Multiple sequence alignment - TraesCS4D01G285100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G285100 chr4D 100.000 3978 0 0 1 3978 455891080 455895057 0.000000e+00 7347.0
1 TraesCS4D01G285100 chr4D 89.091 110 10 2 3070 3177 371926900 371926791 6.930000e-28 135.0
2 TraesCS4D01G285100 chr4D 78.788 198 24 15 499 689 455784130 455784316 2.510000e-22 117.0
3 TraesCS4D01G285100 chr4A 89.342 2749 140 58 399 3075 11719084 11716417 0.000000e+00 3312.0
4 TraesCS4D01G285100 chr4A 94.934 829 32 6 3155 3978 11716420 11715597 0.000000e+00 1290.0
5 TraesCS4D01G285100 chr4A 93.258 89 5 1 1 88 11719157 11719069 3.230000e-26 130.0
6 TraesCS4D01G285100 chr4B 95.630 1350 48 5 1731 3073 570085559 570086904 0.000000e+00 2156.0
7 TraesCS4D01G285100 chr4B 93.622 831 34 8 3155 3975 570086900 570087721 0.000000e+00 1223.0
8 TraesCS4D01G285100 chr4B 87.372 681 36 19 420 1092 570084193 570084831 0.000000e+00 736.0
9 TraesCS4D01G285100 chr4B 86.535 505 45 12 1235 1735 570085046 570085531 5.850000e-148 534.0
10 TraesCS4D01G285100 chr4B 85.714 315 33 8 94 399 659349406 659349095 4.960000e-84 322.0
11 TraesCS4D01G285100 chr6A 86.495 311 32 6 99 400 46549161 46548852 2.290000e-87 333.0
12 TraesCS4D01G285100 chr6A 86.275 306 32 6 101 398 422775948 422776251 1.380000e-84 324.0
13 TraesCS4D01G285100 chr6D 86.601 306 30 7 101 398 454889536 454889234 1.070000e-85 327.0
14 TraesCS4D01G285100 chr6D 86.275 306 31 7 101 398 454923091 454922789 4.960000e-84 322.0
15 TraesCS4D01G285100 chr3A 86.513 304 32 5 101 396 111839796 111840098 3.830000e-85 326.0
16 TraesCS4D01G285100 chr5A 85.714 308 31 8 103 400 538101173 538101477 2.980000e-81 313.0
17 TraesCS4D01G285100 chr7A 85.437 309 34 7 100 399 709593941 709594247 1.070000e-80 311.0
18 TraesCS4D01G285100 chr7A 85.714 112 7 4 82 185 9434850 9434740 4.200000e-20 110.0
19 TraesCS4D01G285100 chr2A 85.342 307 35 7 103 401 378844415 378844111 3.860000e-80 309.0
20 TraesCS4D01G285100 chr2A 78.378 148 30 2 1980 2126 778789174 778789320 1.180000e-15 95.3
21 TraesCS4D01G285100 chrUn 82.716 324 43 8 86 398 38615037 38615358 3.920000e-70 276.0
22 TraesCS4D01G285100 chrUn 82.099 324 45 8 86 398 38594534 38594855 8.480000e-67 265.0
23 TraesCS4D01G285100 chrUn 96.552 87 3 0 3070 3156 378270654 378270568 1.150000e-30 145.0
24 TraesCS4D01G285100 chrUn 96.552 87 3 0 3070 3156 447954260 447954346 1.150000e-30 145.0
25 TraesCS4D01G285100 chrUn 81.176 85 8 3 91 168 365995068 365995151 1.190000e-05 62.1
26 TraesCS4D01G285100 chrUn 81.176 85 8 3 91 168 414315128 414315211 1.190000e-05 62.1
27 TraesCS4D01G285100 chrUn 81.176 85 8 3 91 168 474271735 474271652 1.190000e-05 62.1
28 TraesCS4D01G285100 chr7D 81.877 309 48 6 93 397 608442497 608442801 1.830000e-63 254.0
29 TraesCS4D01G285100 chr7D 96.629 89 3 0 3069 3157 171549001 171549089 8.910000e-32 148.0
30 TraesCS4D01G285100 chr3D 96.629 89 3 0 3069 3157 545547882 545547794 8.910000e-32 148.0
31 TraesCS4D01G285100 chr3D 83.846 130 19 2 2001 2129 61703528 61703400 5.400000e-24 122.0
32 TraesCS4D01G285100 chr3B 96.591 88 3 0 3067 3154 749076551 749076638 3.200000e-31 147.0
33 TraesCS4D01G285100 chr3B 83.846 130 19 2 2001 2129 99171500 99171372 5.400000e-24 122.0
34 TraesCS4D01G285100 chr5B 92.708 96 7 0 3070 3165 464321827 464321732 5.360000e-29 139.0
35 TraesCS4D01G285100 chr5B 89.908 109 7 3 3055 3161 458719760 458719866 1.930000e-28 137.0
36 TraesCS4D01G285100 chr5B 79.747 158 28 4 1977 2132 432323431 432323586 1.170000e-20 111.0
37 TraesCS4D01G285100 chr5B 79.487 156 32 0 1974 2129 582773754 582773909 1.170000e-20 111.0
38 TraesCS4D01G285100 chr1B 91.089 101 9 0 3063 3163 619215343 619215443 1.930000e-28 137.0
39 TraesCS4D01G285100 chr5D 80.255 157 29 2 1974 2129 475382333 475382488 2.510000e-22 117.0
40 TraesCS4D01G285100 chr5D 79.747 158 28 4 1977 2132 365992579 365992734 1.170000e-20 111.0
41 TraesCS4D01G285100 chr2D 82.353 136 20 3 2002 2135 512686927 512687060 9.030000e-22 115.0
42 TraesCS4D01G285100 chr2D 78.523 149 28 4 1980 2126 634658584 634658438 1.180000e-15 95.3
43 TraesCS4D01G285100 chr2B 79.433 141 28 1 1980 2120 777618670 777618531 9.100000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G285100 chr4D 455891080 455895057 3977 False 7347.000000 7347 100.000000 1 3978 1 chr4D.!!$F2 3977
1 TraesCS4D01G285100 chr4A 11715597 11719157 3560 True 1577.333333 3312 92.511333 1 3978 3 chr4A.!!$R1 3977
2 TraesCS4D01G285100 chr4B 570084193 570087721 3528 False 1162.250000 2156 90.789750 420 3975 4 chr4B.!!$F1 3555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 109 0.036483 TTGCAGAGCATAGCGAACCA 60.036 50.0 0.0 0.0 38.76 3.67 F
108 110 0.036483 TGCAGAGCATAGCGAACCAA 60.036 50.0 0.0 0.0 31.71 3.67 F
1366 1481 0.036732 TCGCCTTTGCTGTTCTCCAT 59.963 50.0 0.0 0.0 34.43 3.41 F
1912 2063 0.036952 ACTCGGTGGCAGATCAACAG 60.037 55.0 0.0 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1177 1258 0.249741 CCCATAGGCTCCGTAAACCG 60.250 60.0 0.00 0.0 0.00 4.44 R
1653 1771 0.544833 TGCACATGCTTTCCCCCATT 60.545 50.0 5.31 0.0 42.66 3.16 R
2353 2504 0.402121 ACTCTTCTCCCTTTGCCCAC 59.598 55.0 0.00 0.0 0.00 4.61 R
3140 3297 0.549950 CTAGTACTCCCTCCGTCCCA 59.450 60.0 0.00 0.0 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.451748 AGTTAGTCAAACTCAAAGAAGTTTCAC 58.548 33.333 0.00 0.00 45.64 3.18
77 79 7.820044 GTTTGACTTGATACAAACCAAACAA 57.180 32.000 21.57 0.00 45.41 2.83
78 80 8.245701 GTTTGACTTGATACAAACCAAACAAA 57.754 30.769 21.57 0.00 45.41 2.83
79 81 7.820044 TTGACTTGATACAAACCAAACAAAC 57.180 32.000 0.00 0.00 0.00 2.93
80 82 6.030849 TGACTTGATACAAACCAAACAAACG 58.969 36.000 0.00 0.00 0.00 3.60
81 83 5.344884 ACTTGATACAAACCAAACAAACGG 58.655 37.500 0.00 0.00 0.00 4.44
82 84 5.125739 ACTTGATACAAACCAAACAAACGGA 59.874 36.000 0.00 0.00 0.00 4.69
83 85 5.176407 TGATACAAACCAAACAAACGGAG 57.824 39.130 0.00 0.00 0.00 4.63
84 86 2.287393 ACAAACCAAACAAACGGAGC 57.713 45.000 0.00 0.00 0.00 4.70
85 87 1.546476 ACAAACCAAACAAACGGAGCA 59.454 42.857 0.00 0.00 0.00 4.26
86 88 2.167487 ACAAACCAAACAAACGGAGCAT 59.833 40.909 0.00 0.00 0.00 3.79
87 89 3.381908 ACAAACCAAACAAACGGAGCATA 59.618 39.130 0.00 0.00 0.00 3.14
88 90 4.038642 ACAAACCAAACAAACGGAGCATAT 59.961 37.500 0.00 0.00 0.00 1.78
89 91 4.864704 AACCAAACAAACGGAGCATATT 57.135 36.364 0.00 0.00 0.00 1.28
90 92 4.173036 ACCAAACAAACGGAGCATATTG 57.827 40.909 0.00 0.00 0.00 1.90
91 93 2.923020 CCAAACAAACGGAGCATATTGC 59.077 45.455 0.00 0.00 45.46 3.56
102 104 2.522372 GCATATTGCAGAGCATAGCG 57.478 50.000 0.00 0.00 44.26 4.26
103 105 2.071540 GCATATTGCAGAGCATAGCGA 58.928 47.619 0.00 0.00 44.26 4.93
104 106 2.481568 GCATATTGCAGAGCATAGCGAA 59.518 45.455 0.00 0.00 44.26 4.70
105 107 3.666374 GCATATTGCAGAGCATAGCGAAC 60.666 47.826 0.00 0.00 44.26 3.95
106 108 1.303309 ATTGCAGAGCATAGCGAACC 58.697 50.000 0.00 0.00 38.76 3.62
107 109 0.036483 TTGCAGAGCATAGCGAACCA 60.036 50.000 0.00 0.00 38.76 3.67
108 110 0.036483 TGCAGAGCATAGCGAACCAA 60.036 50.000 0.00 0.00 31.71 3.67
109 111 0.375106 GCAGAGCATAGCGAACCAAC 59.625 55.000 0.00 0.00 0.00 3.77
110 112 1.009829 CAGAGCATAGCGAACCAACC 58.990 55.000 0.00 0.00 0.00 3.77
111 113 0.905357 AGAGCATAGCGAACCAACCT 59.095 50.000 0.00 0.00 0.00 3.50
112 114 1.009829 GAGCATAGCGAACCAACCTG 58.990 55.000 0.00 0.00 0.00 4.00
113 115 0.324943 AGCATAGCGAACCAACCTGT 59.675 50.000 0.00 0.00 0.00 4.00
114 116 0.447801 GCATAGCGAACCAACCTGTG 59.552 55.000 0.00 0.00 0.00 3.66
127 129 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
128 130 1.271926 ACCTGTGGTTGGATGGTTAGC 60.272 52.381 0.00 0.00 27.29 3.09
129 131 1.004745 CCTGTGGTTGGATGGTTAGCT 59.995 52.381 0.00 0.00 0.00 3.32
