAAACTGAGAAAAATCGGTCATAA 59.880 37.037 0.00 0.00 37.84 1.90
3358 5933 8.674607 GGTAAACTGAGAAAAATCGGTCATAAT 58.325 33.333 0.00 0.00 37.84 1.28
3363 5938 8.674607 ACTGAGAAAAATCGGTCATAATAAACC 58.325 33.333 0.00 0.00 33.39 3.27
3391 5966 3.412879 GAGAGGGGAGCACGTACGC 62.413 68.421 16.72 0.00 0.00 4.42
3410 6022 1.257743 CTGGGAGGACAGACGAAGAA 58.742 55.000 0.00 0.00 40.97 2.52
3411 6023 1.618837 CTGGGAGGACAGACGAAGAAA 59.381 52.381 0.00 0.00 40.97 2.52
3412 6024 1.618837 TGGGAGGACAGACGAAGAAAG 59.381 52.381 0.00 0.00 0.00 2.62
3413 6025 1.673329 GGGAGGACAGACGAAGAAAGC 60.673 57.143 0.00 0.00 0.00 3.51
3414 6026 1.673329 GGAGGACAGACGAAGAAAGCC 60.673 57.143 0.00 0.00 0.00 4.35
3415 6027 0.038159 AGGACAGACGAAGAAAGCCG 60.038 55.000 0.00 0.00 0.00 5.52
3416 6028 1.014564 GGACAGACGAAGAAAGCCGG 61.015 60.000 0.00 0.00 0.00 6.13
3417 6029 0.038526 GACAGACGAAGAAAGCCGGA 60.039 55.000 5.05 0.00 0.00 5.14
3418 6030 0.391597 ACAGACGAAGAAAGCCGGAA 59.608 50.000 5.05 0.00 0.00 4.30
3419 6031 1.002087 ACAGACGAAGAAAGCCGGAAT 59.998 47.619 5.05 0.00 0.00 3.01
3420 6032 2.232941 ACAGACGAAGAAAGCCGGAATA 59.767 45.455 5.05 0.00 0.00 1.75
3421 6033 3.259064 CAGACGAAGAAAGCCGGAATAA 58.741 45.455 5.05 0.00 0.00 1.40
3422 6034 3.682858 CAGACGAAGAAAGCCGGAATAAA 59.317 43.478 5.05 0.00 0.00 1.40
3423 6035 4.153475 CAGACGAAGAAAGCCGGAATAAAA 59.847 41.667 5.05 0.00 0.00 1.52
3424 6036 4.758165 AGACGAAGAAAGCCGGAATAAAAA 59.242 37.500 5.05 0.00 0.00 1.94
3425 6037 5.414765 AGACGAAGAAAGCCGGAATAAAAAT 59.585 36.000 5.05 0.00 0.00 1.82
3426 6038 5.399013 ACGAAGAAAGCCGGAATAAAAATG 58.601 37.500 5.05 0.00 0.00 2.32
3427 6039 4.798387 CGAAGAAAGCCGGAATAAAAATGG 59.202 41.667 5.05 0.00 0.00 3.16
3428 6040 5.392595 CGAAGAAAGCCGGAATAAAAATGGA 60.393 40.000 5.05 0.00 0.00 3.41
3429 6041 5.582689 AGAAAGCCGGAATAAAAATGGAG 57.417 39.130 5.05 0.00 0.00 3.86
3447 6059 2.162408 GGAGACAGGCGGAAGAAAATTG 59.838 50.000 0.00 0.00 0.00 2.32
3453 6065 2.554032 AGGCGGAAGAAAATTGACACAG 59.446 45.455 0.00 0.00 0.00 3.66
3532 6145 9.463443 CAACGAGGAAATTTCTTCTACAAAAAT 57.537 29.630 23.18 3.21 31.77 1.82
3533 6146 9.463443 AACGAGGAAATTTCTTCTACAAAAATG 57.537 29.630 23.18 10.32 31.77 2.32
3589 6202 5.882557 GTCTTGTCATGAATATGAACCAGGT 59.117 40.000 0.00 0.00 44.49 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.814336 CTGCAACCACTTAGGAGAAACC 59.186 50.000 0.00 0.00 41.22 3.27
6 7 3.740115 TCTGCAACCACTTAGGAGAAAC 58.260 45.455 0.00 0.00 41.22 2.78
7 8 4.640771 ATCTGCAACCACTTAGGAGAAA 57.359 40.909 0.00 0.00 41.22 2.52
8 9 5.755409 TTATCTGCAACCACTTAGGAGAA 57.245 39.130 0.00 0.00 41.22 2.87
10 11 6.206634 TGTTTTTATCTGCAACCACTTAGGAG 59.793 38.462 0.00 0.00 41.22 3.69
11 12 6.065374 TGTTTTTATCTGCAACCACTTAGGA 58.935 36.000 0.00 0.00 41.22 2.94
12 13 6.325919 TGTTTTTATCTGCAACCACTTAGG 57.674 37.500 0.00 0.00 45.67 2.69
