Multiple sequence alignment - TraesCS4D01G283900
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS4D01G283900
chr4D
100.000
3726
0
0
1
3726
455529159
455532884
0.000000e+00
6881
1
TraesCS4D01G283900
chr4D
81.088
1158
197
16
1049
2193
455652557
455653705
0.000000e+00
905
2
TraesCS4D01G283900
chr4D
83.224
918
142
9
927
1834
455599864
455600779
0.000000e+00
832
3
TraesCS4D01G283900
chr4D
93.586
343
21
1
370
712
419418607
419418948
9.230000e-141
510
4
TraesCS4D01G283900
chr4D
72.635
888
177
43
1331
2195
452557461
452556617
2.240000e-57
233
5
TraesCS4D01G283900
chr4D
83.482
224
37
0
1011
1234
455618661
455618884
3.770000e-50
209
6
TraesCS4D01G283900
chr4D
73.037
675
141
29
1544
2196
455648708
455649363
2.270000e-47
200
7
TraesCS4D01G283900
chr4D
89.928
139
12
2
239
375
419418244
419418382
1.060000e-40
178
8
TraesCS4D01G283900
chr4D
73.000
400
78
15
1064
1460
455648312
455648684
3.040000e-21
113
9
TraesCS4D01G283900
chr4B
92.724
2845
148
27
753
3549
568600077
568602910
0.000000e+00
4052
10
TraesCS4D01G283900
chr4B
80.730
1261
218
15
945
2196
568714549
568715793
0.000000e+00
959
11
TraesCS4D01G283900
chr4B
73.973
657
129
29
1557
2195
565743150
565742518
1.040000e-55
228
12
TraesCS4D01G283900
chr4B
72.370
865
190
33
1282
2114
568634662
568635509
1.040000e-55
228
13
TraesCS4D01G283900
chr4B
79.070
258
45
4
1871
2119
568665975
568666232
6.400000e-38
169
14
TraesCS4D01G283900
chr4B
77.049
305
60
6
1895
2196
568605431
568605728
2.300000e-37
167
15
TraesCS4D01G283900
chr4B
85.714
147
15
5
230
375
425293240
425293381
2.320000e-32
150
16
TraesCS4D01G283900
chr4A
95.818
1626
59
4
791
2415
12400215
12401832
0.000000e+00
2617
17
TraesCS4D01G283900
chr4A
90.793
1173
62
24
2415
3565
12401994
12403142
0.000000e+00
1526
18
TraesCS4D01G283900
chr4A
79.511
1269
205
37
946
2194
12163098
12161865
0.000000e+00
852
19
TraesCS4D01G283900
chr4A
83.315
893
142
7
943
1830
12211080
12210190
0.000000e+00
817
20
TraesCS4D01G283900
chr4A
94.079
152
9
0
3573
3724
12387055
12386904
8.050000e-57
231
21
TraesCS4D01G283900
chr4A
78.125
320
54
12
1888
2196
12210159
12209845
4.910000e-44
189
22
TraesCS4D01G283900
chr4A
73.815
401
76
15
1064
1460
12169776
12169401
8.400000e-27
132
23
TraesCS4D01G283900
chr2D
95.252
337
15
1
370
706
644013532
644013197
1.970000e-147
532
24
TraesCS4D01G283900
chr2D
94.152
342
19
1
370
711
56634196
56634536
1.530000e-143
520
25
TraesCS4D01G283900
chr2D
93.660
347
20
2
370
716
346438034
346438378
5.520000e-143
518
26
TraesCS4D01G283900
chr2D
93.605
344
20
2
370
713
236137018
236137359
2.570000e-141
512
27
TraesCS4D01G283900
chr2D
96.047
253
10
0
2
254
596267033
596266781
2.680000e-111
412
28
TraesCS4D01G283900
chr2D
95.257
253
12
0
2
254
603143684
603143936
5.800000e-108
401
29
TraesCS4D01G283900
chr2D
95.257
253
12
0
2
254
627748575
627748323
5.800000e-108
401
30
TraesCS4D01G283900
chr2D
91.367
139
10
2
239
375
7033099
7033237
4.910000e-44
189
31
TraesCS4D01G283900
chr2D
89.928
139
12
2
239
375
165437252
165437114
1.060000e-40
178
32
TraesCS4D01G283900
chr2D
87.755
147
12
5
230
375
130721837
130721696
2.300000e-37
167
33
TraesCS4D01G283900
chr7A
94.721
341
14
3
370
709
215116882
215116545
9.170000e-146
527
34
TraesCS4D01G283900
chr6B
94.955
337
15
2
370
706
636476164
636476498
9.170000e-146
527
35
TraesCS4D01G283900
chr6B
96.552
87
3
0
2258
2344
551951958
551951872
1.080000e-30
145
36
TraesCS4D01G283900
chr6B
95.294
85
4
0
2260
2344
48874037
48874121
6.490000e-28
135
37
TraesCS4D01G283900
chr1D
94.362
337
18
1
370
706
250225352
250225687
1.980000e-142
516
38
TraesCS4D01G283900
chr1D
95.652
253
11
0
2
254
250224654
250224906
1.250000e-109
407
39
TraesCS4D01G283900
chr1D
89.209
139
13
2
239
375
424636504
424636642
4.950000e-39
172
