Multiple sequence alignment - TraesCS4D01G284700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G284700 chr4D 100.000 3568 0 0 1 3568 455743160 455746727 0.000000e+00 6589.0
1 TraesCS4D01G284700 chr4B 93.924 2946 123 24 645 3568 569628413 569631324 0.000000e+00 4397.0
2 TraesCS4D01G284700 chr4A 95.285 1018 39 4 1684 2699 11812654 11811644 0.000000e+00 1605.0
3 TraesCS4D01G284700 chr4A 94.389 998 46 3 643 1632 11813666 11812671 0.000000e+00 1524.0
4 TraesCS4D01G284700 chr4A 94.482 888 43 5 2684 3568 11811625 11810741 0.000000e+00 1363.0
5 TraesCS4D01G284700 chr4A 91.117 349 24 1 1 342 335508955 335509303 1.940000e-127 466.0
6 TraesCS4D01G284700 chr4A 86.624 157 20 1 466 622 335509345 335509500 4.740000e-39 172.0
7 TraesCS4D01G284700 chr6B 83.754 634 91 4 1 623 575618616 575619248 1.100000e-164 590.0
8 TraesCS4D01G284700 chr6B 92.500 120 9 0 504 623 227489990 227490109 4.740000e-39 172.0
9 TraesCS4D01G284700 chr6B 85.526 76 11 0 1106 1181 182586235 182586160 2.950000e-11 80.5
10 TraesCS4D01G284700 chr2B 92.839 391 18 3 1 382 548664196 548663807 3.110000e-155 558.0
11 TraesCS4D01G284700 chr5B 95.254 295 14 0 173 467 555234612 555234906 5.390000e-128 468.0
12 TraesCS4D01G284700 chr5B 97.917 48 1 0 37 84 555234566 555234613 2.280000e-12 84.2
13 TraesCS4D01G284700 chr5B 97.500 40 1 0 1 40 555233471 555233510 6.390000e-08 69.4
14 TraesCS4D01G284700 chr7A 91.549 142 11 1 475 615 53858044 53858185 1.010000e-45 195.0
15 TraesCS4D01G284700 chr7A 74.595 185 46 1 440 623 227957215 227957399 2.950000e-11 80.5
16 TraesCS4D01G284700 chr7D 92.381 105 8 0 1 105 465579077 465579181 2.220000e-32 150.0
17 TraesCS4D01G284700 chr7D 75.401 187 40 5 440 623 563373856 563373673 6.350000e-13 86.1
18 TraesCS4D01G284700 chr3A 90.265 113 11 0 511 623 696119 696231 7.980000e-32 148.0
19 TraesCS4D01G284700 chr3A 97.333 75 1 1 1 74 696051 696125 3.740000e-25 126.0
20 TraesCS4D01G284700 chr5D 92.632 95 5 1 528 622 560539476 560539384 6.210000e-28 135.0
21 TraesCS4D01G284700 chr6D 85.526 76 11 0 1106 1181 97914910 97914835 2.950000e-11 80.5
22 TraesCS4D01G284700 chr1D 74.731 186 44 3 440 623 99644820 99645004 2.950000e-11 80.5
23 TraesCS4D01G284700 chr6A 84.848 66 10 0 1111 1176 116920387 116920322 2.300000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G284700 chr4D 455743160 455746727 3567 False 6589.000000 6589 100.000000 1 3568 1 chr4D.!!$F1 3567
1 TraesCS4D01G284700 chr4B 569628413 569631324 2911 False 4397.000000 4397 93.924000 645 3568 1 chr4B.!!$F1 2923
2 TraesCS4D01G284700 chr4A 11810741 11813666 2925 True 1497.333333 1605 94.718667 643 3568 3 chr4A.!!$R1 2925