57 2138 2.224209 GGAGTTCCTTTCACAGAACGGA 60.224 50.000 1.32 1.32 45.60 4.69
101 2182 0.179153 GCTGAGAATTTTCTGCCCGC 60.179 55.000 14.62 0.00 37.73 6.13
158 2239 1.082117 CGGCTGTGGATGGAACGTAC 61.082 60.000 0.00 0.00 0.00 3.67
159 2240 1.216977 CGGCTGTGGATGGAACGTA 59.783 57.895 0.00 0.00 0.00 3.57
160 2241 2.047274 CGGCTGTGGATGGAACGT 60.047 61.111 0.00 0.00 0.00 3.99
161 2242 2.047274 ACGGCTGTGGATGGAACG 60.047 61.111 0.00 0.00 0.00 3.95
189 2270 0.033011 ACCCTAGCTCGGTCATCAGT 60.033 55.000 3.23 0.00 0.00 3.41
202 2283 2.631160 TGGTCACAACACAACCCTAG 57.369 50.000 0.00 0.00 31.78 3.02
203 2284 2.506231 TCTTGGTCACAACACAACCCTA 59.494 45.455 0.00 0.00 32.14 3.53
204 2285 1.283613 TCTTGGTCACAACACAACCCT 59.716 47.619 0.00 0.00 32.14 4.34
205 2286 1.404035 GTCTTGGTCACAACACAACCC 59.596 52.381 0.00 0.00 32.14 4.11
207 2288 2.088423 TGGTCTTGGTCACAACACAAC 58.912 47.619 0.00 0.00 32.14 3.32
208 2289 2.498644 TGGTCTTGGTCACAACACAA 57.501 45.000 0.00 0.00 32.14 3.33
209 2290 2.498644 TTGGTCTTGGTCACAACACA 57.501 45.000 0.00 0.00 32.14 3.72
210 2291 2.687935 ACATTGGTCTTGGTCACAACAC 59.312 45.455 0.00 0.00 32.14 3.32
211 2292 3.011566 ACATTGGTCTTGGTCACAACA 57.988 42.857 0.00 0.00 32.14 3.33
212 2293 4.082787 CCATACATTGGTCTTGGTCACAAC 60.083 45.833 0.00 0.00 40.99 3.32
213 2294 4.078537 CCATACATTGGTCTTGGTCACAA 58.921 43.478 0.00 0.00 40.99 3.33
214 2295 3.684908 CCATACATTGGTCTTGGTCACA 58.315 45.455 0.00 0.00 40.99 3.58
258 2339 1.131420 GCTGCTGACTTTCGCTTCG 59.869 57.895 0.00 0.00 0.00 3.79
260 2341 0.590195 CTTGCTGCTGACTTTCGCTT 59.410 50.000 0.00 0.00 0.00 4.68
264 2345 0.039708 GCCACTTGCTGCTGACTTTC 60.040 55.000 0.00 0.00 36.87 2.62
269 2350 2.036571 CGATGCCACTTGCTGCTGA 61.037 57.895 0.00 0.00 42.00 4.26
290 2375 0.830648 TCCATTCCAGTGACCGATCC 59.169 55.000 0.00 0.00 0.00 3.36
296 2381 1.808945 CAGCTTGTCCATTCCAGTGAC 59.191 52.381 0.00 0.00 0.00 3.67
322 2415 0.034337 AGGCGAACGTGTACATGGTT 59.966 50.000 19.05 15.88 0.00 3.67
323 2416 0.889994 TAGGCGAACGTGTACATGGT 59.110 50.000 19.05 13.10 0.00 3.55
325 2418 0.911856 CGTAGGCGAACGTGTACATG 59.088 55.000 13.64 13.64 41.33 3.21
327 2420 4.845177 CGTAGGCGAACGTGTACA 57.155 55.556 7.19 0.00 41.33 2.90
351 2449 2.719426 TTCTTCTTCTTCGTCCGGAC 57.281 50.000 25.28 25.28 0.00 4.79
352 2450 2.609737 GCTTTCTTCTTCTTCGTCCGGA 60.610 50.000 0.00 0.00 0.00 5.14
353 2451 1.727335 GCTTTCTTCTTCTTCGTCCGG 59.273 52.381 0.00 0.00 0.00 5.14
355 2453 2.664085 CTCGCTTTCTTCTTCTTCGTCC 59.336 50.000 0.00 0.00 0.00 4.79
356 2454 3.566523 TCTCGCTTTCTTCTTCTTCGTC 58.433 45.455 0.00 0.00 0.00 4.20
357 2455 3.570559 CTCTCGCTTTCTTCTTCTTCGT 58.429 45.455 0.00 0.00 0.00 3.85
402 2508 1.903783 ATTGTACGCCGTGAAACCGC 61.904 55.000 0.00 0.00 37.72 5.68
404 2510 4.093850 AGAATTATTGTACGCCGTGAAACC 59.906 41.667 0.00 0.00 0.00 3.27