40
TraesCS4D01G283900
chr1D
89.209
139
13
2
239
375
426390298
426390160
4.950000e-39
172
41
TraesCS4D01G283900
chr3D
94.100
339
19
1
370
708
515976018
515975681
7.140000e-142
514
42
TraesCS4D01G283900
chr3D
95.257
253
12
0
2
254
382521812
382521560
5.800000e-108
401
43
TraesCS4D01G283900
chr3D
95.257
253
12
0
2
254
553936065
553935813
5.800000e-108
401
44
TraesCS4D01G283900
chr3D
89.928
139
12
2
239
375
45867091
45867229
1.060000e-40
178
45
TraesCS4D01G283900
chr3D
95.294
85
4
0
2260
2344
22679146
22679062
6.490000e-28
135
46
TraesCS4D01G283900
chr3D
95.294
85
4
0
2260
2344
22767812
22767896
6.490000e-28
135
47
TraesCS4D01G283900
chr3D
91.089
101
8
1
2254
2354
66523470
66523371
6.490000e-28
135
48
TraesCS4D01G283900
chr5D
95.968
248
10
0
2
249
179971690
179971443
1.610000e-108
403
49
TraesCS4D01G283900
chr5D
85.567
194
28
0
1048
1241
431609846
431609653
1.750000e-48
204
50
TraesCS4D01G283900
chr5D
86.022
186
26
0
1049
1234
431617926
431617741
2.270000e-47
200
51
TraesCS4D01G283900
chr5D
87.075
147
13
5
230
375
544616836
544616977
1.070000e-35
161
52
TraesCS4D01G283900
chr5A
95.257
253
12
0
2
254
17723902
17724154
5.800000e-108
401
53
TraesCS4D01G283900
chr5A
85.484
186
27
0
1049
1234
546703517
546703332
1.060000e-45
195
54
TraesCS4D01G283900
chr6D
95.257
253
11
1
2
254
232376474
232376223
2.080000e-107
399
55
TraesCS4D01G283900
chr6D
92.222
90
7
0
2261
2350
299191348
299191259
1.090000e-25
128
56
TraesCS4D01G283900
chr5B
87.629
194
24
0
1048
1241
521154649
521154456
3.740000e-55
226
57
TraesCS4D01G283900
chr7D
91.367
139
10
2
239
375
64047077
64047215
4.910000e-44
189
58
TraesCS4D01G283900
chr7D
90.647
139
11
2
239
375
175931769
175931631
2.290000e-42
183
59
TraesCS4D01G283900
chr2A
90.647
139
11
2
239
375
661434121
661433983
2.290000e-42
183
60
TraesCS4D01G283900
chr1B
85.315
143
16
4
230
372
37060055
37059918
3.880000e-30
143
61
TraesCS4D01G283900
chr7B
89.720
107
11
0
2244
2350
639796301
639796195
1.800000e-28
137
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS4D01G283900
chr4D
455529159
455532884
3725
False
6881.0
6881
100.000000
1
3726
1
chr4D.!!$F1
3725
1
TraesCS4D01G283900
chr4D
455599864
455600779
915
False
832.0
832
83.224000
927
1834
1
chr4D.!!$F2
907
2
TraesCS4D01G283900
chr4D
455648312
455653705
5393
False
406.0
905
75.708333
1049
2196
3
chr4D.!!$F5
1147
3
TraesCS4D01G283900
chr4D
419418244
419418948
704
False
344.0
510
91.757000
239
712
2
chr4D.!!$F4
473
4
TraesCS4D01G283900
chr4D
452556617
452557461
844
True
233.0
233
72.635000
1331
2195
1
chr4D.!!$R1
864
5
TraesCS4D01G283900
chr4B
568600077
568605728
5651
False
2109.5
4052
84.886500
753
3549
2
chr4B.!!$F5
2796
6
TraesCS4D01G283900
chr4B
568714549
568715793
1244
False
959.0
959
80.730000
945
2196
1
chr4B.!!$F4
1251
7
TraesCS4D01G283900
chr4B
565742518
565743150
632
True
228.0
228
73.973000
1557
2195
1
chr4B.!!$R1
638
8
TraesCS4D01G283900
chr4B
568634662
568635509
847
False
228.0
228
72.370000
1282
2114
1
chr4B.!!$F2
832
9
TraesCS4D01G283900
chr4A
12400215
12403142
2927
False
2071.5
2617
93.305500
791
3565
2
chr4A.!!$F1
2774
10
TraesCS4D01G283900
chr4A
12161865
12163098
1233
True
852.0
852
79.511000
946
2194
1
chr4A.!!$R1
1248
11
TraesCS4D01G283900
chr4A
12209845
12211080
1235
True
503.0
817
80.720000
943
2196
2
chr4A.!!$R4
1253
12
TraesCS4D01G283900
chr1D
250224654
250225687
1033
False
461.5
516
95.007000
2
706
2
chr1D.!!$F2
704
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
255
346
0.461961
GACTGCATAGGAGCCGTTCT
59.538
55.0
0.0
0.0
31.92
3.01
F
1309
4515
0.109226
GGTCTCCAACTTCGTCTCCG
60.109
60.0
0.0
0.0
0.00
4.63
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1854
5094
0.107508
CAATGGTCGGCATGTCCTCT
60.108
55.000
0.0
0.0
0.00
3.69
R
3190
6648