130 132 2.086869 CTGTGGTTGGATGGTTAGCTG 58.913 52.381 0.00 0.00 0.00 4.24
131 133 1.271871 TGTGGTTGGATGGTTAGCTGG 60.272 52.381 0.00 0.00 0.00 4.85
132 134 1.072266 TGGTTGGATGGTTAGCTGGT 58.928 50.000 0.00 0.00 0.00 4.00
133 135 2.026636 GTGGTTGGATGGTTAGCTGGTA 60.027 50.000 0.00 0.00 0.00 3.25
134 136 2.849943 TGGTTGGATGGTTAGCTGGTAT 59.150 45.455 0.00 0.00 0.00 2.73
135 137 3.118038 TGGTTGGATGGTTAGCTGGTATC 60.118 47.826 0.00 0.00 0.00 2.24
136 138 3.477530 GTTGGATGGTTAGCTGGTATCC 58.522 50.000 0.00 5.36 38.20 2.59
137 139 2.054799 TGGATGGTTAGCTGGTATCCC 58.945 52.381 14.58 4.37 37.17 3.85
138 140 1.351350 GGATGGTTAGCTGGTATCCCC 59.649 57.143 10.56 3.42 32.93 4.81
139 141 2.054799 GATGGTTAGCTGGTATCCCCA 58.945 52.381 10.56 7.08 42.51 4.96
146 148 2.694616 TGGTATCCCCAGCCCACC 60.695 66.667 0.00 0.00 38.72 4.61
147 149 2.694616 GGTATCCCCAGCCCACCA 60.695 66.667 0.00 0.00 0.00 4.17
148 150 2.757124 GGTATCCCCAGCCCACCAG 61.757 68.421 0.00 0.00 0.00 4.00
149 151 1.692749 GTATCCCCAGCCCACCAGA 60.693 63.158 0.00 0.00 0.00 3.86
150 152 1.384502 TATCCCCAGCCCACCAGAG 60.385 63.158 0.00 0.00 0.00 3.35
151 153 2.194951 TATCCCCAGCCCACCAGAGT 62.195 60.000 0.00 0.00 0.00 3.24
152 154 3.260100 CCCCAGCCCACCAGAGTT 61.260 66.667 0.00 0.00 0.00 3.01
153 155 2.352805 CCCAGCCCACCAGAGTTC 59.647 66.667 0.00 0.00 0.00 3.01
154 156 2.528818 CCCAGCCCACCAGAGTTCA 61.529 63.158 0.00 0.00 0.00 3.18
155 157 1.455849 CCAGCCCACCAGAGTTCAA 59.544 57.895 0.00 0.00 0.00 2.69
156 158 0.178992 CCAGCCCACCAGAGTTCAAA 60.179 55.000 0.00 0.00 0.00 2.69
157 159 1.548582 CCAGCCCACCAGAGTTCAAAT 60.549 52.381 0.00 0.00 0.00 2.32
158 160 1.815003 CAGCCCACCAGAGTTCAAATC 59.185 52.381 0.00 0.00 0.00 2.17
159 161 1.177401 GCCCACCAGAGTTCAAATCC 58.823 55.000 0.00 0.00 0.00 3.01
160 162 1.272147 GCCCACCAGAGTTCAAATCCT 60.272 52.381 0.00 0.00 0.00 3.24
161 163 2.440409 CCCACCAGAGTTCAAATCCTG 58.560 52.381 0.00 0.00 0.00 3.86
165 167 1.815003 CCAGAGTTCAAATCCTGGTGC 59.185 52.381 0.00 0.00 40.84 5.01
166 168 2.553904 CCAGAGTTCAAATCCTGGTGCT 60.554 50.000 0.00 0.00 40.84 4.40
167 169 2.746362 CAGAGTTCAAATCCTGGTGCTC 59.254 50.000 0.00 0.00 0.00 4.26
168 170 2.373169 AGAGTTCAAATCCTGGTGCTCA 59.627 45.455 0.00 0.00 0.00 4.26
169 171 2.485814 GAGTTCAAATCCTGGTGCTCAC 59.514 50.000 0.00 0.00 0.00 3.51
170 172 2.158623 AGTTCAAATCCTGGTGCTCACA 60.159 45.455 2.21 0.00 0.00 3.58
171 173 2.821969 GTTCAAATCCTGGTGCTCACAT 59.178 45.455 2.21 0.00 0.00 3.21
172 174 3.159213 TCAAATCCTGGTGCTCACATT 57.841 42.857 2.21 0.00 0.00 2.71
173 175 3.499338 TCAAATCCTGGTGCTCACATTT 58.501 40.909 2.21 0.00 0.00 2.32
174 176 4.661222 TCAAATCCTGGTGCTCACATTTA 58.339 39.130 2.21 0.00 0.00 1.40
175 177 5.263599 TCAAATCCTGGTGCTCACATTTAT 58.736 37.500 2.21 0.00 0.00 1.40
176 178 5.357878 TCAAATCCTGGTGCTCACATTTATC 59.642 40.000 2.21 0.00 0.00 1.75
177 179 3.281727 TCCTGGTGCTCACATTTATCC 57.718 47.619 2.21 0.00 0.00 2.59
178 180 2.846206 TCCTGGTGCTCACATTTATCCT 59.154 45.455 2.21 0.00 0.00 3.24
179 181 2.947652 CCTGGTGCTCACATTTATCCTG 59.052 50.000 2.21 0.00 0.00 3.86
180 182 2.357009 CTGGTGCTCACATTTATCCTGC 59.643 50.000 2.21 0.00 0.00 4.85
181 183 2.290832 TGGTGCTCACATTTATCCTGCA 60.291 45.455 2.21 0.00 0.00 4.41
182 184 2.954318 GGTGCTCACATTTATCCTGCAT 59.046 45.455 2.21 0.00 0.00 3.96
183 185 3.382546 GGTGCTCACATTTATCCTGCATT 59.617 43.478 2.21 0.00 0.00 3.56
184 186 4.142093 GGTGCTCACATTTATCCTGCATTT 60.142 41.667 2.21 0.00 0.00 2.32
185 187 5.067674 GGTGCTCACATTTATCCTGCATTTA 59.932 40.000 2.21 0.00 0.00 1.40
186 188 6.239120 GGTGCTCACATTTATCCTGCATTTAT 60.239 38.462 2.21 0.00 0.00 1.40
187 189 7.205297 GTGCTCACATTTATCCTGCATTTATT 58.795 34.615 0.00 0.00 0.00 1.40
188 190 7.707893 GTGCTCACATTTATCCTGCATTTATTT 59.292 33.333 0.00 0.00 0.00 1.40
189 191 8.259411 TGCTCACATTTATCCTGCATTTATTTT 58.741 29.630 0.00 0.00 0.00 1.82
190 192 9.748708 GCTCACATTTATCCTGCATTTATTTTA 57.251 29.630 0.00 0.00 0.00 1.52
200 202 8.485976 TCCTGCATTTATTTTAAAATTTCCGG 57.514 30.769 18.14 0.00 0.00 5.14
201 203 7.065204 TCCTGCATTTATTTTAAAATTTCCGGC 59.935 33.333 18.14 15.02 0.00 6.13
202 204 6.766084 TGCATTTATTTTAAAATTTCCGGCG 58.234 32.000 18.14 0.00 0.00 6.46
203 205 6.590292 TGCATTTATTTTAAAATTTCCGGCGA 59.410 30.769 18.14 0.00 0.00 5.54
204 206 7.278868 TGCATTTATTTTAAAATTTCCGGCGAT 59.721 29.630 18.14 0.00 0.00 4.58
205 207 7.582319 GCATTTATTTTAAAATTTCCGGCGATG 59.418 33.333 18.14 11.29 0.00 3.84
206 208 6.576551 TTATTTTAAAATTTCCGGCGATGC 57.423 33.333 18.14 0.00 0.00 3.91
207 209 3.577649 TTTAAAATTTCCGGCGATGCA 57.422 38.095 9.30 0.00 0.00 3.96
208 210 2.553079 TAAAATTTCCGGCGATGCAC 57.447 45.000 9.30 0.00 0.00 4.57
209 211 0.108851 AAAATTTCCGGCGATGCACC 60.109 50.000 9.30 0.00 0.00 5.01
210 212 0.965363 AAATTTCCGGCGATGCACCT 60.965 50.000 9.30 0.00 0.00 4.00
211 213 0.965363 AATTTCCGGCGATGCACCTT 60.965 50.000 9.30 0.00 0.00 3.50
212 214 1.376609 ATTTCCGGCGATGCACCTTC 61.377 55.000 9.30 0.00 0.00 3.46
213 215 2.739849 TTTCCGGCGATGCACCTTCA 62.740 55.000 9.30 0.00 0.00 3.02
214 216 3.197790 CCGGCGATGCACCTTCAG 61.198 66.667 9.30 0.00 0.00 3.02
215 217 2.434884 CGGCGATGCACCTTCAGT 60.435 61.111 0.00 0.00 0.00 3.41
223 225 2.260844 TGCACCTTCAGTGGAAAGAG 57.739 50.000 0.00 0.00 44.80 2.85
224 226 1.768275 TGCACCTTCAGTGGAAAGAGA 59.232 47.619 0.00 0.00 44.80 3.10
225 227 2.485479 TGCACCTTCAGTGGAAAGAGAC 60.485 50.000 0.00 0.00 44.80 3.36
226 228 2.408050 CACCTTCAGTGGAAAGAGACG 58.592 52.381 0.00 0.00 43.26 4.18
227 229 2.040178 ACCTTCAGTGGAAAGAGACGT 58.960 47.619 0.00 0.00 31.35 4.34
228 230 2.434702 ACCTTCAGTGGAAAGAGACGTT 59.565 45.455 0.00 0.00 31.35 3.99
229 231 3.060602 CCTTCAGTGGAAAGAGACGTTC 58.939 50.000 0.00 0.00 31.35 3.95
230 232 2.814280 TCAGTGGAAAGAGACGTTCC 57.186 50.000 8.94 8.94 44.19 3.62
231 233 1.343465 TCAGTGGAAAGAGACGTTCCC 59.657 52.381 12.26 5.76 43.43 3.97
232 234 0.317479 AGTGGAAAGAGACGTTCCCG 59.683 55.000 12.26 0.00 43.43 5.14
241 243 2.863153 ACGTTCCCGTCGACTACG 59.137 61.111 14.70 18.15 46.28 3.51
251 253 3.341848 CGACTACGAGGCGGCTAT 58.658 61.111 13.24 5.89 44.58 2.97
252 254 1.082038 CGACTACGAGGCGGCTATG 60.082 63.158 13.24 10.62 44.58 2.23
253 255 1.286260 GACTACGAGGCGGCTATGG 59.714 63.158 13.24 8.09 0.00 2.74
254 256 1.453762 GACTACGAGGCGGCTATGGT 61.454 60.000 13.24 11.72 0.00 3.55
255 257 1.007271 CTACGAGGCGGCTATGGTG 60.007 63.158 13.24 2.08 0.00 4.17
256 258 1.452953 CTACGAGGCGGCTATGGTGA 61.453 60.000 13.24 0.00 0.00 4.02
257 259 1.731433 TACGAGGCGGCTATGGTGAC 61.731 60.000 13.24 0.00 0.00 3.67
258 260 2.786495 CGAGGCGGCTATGGTGACT 61.786 63.158 13.24 0.00 0.00 3.41
259 261 1.522569 GAGGCGGCTATGGTGACTT 59.477 57.895 13.24 0.00 0.00 3.01
260 262 0.530870 GAGGCGGCTATGGTGACTTC 60.531 60.000 13.24 0.00 0.00 3.01
261 263 1.883084 GGCGGCTATGGTGACTTCG 60.883 63.158 0.00 0.00 0.00 3.79
262 264 1.153628 GCGGCTATGGTGACTTCGT 60.154 57.895 0.00 0.00 0.00 3.85
263 265 0.101759 GCGGCTATGGTGACTTCGTA 59.898 55.000 0.00 0.00 0.00 3.43
264 266 1.470285 GCGGCTATGGTGACTTCGTAA 60.470 52.381 0.00 0.00 0.00 3.18
265 267 2.883574 CGGCTATGGTGACTTCGTAAA 58.116 47.619 0.00 0.00 0.00 2.01
266 268 3.255725 CGGCTATGGTGACTTCGTAAAA 58.744 45.455 0.00 0.00 0.00 1.52
267 269 3.869246 CGGCTATGGTGACTTCGTAAAAT 59.131 43.478 0.00 0.00 0.00 1.82
268 270 4.025979 CGGCTATGGTGACTTCGTAAAATC 60.026 45.833 0.00 0.00 0.00 2.17
269 271 5.116882 GGCTATGGTGACTTCGTAAAATCT 58.883 41.667 0.00 0.00 0.00 2.40
270 272 5.234543 GGCTATGGTGACTTCGTAAAATCTC 59.765 44.000 0.00 0.00 0.00 2.75
271 273 5.810587 GCTATGGTGACTTCGTAAAATCTCA 59.189 40.000 0.00 0.00 0.00 3.27
272 274 6.312918 GCTATGGTGACTTCGTAAAATCTCAA 59.687 38.462 0.00 0.00 0.00 3.02