442 2548 1.974236 CTCTGTCAGGTCAGGGTTTCT 59.026 52.381 0.00 0.00 36.25 2.52
444 2550 1.807814 ACTCTGTCAGGTCAGGGTTT 58.192 50.000 0.00 0.00 45.54 3.27
502 2608 0.171007 GATGACCGCACCAAACATGG 59.829 55.000 0.00 0.00 0.00 3.66
532 2638 0.392998 GCCATTTCTTGCCTCTCCGA 60.393 55.000 0.00 0.00 0.00 4.55
533 2639 1.709147 CGCCATTTCTTGCCTCTCCG 61.709 60.000 0.00 0.00 0.00 4.63
534 2640 1.997928 GCGCCATTTCTTGCCTCTCC 61.998 60.000 0.00 0.00 0.00 3.71
535 2641 1.431036 GCGCCATTTCTTGCCTCTC 59.569 57.895 0.00 0.00 0.00 3.20
536 2642 2.401766 CGCGCCATTTCTTGCCTCT 61.402 57.895 0.00 0.00 0.00 3.69
541 2647 4.101790 ACCGCGCGCCATTTCTTG 62.102 61.111 27.36 10.07 0.00 3.02
593 2704 3.429085 CACACGTAATACTACACGGGAC 58.571 50.000 3.07 0.00 44.24 4.46
598 2720 2.595536 CGCACCACACGTAATACTACAC 59.404 50.000 0.00 0.00 0.00 2.90
743 2866 1.287425 GTTCGATCATGGAACGGACC 58.713 55.000 0.00 0.00 31.58 4.46
745 2868 0.179121 CGGTTCGATCATGGAACGGA 60.179 55.000 12.95 0.91 43.38 4.69
747 2870 1.762222 GCCGGTTCGATCATGGAACG 61.762 60.000 1.90 2.78 43.61 3.95
750 2873 2.504032 GGCCGGTTCGATCATGGA 59.496 61.111 1.90 0.00 0.00 3.41
752 2875 2.967076 CCGGCCGGTTCGATCATG 60.967 66.667 36.64 6.12 0.00 3.07
753 2876 4.910585 GCCGGCCGGTTCGATCAT 62.911 66.667 42.53 0.00 37.65 2.45
839 2962 0.533755 GCTCTTGTGTGGCTCTGTGT 60.534 55.000 0.00 0.00 0.00 3.72
840 2963 0.533531 TGCTCTTGTGTGGCTCTGTG 60.534 55.000 0.00 0.00 0.00 3.66
841 2964 0.250209 CTGCTCTTGTGTGGCTCTGT 60.250 55.000 0.00 0.00 0.00 3.41
842 2965 1.575576 GCTGCTCTTGTGTGGCTCTG 61.576 60.000 0.00 0.00 0.00 3.35
843 2966 1.302351 GCTGCTCTTGTGTGGCTCT 60.302 57.895 0.00 0.00 0.00 4.09
852 2975 0.727970 CTTGCTGCTAGCTGCTCTTG 59.272 55.000 36.36 23.15 42.97 3.02
866 2989 4.749310 CTGCGCCCGTCTCTTGCT 62.749 66.667 4.18 0.00 0.00 3.91
877 3000 1.224722 GCTACCTTATCTGCTGCGCC 61.225 60.000 4.18 0.00 0.00 6.53
881 3004 2.141535 GGTCGCTACCTTATCTGCTG 57.858 55.000 0.00 0.00 43.08 4.41
893 3016 0.040058 TTACAGGTGGGAGGTCGCTA 59.960 55.000 0.00 0.00 0.00 4.26
907 3030 1.878953 AGGCACGAACCTGTTTACAG 58.121 50.000 2.86 2.86 39.13 2.74
908 3031 2.158871 AGAAGGCACGAACCTGTTTACA 60.159 45.455 1.75 0.00 39.93 2.41
909 3032 2.223377 CAGAAGGCACGAACCTGTTTAC 59.777 50.000 1.75 0.00 39.93 2.01
910 3033 2.158871 ACAGAAGGCACGAACCTGTTTA 60.159 45.455 1.75 0.00 39.93 2.01
912 3035 0.180406 ACAGAAGGCACGAACCTGTT 59.820 50.000 1.75 0.00 39.93 3.16
915 3038 2.367567 TCTTTACAGAAGGCACGAACCT 59.632 45.455 0.00 0.00 43.91 3.50
916 3039 2.762745 TCTTTACAGAAGGCACGAACC 58.237 47.619 0.00 0.00 0.00 3.62
917 3040 4.806342 TTTCTTTACAGAAGGCACGAAC 57.194 40.909 0.00 0.00 40.28 3.95
918 3041 5.763204 AGATTTTCTTTACAGAAGGCACGAA 59.237 36.000 0.00 0.00 40.28 3.85
919 3042 5.305585 AGATTTTCTTTACAGAAGGCACGA 58.694 37.500 0.00 0.00 40.28 4.35