1.202348
GCTAGTCTTGCTCGCATCTCA
60.202
52.381
0.0
0.0
36.11
3.27
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
42
43
6.426980
TTGATCTGAAGTTCACATATGTGC
57.573
37.500
27.71
16.38
45.25
4.57
44
45
6.877236
TGATCTGAAGTTCACATATGTGCTA
58.123
36.000
27.71
16.56
45.25
3.49
50
51
3.198635
AGTTCACATATGTGCTAGCTGGT
59.801
43.478
27.71
3.96
45.25
4.00
127
128
1.820581
GGATCAACATCCCCGACGA
59.179
57.895
0.00
0.00
42.91
4.20
163
164
4.129757
TGCTGGCTATGCATGTCG
57.870
55.556
10.16
0.00
35.31
4.35
251
342
0.600557
CTAGGACTGCATAGGAGCCG
59.399
60.000
0.00
0.00
0.00
5.52
255
346
0.461961
GACTGCATAGGAGCCGTTCT
59.538
55.000
0.00
0.00
31.92
3.01
263
354
2.170012
AGGAGCCGTTCTACCCATAA
57.830
50.000
0.00
0.00
0.00
1.90
278
369
5.789574
ACCCATAATCCACTCAGGTTAAA
57.210
39.130
0.00
0.00
39.02
1.52
317
408
3.812053
GCATTCTGCATAACTCGATCCTT
59.188
43.478
0.00
0.00
44.26
3.36
335
426
2.089980
CTTCAGTGGGGCTTTGATGAG
58.910
52.381
0.00
0.00
0.00
2.90
391
722
7.809331
TGACAATTTGAACTGTCATTTGATAGC
59.191
33.333
4.11
0.00
45.31
2.97
444
775
3.441572
GCTGGCACTACATGTTCAGATTT
59.558
43.478
2.30
0.00
35.24
2.17
476
807
4.408276
AGCTCACCACTAGTTAGAAGTGA
58.592
43.478
4.84
12.19
45.89
3.41
569
900
2.946785
ACGTGGGGTCAAAAATGGTTA
58.053
42.857
0.00
0.00
0.00
2.85
625
956
1.843368
ATGTGCATCTGGGGTCTTTG
58.157
50.000
0.00
0.00
0.00
2.77
706
1037
1.338337
CAATGTAACCAAACACGCCCA
59.662
47.619
0.00
0.00
30.75
5.36
714
1045
2.159382
CCAAACACGCCCATAGTTCTT
58.841
47.619
0.00
0.00
0.00
2.52
715
1046
2.556622
CCAAACACGCCCATAGTTCTTT
59.443
45.455
0.00
0.00
0.00
2.52
716
1047
3.005367
CCAAACACGCCCATAGTTCTTTT
59.995
43.478
0.00
0.00
0.00
2.27
717
1048
4.216687
CCAAACACGCCCATAGTTCTTTTA
59.783
41.667
0.00
0.00
0.00
1.52
719
1050
3.606687
ACACGCCCATAGTTCTTTTAGG
58.393
45.455
0.00
0.00
0.00
2.69
720
1051
2.943033
CACGCCCATAGTTCTTTTAGGG
59.057
50.000
0.00
0.00
39.33
3.53
721
1052
2.092592
ACGCCCATAGTTCTTTTAGGGG
60.093
50.000
0.00
0.00
43.39
4.79
722
1053
2.092592
CGCCCATAGTTCTTTTAGGGGT
60.093
50.000
4.19
0.00
42.68
4.95
723
1054
3.552875
GCCCATAGTTCTTTTAGGGGTC
58.447
50.000
4.19
0.00
42.68
4.46
724
1055
3.687551
GCCCATAGTTCTTTTAGGGGTCC
60.688
52.174
4.19
0.00
42.68
4.46
726
1057
4.229812
CCCATAGTTCTTTTAGGGGTCCTT
59.770
45.833
0.00
0.00
37.35
3.36
728
1059
6.102762
CCCATAGTTCTTTTAGGGGTCCTTAT
59.897
42.308
0.00
0.00
37.35
1.73
729
1060
6.998673
CCATAGTTCTTTTAGGGGTCCTTATG
59.001
42.308
0.00
0.00
34.61
1.90
732
1063
4.855298
TCTTTTAGGGGTCCTTATGGTG
57.145
45.455
0.00
0.00
34.61
4.17
733
1064
3.526019
TCTTTTAGGGGTCCTTATGGTGG
59.474
47.826
0.00
0.00
34.61
4.61
734
1065
2.672703
TTAGGGGTCCTTATGGTGGT
57.327
50.000
0.00
0.00
34.61
4.16
735
1066
3.799590
TTAGGGGTCCTTATGGTGGTA
57.200
47.619
0.00
0.00
34.61
3.25
736
1067
2.910360
AGGGGTCCTTATGGTGGTAT
57.090
50.000
0.00
0.00
34.23
2.73
740
1071
3.248888
GGGTCCTTATGGTGGTATAGCT
58.751
50.000
3.20
0.00
34.23
3.32
742
1073
4.104261
GGGTCCTTATGGTGGTATAGCTTT
59.896
45.833
3.20
0.00
34.23
3.51
743
1074
5.398695
GGGTCCTTATGGTGGTATAGCTTTT
60.399
44.000
3.20
0.00
34.23
2.27
744
1075
6.127101
GGTCCTTATGGTGGTATAGCTTTTT
58.873
40.000
3.20
0.00
34.23
1.94
877
1208
0.684535
TTCACACGAGCCCATTCAGA
59.315
50.000
0.00
0.00
0.00
3.27
882
1213
2.464459
CGAGCCCATTCAGAACGCC
61.464
63.158
0.00
0.00
0.00
5.68
1309
4515
0.109226
GGTCTCCAACTTCGTCTCCG
60.109
60.000
0.00
0.00
0.00
4.63
1497
4704
3.871006
CGGAAATCATCTGGAATCGTCAA
59.129
43.478
0.00
0.00
0.00
3.18
1645
4879
2.182030
CCGACGAGGAACAGGAGC
59.818
66.667
0.00
0.00
45.00
4.70
1709
4949
3.136077
AGTGACATGATCTCCATTGAGGG
59.864
47.826
0.00
0.00
39.23
4.30
1825
5065
1.480954
TGGGTGAGGAAGAACTATCGC
59.519
52.381
0.00
0.00
0.00
4.58
1848
5088
6.238842
CGCTGATTGGTCCAATATTTGAAGAT
60.239
38.462
17.33
0.00
33.90
2.40
1867
5107