3 TraesCS4D01G284700 chr4A 335508955 335509500 545 False 319.000000 466 88.870500 1 622 2 chr4A.!!$F1 621
4 TraesCS4D01G284700 chr6B 575618616 575619248 632 False 590.000000 590 83.754000 1 623 1 chr6B.!!$F2 622
5 TraesCS4D01G284700 chr5B 555233471 555234906 1435 False 207.200000 468 96.890333 1 467 3 chr5B.!!$F1 466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
641 1712 0.037447 AGGAAGAACTCAGCTTGGGC 59.963 55.0 0.00 0.0 39.06 5.36 F
643 1714 0.037447 GAAGAACTCAGCTTGGGCCT 59.963 55.0 4.53 0.0 39.73 5.19 F
1015 2112 0.107456 ATCGATGGCAAGCTACTGGG 59.893 55.0 0.00 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1570 2667 1.221021 GTCGAAGGTGGGGATGACC 59.779 63.158 0.00 0.0 39.11 4.02 R
1987 3091 1.325640 CCATCGTCTGCATTTCTCACG 59.674 52.381 0.00 0.0 0.00 4.35 R
2720 3860 0.387565 AATTGCCACGGTGAACAACC 59.612 50.000 10.28 0.0 46.60 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 1131 2.588314 CTGCATGAGGGAGAGCGC 60.588 66.667 0.00 0.00 37.05 5.92
107 1169 1.114627 ATGTGCAGCGGTATGAGAGA 58.885 50.000 0.00 0.00 0.00 3.10
119 1181 0.820871 ATGAGAGACCTTGGACGCTC 59.179 55.000 13.57 13.57 34.50 5.03
120 1182 1.137825 GAGAGACCTTGGACGCTCG 59.862 63.158 7.03 0.00 32.80 5.03
130 1199 2.024871 GACGCTCGAGGATGGACG 59.975 66.667 15.58 10.37 0.00 4.79
149 1218 2.485426 ACGAAGCTCAATTGTGATGGTG 59.515 45.455 11.59 1.89 31.85 4.17
350 1419 3.307059 GGTGGAACTAGACTGTGCAGAAT 60.307 47.826 6.17 0.00 36.74 2.40
497 1566 6.093404 CAGAATAAAGTTAGTCACGAGCTCA 58.907 40.000 15.40 0.00 30.67 4.26
532 1603 1.517257 CACATCTCGGACAGCGGTC 60.517 63.158 8.64 8.64 43.55 4.79
547 1618 1.228154 GGTCTGGCTGTTTTCGGGT 60.228 57.895 0.00 0.00 0.00 5.28
549 1620 1.072505 TCTGGCTGTTTTCGGGTCC 59.927 57.895 0.00 0.00 0.00 4.46
553 1624 1.376812 GCTGTTTTCGGGTCCGGAT 60.377 57.895 7.81 0.00 40.25 4.18
560 1631 2.902705 TTCGGGTCCGGATTCTATTG 57.097 50.000 7.81 0.00 40.25 1.90
611 1682 7.560368 TCCTTGAGTAATGAAATCTCTCTTCC 58.440 38.462 0.00 0.00 30.75 3.46
613 1684 6.240549 TGAGTAATGAAATCTCTCTTCCCC 57.759 41.667 0.00 0.00 30.75 4.81
628 1699 4.511838 CCCCCGCAAAAAGGAAGA 57.488 55.556 0.00 0.00 0.00 2.87
629 1700 2.740121 CCCCCGCAAAAAGGAAGAA 58.260 52.632 0.00 0.00 0.00 2.52
630 1701 0.317160 CCCCCGCAAAAAGGAAGAAC 59.683 55.000 0.00 0.00 0.00 3.01
631 1702 1.328279 CCCCGCAAAAAGGAAGAACT 58.672 50.000 0.00 0.00 0.00 3.01
632 1703 1.269723 CCCCGCAAAAAGGAAGAACTC 59.730 52.381 0.00 0.00 0.00 3.01
633 1704 1.953686 CCCGCAAAAAGGAAGAACTCA 59.046 47.619 0.00 0.00 0.00 3.41
634 1705 2.030805 CCCGCAAAAAGGAAGAACTCAG 60.031 50.000 0.00 0.00 0.00 3.35