920 3043 5.613358 AGATTTTCTTTACAGAAGGCACG 57.387 39.130 0.00 0.00 40.28 5.34
921 3044 6.642540 CCAAAGATTTTCTTTACAGAAGGCAC 59.357 38.462 2.40 0.00 44.23 5.01
922 3045 6.323739 ACCAAAGATTTTCTTTACAGAAGGCA 59.676 34.615 2.40 0.00 44.23 4.75
923 3046 6.749139 ACCAAAGATTTTCTTTACAGAAGGC 58.251 36.000 2.40 0.00 44.23 4.35
924 3047 8.413229 TGAACCAAAGATTTTCTTTACAGAAGG 58.587 33.333 2.40 2.24 44.23 3.46
925 3048 9.237846 GTGAACCAAAGATTTTCTTTACAGAAG 57.762 33.333 2.40 0.00 44.23 2.85
926 3049 8.194769 GGTGAACCAAAGATTTTCTTTACAGAA 58.805 33.333 2.40 0.00 44.23 3.02
927 3050 7.340743 TGGTGAACCAAAGATTTTCTTTACAGA 59.659 33.333 0.00 0.00 44.23 3.41
937 3060 3.823304 GAGAGCTGGTGAACCAAAGATTT 59.177 43.478 3.33 0.00 46.97 2.17
963 3086 0.108804 TTGAGCTAGGTACGTGCAGC 60.109 55.000 5.86 6.93 34.34 5.25
964 3087 1.914634 CTTGAGCTAGGTACGTGCAG 58.085 55.000 5.86 0.00 34.34 4.41
965 3088 0.108804 GCTTGAGCTAGGTACGTGCA 60.109 55.000 5.86 0.00 38.21 4.57
966 3089 2.666989 GCTTGAGCTAGGTACGTGC 58.333 57.895 0.00 0.00 38.21 5.34
1708 3863 1.463056 CGCAGAGGAAATAACACGCAA 59.537 47.619 0.00 0.00 0.00 4.85
1712 3867 2.092211 CACGACGCAGAGGAAATAACAC 59.908 50.000 0.00 0.00 0.00 3.32
1751 3911 1.458777 TCGTTCCGGGCCTGGATAT 60.459 57.895 34.28 0.00 38.00 1.63
1752 3912 2.042741 TCGTTCCGGGCCTGGATA 60.043 61.111 34.28 21.05 38.00 2.59
1753 3913 3.782443 GTCGTTCCGGGCCTGGAT 61.782 66.667 34.28 0.00 38.00 3.41
1848 4008 1.630369 CCATCCTTGTCCTTGGTCTCA 59.370 52.381 0.00 0.00 0.00 3.27
1881 4041 2.546795 GCCTCCGTCGATGAGATTGAAT 60.547 50.000 14.49 0.00 31.26 2.57
1974 4142 5.502382 CGTGGACGTCATAGAAATTCCATTG 60.502 44.000 18.91 0.00 35.63 2.82
1997 4165 7.700322 ACATATCAAAATAGAGCACAGTACG 57.300 36.000 0.00 0.00 0.00 3.67
1998 4166 9.098355 TCAACATATCAAAATAGAGCACAGTAC 57.902 33.333 0.00 0.00 0.00 2.73
2166 4339 1.884444 GGCGTCGAACTTCTCCTCT 59.116 57.895 0.00 0.00 0.00 3.69
2367 4540 1.239296 TGGACACGTCGACGGAAGAT 61.239 55.000 37.89 20.00 44.95 2.40
2370 4543 2.332514 GTGGACACGTCGACGGAA 59.667 61.111 37.89 17.75 44.95 4.30
2391 4564 0.734253 CGAGCCTGTTGAGGTTCTCG 60.734 60.000 0.00 0.00 45.30 4.04
2481 4654 3.998913 TTGGTGCCTCTATTGTCATCA 57.001 42.857 0.00 0.00 0.00 3.07
2484 4657 3.370846 CCTCATTGGTGCCTCTATTGTCA 60.371 47.826 0.00 0.00 0.00 3.58
2502 4675 4.836825 CAAAACTGATTAGCTCCTCCTCA 58.163 43.478 0.00 0.00 0.00 3.86
2557 4730 1.338579 GGTGACTCCCTTCTTCTGCAG 60.339 57.143 7.63 7.63 0.00 4.41
2614 4787 9.107177 ACGAGTTTAGCTATATACGTATATGCT 57.893 33.333 31.75 31.75 37.12 3.79
2621 4794 8.926710 ACGTAATACGAGTTTAGCTATATACGT 58.073 33.333 20.34 16.88 46.05 3.57
2622 4795 9.192489 CACGTAATACGAGTTTAGCTATATACG 57.808 37.037 20.34 2.35 46.05 3.06
2639 4812 7.775397 TCCTAATTTGCCTTACACGTAATAC 57.225 36.000 0.00 0.00 0.00 1.89