2.364972
TGATAGAGAGGACATGCCGA
57.635
50.000
0.00
0.00
43.43
5.54
1950
5208
5.529289
AGACTCTACCTATGGTCAATGGAA
58.471
41.667
0.00
0.00
37.09
3.53
2020
5292
1.291877
CGAACCGTTGCTCCCTTCTG
61.292
60.000
0.00
0.00
0.00
3.02
2039
5320
0.251341
GGTGCCCTCTTGGATGTGTT
60.251
55.000
0.00
0.00
35.39
3.32
2040
5321
1.168714
GTGCCCTCTTGGATGTGTTC
58.831
55.000
0.00
0.00
35.39
3.18
2146
5427
1.409427
GCAAGGAGGTACATAGAGCGT
59.591
52.381
0.00
0.00
0.00
5.07
2229
5510
8.023128
GCACATTTAGTCATGAACACTAAACAT
58.977
33.333
16.28
8.19
44.97
2.71
2488
5932
0.958382
GTGTGGGTGTGTGTGTGTGT
60.958
55.000
0.00
0.00
0.00
3.72
2490
5934
0.958382
GTGGGTGTGTGTGTGTGTGT
60.958
55.000
0.00
0.00
0.00
3.72
2491
5935
0.957888
TGGGTGTGTGTGTGTGTGTG
60.958
55.000
0.00
0.00
0.00
3.82
2492
5936
0.958382
GGGTGTGTGTGTGTGTGTGT
60.958
55.000
0.00
0.00
0.00
3.72
2493
5937
0.167908
GGTGTGTGTGTGTGTGTGTG
59.832
55.000
0.00
0.00
0.00
3.82
2494
5938
0.871722
GTGTGTGTGTGTGTGTGTGT
59.128
50.000
0.00
0.00
0.00
3.72
2625
6080
3.995199
TGGACAGCTAGAGTTGAAGTTG
58.005
45.455
0.00
0.00
0.00
3.16
2660
6117
0.978907
TGCTCCTCTTGTGCTCATCA
59.021
50.000
0.00
0.00
34.56
3.07
2777
6234
4.624882
GCATAATCAAATGGCGTCAAAACA
59.375
37.500
0.00
0.00
0.00
2.83
2863
6320
2.557924
GCTGGATGTGTTGGATTGTTCA
59.442
45.455
0.00
0.00
0.00
3.18
2877
6334
4.565652
GGATTGTTCAGTCAGGGTGTATGT
60.566
45.833
0.00
0.00
0.00
2.29
2910
6367
2.292103
TTGTGCTTGTGCCAAAACTC
57.708
45.000
0.00
0.00
38.71
3.01
2916
6373
1.939934
CTTGTGCCAAAACTCGAGTCA
59.060
47.619
20.33
9.28
0.00
3.41
2961
6418
4.487948
CAGCAGGGTATTGATGTGTTTTG
58.512
43.478
0.00
0.00
30.17
2.44
3065
6522
8.707796
TTTTAAGGAGACGGAGATATCTATGT
57.292
34.615
4.89
7.13
0.00
2.29
3067
6524
8.789825
TTAAGGAGACGGAGATATCTATGTAC
57.210
38.462
4.89
5.37
0.00
2.90
3068
6525
6.630203
AGGAGACGGAGATATCTATGTACT
57.370
41.667
4.89
6.81
0.00
2.73
3069
6526
7.736881
AGGAGACGGAGATATCTATGTACTA
57.263
40.000
4.89
0.00
0.00
1.82
3070
6527
8.148437
AGGAGACGGAGATATCTATGTACTAA
57.852
38.462
4.89
0.00
0.00
2.24
3157
6614
2.849942
AGGCAAGCCCATTTTTGTTTC
58.150
42.857
7.62
0.00
36.58
2.78
3190
6648
9.775854
TGTGGTTTCATAAATTTGATCAACATT
57.224
25.926
7.89
8.73
0.00
2.71
3201
6659
2.610833
TGATCAACATTGAGATGCGAGC
59.389
45.455
0.00
0.00
41.08
5.03
3216
6674
1.914634
CGAGCAAGACTAGCGATTGT
58.085
50.000
0.00
0.00
37.01
2.71
3230
6688
3.941483
AGCGATTGTTTATTGGTGGAGAG
59.059
43.478
0.00
0.00
0.00
3.20
3231
6689
3.487544
GCGATTGTTTATTGGTGGAGAGC
60.488
47.826
0.00
0.00
0.00
4.09
3232
6690
3.242413
CGATTGTTTATTGGTGGAGAGCG
60.242
47.826
0.00
0.00
0.00
5.03
3233
6691
3.410631
TTGTTTATTGGTGGAGAGCGA
57.589
42.857
0.00
0.00
0.00
4.93
3234
6692
2.695359
TGTTTATTGGTGGAGAGCGAC
58.305
47.619
0.00
0.00
0.00
5.19
3235
6693
1.659098
GTTTATTGGTGGAGAGCGACG
59.341
52.381
0.00
0.00
0.00
5.12
3236
6694
0.174845
TTATTGGTGGAGAGCGACGG
59.825
55.000
0.00
0.00
0.00
4.79
3237
6695
0.681887
TATTGGTGGAGAGCGACGGA
60.682
55.000
0.00
0.00
0.00
4.69
3240
6698
2.179517
GTGGAGAGCGACGGACAG
59.820
66.667
0.00
0.00
0.00
3.51
3241
6699
3.749064
TGGAGAGCGACGGACAGC
61.749
66.667
0.00
0.00
0.00
4.40
3242
6700
4.500116
GGAGAGCGACGGACAGCC
62.500
72.222
0.00
0.00
0.00
4.85
3243
6701
3.444805
GAGAGCGACGGACAGCCT
61.445
66.667
0.00
0.00
0.00
4.58
3256
6721
2.424956
GGACAGCCTCCAATGACATTTC
59.575
50.000
0.00
0.00
39.21
2.17
3336
6804
6.633500
TCCTCAACAAATCTTTTGTACCAG
57.367
37.500
6.09
3.46
31.50
4.00
3360
6828
1.896220
ATCAATTGGAGTGTGTGCGT
58.104
45.000
5.42
0.00
0.00
5.24
3387
6862
5.714047
CACTGCATGTGTTAGAGTTAGAGA
58.286
41.667
7.80
0.00
41.53
3.10
3388
6863
6.336566
CACTGCATGTGTTAGAGTTAGAGAT
58.663
40.000
7.80
0.00
41.53
2.75
3389
6864
7.484140
CACTGCATGTGTTAGAGTTAGAGATA
58.516
38.462
7.80
0.00
41.53
1.98
3390
6865
7.433719
CACTGCATGTGTTAGAGTTAGAGATAC