273 275 6.727824 ATGGTGACTTCGTAAAATCTCAAG 57.272 37.500 0.00 0.00 0.00 3.02
274 276 5.849510 TGGTGACTTCGTAAAATCTCAAGA 58.150 37.500 0.00 0.00 0.00 3.02
275 277 6.464222 TGGTGACTTCGTAAAATCTCAAGAT 58.536 36.000 0.00 0.00 36.07 2.40
276 278 6.368791 TGGTGACTTCGTAAAATCTCAAGATG 59.631 38.462 0.00 0.00 34.49 2.90
277 279 6.590292 GGTGACTTCGTAAAATCTCAAGATGA 59.410 38.462 0.00 0.00 34.49 2.92
278 280 7.278868 GGTGACTTCGTAAAATCTCAAGATGAT 59.721 37.037 0.00 0.00 34.49 2.45
279 281 9.302345 GTGACTTCGTAAAATCTCAAGATGATA 57.698 33.333 0.00 0.00 34.49 2.15
282 284 8.768955 ACTTCGTAAAATCTCAAGATGATATGC 58.231 33.333 0.00 0.00 34.49 3.14
283 285 7.658179 TCGTAAAATCTCAAGATGATATGCC 57.342 36.000 0.00 0.00 34.49 4.40
284 286 6.366061 TCGTAAAATCTCAAGATGATATGCCG 59.634 38.462 0.00 0.00 34.49 5.69
285 287 5.954296 AAAATCTCAAGATGATATGCCGG 57.046 39.130 0.00 0.00 34.49 6.13
286 288 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
287 289 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
288 290 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
289 291 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
290 292 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
291 293 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
292 294 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
293 295 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
294 296 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
295 297 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
296 298 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
297 299 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
298 300 3.134792 GCCGGCTCAGTCTCTCGA 61.135 66.667 22.15 0.00 0.00 4.04
299 301 2.701780 GCCGGCTCAGTCTCTCGAA 61.702 63.158 22.15 0.00 0.00 3.71
300 302 1.431440 CCGGCTCAGTCTCTCGAAG 59.569 63.158 0.00 0.00 0.00 3.79
301 303 1.431440 CGGCTCAGTCTCTCGAAGG 59.569 63.158 0.00 0.00 0.00 3.46
302 304 1.309499 CGGCTCAGTCTCTCGAAGGT 61.309 60.000 0.00 0.00 0.00 3.50
303 305 0.172352 GGCTCAGTCTCTCGAAGGTG 59.828 60.000 0.00 0.00 0.00 4.00
304 306 0.457681 GCTCAGTCTCTCGAAGGTGC 60.458 60.000 0.00 0.00 0.00 5.01
305 307 1.173043 CTCAGTCTCTCGAAGGTGCT 58.827 55.000 0.00 0.00 0.00 4.40
306 308 1.543802 CTCAGTCTCTCGAAGGTGCTT 59.456 52.381 0.00 0.00 0.00 3.91
307 309 2.750166 CTCAGTCTCTCGAAGGTGCTTA 59.250 50.000 0.00 0.00 0.00 3.09
308 310 3.357203 TCAGTCTCTCGAAGGTGCTTAT 58.643 45.455 0.00 0.00 0.00 1.73
309 311 4.524053 TCAGTCTCTCGAAGGTGCTTATA 58.476 43.478 0.00 0.00 0.00 0.98
310 312 4.576873 TCAGTCTCTCGAAGGTGCTTATAG 59.423 45.833 0.00 0.00 0.00 1.31
311 313 3.886505 AGTCTCTCGAAGGTGCTTATAGG 59.113 47.826 0.00 0.00 0.00 2.57
312 314 3.004944 GTCTCTCGAAGGTGCTTATAGGG 59.995 52.174 0.00 0.00 0.00 3.53
313 315 2.297597 CTCTCGAAGGTGCTTATAGGGG 59.702 54.545 0.00 0.00 0.00 4.79
314 316 2.040178 CTCGAAGGTGCTTATAGGGGT 58.960 52.381 0.00 0.00 0.00 4.95
315 317 3.117398 TCTCGAAGGTGCTTATAGGGGTA 60.117 47.826 0.00 0.00 0.00 3.69
316 318 3.228453 TCGAAGGTGCTTATAGGGGTAG 58.772 50.000 0.00 0.00 0.00 3.18
317 319 2.299297 CGAAGGTGCTTATAGGGGTAGG 59.701 54.545 0.00 0.00 0.00 3.18
318 320 3.584294 GAAGGTGCTTATAGGGGTAGGA 58.416 50.000 0.00 0.00 0.00 2.94
319 321 3.945283 AGGTGCTTATAGGGGTAGGAT 57.055 47.619 0.00 0.00 0.00 3.24
320 322 3.521727 AGGTGCTTATAGGGGTAGGATG 58.478 50.000 0.00 0.00 0.00 3.51
321 323 3.116317 AGGTGCTTATAGGGGTAGGATGT 60.116 47.826 0.00 0.00 0.00 3.06
322 324 3.008049 GGTGCTTATAGGGGTAGGATGTG 59.992 52.174 0.00 0.00 0.00 3.21
323 325 2.637872 TGCTTATAGGGGTAGGATGTGC 59.362 50.000 0.00 0.00 0.00 4.57
324 326 2.637872 GCTTATAGGGGTAGGATGTGCA 59.362 50.000 0.00 0.00 0.00 4.57
325 327 3.264450 GCTTATAGGGGTAGGATGTGCAT 59.736 47.826 0.00 0.00 0.00 3.96
326 328 4.836825 CTTATAGGGGTAGGATGTGCATG 58.163 47.826 0.00 0.00 0.00 4.06
327 329 2.190398 TAGGGGTAGGATGTGCATGT 57.810 50.000 0.00 0.00 0.00 3.21
328 330 1.298953 AGGGGTAGGATGTGCATGTT 58.701 50.000 0.00 0.00 0.00 2.71
329 331 1.212935 AGGGGTAGGATGTGCATGTTC 59.787 52.381 0.00 0.00 0.00 3.18
330 332 1.299541 GGGTAGGATGTGCATGTTCG 58.700 55.000 0.00 0.00 0.00 3.95
331 333 0.657840 GGTAGGATGTGCATGTTCGC 59.342 55.000 0.00 0.00 0.00 4.70
332 334 0.301687 GTAGGATGTGCATGTTCGCG 59.698 55.000 0.00 0.00 33.35 5.87
333 335 0.108377 TAGGATGTGCATGTTCGCGT 60.108 50.000 5.77 0.00 33.35 6.01
334 336 0.955428 AGGATGTGCATGTTCGCGTT 60.955 50.000 5.77 0.00 33.35 4.84
335 337 0.521242 GGATGTGCATGTTCGCGTTC 60.521 55.000 5.77 0.64 33.35 3.95
336 338 0.165727 GATGTGCATGTTCGCGTTCA 59.834 50.000 5.77 7.25 33.35 3.18
337 339 0.110238 ATGTGCATGTTCGCGTTCAC 60.110 50.000 5.77 7.05 33.35 3.18
338 340 1.278337 GTGCATGTTCGCGTTCACA 59.722 52.632 5.77 8.55 33.35 3.58
339 341 0.722469 GTGCATGTTCGCGTTCACAG 60.722 55.000 5.77 4.82 33.35 3.66
340 342 1.154413 GCATGTTCGCGTTCACAGG 60.154 57.895 5.77 10.84 0.00 4.00
341 343 1.497278 CATGTTCGCGTTCACAGGG 59.503 57.895 5.77 1.42 0.00 4.45
342 344 1.671054 ATGTTCGCGTTCACAGGGG 60.671 57.895 5.77 0.00 0.00 4.79
343 345 3.723348 GTTCGCGTTCACAGGGGC 61.723 66.667 5.77 0.00 0.00 5.80
347 349 4.681978 GCGTTCACAGGGGCGAGT 62.682 66.667 0.00 0.00 0.00 4.18
348 350 2.738521 CGTTCACAGGGGCGAGTG 60.739 66.667 0.00 0.00 37.10 3.51
349 351 2.426023 GTTCACAGGGGCGAGTGT 59.574 61.111 0.00 0.00 37.07 3.55
350 352 1.669440 GTTCACAGGGGCGAGTGTA 59.331 57.895 0.00 0.00 37.07 2.90
351 353 0.249398 GTTCACAGGGGCGAGTGTAT 59.751 55.000 0.00 0.00 37.07 2.29
352 354 0.249120 TTCACAGGGGCGAGTGTATG 59.751 55.000 0.00 0.00 37.07 2.39
353 355 1.815421 CACAGGGGCGAGTGTATGC 60.815 63.158 0.00 0.00 0.00 3.14
354 356 2.586079 CAGGGGCGAGTGTATGCG 60.586 66.667 0.00 0.00 0.00 4.73
359 361 2.911280 GCGAGTGTATGCGCGTAC 59.089 61.111 28.80 28.80 43.96 3.67
360 362 1.870458 GCGAGTGTATGCGCGTACA 60.870 57.895 32.99 32.99 43.96 2.90
361 363 1.206745 GCGAGTGTATGCGCGTACAT 61.207 55.000 37.10 27.03 43.96 2.29
362 364 1.922880 GCGAGTGTATGCGCGTACATA 60.923 52.381 37.10 18.80 43.96 2.29
372 374 3.869866 GCGTACATACAAGCGGTTG 57.130 52.632 24.85 24.85 39.82 3.77
373 375 0.247537 GCGTACATACAAGCGGTTGC 60.248 55.000 26.22 6.77 37.14 4.17
383 385 3.156334 GCGGTTGCGTCTGTACTG 58.844 61.111 0.00 0.00 0.00 2.74
384 386 1.663702 GCGGTTGCGTCTGTACTGT 60.664 57.895 0.00 0.00 0.00 3.55
385 387 1.886861 GCGGTTGCGTCTGTACTGTG 61.887 60.000 0.00 0.00 0.00 3.66
386 388 0.596600 CGGTTGCGTCTGTACTGTGT 60.597 55.000 0.00 0.00 0.00 3.72
387 389 1.578583 GGTTGCGTCTGTACTGTGTT 58.421 50.000 0.00 0.00 0.00 3.32
388 390 1.937899 GGTTGCGTCTGTACTGTGTTT 59.062 47.619 0.00 0.00 0.00 2.83
389 391 3.125316 GGTTGCGTCTGTACTGTGTTTA 58.875 45.455 0.00 0.00 0.00 2.01
390 392 3.556775 GGTTGCGTCTGTACTGTGTTTAA 59.443 43.478 0.00 0.00 0.00 1.52
391 393 4.034279 GGTTGCGTCTGTACTGTGTTTAAA 59.966 41.667 0.00 0.00 0.00 1.52
392 394 5.195379 GTTGCGTCTGTACTGTGTTTAAAG 58.805 41.667 0.00 0.00 0.00 1.85
393 395 4.684877 TGCGTCTGTACTGTGTTTAAAGA 58.315 39.130 0.00 0.00 0.00 2.52
394 396 5.110598 TGCGTCTGTACTGTGTTTAAAGAA 58.889 37.500 0.00 0.00 0.00 2.52
395 397 5.581479 TGCGTCTGTACTGTGTTTAAAGAAA 59.419 36.000 0.00 0.00 0.00 2.52
396 398 6.092396 TGCGTCTGTACTGTGTTTAAAGAAAA 59.908 34.615 0.00 0.00 0.00 2.29
397 399 6.962678 GCGTCTGTACTGTGTTTAAAGAAAAA 59.037 34.615 0.00 0.00 0.00 1.94
423 425 6.466885 ACTAACGGAGCATACTGTAGAAAT 57.533 37.500 0.00 0.00 0.00 2.17
526 529 2.203611 CACCCATGCACCCACCAA 60.204 61.111 0.00 0.00 0.00 3.67
529 532 2.285024 CCCATGCACCCACCAAAGG 61.285 63.158 0.00 0.00 0.00 3.11
531 534 2.200930 ATGCACCCACCAAAGGCA 59.799 55.556 0.00 0.00 39.03 4.75
534 537 1.832167 GCACCCACCAAAGGCAAGA 60.832 57.895 0.00 0.00 0.00 3.02