2664 4841 3.006110 TGGTTCGACCGTCTATTGACTTT 59.994 43.478 5.76 0.00 42.58 2.66
2696 4873 5.077134 AGCTTTGGCAGTTCAATATTTCC 57.923 39.130 0.00 0.00 41.70 3.13
2747 4924 5.130350 TCTCCCACTTTACAACTTCTTTGG 58.870 41.667 0.00 0.00 39.84 3.28
2752 4929 6.877611 TTCATTCTCCCACTTTACAACTTC 57.122 37.500 0.00 0.00 0.00 3.01
2838 5016 7.953752 AGACCTATATTTAGAAACGGAGGAAG 58.046 38.462 0.00 0.00 0.00 3.46
2839 5017 7.909485 AGACCTATATTTAGAAACGGAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
2840 5018 7.909485 AAGACCTATATTTAGAAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
2841 5019 8.422566 AGAAAGACCTATATTTAGAAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
2856 5034 9.883142 CTTGTTGAAATCTCTAGAAAGACCTAT 57.117 33.333 0.00 0.00 0.00 2.57
2857 5035 8.871125 ACTTGTTGAAATCTCTAGAAAGACCTA 58.129 33.333 0.00 0.00 0.00 3.08
2858 5036 7.659390 CACTTGTTGAAATCTCTAGAAAGACCT 59.341 37.037 0.00 0.00 0.00 3.85
2859 5037 7.657761 TCACTTGTTGAAATCTCTAGAAAGACC 59.342 37.037 0.00 0.00 0.00 3.85
2860 5038 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2861 5039 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2862 5040 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2868 5046 9.737427 CGTATATAGTCACTTGTTGAAATCTCT 57.263 33.333 0.00 0.00 35.39 3.10
2869 5047 8.969267 CCGTATATAGTCACTTGTTGAAATCTC 58.031 37.037 0.00 0.00 35.39 2.75
2870 5048 8.692710 TCCGTATATAGTCACTTGTTGAAATCT 58.307 33.333 0.00 0.00 35.39 2.40
2871 5049 8.867112 TCCGTATATAGTCACTTGTTGAAATC 57.133 34.615 0.00 0.00 35.39 2.17
2872 5050 7.438459 GCTCCGTATATAGTCACTTGTTGAAAT 59.562 37.037 0.00 0.00 35.39 2.17
2873 5051 6.755141 GCTCCGTATATAGTCACTTGTTGAAA 59.245 38.462 0.00 0.00 35.39 2.69
2874 5052 6.127563 TGCTCCGTATATAGTCACTTGTTGAA 60.128 38.462 0.00 0.00 35.39 2.69
2875 5053 5.358725 TGCTCCGTATATAGTCACTTGTTGA 59.641 40.000 0.00 0.00 0.00 3.18
2876 5054 5.588240 TGCTCCGTATATAGTCACTTGTTG 58.412 41.667 0.00 0.00 0.00 3.33
2877 5055 5.847111 TGCTCCGTATATAGTCACTTGTT 57.153 39.130 0.00 0.00 0.00 2.83
2878 5056 5.847111 TTGCTCCGTATATAGTCACTTGT 57.153 39.130 0.00 0.00 0.00 3.16
2879 5057 7.438160 TCATTTTGCTCCGTATATAGTCACTTG 59.562 37.037 0.00 0.00 0.00 3.16
2880 5058 7.497595 TCATTTTGCTCCGTATATAGTCACTT 58.502 34.615 0.00 0.00 0.00 3.16
2881 5059 7.050970 TCATTTTGCTCCGTATATAGTCACT 57.949 36.000 0.00 0.00 0.00 3.41
2882 5060 6.924060 ACTCATTTTGCTCCGTATATAGTCAC 59.076 38.462 0.00 0.00 0.00 3.67
2883 5061 6.923508 CACTCATTTTGCTCCGTATATAGTCA 59.076 38.462 0.00 0.00 0.00 3.41
2884 5062 7.145985 TCACTCATTTTGCTCCGTATATAGTC 58.854 38.462 0.00 0.00 0.00 2.59
2885 5063 7.050970 TCACTCATTTTGCTCCGTATATAGT 57.949 36.000 0.00 0.00 0.00 2.12
2886 5064 7.946655 TTCACTCATTTTGCTCCGTATATAG 57.053 36.000 0.00 0.00 0.00 1.31
2887 5065 8.367911 AGATTCACTCATTTTGCTCCGTATATA 58.632 33.333 0.00 0.00 0.00 0.86