635 1706 2.605580 CCGCAAAAAGGAAGAACTCAGC 60.606 50.000 0.00 0.00 0.00 4.26
636 1707 2.291741 CGCAAAAAGGAAGAACTCAGCT 59.708 45.455 0.00 0.00 0.00 4.24
637 1708 3.243201 CGCAAAAAGGAAGAACTCAGCTT 60.243 43.478 0.00 0.00 0.00 3.74
638 1709 4.047142 GCAAAAAGGAAGAACTCAGCTTG 58.953 43.478 0.00 0.00 0.00 4.01
639 1710 4.614946 CAAAAAGGAAGAACTCAGCTTGG 58.385 43.478 0.00 0.00 0.00 3.61
640 1711 2.575805 AAGGAAGAACTCAGCTTGGG 57.424 50.000 0.00 0.00 0.00 4.12
641 1712 0.037447 AGGAAGAACTCAGCTTGGGC 59.963 55.000 0.00 0.00 39.06 5.36
642 1713 0.962855 GGAAGAACTCAGCTTGGGCC 60.963 60.000 0.00 0.00 39.73 5.80
643 1714 0.037447 GAAGAACTCAGCTTGGGCCT 59.963 55.000 4.53 0.00 39.73 5.19
702 1776 3.406361 CTGTCTGCGCCACGACAC 61.406 66.667 16.94 1.36 35.40 3.67
705 1779 2.030412 TCTGCGCCACGACACAAT 59.970 55.556 4.18 0.00 0.00 2.71
714 1788 1.444895 ACGACACAATACCGACCGC 60.445 57.895 0.00 0.00 0.00 5.68
927 2012 3.506455 TCTCGTCGTCTTCCTCTTGATTT 59.494 43.478 0.00 0.00 0.00 2.17
931 2016 3.368236 GTCGTCTTCCTCTTGATTTTCGG 59.632 47.826 0.00 0.00 0.00 4.30
948 2033 2.256461 GCCGAGGTGTCGTACGTT 59.744 61.111 16.05 0.00 45.30 3.99
956 2041 0.382151 GTGTCGTACGTTGGTTTGCG 60.382 55.000 16.05 0.00 0.00 4.85
957 2042 0.805322 TGTCGTACGTTGGTTTGCGT 60.805 50.000 16.05 0.00 44.02 5.24
1015 2112 0.107456 ATCGATGGCAAGCTACTGGG 59.893 55.000 0.00 0.00 0.00 4.45
1335 2432 1.183549 ACCGCTTCTACCTCGACAAT 58.816 50.000 0.00 0.00 0.00 2.71
1338 2435 1.291132 GCTTCTACCTCGACAATGGC 58.709 55.000 0.00 0.00 0.00 4.40
1397 2494 3.257624 TCTCATCTCATGGACATGGATCG 59.742 47.826 11.98 8.62 39.24 3.69
1426 2523 4.637534 GCTGAACTGGTGATTGATGTATGT 59.362 41.667 0.00 0.00 0.00 2.29
1516 2613 2.746277 GGCAAGTACCTGCACGGG 60.746 66.667 17.88 0.00 44.52 5.28
1551 2648 4.838486 CGGCGAGACGAGGCTGTC 62.838 72.222 0.00 0.00 39.21 3.51
1634 2735 1.335810 TCTCCACATACGACGTATGCC 59.664 52.381 36.04 0.00 46.76 4.40
1644 2745 8.440059 CACATACGACGTATGCCAATTTTATAT 58.560 33.333 36.04 17.17 46.76 0.86
1645 2746 8.440059 ACATACGACGTATGCCAATTTTATATG 58.560 33.333 36.04 18.29 46.76 1.78
1646 2747 6.854496 ACGACGTATGCCAATTTTATATGT 57.146 33.333 0.00 0.00 31.21 2.29
1647 2748 7.949903 ACGACGTATGCCAATTTTATATGTA 57.050 32.000 0.00 0.00 29.30 2.29
1648 2749 8.542497 ACGACGTATGCCAATTTTATATGTAT 57.458 30.769 0.00 0.00 29.30 2.29
1649 2750 9.642327 ACGACGTATGCCAATTTTATATGTATA 57.358 29.630 0.00 0.00 29.30 1.47
1719 2820 4.019174 CAGACAGACATGGGGCTAAAAAT 58.981 43.478 0.00 0.00 0.00 1.82
1777 2881 4.735132 CCCCTGAAGAACGCGCGA 62.735 66.667 39.36 12.31 0.00 5.87