535 538 1.809567 GCACCCACCAAAGGCAAGAG 61.810 60.000 0.00 0.00 0.00 2.85
536 539 0.178992 CACCCACCAAAGGCAAGAGA 60.179 55.000 0.00 0.00 0.00 3.10
538 541 0.401738 CCCACCAAAGGCAAGAGAGA 59.598 55.000 0.00 0.00 0.00 3.10
540 543 2.157738 CCACCAAAGGCAAGAGAGAAG 58.842 52.381 0.00 0.00 0.00 2.85
542 545 2.057922 ACCAAAGGCAAGAGAGAAGGA 58.942 47.619 0.00 0.00 0.00 3.36
849 867 0.898320 TACTGCTCCTCCTTGTCTGC 59.102 55.000 0.00 0.00 0.00 4.26
850 868 1.447489 CTGCTCCTCCTTGTCTGCG 60.447 63.158 0.00 0.00 0.00 5.18
851 869 1.881903 CTGCTCCTCCTTGTCTGCGA 61.882 60.000 0.00 0.00 0.00 5.10
852 870 1.153667 GCTCCTCCTTGTCTGCGAG 60.154 63.158 0.00 0.00 0.00 5.03
856 874 1.080501 CTCCTTGTCTGCGAGCGAA 60.081 57.895 0.00 0.00 0.00 4.70
882 900 0.549950 TAGCACGGTAGGGAGTAGCT 59.450 55.000 0.00 0.00 34.84 3.32
883 901 0.752376 AGCACGGTAGGGAGTAGCTC 60.752 60.000 0.00 0.00 0.00 4.09
891 909 2.279408 GGAGTAGCTCCGGGGACT 59.721 66.667 4.80 0.00 41.08 3.85
892 910 2.128507 GGAGTAGCTCCGGGGACTG 61.129 68.421 4.80 0.00 41.08 3.51
893 911 1.380112 GAGTAGCTCCGGGGACTGT 60.380 63.158 4.80 0.00 0.00 3.55
936 962 1.221293 GCACAGAGCAGAGGAGCAT 59.779 57.895 0.00 0.00 44.79 3.79
1015 1041 3.771110 GAGATGGGGCAGCTCAGGC 62.771 68.421 0.00 0.00 44.99 4.85
1124 1150 0.529119 GACGTCGACAAGGTTGGTGT 60.529 55.000 17.16 1.18 0.00 4.16
1125 1151 0.529119 ACGTCGACAAGGTTGGTGTC 60.529 55.000 17.16 0.00 41.66 3.67
1161 1202 6.443849 TCCTCCTTTGTGTTCTTGTATAGGAT 59.556 38.462 0.00 0.00 30.73 3.24
1175 1256 7.779798 TCTTGTATAGGATCTTGGGAATTTTGG 59.220 37.037 0.00 0.00 0.00 3.28
1177 1258 7.060421 TGTATAGGATCTTGGGAATTTTGGTC 58.940 38.462 0.00 0.00 0.00 4.02
1185 1270 2.553172 TGGGAATTTTGGTCGGTTTACG 59.447 45.455 0.00 0.00 46.11 3.18
1193 1278 0.749049 GGTCGGTTTACGGAGCCTAT 59.251 55.000 8.03 0.00 44.45 2.57
1293 1408 5.308237 CCTGCCTATTTTGGGAGATAGTAGT 59.692 44.000 3.64 0.00 46.72 2.73
1321 1436 2.399356 GCGTTAGGCAGGCAGGTTC 61.399 63.158 0.00 0.00 42.87 3.62
1326 1441 1.492133 TAGGCAGGCAGGTTCAGCTT 61.492 55.000 0.00 0.00 0.00 3.74
1336 1451 3.285484 CAGGTTCAGCTTCCATTAGCAT 58.715 45.455 0.00 0.00 43.68 3.79
1337 1452 3.066342 CAGGTTCAGCTTCCATTAGCATG 59.934 47.826 0.00 0.00 43.68 4.06
1338 1453 3.019564 GGTTCAGCTTCCATTAGCATGT 58.980 45.455 0.00 0.00 43.68 3.21
1339 1454 3.445096 GGTTCAGCTTCCATTAGCATGTT 59.555 43.478 0.00 0.00 43.68 2.71
1359 1474 2.229792 TGAGAATTTCGCCTTTGCTGT 58.770 42.857 0.00 0.00 34.43 4.40
1364 1479 0.951558 TTTCGCCTTTGCTGTTCTCC 59.048 50.000 0.00 0.00 34.43 3.71
1366 1481 0.036732 TCGCCTTTGCTGTTCTCCAT 59.963 50.000 0.00 0.00 34.43 3.41
1383 1498 5.560724 TCTCCATTAGCAGCAGTTTTTAGT 58.439 37.500 0.00 0.00 0.00 2.24
1384 1499 6.707290 TCTCCATTAGCAGCAGTTTTTAGTA 58.293 36.000 0.00 0.00 0.00 1.82
1485 1601 1.729149 CGCGTGCTTCCAAGGATTTTC 60.729 52.381 0.00 0.00 0.00 2.29
1534 1650 3.508793 CCGTAACCTACTGGACTTCAGAA 59.491 47.826 0.00 0.00 46.18 3.02
1536 1652 4.217983 CGTAACCTACTGGACTTCAGAACT 59.782 45.833 0.00 0.00 46.18 3.01
1538 1654 4.608948 ACCTACTGGACTTCAGAACTTG 57.391 45.455 0.00 0.00 46.18 3.16
1583 1700 2.030363 TCACCCACTGCAAATTAAAGCG 60.030 45.455 0.00 0.00 0.00 4.68
1599 1716 1.009829 AGCGCCATAGCTTCTTTTCG 58.990 50.000 2.29 0.00 46.80 3.46
1600 1717 0.727398 GCGCCATAGCTTCTTTTCGT 59.273 50.000 0.00 0.00 36.60 3.85
1615 1732 8.496751 GCTTCTTTTCGTTAACAGATAAGAACT 58.503 33.333 24.17 0.00 39.19 3.01
1633 1751 9.736023 ATAAGAACTGAAACATGAACAAACTTC 57.264 29.630 0.00 0.00 0.00 3.01
1646 1764 7.425915 TGAACAAACTTCGTCAAATTTTACG 57.574 32.000 16.82 16.82 40.40 3.18
1653 1771 3.139850 TCGTCAAATTTTACGCTTGGGA 58.860 40.909 17.85 0.00 38.94 4.37
1674 1792 2.575461 GGGGAAAGCATGTGCAGC 59.425 61.111 7.83 0.00 45.16 5.25
1719 1837 1.597027 CCGTGGGTGCGAACTTCTT 60.597 57.895 0.00 0.00 0.00 2.52
1720 1838 1.566018 CCGTGGGTGCGAACTTCTTC 61.566 60.000 0.00 0.00 0.00 2.87
1721 1839 0.600255 CGTGGGTGCGAACTTCTTCT 60.600 55.000 0.00 0.00 0.00 2.85
1722 1840 1.336517 CGTGGGTGCGAACTTCTTCTA 60.337 52.381 0.00 0.00 0.00 2.10
1723 1841 2.762745 GTGGGTGCGAACTTCTTCTAA 58.237 47.619 0.00 0.00 0.00 2.10
1724 1842 3.335579 GTGGGTGCGAACTTCTTCTAAT 58.664 45.455 0.00 0.00 0.00 1.73
1725 1843 3.751698 GTGGGTGCGAACTTCTTCTAATT 59.248 43.478 0.00 0.00 0.00 1.40
1729 1847 5.048991 GGGTGCGAACTTCTTCTAATTCAAA 60.049 40.000 0.00 0.00 0.00 2.69
1731 1849 6.359883 GGTGCGAACTTCTTCTAATTCAAAAC 59.640 38.462 0.00 0.00 0.00 2.43
1734 1862 7.971168 TGCGAACTTCTTCTAATTCAAAACAAA 59.029 29.630 0.00 0.00 0.00 2.83
1747 1875 8.652810 AATTCAAAACAAAGAACTCATCAAGG 57.347 30.769 0.00 0.00 0.00 3.61
1784 1932 1.739562 GACCTTCAGCACAGAGGCG 60.740 63.158 0.00 0.00 39.27 5.52
1899 2050 2.357517 CGCTGCCAAGAACTCGGT 60.358 61.111 0.00 0.00 0.00 4.69
1900 2051 2.671177 CGCTGCCAAGAACTCGGTG 61.671 63.158 0.00 0.00 0.00 4.94
1912 2063 0.036952 ACTCGGTGGCAGATCAACAG 60.037 55.000 0.00 0.00 0.00 3.16
2143 2294 2.468831 CGCAAGAGCAAGAGTCTATCC 58.531 52.381 0.00 0.00 42.27 2.59
2294 2445 1.005340 GAAGCACATCAAGGAGCTCG 58.995 55.000 7.83 0.00 36.07 5.03
2295 2446 1.023513 AAGCACATCAAGGAGCTCGC 61.024 55.000 7.83 2.57 36.07 5.03
2338 2489 2.125326 CGATGCCCCGTCAGTAGGA 61.125 63.158 0.00 0.00 0.00 2.94
2341 2492 1.122019 ATGCCCCGTCAGTAGGATCC 61.122 60.000 2.48 2.48 0.00 3.36
2353 2504 1.691434 GTAGGATCCTCTGCTGAAGGG 59.309 57.143 20.22 0.00 0.00 3.95
2619 2776 4.561530 GCCACAGTCTCAGTGTCAATCTAA 60.562 45.833 0.00 0.00 35.24 2.10
2842 2999 1.680207 GAGAAGGATGATGGCAAAGGC 59.320 52.381 0.00 0.00 40.13 4.35
2912 3069 2.840651 AGCCACAGAGGTAACAATAGCT 59.159 45.455 0.00 0.00 42.41 3.32
3083 3240 9.523168 AGATAATTGTATACTACTCCCTCTGTC 57.477 37.037 4.17 0.00 0.00 3.51
3084 3241 6.980416 AATTGTATACTACTCCCTCTGTCC 57.020 41.667 4.17 0.00 0.00 4.02
3085 3242 4.450305 TGTATACTACTCCCTCTGTCCC 57.550 50.000 4.17 0.00 0.00 4.46
3086 3243 3.789840 TGTATACTACTCCCTCTGTCCCA 59.210 47.826 4.17 0.00 0.00 4.37
3087 3244 4.419200 TGTATACTACTCCCTCTGTCCCAT 59.581 45.833 4.17 0.00 0.00 4.00
3088 3245 5.613973 TGTATACTACTCCCTCTGTCCCATA 59.386 44.000 4.17 0.00 0.00 2.74
3089 3246 5.681494 ATACTACTCCCTCTGTCCCATAA 57.319 43.478 0.00 0.00 0.00 1.90
3090 3247 4.561254 ACTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
3091 3248 5.681494 ACTACTCCCTCTGTCCCATAATA 57.319 43.478 0.00 0.00 0.00 0.98
3092 3249 6.234404 ACTACTCCCTCTGTCCCATAATAT 57.766 41.667 0.00 0.00 0.00 1.28
3093 3250 7.358255 ACTACTCCCTCTGTCCCATAATATA 57.642 40.000 0.00 0.00 0.00 0.86
3094 3251 7.776745 ACTACTCCCTCTGTCCCATAATATAA 58.223 38.462 0.00 0.00 0.00 0.98
3095 3252 7.896496 ACTACTCCCTCTGTCCCATAATATAAG 59.104 40.741 0.00 0.00 0.00 1.73
3096 3253 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
3097 3254 6.957020 ACTCCCTCTGTCCCATAATATAAGAG 59.043 42.308 0.00 0.00 0.00 2.85
3098 3255 6.875469 TCCCTCTGTCCCATAATATAAGAGT 58.125 40.000 0.00 0.00 0.00 3.24
3099 3256 6.726299 TCCCTCTGTCCCATAATATAAGAGTG 59.274 42.308 0.00 0.00 0.00 3.51
3100 3257 6.498651 CCCTCTGTCCCATAATATAAGAGTGT 59.501 42.308 0.00 0.00 0.00 3.55
3101 3258 7.016661 CCCTCTGTCCCATAATATAAGAGTGTT 59.983 40.741 0.00 0.00 0.00 3.32
3102 3259 8.432805 CCTCTGTCCCATAATATAAGAGTGTTT 58.567 37.037 0.00 0.00 0.00 2.83
3103 3260 9.838339 CTCTGTCCCATAATATAAGAGTGTTTT 57.162 33.333 0.00 0.00 0.00 2.43
3128 3285 7.919313 TTAGACTAGTGTACTGTCAAAAACG 57.081 36.000 0.00 0.00 33.56 3.60
3129 3286 5.899299 AGACTAGTGTACTGTCAAAAACGT 58.101 37.500 0.00 0.00 33.56 3.99
3130 3287 6.335777 AGACTAGTGTACTGTCAAAAACGTT 58.664 36.000 0.00 0.00 33.56 3.99
3131 3288 6.474751 AGACTAGTGTACTGTCAAAAACGTTC 59.525 38.462 0.00 0.00 33.56 3.95
3132 3289 6.335777 ACTAGTGTACTGTCAAAAACGTTCT 58.664 36.000 0.00 0.00 0.00 3.01