2888 5066 7.220030 AGATTCACTCATTTTGCTCCGTATAT 58.780 34.615 0.00 0.00 0.00 0.86
2889 5067 6.582636 AGATTCACTCATTTTGCTCCGTATA 58.417 36.000 0.00 0.00 0.00 1.47
2890 5068 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2891 5069 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2892 5070 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2893 5071 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
2894 5072 8.465201 AGAAAATAGATTCACTCATTTTGCTCC 58.535 33.333 0.00 0.00 32.29 4.70
2924 5102 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
2926 5104 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
2927 5105 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
2928 5106 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
2929 5107 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
2930 5108 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
2931 5109 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
2932 5110 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
2933 5111 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
2934 5112 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
2935 5113 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
2948 5126 7.712204 TTTTAGGGATTTCAAATGGACTACC 57.288 36.000 0.00 0.00 0.00 3.18
2949 5127 9.020731 TCTTTTTAGGGATTTCAAATGGACTAC 57.979 33.333 0.00 0.00 0.00 2.73
2950 5128 9.020731 GTCTTTTTAGGGATTTCAAATGGACTA 57.979 33.333 0.00 0.00 0.00 2.59
2951 5129 7.730332 AGTCTTTTTAGGGATTTCAAATGGACT 59.270 33.333 0.00 0.00 0.00 3.85
2952 5130 7.896811 AGTCTTTTTAGGGATTTCAAATGGAC 58.103 34.615 0.00 0.00 0.00 4.02
2953 5131 8.491045 AAGTCTTTTTAGGGATTTCAAATGGA 57.509 30.769 0.00 0.00 0.00 3.41
2969 5147 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2970 5148 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2971 5149 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2972 5150 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2973 5151 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2974 5152 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2975 5153 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2976 5154 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2977 5155 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
2978 5156 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
2979 5157 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
2980 5158 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
2981 5159 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
2982 5160 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
2983 5161 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
2984 5162 3.744940 TTTCTACTCCCTCCGTTCCTA 57.255 47.619 0.00 0.00 0.00 2.94
2985 5163 2.617840 TTTCTACTCCCTCCGTTCCT 57.382 50.000 0.00 0.00 0.00 3.36