1987 3091 0.801251 GCACACTGATGAACTGAGCC 59.199 55.000 0.00 0.00 0.00 4.70
2225 3329 2.245159 TCATCGACATCTTCATGGCC 57.755 50.000 0.00 0.00 33.90 5.36
2461 3565 3.340782 GGTAAAGGGGGCCGGGAA 61.341 66.667 2.18 0.00 0.00 3.97
2526 3630 2.683933 GGAGGACAAGGCTCGGGA 60.684 66.667 0.00 0.00 0.00 5.14
2662 3768 5.826737 AGAGAAAGCTTCACATGGATAATGG 59.173 40.000 0.00 0.00 40.94 3.16
2664 3770 6.371278 AGAAAGCTTCACATGGATAATGGAT 58.629 36.000 0.00 0.00 40.94 3.41
2679 3785 6.779539 GGATAATGGATGGAAATGAGGAGTTT 59.220 38.462 0.00 0.00 0.00 2.66
2720 3860 7.535258 CACTTAATGAAACCAAAATGTCTCTCG 59.465 37.037 0.00 0.00 0.00 4.04
2721 3861 5.376854 AATGAAACCAAAATGTCTCTCGG 57.623 39.130 0.00 0.00 0.00 4.63
2725 3865 3.208747 ACCAAAATGTCTCTCGGTTGT 57.791 42.857 0.00 0.00 0.00 3.32
2741 3881 0.249238 TTGTTCACCGTGGCAATTGC 60.249 50.000 22.47 22.47 41.14 3.56
2758 3898 5.822519 GCAATTGCATATCCCTTCCGATATA 59.177 40.000 25.36 0.00 41.59 0.86
2799 3941 1.136474 TGAACAATAGCGCAAACGACG 60.136 47.619 11.47 0.00 43.93 5.12
2866 4008 9.373603 CTTCAAAATAAATGAATGGATTGCAGA 57.626 29.630 0.00 0.00 36.30 4.26
2877 4021 7.993101 TGAATGGATTGCAGAATAGAAAGAAG 58.007 34.615 0.00 0.00 0.00 2.85
2891 4035 7.767250 ATAGAAAGAAGAAGAAAAACCTGGG 57.233 36.000 0.00 0.00 0.00 4.45
2910 4054 2.678336 GGGCTATACAACAGAACACTGC 59.322 50.000 0.00 0.00 35.31 4.40
2911 4055 2.678336 GGCTATACAACAGAACACTGCC 59.322 50.000 0.00 0.00 35.31 4.85
3090 4234 0.179119 CGTGGGGGTTAGCGTAGAAG 60.179 60.000 0.00 0.00 0.00 2.85
3102 4246 3.224269 AGCGTAGAAGTAATCCTCCTCC 58.776 50.000 0.00 0.00 0.00 4.30
3123 4267 3.289076 CTTCGGCTTGTTTTCGAGTTTC 58.711 45.455 0.00 0.00 34.33 2.78
3126 4270 1.600485 GGCTTGTTTTCGAGTTTCCGA 59.400 47.619 0.00 0.00 36.70 4.55
3215 4359 6.692681 CAGGAAATTGTCTTGTTGTTGTACAG 59.307 38.462 0.00 0.00 0.00 2.74
3240 4384 7.395489 AGGTCTATAAGTTCAACTAGTTTCCGA 59.605 37.037 5.07 0.00 0.00 4.55
3369 4513 5.967088 ACTAGTACGAATCTTGTTGCAGAT 58.033 37.500 0.00 0.00 34.78 2.90
3381 4525 5.704053 TCTTGTTGCAGATGATGGCTATATG 59.296 40.000 0.00 0.00 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 1131 3.304659 GCACATGTACCTTTTGAGTGGTG 60.305 47.826 0.00 0.00 37.74 4.17
107 1169 1.682684 ATCCTCGAGCGTCCAAGGT 60.683 57.895 6.99 0.00 0.00 3.50
119 1181 0.173481 TTGAGCTTCGTCCATCCTCG 59.827 55.000 0.00 0.00 0.00 4.63
120 1182 2.611225 ATTGAGCTTCGTCCATCCTC 57.389 50.000 0.00 0.00 0.00 3.71
130 1199 2.821969 ACCACCATCACAATTGAGCTTC 59.178 45.455 13.59 0.00 34.35 3.86
149 1218 1.821136 ACCAGTAGCCTGTACGTAACC 59.179 52.381 0.00 0.00 36.95 2.85
276 1345 1.424302 ACGCTAGGCCCTCTCTACATA 59.576 52.381 0.00 0.00 0.00 2.29