59.566
40.741
7.80
0.00
41.53
2.24
3432
6907
3.744660
AGATCGAATCAAACATAGGGGC
58.255
45.455
0.00
0.00
0.00
5.80
3485
6973
1.304134
GAAAGGGGACGCCAACCAT
60.304
57.895
11.67
0.00
0.00
3.55
3507
6995
9.613428
ACCATCGAAAATTCACTATATCAAGAA
57.387
29.630
0.00
0.00
0.00
2.52
3533
7023
7.175104
AGATTACAAATGCCGGGATATACAAT
58.825
34.615
9.63
7.16
0.00
2.71
3555
7045
5.670792
TTGATCAACTTATCCCGTGTAGT
57.329
39.130
3.38
0.00
0.00
2.73
3565
7055
1.693062
TCCCGTGTAGTGGCTTACAAA
59.307
47.619
4.42
0.00
35.47
2.83
3566
7056
2.073816
CCCGTGTAGTGGCTTACAAAG
58.926
52.381
4.42
3.11
35.47
2.77
3567
7057
2.073816
CCGTGTAGTGGCTTACAAAGG
58.926
52.381
4.42
7.28
35.47
3.11
3568
7058
2.289195
CCGTGTAGTGGCTTACAAAGGA
60.289
50.000
14.34
0.00
36.50
3.36
3569
7059
3.596214
CGTGTAGTGGCTTACAAAGGAT
58.404
45.455
4.42
0.00
35.47
3.24
3570
7060
4.382254
CCGTGTAGTGGCTTACAAAGGATA
60.382
45.833
14.34
0.00
36.50
2.59
3571
7061
5.357257
CGTGTAGTGGCTTACAAAGGATAT
58.643
41.667
4.42
0.00
35.47
1.63
3572
7062
6.461927
CCGTGTAGTGGCTTACAAAGGATATA
60.462
42.308
14.34
0.00
36.50
0.86
3573
7063
7.152645
CGTGTAGTGGCTTACAAAGGATATAT
58.847
38.462
4.42
0.00
35.47
0.86
3574
7064
7.328737
CGTGTAGTGGCTTACAAAGGATATATC
59.671
40.741
3.96
3.96
35.47
1.63
3575
7065
7.603024
GTGTAGTGGCTTACAAAGGATATATCC
59.397
40.741
22.33
22.33
39.88
2.59
3592
7082
2.125773
TCCTACTGGGAGACTTCGAC
57.874
55.000
0.00
0.00
39.58
4.20
3593
7083
1.353358
TCCTACTGGGAGACTTCGACA
59.647
52.381
0.00
0.00
39.58
4.35
3594
7084
2.025226
TCCTACTGGGAGACTTCGACAT
60.025
50.000
0.00
0.00
39.58
3.06
3595
7085
2.099921
CCTACTGGGAGACTTCGACATG
59.900
54.545
0.00
0.00
37.23
3.21
3596
7086
1.633774
ACTGGGAGACTTCGACATGT
58.366
50.000
0.00
0.00
0.00
3.21
3597
7087
2.803956
ACTGGGAGACTTCGACATGTA
58.196
47.619
0.00
0.00
0.00
2.29
3598
7088
2.492484
ACTGGGAGACTTCGACATGTAC
59.508
50.000
0.00
0.00
0.00
2.90
3599
7089
2.492088
CTGGGAGACTTCGACATGTACA
59.508
50.000
0.00
0.00
0.00
2.90
3600
7090
2.492088
TGGGAGACTTCGACATGTACAG
59.508
50.000
0.00
0.00
0.00
2.74
3601
7091
2.753452
GGGAGACTTCGACATGTACAGA
59.247
50.000
0.00
0.00
0.00
3.41
3602
7092
3.381908
GGGAGACTTCGACATGTACAGAT
59.618
47.826
0.00
0.00
0.00
2.90
3603
7093
4.142138
GGGAGACTTCGACATGTACAGATT
60.142
45.833
0.00
0.00
0.00
2.40
3604
7094
5.411781
GGAGACTTCGACATGTACAGATTT
58.588
41.667
0.00
0.00
0.00
2.17
3605
7095
5.289675
GGAGACTTCGACATGTACAGATTTG
59.710
44.000
0.00
0.00
0.00
2.32
3606
7096
5.171476
AGACTTCGACATGTACAGATTTGG
58.829
41.667
0.00
0.00
0.00
3.28
3607
7097
4.894784
ACTTCGACATGTACAGATTTGGT
58.105
39.130
0.00
0.00
0.00
3.67
3608
7098
4.929808
ACTTCGACATGTACAGATTTGGTC
59.070
41.667
0.00
1.69
0.00
4.02
3609
7099
4.529109
TCGACATGTACAGATTTGGTCA
57.471
40.909
0.00
0.00
0.00
4.02
3610
7100
4.242475
TCGACATGTACAGATTTGGTCAC
58.758
43.478
0.00
0.00
0.00
3.67
3611
7101
3.060761
CGACATGTACAGATTTGGTCACG
59.939
47.826
0.00
0.00
0.00
4.35
3612
7102
4.242475
GACATGTACAGATTTGGTCACGA
58.758
43.478
0.00
0.00
0.00
4.35
3613
7103
4.245660
ACATGTACAGATTTGGTCACGAG
58.754
43.478
0.00
0.00
0.00
4.18
3614
7104
4.021456
ACATGTACAGATTTGGTCACGAGA
60.021
41.667
0.00
0.00
0.00
4.04
3615
7105
4.594123
TGTACAGATTTGGTCACGAGAA
57.406
40.909
0.00
0.00
0.00
2.87
3616
7106
4.951254
TGTACAGATTTGGTCACGAGAAA
58.049
39.130
0.00
0.00
0.00
2.52
3617
7107
5.547465
TGTACAGATTTGGTCACGAGAAAT
58.453
37.500
0.00
0.00
0.00
2.17
3618
7108
5.637810
TGTACAGATTTGGTCACGAGAAATC
59.362
40.000
0.00
0.00
36.67
2.17
3619
7109
4.641396
ACAGATTTGGTCACGAGAAATCA
58.359
39.130
0.00
0.00
38.17
2.57
3620
7110
5.063204
ACAGATTTGGTCACGAGAAATCAA
58.937
37.500
0.00
1.16
38.17
2.57
3621
7111
5.180117
ACAGATTTGGTCACGAGAAATCAAG
59.820
40.000
0.00
0.00
38.17
3.02
3622
7112
4.697352
AGATTTGGTCACGAGAAATCAAGG
59.303
41.667
0.00
0.00
38.17
3.61