3133 3290 6.815142 ACTAGTGTACTGTCAAAAACGTTCTT 59.185 34.615 0.00 0.00 0.00 2.52
3134 3291 7.975616 ACTAGTGTACTGTCAAAAACGTTCTTA 59.024 33.333 0.00 0.00 0.00 2.10
3135 3292 7.781548 AGTGTACTGTCAAAAACGTTCTTAT 57.218 32.000 0.00 0.00 0.00 1.73
3136 3293 8.876275 AGTGTACTGTCAAAAACGTTCTTATA 57.124 30.769 0.00 0.00 0.00 0.98
3137 3294 9.485206 AGTGTACTGTCAAAAACGTTCTTATAT 57.515 29.630 0.00 0.00 0.00 0.86
3143 3300 9.716507 CTGTCAAAAACGTTCTTATATTATGGG 57.283 33.333 0.00 0.00 0.00 4.00
3144 3301 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
3145 3302 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
3146 3303 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
3147 3304 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
3148 3305 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
3149 3306 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
3150 3307 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
3151 3308 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
3152 3309 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
3153 3310 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3409 3570 2.821969 ACTGCATCCTTGGAAATGTGAC 59.178 45.455 0.00 0.00 0.00 3.67
3449 3610 6.071952 TCCAGCTTGTTTCCATTTGTCTATTC 60.072 38.462 0.00 0.00 0.00 1.75
3537 3700 9.423061 CTCCTTTCTTTTTCTTTGTTTTCTCAA 57.577 29.630 0.00 0.00 0.00 3.02
3712 3875 5.195001 TGTCCTGCATAAAGAAAACCAAC 57.805 39.130 0.00 0.00 0.00 3.77
3732 3895 6.040842 ACCAACAAGTAAAGATGAGCACAAAT 59.959 34.615 0.00 0.00 0.00 2.32
3772 3935 5.422145 TGCATGGTCTCATATGAATATCGG 58.578 41.667 6.90 0.00 31.33 4.18
3807 3970 7.613411 TCATCGTCATATGAATATCTCAGAGGT 59.387 37.037 7.07 0.00 37.52 3.85
3827 3990 6.493802 AGAGGTGTACTTCAGTAGATCAACAA 59.506 38.462 0.00 0.00 28.29 2.83
3840 4003 9.926751 CAGTAGATCAACAATTTATCATGTGAC 57.073 33.333 0.00 0.00 0.00 3.67
3866 4029 3.883830 AGTAACATCAGGAGCTGACAG 57.116 47.619 0.00 0.00 43.63 3.51
3896 4059 2.929641 TGTCTGAAAGTTGTGCCATCA 58.070 42.857 0.00 0.00 33.76 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 78 1.672881 GCTCTGCAATATGCTCCGTTT 59.327 47.619 3.78 0.00 45.31 3.60
77 79 1.303309 GCTCTGCAATATGCTCCGTT 58.697 50.000 3.78 0.00 45.31 4.44
78 80 0.178767 TGCTCTGCAATATGCTCCGT 59.821 50.000 3.78 0.00 45.31 4.69
79 81 1.520494 ATGCTCTGCAATATGCTCCG 58.480 50.000 3.78 0.00 45.31 4.63
80 82 2.419324 GCTATGCTCTGCAATATGCTCC 59.581 50.000 3.78 0.00 45.31 4.70
81 83 2.093941 CGCTATGCTCTGCAATATGCTC 59.906 50.000 3.78 0.00 45.31 4.26
82 84 2.074576 CGCTATGCTCTGCAATATGCT 58.925 47.619 3.78 0.00 45.31 3.79
83 85 2.071540 TCGCTATGCTCTGCAATATGC 58.928 47.619 0.00 0.00 43.62 3.14
84 86 3.120408 GGTTCGCTATGCTCTGCAATATG 60.120 47.826 0.00 0.00 43.62 1.78
85 87 3.070018 GGTTCGCTATGCTCTGCAATAT 58.930 45.455 0.00 0.00 43.62 1.28
86 88 2.158971 TGGTTCGCTATGCTCTGCAATA 60.159 45.455 0.00 0.00 43.62 1.90
87 89 1.303309 GGTTCGCTATGCTCTGCAAT 58.697 50.000 0.00 0.00 43.62 3.56
88 90 0.036483 TGGTTCGCTATGCTCTGCAA 60.036 50.000 0.00 0.00 43.62 4.08
89 91 0.036483 TTGGTTCGCTATGCTCTGCA 60.036 50.000 0.00 0.00 44.86 4.41
90 92 0.375106 GTTGGTTCGCTATGCTCTGC 59.625 55.000 0.00 0.00 0.00 4.26
91 93 1.009829 GGTTGGTTCGCTATGCTCTG 58.990 55.000 0.00 0.00 0.00 3.35
92 94 0.905357 AGGTTGGTTCGCTATGCTCT 59.095 50.000 0.00 0.00 0.00 4.09
93 95 1.009829 CAGGTTGGTTCGCTATGCTC 58.990 55.000 0.00 0.00 0.00 4.26
94 96 0.324943 ACAGGTTGGTTCGCTATGCT 59.675 50.000 0.00 0.00 0.00 3.79
95 97 0.447801 CACAGGTTGGTTCGCTATGC 59.552 55.000 0.00 0.00 0.00 3.14
96 98 1.086696 CCACAGGTTGGTTCGCTATG 58.913 55.000 0.00 0.00 41.10 2.23
97 99 3.551259 CCACAGGTTGGTTCGCTAT 57.449 52.632 0.00 0.00 41.10 2.97
108 110 1.271926 GCTAACCATCCAACCACAGGT 60.272 52.381 0.00 0.00 37.65 4.00
109 111 1.004745 AGCTAACCATCCAACCACAGG 59.995 52.381 0.00 0.00 0.00 4.00
110 112 2.086869 CAGCTAACCATCCAACCACAG 58.913 52.381 0.00 0.00 0.00 3.66
111 113 1.271871 CCAGCTAACCATCCAACCACA 60.272 52.381 0.00 0.00 0.00 4.17
112 114 1.271926 ACCAGCTAACCATCCAACCAC 60.272 52.381 0.00 0.00 0.00 4.16
113 115 1.072266 ACCAGCTAACCATCCAACCA 58.928 50.000 0.00 0.00 0.00 3.67
114 116 3.477530 GATACCAGCTAACCATCCAACC 58.522 50.000 0.00 0.00 0.00 3.77
115 117 3.477530 GGATACCAGCTAACCATCCAAC 58.522 50.000 9.71 0.00 36.09 3.77
116 118 3.857157 GGATACCAGCTAACCATCCAA 57.143 47.619 9.71 0.00 36.09 3.53
131 133 1.692749 TCTGGTGGGCTGGGGATAC 60.693 63.158 0.00 0.00 0.00 2.24
132 134 1.384502 CTCTGGTGGGCTGGGGATA 60.385 63.158 0.00 0.00 0.00 2.59
133 135 2.693864 CTCTGGTGGGCTGGGGAT 60.694 66.667 0.00 0.00 0.00 3.85
134 136 3.810687 AACTCTGGTGGGCTGGGGA 62.811 63.158 0.00 0.00 0.00 4.81
135 137 3.260100 AACTCTGGTGGGCTGGGG 61.260 66.667 0.00 0.00 0.00 4.96
136 138 2.067932 TTGAACTCTGGTGGGCTGGG 62.068 60.000 0.00 0.00 0.00 4.45
137 139 0.178992 TTTGAACTCTGGTGGGCTGG 60.179 55.000 0.00 0.00 0.00 4.85
138 140 1.815003 GATTTGAACTCTGGTGGGCTG 59.185 52.381 0.00 0.00 0.00 4.85
139 141 1.272147 GGATTTGAACTCTGGTGGGCT 60.272 52.381 0.00 0.00 0.00 5.19
140 142 1.177401 GGATTTGAACTCTGGTGGGC 58.823 55.000 0.00 0.00 0.00 5.36
141 143 2.440409 CAGGATTTGAACTCTGGTGGG 58.560 52.381 0.00 0.00 0.00 4.61
142 144 2.440409 CCAGGATTTGAACTCTGGTGG 58.560 52.381 0.00 0.00 41.21 4.61
146 148 2.746362 GAGCACCAGGATTTGAACTCTG 59.254 50.000 0.00 0.00 0.00 3.35
147 149 2.373169 TGAGCACCAGGATTTGAACTCT 59.627 45.455 0.00 0.00 0.00 3.24
148 150 2.485814 GTGAGCACCAGGATTTGAACTC 59.514 50.000 0.00 0.00 0.00 3.01
149 151 2.158623 TGTGAGCACCAGGATTTGAACT 60.159 45.455 0.00 0.00 0.00 3.01
150 152 2.229792 TGTGAGCACCAGGATTTGAAC 58.770 47.619 0.00 0.00 0.00 3.18
151 153 2.655090 TGTGAGCACCAGGATTTGAA 57.345 45.000 0.00 0.00 0.00 2.69
152 154 2.885135 ATGTGAGCACCAGGATTTGA 57.115 45.000 0.00 0.00 0.00 2.69
153 155 3.947910 AAATGTGAGCACCAGGATTTG 57.052 42.857 0.00 0.00 0.00 2.32
154 156 4.646492 GGATAAATGTGAGCACCAGGATTT 59.354 41.667 0.00 0.94 0.00 2.17
155 157 4.079558 AGGATAAATGTGAGCACCAGGATT 60.080 41.667 0.00 0.00 0.00 3.01
156 158 3.461085 AGGATAAATGTGAGCACCAGGAT 59.539 43.478 0.00 0.00 0.00 3.24
157 159 2.846206 AGGATAAATGTGAGCACCAGGA 59.154 45.455 0.00 0.00 0.00 3.86
158 160 2.947652 CAGGATAAATGTGAGCACCAGG 59.052 50.000 0.00 0.00 0.00 4.45
159 161 2.357009 GCAGGATAAATGTGAGCACCAG 59.643 50.000 0.00 0.00 0.00 4.00
160 162 2.290832 TGCAGGATAAATGTGAGCACCA 60.291 45.455 0.00 0.00 0.00 4.17
161 163 2.368439 TGCAGGATAAATGTGAGCACC 58.632 47.619 0.00 0.00 0.00 5.01
162 164 4.644103 AATGCAGGATAAATGTGAGCAC 57.356 40.909 0.00 0.00 32.92 4.40
163 165 6.964807 ATAAATGCAGGATAAATGTGAGCA 57.035 33.333 0.00 0.00 34.78 4.26
164 166 8.652810 AAAATAAATGCAGGATAAATGTGAGC 57.347 30.769 0.00 0.00 0.00 4.26
174 176 9.108284 CCGGAAATTTTAAAATAAATGCAGGAT 57.892 29.630 13.68 0.00 0.00 3.24
175 177 7.065204 GCCGGAAATTTTAAAATAAATGCAGGA 59.935 33.333 13.68 0.00 0.00 3.86
176 178 7.186128 GCCGGAAATTTTAAAATAAATGCAGG 58.814 34.615 13.68 8.49 0.00 4.85
177 179 6.899243 CGCCGGAAATTTTAAAATAAATGCAG 59.101 34.615 13.68 3.53 0.00 4.41
178 180 6.590292 TCGCCGGAAATTTTAAAATAAATGCA 59.410 30.769 13.68 0.00 0.00 3.96
179 181 6.994992 TCGCCGGAAATTTTAAAATAAATGC 58.005 32.000 13.68 11.52 0.00 3.56
180 182 7.582319 GCATCGCCGGAAATTTTAAAATAAATG 59.418 33.333 13.68 9.43 0.00 2.32
181 183 7.278868 TGCATCGCCGGAAATTTTAAAATAAAT 59.721 29.630 13.68 4.01 0.00 1.40
182 184 6.590292 TGCATCGCCGGAAATTTTAAAATAAA 59.410 30.769 13.68 0.00 0.00 1.40
183 185 6.035112 GTGCATCGCCGGAAATTTTAAAATAA 59.965 34.615 13.68 0.00 0.00 1.40
184 186 5.517054 GTGCATCGCCGGAAATTTTAAAATA 59.483 36.000 13.68 0.00 0.00 1.40