308 1377 2.481795 CCATGATCGGCAAATTTGTCCC 60.482 50.000 16.82 10.50 0.00 4.46
350 1419 1.474879 TGCTGTAATCATCGACACGGA 59.525 47.619 0.00 0.00 0.00 4.69
471 1540 4.625742 GCTCGTGACTAACTTTATTCTGCA 59.374 41.667 0.00 0.00 0.00 4.41
518 1587 3.062466 CCAGACCGCTGTCCGAGA 61.062 66.667 4.47 0.00 42.81 4.04
532 1603 2.325082 CGGACCCGAAAACAGCCAG 61.325 63.158 1.54 0.00 42.83 4.85
547 1618 4.935205 CACAAGTTCACAATAGAATCCGGA 59.065 41.667 6.61 6.61 0.00 5.14
549 1620 5.862924 ACACAAGTTCACAATAGAATCCG 57.137 39.130 0.00 0.00 0.00 4.18
553 1624 6.204688 CAGCCTTACACAAGTTCACAATAGAA 59.795 38.462 0.00 0.00 0.00 2.10
560 1631 3.728845 TCTCAGCCTTACACAAGTTCAC 58.271 45.455 0.00 0.00 0.00 3.18
611 1682 0.317160 GTTCTTCCTTTTTGCGGGGG 59.683 55.000 0.00 0.00 0.00 5.40
613 1684 1.953686 TGAGTTCTTCCTTTTTGCGGG 59.046 47.619 0.00 0.00 0.00 6.13
617 1688 4.500375 CCCAAGCTGAGTTCTTCCTTTTTG 60.500 45.833 0.00 0.00 0.00 2.44
621 1692 1.546548 GCCCAAGCTGAGTTCTTCCTT 60.547 52.381 0.00 0.00 35.50 3.36
622 1693 0.037447 GCCCAAGCTGAGTTCTTCCT 59.963 55.000 0.00 0.00 35.50 3.36
623 1694 0.962855 GGCCCAAGCTGAGTTCTTCC 60.963 60.000 0.00 0.00 39.73 3.46
624 1695 0.037447 AGGCCCAAGCTGAGTTCTTC 59.963 55.000 0.00 0.00 39.73 2.87
625 1696 0.480252 AAGGCCCAAGCTGAGTTCTT 59.520 50.000 0.00 0.00 39.73 2.52
626 1697 0.251077 CAAGGCCCAAGCTGAGTTCT 60.251 55.000 0.00 0.00 39.73 3.01
627 1698 1.246737 CCAAGGCCCAAGCTGAGTTC 61.247 60.000 0.00 0.00 39.73 3.01
628 1699 1.228675 CCAAGGCCCAAGCTGAGTT 60.229 57.895 0.00 0.00 39.73 3.01
629 1700 2.437897 CCAAGGCCCAAGCTGAGT 59.562 61.111 0.00 0.00 39.73 3.41
630 1701 2.362120 CCCAAGGCCCAAGCTGAG 60.362 66.667 0.00 0.00 39.73 3.35
631 1702 3.983420 CCCCAAGGCCCAAGCTGA 61.983 66.667 0.00 0.00 39.73 4.26
641 1712 0.537371 AAACTGAAGACGCCCCAAGG 60.537 55.000 0.00 0.00 0.00 3.61
642 1713 0.593128 CAAACTGAAGACGCCCCAAG 59.407 55.000 0.00 0.00 0.00 3.61
643 1714 0.821711 CCAAACTGAAGACGCCCCAA 60.822 55.000 0.00 0.00 0.00 4.12
702 1776 1.134788 AGAAGGAAGCGGTCGGTATTG 60.135 52.381 0.00 0.00 0.00 1.90
705 1779 0.529378 GAAGAAGGAAGCGGTCGGTA 59.471 55.000 0.00 0.00 0.00 4.02
714 1788 3.131709 TGCAGTGGAAGAAGAAGGAAG 57.868 47.619 0.00 0.00 0.00 3.46
912 1997 2.420372 GGCCGAAAATCAAGAGGAAGAC 59.580 50.000 0.00 0.00 0.00 3.01
927 2012 2.672651 TACGACACCTCGGCCGAA 60.673 61.111 30.53 13.22 44.80 4.30
931 2016 2.084681 CAACGTACGACACCTCGGC 61.085 63.158 24.41 0.00 44.80 5.54
956 2041 2.731348 GATCGATCAGCCGCCGAC 60.731 66.667 20.52 0.00 35.02 4.79
957 2042 4.328231 CGATCGATCAGCCGCCGA 62.328 66.667 24.40 0.00 36.72 5.54