2986 5164 3.690475 TTTTTCTACTCCCTCCGTTCC 57.310 47.619 0.00 0.00 0.00 3.62
2987 5165 5.579904 GTGTATTTTTCTACTCCCTCCGTTC 59.420 44.000 0.00 0.00 0.00 3.95
2988 5166 5.012354 TGTGTATTTTTCTACTCCCTCCGTT 59.988 40.000 0.00 0.00 0.00 4.44
2989 5167 4.529377 TGTGTATTTTTCTACTCCCTCCGT 59.471 41.667 0.00 0.00 0.00 4.69
2990 5168 5.080969 TGTGTATTTTTCTACTCCCTCCG 57.919 43.478 0.00 0.00 0.00 4.63
2991 5169 6.318900 CCAATGTGTATTTTTCTACTCCCTCC 59.681 42.308 0.00 0.00 0.00 4.30
2992 5170 6.183360 GCCAATGTGTATTTTTCTACTCCCTC 60.183 42.308 0.00 0.00 0.00 4.30
2993 5171 5.652452 GCCAATGTGTATTTTTCTACTCCCT 59.348 40.000 0.00 0.00 0.00 4.20
2994 5172 5.163550 GGCCAATGTGTATTTTTCTACTCCC 60.164 44.000 0.00 0.00 0.00 4.30
2995 5173 5.163550 GGGCCAATGTGTATTTTTCTACTCC 60.164 44.000 4.39 0.00 0.00 3.85
2996 5174 5.163550 GGGGCCAATGTGTATTTTTCTACTC 60.164 44.000 4.39 0.00 0.00 2.59
2997 5175 4.709886 GGGGCCAATGTGTATTTTTCTACT 59.290 41.667 4.39 0.00 0.00 2.57
2998 5176 4.142026 GGGGGCCAATGTGTATTTTTCTAC 60.142 45.833 4.39 0.00 0.00 2.59
2999 5177 4.027437 GGGGGCCAATGTGTATTTTTCTA 58.973 43.478 4.39 0.00 0.00 2.10
3000 5178 2.837591 GGGGGCCAATGTGTATTTTTCT 59.162 45.455 4.39 0.00 0.00 2.52
3001 5179 2.418060 CGGGGGCCAATGTGTATTTTTC 60.418 50.000 4.39 0.00 0.00 2.29
3002 5180 1.552792 CGGGGGCCAATGTGTATTTTT 59.447 47.619 4.39 0.00 0.00 1.94
3034 5212 1.299976 GGGTTTCAGATGTCGCCCT 59.700 57.895 0.00 0.00 33.58 5.19
3073 5251 2.024176 ATTTTGCAGTATCGTCGCCT 57.976 45.000 0.00 0.00 0.00 5.52
3074 5252 2.825086 AATTTTGCAGTATCGTCGCC 57.175 45.000 0.00 0.00 0.00 5.54
3075 5253 2.845967 CCAAATTTTGCAGTATCGTCGC 59.154 45.455 3.50 0.00 0.00 5.19
3076 5254 4.078363 ACCAAATTTTGCAGTATCGTCG 57.922 40.909 3.50 0.00 0.00 5.12
3077 5255 7.247728 TGAATACCAAATTTTGCAGTATCGTC 58.752 34.615 3.50 4.31 0.00 4.20
3078 5256 7.151999 TGAATACCAAATTTTGCAGTATCGT 57.848 32.000 3.50 0.00 0.00 3.73
3165 5373 9.599866 TTGATACAACTGACATAGTTCCTTATG 57.400 33.333 0.00 0.00 46.55 1.90
3199 5774 8.108378 TCCCATCCTCCAACTTATTGTTATTA 57.892 34.615 0.00 0.00 37.07 0.98
3240 5815 2.202797 CCTCAGTGCGTCCCGATG 60.203 66.667 0.00 0.00 0.00 3.84
3244 5819 2.266055 CCTTCCTCAGTGCGTCCC 59.734 66.667 0.00 0.00 0.00 4.46
3245 5820 1.255667 TACCCTTCCTCAGTGCGTCC 61.256 60.000 0.00 0.00 0.00 4.79
3251 5826 1.265454 CCGCCTTACCCTTCCTCAGT 61.265 60.000 0.00 0.00 0.00 3.41
3252 5827 1.522569 CCGCCTTACCCTTCCTCAG 59.477 63.158 0.00 0.00 0.00 3.35
3253 5828 2.666098 GCCGCCTTACCCTTCCTCA 61.666 63.158 0.00 0.00 0.00 3.86
3254 5829 1.047034 TAGCCGCCTTACCCTTCCTC 61.047 60.000 0.00 0.00 0.00 3.71
3255 5830 1.002533 TAGCCGCCTTACCCTTCCT 59.997 57.895 0.00 0.00 0.00 3.36
3257 5832 1.446366 CCTAGCCGCCTTACCCTTC 59.554 63.158 0.00 0.00 0.00 3.46
3263 5838 1.134220 CAATGAACCCTAGCCGCCTTA 60.134 52.381 0.00 0.00 0.00 2.69