185 187 4.328712 GTGCATCGCCGGAAATTTTAAAAT 59.671 37.500 5.05 7.64 0.00 1.82
186 188 3.675698 GTGCATCGCCGGAAATTTTAAAA 59.324 39.130 5.05 2.51 0.00 1.52
187 189 3.246619 GTGCATCGCCGGAAATTTTAAA 58.753 40.909 5.05 0.00 0.00 1.52
188 190 2.416162 GGTGCATCGCCGGAAATTTTAA 60.416 45.455 5.05 0.00 0.00 1.52
189 191 1.133407 GGTGCATCGCCGGAAATTTTA 59.867 47.619 5.05 0.00 0.00 1.52
190 192 0.108851 GGTGCATCGCCGGAAATTTT 60.109 50.000 5.05 0.00 0.00 1.82
191 193 0.965363 AGGTGCATCGCCGGAAATTT 60.965 50.000 5.05 0.00 39.30 1.82
192 194 0.965363 AAGGTGCATCGCCGGAAATT 60.965 50.000 5.05 0.00 39.30 1.82
193 195 1.376609 GAAGGTGCATCGCCGGAAAT 61.377 55.000 5.05 0.00 39.30 2.17
194 196 2.033448 AAGGTGCATCGCCGGAAA 59.967 55.556 5.05 0.00 39.30 3.13
195 197 2.435938 GAAGGTGCATCGCCGGAA 60.436 61.111 5.05 0.00 39.30 4.30
196 198 3.664025 CTGAAGGTGCATCGCCGGA 62.664 63.158 5.05 0.00 39.30 5.14
197 199 3.197790 CTGAAGGTGCATCGCCGG 61.198 66.667 0.00 0.00 39.30 6.13
198 200 2.434884 ACTGAAGGTGCATCGCCG 60.435 61.111 0.00 0.00 39.30 6.46
199 201 2.401766 CCACTGAAGGTGCATCGCC 61.402 63.158 0.00 0.00 44.08 5.54
200 202 0.955428 TTCCACTGAAGGTGCATCGC 60.955 55.000 0.00 0.00 44.08 4.58
201 203 1.466167 CTTTCCACTGAAGGTGCATCG 59.534 52.381 0.00 0.00 44.08 3.84
202 204 2.746362 CTCTTTCCACTGAAGGTGCATC 59.254 50.000 0.00 0.00 44.08 3.91
203 205 2.373169 TCTCTTTCCACTGAAGGTGCAT 59.627 45.455 0.00 0.00 44.08 3.96
204 206 1.768275 TCTCTTTCCACTGAAGGTGCA 59.232 47.619 0.00 0.00 44.08 4.57
205 207 2.147150 GTCTCTTTCCACTGAAGGTGC 58.853 52.381 0.00 0.00 44.08 5.01
206 208 2.224066 ACGTCTCTTTCCACTGAAGGTG 60.224 50.000 0.00 0.00 44.96 4.00
207 209 2.040178 ACGTCTCTTTCCACTGAAGGT 58.960 47.619 0.00 0.00 0.00 3.50
208 210 2.821991 ACGTCTCTTTCCACTGAAGG 57.178 50.000 0.00 0.00 0.00 3.46
209 211 3.060602 GGAACGTCTCTTTCCACTGAAG 58.939 50.000 0.00 0.00 42.04 3.02
210 212 2.224209 GGGAACGTCTCTTTCCACTGAA 60.224 50.000 5.63 0.00 43.96 3.02
211 213 1.343465 GGGAACGTCTCTTTCCACTGA 59.657 52.381 5.63 0.00 43.96 3.41
212 214 1.797025 GGGAACGTCTCTTTCCACTG 58.203 55.000 5.63 0.00 43.96 3.66
232 234 1.505477 ATAGCCGCCTCGTAGTCGAC 61.505 60.000 7.70 7.70 41.35 4.20
233 235 1.227764 ATAGCCGCCTCGTAGTCGA 60.228 57.895 0.00 0.00 44.12 4.20
234 236 1.082038 CATAGCCGCCTCGTAGTCG 60.082 63.158 0.00 0.00 38.55 4.18
235 237 1.286260 CCATAGCCGCCTCGTAGTC 59.714 63.158 0.00 0.00 0.00 2.59
236 238 1.455217 ACCATAGCCGCCTCGTAGT 60.455 57.895 0.00 0.00 0.00 2.73
237 239 1.007271 CACCATAGCCGCCTCGTAG 60.007 63.158 0.00 0.00 0.00 3.51
238 240 1.454295 TCACCATAGCCGCCTCGTA 60.454 57.895 0.00 0.00 0.00 3.43
239 241 2.758327 TCACCATAGCCGCCTCGT 60.758 61.111 0.00 0.00 0.00 4.18
240 242 2.279517 GTCACCATAGCCGCCTCG 60.280 66.667 0.00 0.00 0.00 4.63
241 243 0.530870 GAAGTCACCATAGCCGCCTC 60.531 60.000 0.00 0.00 0.00 4.70
242 244 1.522569 GAAGTCACCATAGCCGCCT 59.477 57.895 0.00 0.00 0.00 5.52
243 245 1.883084 CGAAGTCACCATAGCCGCC 60.883 63.158 0.00 0.00 0.00 6.13
244 246 0.101759 TACGAAGTCACCATAGCCGC 59.898 55.000 0.00 0.00 43.93 6.53
245 247 2.572191 TTACGAAGTCACCATAGCCG 57.428 50.000 0.00 0.00 43.93 5.52
246 248 5.116882 AGATTTTACGAAGTCACCATAGCC 58.883 41.667 0.00 0.00 43.93 3.93
247 249 5.810587 TGAGATTTTACGAAGTCACCATAGC 59.189 40.000 0.00 0.00 43.93 2.97
248 250 7.759886 TCTTGAGATTTTACGAAGTCACCATAG 59.240 37.037 0.00 0.00 43.93 2.23
249 251 7.608153 TCTTGAGATTTTACGAAGTCACCATA 58.392 34.615 0.00 0.00 43.93 2.74
250 252 6.464222 TCTTGAGATTTTACGAAGTCACCAT 58.536 36.000 0.00 0.00 43.93 3.55
251 253 5.849510 TCTTGAGATTTTACGAAGTCACCA 58.150 37.500 0.00 0.00 43.93 4.17
252 254 6.590292 TCATCTTGAGATTTTACGAAGTCACC 59.410 38.462 0.00 0.00 35.39 4.02
253 255 7.582435 TCATCTTGAGATTTTACGAAGTCAC 57.418 36.000 0.00 0.00 35.39 3.67
256 258 8.768955 GCATATCATCTTGAGATTTTACGAAGT 58.231 33.333 0.00 0.00 37.29 3.01
257 259 8.226448 GGCATATCATCTTGAGATTTTACGAAG 58.774 37.037 0.00 0.00 31.21 3.79
258 260 7.095649 CGGCATATCATCTTGAGATTTTACGAA 60.096 37.037 0.00 0.00 31.21 3.85
259 261 6.366061 CGGCATATCATCTTGAGATTTTACGA 59.634 38.462 0.00 0.00 31.21 3.43
260 262 6.401474 CCGGCATATCATCTTGAGATTTTACG 60.401 42.308 0.00 0.00 31.21 3.18
261 263 6.621596 GCCGGCATATCATCTTGAGATTTTAC 60.622 42.308 24.80 0.00 31.21 2.01
262 264 5.412594 GCCGGCATATCATCTTGAGATTTTA 59.587 40.000 24.80 0.00 31.21 1.52
263 265 4.217118 GCCGGCATATCATCTTGAGATTTT 59.783 41.667 24.80 0.00 31.21 1.82
264 266 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
265 267 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
266 268 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
267 269 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
268 270 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
269 271 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
270 272 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
271 273 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
272 274 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
273 275 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
274 276 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
275 277 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
276 278 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
277 279 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
278 280 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
279 281 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
280 282 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
281 283 2.606155 CTTCGAGAGACTGAGCCGGC 62.606 65.000 21.89 21.89 41.84 6.13
282 284 1.431440 CTTCGAGAGACTGAGCCGG 59.569 63.158 0.00 0.00 41.84 6.13
283 285 1.309499 ACCTTCGAGAGACTGAGCCG 61.309 60.000 0.00 0.00 41.84 5.52
284 286 0.172352 CACCTTCGAGAGACTGAGCC 59.828 60.000 0.00 0.00 41.84 4.70
285 287 0.457681 GCACCTTCGAGAGACTGAGC 60.458 60.000 0.00 0.00 41.84 4.26
286 288 1.173043 AGCACCTTCGAGAGACTGAG 58.827 55.000 0.00 0.00 41.84 3.35
287 289 1.621992 AAGCACCTTCGAGAGACTGA 58.378 50.000 0.00 0.00 41.84 3.41
288 290 3.791973 ATAAGCACCTTCGAGAGACTG 57.208 47.619 0.00 0.00 41.84 3.51
289 291 3.886505 CCTATAAGCACCTTCGAGAGACT 59.113 47.826 0.00 0.00 41.84 3.24
290 292 3.004944 CCCTATAAGCACCTTCGAGAGAC 59.995 52.174 0.00 0.00 41.84 3.36
291 293 3.223435 CCCTATAAGCACCTTCGAGAGA 58.777 50.000 0.00 0.00 39.20 3.10
292 294 2.297597 CCCCTATAAGCACCTTCGAGAG 59.702 54.545 0.00 0.00 0.00 3.20
293 295 2.317040 CCCCTATAAGCACCTTCGAGA 58.683 52.381 0.00 0.00 0.00 4.04
294 296 2.040178 ACCCCTATAAGCACCTTCGAG 58.960 52.381 0.00 0.00 0.00 4.04
295 297 2.170012 ACCCCTATAAGCACCTTCGA 57.830 50.000 0.00 0.00 0.00 3.71
296 298 2.299297 CCTACCCCTATAAGCACCTTCG 59.701 54.545 0.00 0.00 0.00 3.79
297 299 3.584294 TCCTACCCCTATAAGCACCTTC 58.416 50.000 0.00 0.00 0.00 3.46
298 300 3.719368 TCCTACCCCTATAAGCACCTT 57.281 47.619 0.00 0.00 0.00 3.50
299 301 3.116317 ACATCCTACCCCTATAAGCACCT 60.116 47.826 0.00 0.00 0.00 4.00
300 302 3.008049 CACATCCTACCCCTATAAGCACC 59.992 52.174 0.00 0.00 0.00 5.01
301 303 3.557264 GCACATCCTACCCCTATAAGCAC 60.557 52.174 0.00 0.00 0.00 4.40
302 304 2.637872 GCACATCCTACCCCTATAAGCA 59.362 50.000 0.00 0.00 0.00 3.91
303 305 2.637872 TGCACATCCTACCCCTATAAGC 59.362 50.000 0.00 0.00 0.00 3.09
304 306 4.287067 ACATGCACATCCTACCCCTATAAG 59.713 45.833 0.00 0.00 0.00 1.73
305 307 4.239495 ACATGCACATCCTACCCCTATAA 58.761 43.478 0.00 0.00 0.00 0.98
306 308 3.869310 ACATGCACATCCTACCCCTATA 58.131 45.455 0.00 0.00 0.00 1.31
307 309 2.706350 ACATGCACATCCTACCCCTAT 58.294 47.619 0.00 0.00 0.00 2.57
308 310 2.190398 ACATGCACATCCTACCCCTA 57.810 50.000 0.00 0.00 0.00 3.53
309 311 1.212935 GAACATGCACATCCTACCCCT 59.787 52.381 0.00 0.00 0.00 4.79