3623
7113
2.472695
TGGTCACGAGAAATCAAGGG
57.527
50.000
0.00
0.00
0.00
3.95
3624
7114
1.003118
TGGTCACGAGAAATCAAGGGG
59.997
52.381
0.00
0.00
0.00
4.79
3625
7115
1.278127
GGTCACGAGAAATCAAGGGGA
59.722
52.381
0.00
0.00
0.00
4.81
3626
7116
2.347731
GTCACGAGAAATCAAGGGGAC
58.652
52.381
0.00
0.00
0.00
4.46
3627
7117
1.974957
TCACGAGAAATCAAGGGGACA
59.025
47.619
0.00
0.00
0.00
4.02
3628
7118
2.076863
CACGAGAAATCAAGGGGACAC
58.923
52.381
0.00
0.00
0.00
3.67
3629
7119
1.697432
ACGAGAAATCAAGGGGACACA
59.303
47.619
0.00
0.00
0.00
3.72
3630
7120
2.105821
ACGAGAAATCAAGGGGACACAA
59.894
45.455
0.00
0.00
0.00
3.33
3631
7121
2.744202
CGAGAAATCAAGGGGACACAAG
59.256
50.000
0.00
0.00
0.00
3.16
3632
7122
3.557054
CGAGAAATCAAGGGGACACAAGA
60.557
47.826
0.00
0.00
0.00
3.02
3633
7123
4.398319
GAGAAATCAAGGGGACACAAGAA
58.602
43.478
0.00
0.00
0.00
2.52
3634
7124
4.145052
AGAAATCAAGGGGACACAAGAAC
58.855
43.478
0.00
0.00
0.00
3.01
3635
7125
3.884037
AATCAAGGGGACACAAGAACT
57.116
42.857
0.00
0.00
0.00
3.01
3636
7126
2.638480
TCAAGGGGACACAAGAACTG
57.362
50.000
0.00
0.00
0.00
3.16
3637
7127
1.142870
TCAAGGGGACACAAGAACTGG
59.857
52.381
0.00
0.00
0.00
4.00
3638
7128
0.478507
AAGGGGACACAAGAACTGGG
59.521
55.000
0.00
0.00
0.00
4.45
3640
7130
0.185175
GGGGACACAAGAACTGGGTT
59.815
55.000
0.00
0.00
43.76
4.11
3641
7131
1.318576
GGGACACAAGAACTGGGTTG
58.681
55.000
0.00
0.00
43.76
3.77
3642
7132
1.409661
GGGACACAAGAACTGGGTTGT
60.410
52.381
0.00
0.00
43.76
3.32
3647
7137
2.586425
ACAAGAACTGGGTTGTGATGG
58.414
47.619
0.00
0.00
35.55
3.51
3648
7138
2.174639
ACAAGAACTGGGTTGTGATGGA
59.825
45.455
0.00
0.00
35.55
3.41
3649
7139
3.221771
CAAGAACTGGGTTGTGATGGAA
58.778
45.455
0.00
0.00
0.00
3.53
3650
7140
3.593442
AGAACTGGGTTGTGATGGAAA
57.407
42.857
0.00
0.00
0.00
3.13
3651
7141
3.490348
AGAACTGGGTTGTGATGGAAAG
58.510
45.455
0.00
0.00
0.00
2.62
3652
7142
3.117512
AGAACTGGGTTGTGATGGAAAGT
60.118
43.478
0.00
0.00
0.00
2.66
3653
7143
3.312736
ACTGGGTTGTGATGGAAAGTT
57.687
42.857
0.00
0.00
0.00
2.66
3654
7144
3.642141
ACTGGGTTGTGATGGAAAGTTT
58.358
40.909
0.00
0.00
0.00
2.66
3655
7145
4.030216
ACTGGGTTGTGATGGAAAGTTTT
58.970
39.130
0.00
0.00
0.00
2.43
3656
7146
5.205056
ACTGGGTTGTGATGGAAAGTTTTA
58.795
37.500
0.00
0.00
0.00
1.52
3657
7147
5.659079
ACTGGGTTGTGATGGAAAGTTTTAA
59.341
36.000
0.00
0.00
0.00
1.52
3658
7148
6.326323
ACTGGGTTGTGATGGAAAGTTTTAAT
59.674
34.615
0.00
0.00
0.00
1.40
3659
7149
7.507616
ACTGGGTTGTGATGGAAAGTTTTAATA
59.492
33.333
0.00
0.00
0.00
0.98
3660
7150
8.251383
TGGGTTGTGATGGAAAGTTTTAATAA
57.749
30.769
0.00
0.00
0.00
1.40
3661
7151
8.875168
TGGGTTGTGATGGAAAGTTTTAATAAT
58.125
29.630
0.00
0.00
0.00
1.28
3662
7152
9.719355
GGGTTGTGATGGAAAGTTTTAATAATT
57.281
29.630
0.00
0.00
0.00
1.40
3669
7159
9.463443
GATGGAAAGTTTTAATAATTGGATCCG
57.537
33.333
7.39
0.00
0.00
4.18
3670
7160
7.777095
TGGAAAGTTTTAATAATTGGATCCGG
58.223
34.615
7.39
0.00
0.00
5.14
3671
7161
7.147811
TGGAAAGTTTTAATAATTGGATCCGGG
60.148
37.037
7.39
0.00
0.00
5.73
3672
7162
7.068962
GGAAAGTTTTAATAATTGGATCCGGGA
59.931
37.037
7.39
0.00
0.00
5.14
3673
7163
6.954487
AGTTTTAATAATTGGATCCGGGAC
57.046
37.500
7.39
0.00
0.00
4.46
3674
7164
6.428295
AGTTTTAATAATTGGATCCGGGACA
58.572
36.000
7.39
0.00
0.00
4.02
3675
7165
6.893005
AGTTTTAATAATTGGATCCGGGACAA
59.107
34.615
7.39
5.14
0.00
3.18
3676
7166
7.563556
AGTTTTAATAATTGGATCCGGGACAAT
59.436
33.333
7.39
7.49
36.46
2.71
3677
7167
6.892658
TTAATAATTGGATCCGGGACAATG
57.107
37.500
16.24
0.00
35.22
2.82
3678
7168
1.402787
AATTGGATCCGGGACAATGC
58.597
50.000
16.24
3.18
35.22
3.56
3679
7169
0.552848
ATTGGATCCGGGACAATGCT
59.447
50.000
15.22
0.00
33.87
3.79
3680
7170
1.208706
TTGGATCCGGGACAATGCTA
58.791
50.000
7.39
0.00
0.00
3.49
3681
7171
1.434188
TGGATCCGGGACAATGCTAT
58.566
50.000
7.39
0.00
0.00