993 2090 2.554142 CAGTAGCTTGCCATCGATTGA 58.446 47.619 0.00 0.00 0.00 2.57
994 2091 1.600957 CCAGTAGCTTGCCATCGATTG 59.399 52.381 0.00 0.00 0.00 2.67
996 2093 0.107456 CCCAGTAGCTTGCCATCGAT 59.893 55.000 0.00 0.00 0.00 3.59
997 2094 1.522092 CCCAGTAGCTTGCCATCGA 59.478 57.895 0.00 0.00 0.00 3.59
998 2095 1.524621 CCCCAGTAGCTTGCCATCG 60.525 63.158 0.00 0.00 0.00 3.84
1335 2432 2.070039 CGGGAAGATGTAGGGGCCA 61.070 63.158 4.39 0.00 0.00 5.36
1338 2435 0.254747 TTTGCGGGAAGATGTAGGGG 59.745 55.000 0.00 0.00 0.00 4.79
1367 2464 2.057316 CCATGAGATGAGATCGTTCGC 58.943 52.381 0.00 0.00 0.00 4.70
1397 2494 0.671781 ATCACCAGTTCAGCTCGCAC 60.672 55.000 0.00 0.00 0.00 5.34
1426 2523 2.492881 CCTGGCACAACTCAATGCAATA 59.507 45.455 0.00 0.00 43.93 1.90
1516 2613 1.500108 CGAGCATGCTCCTGATCTTC 58.500 55.000 35.77 14.00 39.77 2.87
1570 2667 1.221021 GTCGAAGGTGGGGATGACC 59.779 63.158 0.00 0.00 39.11 4.02
1650 2751 9.585369 TCTATCTGATCATCACATTAGTTCTCT 57.415 33.333 0.00 0.00 0.00 3.10
1777 2881 4.357947 ATGCACACGTCGGCGAGT 62.358 61.111 20.03 13.00 42.28 4.18
1915 3019 1.646189 GACGGACAGAGGCTTGATTC 58.354 55.000 0.00 0.00 0.00 2.52
1924 3028 3.982829 TCTGACCGACGGACAGAG 58.017 61.111 34.77 18.89 46.01 3.35
1987 3091 1.325640 CCATCGTCTGCATTTCTCACG 59.674 52.381 0.00 0.00 0.00 4.35
2662 3768 7.703058 TTTTCCTAAACTCCTCATTTCCATC 57.297 36.000 0.00 0.00 0.00 3.51
2664 3770 9.594936 TTATTTTTCCTAAACTCCTCATTTCCA 57.405 29.630 0.00 0.00 0.00 3.53
2699 3839 4.827284 ACCGAGAGACATTTTGGTTTCATT 59.173 37.500 0.00 0.00 0.00 2.57
2720 3860 0.387565 AATTGCCACGGTGAACAACC 59.612 50.000 10.28 0.00 46.60 3.77
2721 3861 1.486439 CAATTGCCACGGTGAACAAC 58.514 50.000 10.28 0.00 0.00 3.32
2725 3865 1.539157 TATGCAATTGCCACGGTGAA 58.461 45.000 26.94 6.63 41.18 3.18
2799 3941 6.761242 AGGAGGCTTTGTGTAAATTTTTGTTC 59.239 34.615 0.00 0.00 0.00 3.18
2866 4008 7.255977 GCCCAGGTTTTTCTTCTTCTTTCTATT 60.256 37.037 0.00 0.00 0.00 1.73
2877 4021 5.475564 TGTTGTATAGCCCAGGTTTTTCTTC 59.524 40.000 0.00 0.00 0.00 2.87
2891 4035 3.334691 TGGCAGTGTTCTGTTGTATAGC 58.665 45.455 0.00 0.00 43.05 2.97
2910 4054 4.550063 CGATGATCGTTTAACCGATGTTGG 60.550 45.833 12.97 0.00 46.85 3.77
2911 4055 4.505300 CGATGATCGTTTAACCGATGTTG 58.495 43.478 12.97 2.04 46.85 3.33
3102 4246 3.289076 GAAACTCGAAAACAAGCCGAAG 58.711 45.455 0.00 0.00 31.59 3.79
3126 4270 2.732658 GTCCAACCGTCCTGTCGT 59.267 61.111 0.00 0.00 0.00 4.34
3215 4359 7.487509 GTCGGAAACTAGTTGAACTTATAGACC 59.512 40.741 9.34 0.60 0.00 3.85
3369 4513 9.700831 AGATATAGTGTGTACATATAGCCATCA 57.299 33.333 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.