3264 5839 0.394352 CAATGAACCCTAGCCGCCTT 60.394 55.000 0.00 0.00 0.00 4.35
3269 5844 0.183731 CCTCCCAATGAACCCTAGCC 59.816 60.000 0.00 0.00 0.00 3.93
3275 5850 0.620556 TGCTCTCCTCCCAATGAACC 59.379 55.000 0.00 0.00 0.00 3.62
3281 5856 0.034896 GAAACGTGCTCTCCTCCCAA 59.965 55.000 0.00 0.00 0.00 4.12
3295 5870 4.798387 GCCCAACATATAAAGCAAGAAACG 59.202 41.667 0.00 0.00 0.00 3.60
3302 5877 3.636300 GACATGGCCCAACATATAAAGCA 59.364 43.478 0.00 0.00 0.00 3.91
3304 5879 4.261741 GCTGACATGGCCCAACATATAAAG 60.262 45.833 0.00 0.00 0.00 1.85
3319 5894 0.447801 GTTTACCCTGCGCTGACATG 59.552 55.000 16.65 3.93 0.00 3.21
3320 5895 0.324943 AGTTTACCCTGCGCTGACAT 59.675 50.000 16.65 3.15 0.00 3.06
3331 5906 4.758165 TGACCGATTTTTCTCAGTTTACCC 59.242 41.667 0.00 0.00 0.00 3.69
3339 5914 8.568676 TGGTTTATTATGACCGATTTTTCTCA 57.431 30.769 0.00 0.00 38.81 3.27
3391 5966 1.257743 TTCTTCGTCTGTCCTCCCAG 58.742 55.000 0.00 0.00 0.00 4.45
3410 6022 4.340617 TGTCTCCATTTTTATTCCGGCTT 58.659 39.130 0.00 0.00 0.00 4.35
3411 6023 3.947834 CTGTCTCCATTTTTATTCCGGCT 59.052 43.478 0.00 0.00 0.00 5.52
3412 6024 3.066760 CCTGTCTCCATTTTTATTCCGGC 59.933 47.826 0.00 0.00 0.00 6.13
3413 6025 3.066760 GCCTGTCTCCATTTTTATTCCGG 59.933 47.826 0.00 0.00 0.00 5.14
3414 6026 3.242739 CGCCTGTCTCCATTTTTATTCCG 60.243 47.826 0.00 0.00 0.00 4.30
3415 6027 3.066760 CCGCCTGTCTCCATTTTTATTCC 59.933 47.826 0.00 0.00 0.00 3.01
3416 6028 3.945285 TCCGCCTGTCTCCATTTTTATTC 59.055 43.478 0.00 0.00 0.00 1.75
3417 6029 3.963129 TCCGCCTGTCTCCATTTTTATT 58.037 40.909 0.00 0.00 0.00 1.40
3418 6030 3.644966 TCCGCCTGTCTCCATTTTTAT 57.355 42.857 0.00 0.00 0.00 1.40
3419 6031 3.008594 TCTTCCGCCTGTCTCCATTTTTA 59.991 43.478 0.00 0.00 0.00 1.52
3420 6032 2.162681 CTTCCGCCTGTCTCCATTTTT 58.837 47.619 0.00 0.00 0.00 1.94
3421 6033 1.351017 TCTTCCGCCTGTCTCCATTTT 59.649 47.619 0.00 0.00 0.00 1.82
3422 6034 0.984230 TCTTCCGCCTGTCTCCATTT 59.016 50.000 0.00 0.00 0.00 2.32
3423 6035 0.984230 TTCTTCCGCCTGTCTCCATT 59.016 50.000 0.00 0.00 0.00 3.16
3424 6036 0.984230 TTTCTTCCGCCTGTCTCCAT 59.016 50.000 0.00 0.00 0.00 3.41
3425 6037 0.762418 TTTTCTTCCGCCTGTCTCCA 59.238 50.000 0.00 0.00 0.00 3.86
3426 6038 2.115343 ATTTTCTTCCGCCTGTCTCC 57.885 50.000 0.00 0.00 0.00 3.71
3427 6039 3.074412 TCAATTTTCTTCCGCCTGTCTC 58.926 45.455 0.00 0.00 0.00 3.36
3428 6040 2.814336 GTCAATTTTCTTCCGCCTGTCT 59.186 45.455 0.00 0.00 0.00 3.41
3429 6041 2.552315 TGTCAATTTTCTTCCGCCTGTC 59.448 45.455 0.00 0.00 0.00 3.51
3437 6049 7.202526 TGTTTCATCCTGTGTCAATTTTCTTC 58.797 34.615 0.00 0.00 0.00 2.87
3547 6160 9.173021 TGACAAGACTTGAGTTTATTTTTCTGA 57.827 29.630 21.95 0.00 0.00 3.27
3550 6163 9.950680 TCATGACAAGACTTGAGTTTATTTTTC 57.049 29.630 21.95 5.33 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.