2.97
3682
7172
1.072173
TGGATCCGGGACAATGCTATG
59.928
52.381
7.39
0.00
0.00
2.23
3683
7173
1.611673
GGATCCGGGACAATGCTATGG
60.612
57.143
0.00
0.00
0.00
2.74
3684
7174
1.347707
GATCCGGGACAATGCTATGGA
59.652
52.381
0.00
0.00
0.00
3.41
3685
7175
1.434188
TCCGGGACAATGCTATGGAT
58.566
50.000
0.00
0.00
0.00
3.41
3686
7176
1.072173
TCCGGGACAATGCTATGGATG
59.928
52.381
0.00
0.00
0.00
3.51
3687
7177
1.072173
CCGGGACAATGCTATGGATGA
59.928
52.381
0.00
0.00
0.00
2.92
3688
7178
2.146342
CGGGACAATGCTATGGATGAC
58.854
52.381
0.00
0.00
0.00
3.06
3689
7179
2.485302
CGGGACAATGCTATGGATGACA
60.485
50.000
0.00
0.00
0.00
3.58
3690
7180
3.759581
GGGACAATGCTATGGATGACAT
58.240
45.455
0.00
0.00
43.68
3.06
3691
7181
3.755378
GGGACAATGCTATGGATGACATC
59.245
47.826
6.91
6.91
41.03
3.06
3692
7182
3.434641
GGACAATGCTATGGATGACATCG
59.565
47.826
9.31
0.00
41.03
3.84
3693
7183
4.309933
GACAATGCTATGGATGACATCGA
58.690
43.478
9.31
5.97
41.03
3.59
3694
7184
4.903054
ACAATGCTATGGATGACATCGAT
58.097
39.130
16.03
16.03
41.03
3.59
3695
7185
4.694037
ACAATGCTATGGATGACATCGATG
59.306
41.667
23.68
23.68
41.03
3.84
3696
7186
4.548451
ATGCTATGGATGACATCGATGT
57.452
40.909
30.37
30.37
45.16
3.06
3707
7197
2.699954
ACATCGATGTCTCCAACCAAC
58.300
47.619
25.18
0.00
35.87
3.77
3708
7198
2.038426
ACATCGATGTCTCCAACCAACA
59.962
45.455
25.18
0.00
35.87
3.33
3709
7199
2.455674
TCGATGTCTCCAACCAACAG
57.544
50.000
0.00
0.00
0.00
3.16
3710
7200
1.691976
TCGATGTCTCCAACCAACAGT
59.308
47.619
0.00
0.00
0.00
3.55
3711
7201
2.104111
TCGATGTCTCCAACCAACAGTT
59.896
45.455
0.00
0.00
40.16
3.16
3712
7202
2.480419
CGATGTCTCCAACCAACAGTTC
59.520
50.000
0.00
0.00
36.18
3.01
3713
7203
3.476552
GATGTCTCCAACCAACAGTTCA
58.523
45.455
0.00
0.00
36.18
3.18
3714
7204
2.639065
TGTCTCCAACCAACAGTTCAC
58.361
47.619
0.00
0.00
36.18
3.18
3715
7205
2.238646
TGTCTCCAACCAACAGTTCACT
59.761
45.455
0.00
0.00
36.18
3.41
3716
7206
3.279434
GTCTCCAACCAACAGTTCACTT
58.721
45.455
0.00
0.00
36.18
3.16
3717
7207
3.065371
GTCTCCAACCAACAGTTCACTTG
59.935
47.826
0.00
0.00
36.18
3.16
3718
7208
2.358898
CTCCAACCAACAGTTCACTTGG
59.641
50.000
6.75
6.75
42.45
3.61
3721
7211
1.663695
ACCAACAGTTCACTTGGTCG
58.336
50.000
0.00
0.00
45.94
4.79
3722
7212
0.944386
CCAACAGTTCACTTGGTCGG
59.056
55.000
0.00
0.00
33.46
4.79
3723
7213
1.474320
CCAACAGTTCACTTGGTCGGA
60.474
52.381
0.00
0.00
33.46
4.55
3724
7214
1.597663
CAACAGTTCACTTGGTCGGAC
59.402
52.381
0.00
0.00
0.00
4.79
3725
7215
0.828022
ACAGTTCACTTGGTCGGACA
59.172
50.000
10.76
0.00
0.00
4.02
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
15
16
8.627208
ACATATGTGAACTTCAGATCAAAGTT
57.373
30.769
20.11
20.11
46.74
2.66
42
43
1.616628
ACCCCTCCCAACCAGCTAG
60.617
63.158
0.00
0.00
0.00
3.42
44
45
2.936032
GACCCCTCCCAACCAGCT
60.936
66.667
0.00
0.00
0.00
4.24
127
128
3.584848
AGCATCTCCAAGGTAGAACTTGT
59.415
43.478
6.57
0.00
44.89
3.16
163
164
0.179702
GGGTGGAAGAATACCCGACC
59.820
60.000
0.00
0.00
46.42
4.79
243
244
3.317455
TTATGGGTAGAACGGCTCCTA
57.683
47.619
0.00
0.00
0.00
2.94
251
342
4.409247
ACCTGAGTGGATTATGGGTAGAAC
59.591
45.833
0.00
0.00
39.71
3.01
255
346
6.445786
AGTTTAACCTGAGTGGATTATGGGTA
59.554
38.462
0.00
0.00
39.71
3.69
263
354
5.941788
AGAACAAGTTTAACCTGAGTGGAT
58.058
37.500
0.26
0.00
39.71
3.41
278
369
6.498304
CAGAATGCAACAAGTAAGAACAAGT
58.502
36.000
0.00
0.00
0.00
3.16
310
401
0.035056
AAAGCCCCACTGAAGGATCG
60.035
55.000
0.00
0.00
0.00
3.69
317
408
0.322816
GCTCATCAAAGCCCCACTGA
60.323
55.000
0.00
0.00
36.22
3.41
335
426
0.747283
CTTCCTCCTCAGGCATGTGC
60.747
60.000
0.00
0.00
40.12
4.57
339
430
0.043940
ACCTCTTCCTCCTCAGGCAT
59.956
55.000
0.00
0.00
40.12
4.40
391
722
4.940046
ACAAATGACAGCTCATCCTAACTG
59.060
41.667
0.00
0.00
35.96
3.16
499
830
6.571344
GCACATATGACATTGGTGTTTGGTTA
60.571
38.462
10.38