310 312 1.680338 GAACATGCACATCCTACCCC 58.320 55.000 0.00 0.00 0.00 4.95
311 313 1.299541 CGAACATGCACATCCTACCC 58.700 55.000 0.00 0.00 0.00 3.69
312 314 0.657840 GCGAACATGCACATCCTACC 59.342 55.000 0.00 0.00 34.15 3.18
313 315 0.301687 CGCGAACATGCACATCCTAC 59.698 55.000 0.00 0.00 34.15 3.18
314 316 0.108377 ACGCGAACATGCACATCCTA 60.108 50.000 15.93 0.00 34.15 2.94
315 317 0.955428 AACGCGAACATGCACATCCT 60.955 50.000 15.93 0.00 34.15 3.24
316 318 0.521242 GAACGCGAACATGCACATCC 60.521 55.000 15.93 0.00 34.15 3.51
317 319 0.165727 TGAACGCGAACATGCACATC 59.834 50.000 15.93 0.00 34.15 3.06
318 320 0.110238 GTGAACGCGAACATGCACAT 60.110 50.000 15.93 0.00 34.15 3.21
319 321 1.278337 GTGAACGCGAACATGCACA 59.722 52.632 15.93 0.00 34.15 4.57
320 322 0.722469 CTGTGAACGCGAACATGCAC 60.722 55.000 15.93 5.74 34.15 4.57
321 323 1.569003 CTGTGAACGCGAACATGCA 59.431 52.632 15.93 6.76 34.15 3.96
322 324 1.154413 CCTGTGAACGCGAACATGC 60.154 57.895 15.93 2.13 0.00 4.06
323 325 1.497278 CCCTGTGAACGCGAACATG 59.503 57.895 15.93 11.00 0.00 3.21
324 326 1.671054 CCCCTGTGAACGCGAACAT 60.671 57.895 15.93 0.00 0.00 2.71
325 327 2.280524 CCCCTGTGAACGCGAACA 60.281 61.111 15.93 13.41 0.00 3.18
326 328 3.723348 GCCCCTGTGAACGCGAAC 61.723 66.667 15.93 8.88 0.00 3.95
330 332 4.681978 ACTCGCCCCTGTGAACGC 62.682 66.667 0.00 0.00 0.00 4.84
331 333 2.149803 TACACTCGCCCCTGTGAACG 62.150 60.000 0.00 0.00 37.59 3.95
332 334 0.249398 ATACACTCGCCCCTGTGAAC 59.751 55.000 0.00 0.00 37.59 3.18
333 335 0.249120 CATACACTCGCCCCTGTGAA 59.751 55.000 0.00 0.00 37.59 3.18
334 336 1.897423 CATACACTCGCCCCTGTGA 59.103 57.895 0.00 0.00 37.59 3.58
335 337 1.815421 GCATACACTCGCCCCTGTG 60.815 63.158 0.00 0.00 39.80 3.66
336 338 2.584608 GCATACACTCGCCCCTGT 59.415 61.111 0.00 0.00 0.00 4.00
337 339 2.586079 CGCATACACTCGCCCCTG 60.586 66.667 0.00 0.00 0.00 4.45
338 340 4.530857 GCGCATACACTCGCCCCT 62.531 66.667 0.30 0.00 45.01 4.79
342 344 1.206745 ATGTACGCGCATACACTCGC 61.207 55.000 19.62 0.00 46.98 5.03
343 345 1.707117 GTATGTACGCGCATACACTCG 59.293 52.381 19.62 0.00 46.22 4.18
348 350 1.136992 CGCTTGTATGTACGCGCATAC 60.137 52.381 22.37 22.37 46.79 2.39
349 351 1.125270 CGCTTGTATGTACGCGCATA 58.875 50.000 5.73 3.87 39.11 3.14
350 352 1.487452 CCGCTTGTATGTACGCGCAT 61.487 55.000 5.73 5.05 43.84 4.73
351 353 2.162120 CCGCTTGTATGTACGCGCA 61.162 57.895 5.73 0.00 43.84 6.09
352 354 1.689352 AACCGCTTGTATGTACGCGC 61.689 55.000 5.73 0.00 43.84 6.86
353 355 0.024491 CAACCGCTTGTATGTACGCG 59.976 55.000 3.53 3.53 44.69 6.01
354 356 0.247537 GCAACCGCTTGTATGTACGC 60.248 55.000 0.00 0.00 34.30 4.42
355 357 0.024491 CGCAACCGCTTGTATGTACG 59.976 55.000 0.00 0.00 35.30 3.67
356 358 1.060122 GACGCAACCGCTTGTATGTAC 59.940 52.381 0.00 0.00 38.22 2.90
357 359 1.067425 AGACGCAACCGCTTGTATGTA 60.067 47.619 0.00 0.00 38.22 2.29
358 360 0.320421 AGACGCAACCGCTTGTATGT 60.320 50.000 0.00 0.00 38.22 2.29
359 361 0.095245 CAGACGCAACCGCTTGTATG 59.905 55.000 0.00 0.00 38.22 2.39
360 362 0.320421 ACAGACGCAACCGCTTGTAT 60.320 50.000 0.00 0.00 38.22 2.29
361 363 0.314618 TACAGACGCAACCGCTTGTA 59.685 50.000 0.00 0.00 36.30 2.41
362 364 1.068417 TACAGACGCAACCGCTTGT 59.932 52.632 0.00 0.00 37.80 3.16
363 365 0.944311 AGTACAGACGCAACCGCTTG 60.944 55.000 0.00 0.00 38.22 4.01
364 366 0.944311 CAGTACAGACGCAACCGCTT 60.944 55.000 0.00 0.00 38.22 4.68
365 367 1.372997 CAGTACAGACGCAACCGCT 60.373 57.895 0.00 0.00 38.22 5.52
366 368 1.663702 ACAGTACAGACGCAACCGC 60.664 57.895 0.00 0.00 38.22 5.68
367 369 0.596600 ACACAGTACAGACGCAACCG 60.597 55.000 0.00 0.00 41.14 4.44
368 370 1.578583 AACACAGTACAGACGCAACC 58.421 50.000 0.00 0.00 0.00 3.77
369 371 4.782252 TTAAACACAGTACAGACGCAAC 57.218 40.909 0.00 0.00 0.00 4.17
370 372 5.110598 TCTTTAAACACAGTACAGACGCAA 58.889 37.500 0.00 0.00 0.00 4.85
371 373 4.684877 TCTTTAAACACAGTACAGACGCA 58.315 39.130 0.00 0.00 0.00 5.24
372 374 5.646467 TTCTTTAAACACAGTACAGACGC 57.354 39.130 0.00 0.00 0.00 5.19
396 398 6.694447 TCTACAGTATGCTCCGTTAGTTTTT 58.306 36.000 0.00 0.00 42.53 1.94
397 399 6.276832 TCTACAGTATGCTCCGTTAGTTTT 57.723 37.500 0.00 0.00 42.53 2.43
398 400 5.909621 TCTACAGTATGCTCCGTTAGTTT 57.090 39.130 0.00 0.00 42.53 2.66
399 401 5.909621 TTCTACAGTATGCTCCGTTAGTT 57.090 39.130 0.00 0.00 42.53 2.24
400 402 5.909621 TTTCTACAGTATGCTCCGTTAGT 57.090 39.130 0.00 0.00 42.53 2.24
401 403 6.292381 GCAATTTCTACAGTATGCTCCGTTAG 60.292 42.308 0.00 0.00 42.53 2.34
402 404 5.522460 GCAATTTCTACAGTATGCTCCGTTA 59.478 40.000 0.00 0.00 42.53 3.18
411 413 4.600012 GCGTGTGCAATTTCTACAGTAT 57.400 40.909 0.00 0.00 42.15 2.12
515 518 2.042537 TTGCCTTTGGTGGGTGCA 60.043 55.556 0.00 0.00 0.00 4.57
516 519 1.809567 CTCTTGCCTTTGGTGGGTGC 61.810 60.000 0.00 0.00 0.00 5.01
517 520 0.178992 TCTCTTGCCTTTGGTGGGTG 60.179 55.000 0.00 0.00 0.00 4.61
518 521 0.111253 CTCTCTTGCCTTTGGTGGGT 59.889 55.000 0.00 0.00 0.00 4.51
519 522 0.401738 TCTCTCTTGCCTTTGGTGGG 59.598 55.000 0.00 0.00 0.00 4.61
523 526 2.867109 TCCTTCTCTCTTGCCTTTGG 57.133 50.000 0.00 0.00 0.00 3.28
524 527 5.163519 TGTTTTTCCTTCTCTCTTGCCTTTG 60.164 40.000 0.00 0.00 0.00 2.77
525 528 4.956075 TGTTTTTCCTTCTCTCTTGCCTTT 59.044 37.500 0.00 0.00 0.00 3.11
526 529 4.536765 TGTTTTTCCTTCTCTCTTGCCTT 58.463 39.130 0.00 0.00 0.00 4.35
529 532 6.099341 TGTTTTGTTTTTCCTTCTCTCTTGC 58.901 36.000 0.00 0.00 0.00 4.01
531 534 7.814587 CACTTGTTTTGTTTTTCCTTCTCTCTT 59.185 33.333 0.00 0.00 0.00 2.85
534 537 7.227049 TCACTTGTTTTGTTTTTCCTTCTCT 57.773 32.000 0.00 0.00 0.00 3.10
535 538 7.883229 TTCACTTGTTTTGTTTTTCCTTCTC 57.117 32.000 0.00 0.00 0.00 2.87
536 539 7.877612 ACATTCACTTGTTTTGTTTTTCCTTCT 59.122 29.630 0.00 0.00 0.00 2.85
538 541 7.572910 GCACATTCACTTGTTTTGTTTTTCCTT 60.573 33.333 0.00 0.00 0.00 3.36
540 543 6.020984 GCACATTCACTTGTTTTGTTTTTCC 58.979 36.000 0.00 0.00 0.00 3.13
542 545 6.551385 TGCACATTCACTTGTTTTGTTTTT 57.449 29.167 0.00 0.00 0.00 1.94
849 867 3.305773 GCTACGCTCGTTCGCTCG 61.306 66.667 0.00 4.97 0.00 5.03
850 868 2.202440 TGCTACGCTCGTTCGCTC 60.202 61.111 0.00 0.00 0.00 5.03
851 869 2.504244 GTGCTACGCTCGTTCGCT 60.504 61.111 0.00 0.00 0.00 4.93
852 870 3.887327 CGTGCTACGCTCGTTCGC 61.887 66.667 0.00 4.98 40.03 4.70
856 874 2.758089 CCTACCGTGCTACGCTCGT 61.758 63.158 9.05 0.00 42.71 4.18
882 900 4.974438 AGGCCAACAGTCCCCGGA 62.974 66.667 5.01 0.00 0.00 5.14
883 901 4.722700 CAGGCCAACAGTCCCCGG 62.723 72.222 5.01 0.00 0.00 5.73
885 903 3.569200 GACCAGGCCAACAGTCCCC 62.569 68.421 5.01 0.00 0.00 4.81
887 905 2.034221 GGACCAGGCCAACAGTCC 59.966 66.667 15.15 15.15 41.87 3.85
888 906 0.890996 CTTGGACCAGGCCAACAGTC 60.891 60.000 5.01 5.68 42.75 3.51
889 907 1.151450 CTTGGACCAGGCCAACAGT 59.849 57.895 5.01 0.00 42.75 3.55
890 908 0.178992 TTCTTGGACCAGGCCAACAG 60.179 55.000 5.01 0.00 42.75 3.16
891 909 0.260230 TTTCTTGGACCAGGCCAACA 59.740 50.000 5.01 0.00 42.75 3.33
892 910 1.408969 TTTTCTTGGACCAGGCCAAC 58.591 50.000 5.01 0.00 42.75 3.77
893 911 2.166907 TTTTTCTTGGACCAGGCCAA 57.833 45.000 5.01 4.56 45.28 4.52
936 962 1.825474 CTTTCCTTCCTCGAGGCTGTA 59.175 52.381 27.39 6.53 36.71 2.74
1095 1121 4.394078 TCGACGTCTCCCGCGTTG 62.394 66.667 14.70 0.00 43.04 4.10
1096 1122 4.395583 GTCGACGTCTCCCGCGTT 62.396 66.667 14.70 0.00 43.04 4.84
1098 1124 4.394078 TTGTCGACGTCTCCCGCG 62.394 66.667 14.70 0.00 41.42 6.46
1099 1125 2.504244 CTTGTCGACGTCTCCCGC 60.504 66.667 14.70 0.00 41.42 6.13
1100 1126 2.138656 AACCTTGTCGACGTCTCCCG 62.139 60.000 14.70 0.28 44.03 5.14
1101 1127 0.666577 CAACCTTGTCGACGTCTCCC 60.667 60.000 14.70 1.49 0.00 4.30
1111 1137 0.598065 GCATGGACACCAACCTTGTC 59.402 55.000 0.00 0.00 42.35 3.18
1124 1150 2.040464 GGAGGAGGAGGGCATGGA 60.040 66.667 0.00 0.00 0.00 3.41
1125 1151 1.284841 AAAGGAGGAGGAGGGCATGG 61.285 60.000 0.00 0.00 0.00 3.66
1161 1202 2.668144 ACCGACCAAAATTCCCAAGA 57.332 45.000 0.00 0.00 0.00 3.02
1175 1256 1.537562 CCATAGGCTCCGTAAACCGAC 60.538 57.143 0.00 0.00 39.56 4.79
1177 1258 0.249741 CCCATAGGCTCCGTAAACCG 60.250 60.000 0.00 0.00 0.00 4.44
1236 1322 4.680708 GCTTAAGACCCGATGATCAACTCA 60.681 45.833 6.67 0.00 38.53 3.41
1293 1408 3.740141 GCCTGCCTAACGCTTAACTGATA 60.740 47.826 0.00 0.00 38.78 2.15
1321 1436 3.943381 TCTCAACATGCTAATGGAAGCTG 59.057 43.478 0.00 0.00 43.19 4.24
1326 1441 5.449041 GCGAAATTCTCAACATGCTAATGGA 60.449 40.000 0.00 0.00 38.19 3.41
1336 1451 3.011949 GCAAAGGCGAAATTCTCAACA 57.988 42.857 0.00 0.00 0.00 3.33
1359 1474 6.003950 ACTAAAAACTGCTGCTAATGGAGAA 58.996 36.000 0.00 0.00 33.10 2.87
1485 1601 5.352284 CACATAGTAGTAGCCACTTTCAGG 58.648 45.833 0.00 0.00 36.14 3.86
1534 1650 3.768215 TCAGAGTCTGATGCATCTCAAGT 59.232 43.478 26.32 14.37 35.39 3.16
1536 1652 3.768215 ACTCAGAGTCTGATGCATCTCAA 59.232 43.478 26.32 9.84 39.92 3.02
1538 1654 4.821260 TCTACTCAGAGTCTGATGCATCTC 59.179 45.833 26.32 15.70 39.92 2.75
1583 1700 5.121768 TCTGTTAACGAAAAGAAGCTATGGC 59.878 40.000 0.26 0.00 39.06 4.40
1633 1751 3.546002 TCCCAAGCGTAAAATTTGACG 57.454 42.857 21.60 21.60 41.97 4.35
1646 1764 1.617018 GCTTTCCCCCATTCCCAAGC 61.617 60.000 0.00 0.00 0.00 4.01
1653 1771 0.544833 TGCACATGCTTTCCCCCATT 60.545 50.000 5.31 0.00 42.66 3.16
1710 1828 9.716507 TCTTTGTTTTGAATTAGAAGAAGTTCG 57.283 29.630 0.00 0.00 37.79 3.95
1721 1839 9.748708 CCTTGATGAGTTCTTTGTTTTGAATTA 57.251 29.630 0.00 0.00 0.00 1.40
1722 1840 8.260114 ACCTTGATGAGTTCTTTGTTTTGAATT 58.740 29.630 0.00 0.00 0.00 2.17
1723 1841 7.785033 ACCTTGATGAGTTCTTTGTTTTGAAT 58.215 30.769 0.00 0.00 0.00 2.57
1724 1842 7.169158 ACCTTGATGAGTTCTTTGTTTTGAA 57.831 32.000 0.00 0.00 0.00 2.69
1725 1843 6.773976 ACCTTGATGAGTTCTTTGTTTTGA 57.226 33.333 0.00 0.00 0.00 2.69
1729 1847 7.122650 TCAGAAAACCTTGATGAGTTCTTTGTT 59.877 33.333 0.00 0.00 0.00 2.83
1731 1849 7.031226 TCAGAAAACCTTGATGAGTTCTTTG 57.969 36.000 0.00 0.00 0.00 2.77
1734 1862 6.774656 ACATTCAGAAAACCTTGATGAGTTCT 59.225 34.615 0.00 0.00 0.00 3.01
1745 1873 5.535030 GGTCCTGTAAACATTCAGAAAACCT 59.465 40.000 0.00 0.00 34.02 3.50
1747 1875 6.635030 AGGTCCTGTAAACATTCAGAAAAC 57.365 37.500 0.00 0.00 34.02 2.43
1790 1938 0.763035 ACCTTTAGTTCAGCCGTGGT 59.237 50.000 0.00 0.00 0.00 4.16
1803 1951 1.816224 GGGCGATTTCTTGCACCTTTA 59.184 47.619 0.00 0.00 32.95 1.85
1899 2050 0.684535 TTCGTCCTGTTGATCTGCCA 59.315 50.000 0.00 0.00 0.00 4.92
1900 2051 1.066858 TCTTCGTCCTGTTGATCTGCC 60.067 52.381 0.00 0.00 0.00 4.85
1912 2063 2.683933 TCCCCCTGCTCTTCGTCC 60.684 66.667 0.00 0.00 0.00 4.79
2251 2402 4.903054 TCTGTTCTGAGACGTCTAAGGTA 58.097 43.478 26.58 14.24 0.00 3.08
2284 2435 1.945354 TTACCGAGGCGAGCTCCTTG 61.945 60.000 8.47 4.87 36.38 3.61
2338 2489 1.277580 CCCACCCTTCAGCAGAGGAT 61.278 60.000 1.97 0.00 0.00 3.24
2341 2492 2.045536 GCCCACCCTTCAGCAGAG 60.046 66.667 0.00 0.00 0.00 3.35
2353 2504 0.402121 ACTCTTCTCCCTTTGCCCAC 59.598 55.000 0.00 0.00 0.00 4.61
2599 2756 5.536538 TGAGTTAGATTGACACTGAGACTGT 59.463 40.000 0.00 0.00 0.00 3.55
2842 2999 3.733443 AAAACCCTTGCAAGCTTACAG 57.267 42.857 21.43 6.05 0.00 2.74
2912 3069 2.247358 GTTCCCCTTCAAGAATGGCAA 58.753 47.619 0.00 0.00 0.00 4.52
3102 3259 8.810427 CGTTTTTGACAGTACACTAGTCTAAAA 58.190 33.333 18.24 18.24 41.25 1.52
3103 3260 7.975616 ACGTTTTTGACAGTACACTAGTCTAAA 59.024 33.333 0.00 4.78 36.02 1.85
3104 3261 7.483307 ACGTTTTTGACAGTACACTAGTCTAA 58.517 34.615 0.00 0.00 33.56 2.10
3105 3262 7.031226 ACGTTTTTGACAGTACACTAGTCTA 57.969 36.000 0.00 0.00 33.56 2.59
3106 3263 5.899299 ACGTTTTTGACAGTACACTAGTCT 58.101 37.500 0.00 0.00 33.56 3.24
3107 3264 6.474751 AGAACGTTTTTGACAGTACACTAGTC 59.525 38.462 0.46 0.00 0.00 2.59
3108 3265 6.335777 AGAACGTTTTTGACAGTACACTAGT 58.664 36.000 0.46 0.00 0.00 2.57
3109 3266 6.823678 AGAACGTTTTTGACAGTACACTAG 57.176 37.500 0.46 0.00 0.00 2.57
3110 3267 8.876275 ATAAGAACGTTTTTGACAGTACACTA 57.124 30.769 13.87 0.00 0.00 2.74
3111 3268 7.781548 ATAAGAACGTTTTTGACAGTACACT 57.218 32.000 13.87 0.00 0.00 3.55
3117 3274 9.716507 CCCATAATATAAGAACGTTTTTGACAG 57.283 33.333 13.87 0.00 0.00 3.51
3118 3275 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
3119 3276 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
3120 3277 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
3121 3278 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
3122 3279 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
3123 3280 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
3124 3281 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
3125 3282 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
3126 3283 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
3127 3284 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
3128 3285 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
3129 3286 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
3130 3287 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3131 3288 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3132 3289 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3133 3290 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3134 3291 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3135 3292 3.400322 AGTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
3136 3293 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
3137 3294 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
3138 3295 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
3139 3296 1.145325 CTAGTACTCCCTCCGTCCCAT 59.855 57.143 0.00 0.00 0.00 4.00
3140 3297 0.549950 CTAGTACTCCCTCCGTCCCA 59.450 60.000 0.00 0.00 0.00 4.37
3141 3298 0.842635 TCTAGTACTCCCTCCGTCCC 59.157 60.000 0.00 0.00 0.00 4.46
3142 3299 2.955342 ATCTAGTACTCCCTCCGTCC 57.045 55.000 0.00 0.00 0.00 4.79
3143 3300 5.011943 TCTCTTATCTAGTACTCCCTCCGTC 59.988 48.000 0.00 0.00 0.00 4.79
3144 3301 4.906664 TCTCTTATCTAGTACTCCCTCCGT 59.093 45.833 0.00 0.00 0.00 4.69
3145 3302 5.221682 TGTCTCTTATCTAGTACTCCCTCCG 60.222 48.000 0.00 0.00 0.00 4.63
3146 3303 6.190346 TGTCTCTTATCTAGTACTCCCTCC 57.810 45.833 0.00 0.00 0.00 4.30
3147 3304 6.657541 CCATGTCTCTTATCTAGTACTCCCTC 59.342 46.154 0.00 0.00 0.00 4.30
3148 3305 6.333168 TCCATGTCTCTTATCTAGTACTCCCT 59.667 42.308 0.00 0.00 0.00 4.20
3149 3306 6.544650 TCCATGTCTCTTATCTAGTACTCCC 58.455 44.000 0.00 0.00 0.00 4.30
3150 3307 7.174253 CACTCCATGTCTCTTATCTAGTACTCC 59.826 44.444 0.00 0.00 0.00 3.85
3151 3308 7.717875 ACACTCCATGTCTCTTATCTAGTACTC 59.282 40.741 0.00 0.00 36.54 2.59
3152 3309 7.579105 ACACTCCATGTCTCTTATCTAGTACT 58.421 38.462 0.00 0.00 36.54 2.73
3153 3310 7.811117 ACACTCCATGTCTCTTATCTAGTAC 57.189 40.000 0.00 0.00 36.54 2.73
3340 3497 5.633830 ATCAGACAGCTACCAATTGTTTG 57.366 39.130 4.43 0.00 0.00 2.93
3409 3570 4.268797 AGCTGGAGATATGCACATAGTG 57.731 45.455 0.00 0.00 36.51 2.74
3449 3610 8.044060 TCTGTGCAAATTCTTACATTAGAAGG 57.956 34.615 0.00 0.00 37.55 3.46
3671 3834 2.810274 ACAGCTTGCAGTATGTGTGAAG 59.190 45.455 0.00 0.00 39.31 3.02
3785 3948 6.918626 ACACCTCTGAGATATTCATATGACG 58.081 40.000 4.48 0.00 34.68 4.35
3827 3990 8.862325 TGTTACTTCCTTGTCACATGATAAAT 57.138 30.769 0.00 0.00 0.00 1.40
3840 4003 3.937706 CAGCTCCTGATGTTACTTCCTTG 59.062 47.826 0.00 0.00 32.44 3.61
3866 4029 7.043391 GGCACAACTTTCAGACATTACTTTTTC 60.043 37.037 0.00 0.00 0.00 2.29
3896 4059 6.213600 AGGACTACCAGTGTCTTTGTTGATAT 59.786 38.462 0.00 0.00 38.94 1.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.