0.00
39.09
2.85
511
842
3.058016
GCATTAGGCGCACATATGACATT
60.058
43.478
10.83
0.00
0.00
2.71
552
883
5.004361
TGAGATAACCATTTTTGACCCCA
57.996
39.130
0.00
0.00
0.00
4.96
553
884
5.682212
GCATGAGATAACCATTTTTGACCCC
60.682
44.000
0.00
0.00
0.00
4.95
569
900
4.818546
GCATGTACCTTAGTTGCATGAGAT
59.181
41.667
11.46
0.00
38.96
2.75
625
956
1.304381
TTTGAGGGGATGCAGGCAC
60.304
57.895
0.00
0.00
0.00
5.01
706
1037
6.681541
ACCATAAGGACCCCTAAAAGAACTAT
59.318
38.462
0.00
0.00
38.69
2.12
714
1045
2.937442
ACCACCATAAGGACCCCTAAA
58.063
47.619
0.00
0.00
38.69
1.85
715
1046
2.672703
ACCACCATAAGGACCCCTAA
57.327
50.000
0.00
0.00
38.69
2.69
716
1047
4.758283
GCTATACCACCATAAGGACCCCTA
60.758
50.000
0.00
0.00
38.69
3.53
717
1048
2.910360
ATACCACCATAAGGACCCCT
57.090
50.000
0.00
0.00
38.69
4.79
719
1050
3.248888
AGCTATACCACCATAAGGACCC
58.751
50.000
0.00
0.00
38.69
4.46
720
1051
4.976540
AAGCTATACCACCATAAGGACC
57.023
45.455
0.00
0.00
38.69
4.46
742
1073
5.458508
GCTATACCCCATAAGCCCCTAAAAA
60.459
44.000
0.00
0.00
0.00
1.94
743
1074
4.043686
GCTATACCCCATAAGCCCCTAAAA
59.956
45.833
0.00
0.00
0.00
1.52
744
1075
3.590182
GCTATACCCCATAAGCCCCTAAA
59.410
47.826
0.00
0.00
0.00
1.85
745
1076
3.181388
AGCTATACCCCATAAGCCCCTAA
60.181
47.826
0.00
0.00
0.00
2.69
746
1077
2.389267
AGCTATACCCCATAAGCCCCTA
59.611
50.000
0.00
0.00
0.00
3.53
747
1078
1.154434
AGCTATACCCCATAAGCCCCT
59.846
52.381
0.00
0.00
0.00
4.79
748
1079
1.282157
CAGCTATACCCCATAAGCCCC
59.718
57.143
0.00
0.00
0.00
5.80
749
1080
1.985895
ACAGCTATACCCCATAAGCCC
59.014
52.381
0.00
0.00
0.00
5.19
750
1081
3.838903
AGTACAGCTATACCCCATAAGCC
59.161
47.826
0.00
0.00
0.00
4.35
752
1083
6.249951
AGAGAGTACAGCTATACCCCATAAG
58.750
44.000
0.00
0.00
0.00
1.73
753
1084
6.215515
AGAGAGTACAGCTATACCCCATAA
57.784
41.667
0.00
0.00
0.00
1.90
754
1085
5.281089
GGAGAGAGTACAGCTATACCCCATA
60.281
48.000
0.00
0.00
0.00
2.74
756
1087
3.181431
GGAGAGAGTACAGCTATACCCCA
60.181
52.174
0.00
0.00
0.00
4.96
757
1088
3.074836
AGGAGAGAGTACAGCTATACCCC
59.925
52.174
0.00
0.00
0.00
4.95
758
1089
4.376225
AGGAGAGAGTACAGCTATACCC
57.624
50.000
0.00
0.00
0.00
3.69
877
1208
2.589442
TTTCTGCGGTTCGGCGTT
60.589
55.556
6.85
0.00
35.06
4.84
882
1213
2.281208
TGGGGTTTCTGCGGTTCG
60.281
61.111
0.00
0.00
0.00
3.95
1422
4629
1.154073
GTAGGTGACGAGGTCGCAC
60.154
63.158
14.55
14.55
43.87
5.34
1470
4677
0.392327
TCCAGATGATTTCCGCGCAA
60.392
50.000
8.75
0.00
0.00
4.85
1497
4704
1.134068
TCCTCCTCATCGTCGTCATCT
60.134
52.381
0.00
0.00
0.00
2.90
1503
4713
1.644372
CTCGTCCTCCTCATCGTCG
59.356
63.158
0.00
0.00
0.00
5.12
1645
4879
4.051922
GAGTATACGGATGCAAAGGTGAG
58.948
47.826
0.00
0.00
0.00
3.51
1775
5015
8.208224
TGTACTCCACAATACTTTGGGTATATG
58.792
37.037
0.00
0.00
39.94
1.78
1825
5065
8.229253
TCATCTTCAAATATTGGACCAATCAG
57.771
34.615
23.11
11.46
35.54
2.90
1848
5088
1.957177
GTCGGCATGTCCTCTCTATCA
59.043
52.381
0.00
0.00
0.00
2.15
1853
5093
0.179000
AATGGTCGGCATGTCCTCTC
59.821
55.000
0.00
0.00
0.00
3.20
1854
5094
0.107508
CAATGGTCGGCATGTCCTCT
60.108
55.000
0.00
0.00
0.00
3.69
1863
5103
1.097547
CCATGAGGTCAATGGTCGGC
61.098
60.000
0.00
0.00
0.00
5.54
1867
5107
1.216175
CATCCCCATGAGGTCAATGGT
59.784
52.381
0.00
0.00
33.75
3.55
2039
5320
1.403679
CTTCTGCAAAACCAACCACGA
59.596
47.619
0.00
0.00
0.00
4.35
2040
5321
1.535860
CCTTCTGCAAAACCAACCACG
60.536
52.381
0.00
0.00
0.00
4.94
2146
5427
4.460382
GGGCATGACTCTTTTGAAAGATGA
59.540
41.667
0.00
0.00
43.52
2.92
2229
5510
4.868171
CGTAGTTAAAGCTAGTGAATGGCA
59.132
41.667
0.00
0.00
38.00
4.92
2331
5612
2.894126
CTCTACATGCTCCCTCCGTAAT
59.106
50.000
0.00
0.00
0.00
1.89
2492
5936
1.868498
GCGTAAGTGTTTAGTGGCACA
59.132
47.619
21.41
2.83
38.02
4.57
2493
5937
1.868498
TGCGTAAGTGTTTAGTGGCAC
59.132
47.619
10.29
10.29
41.68
5.01
2494
5938
2.242047
TGCGTAAGTGTTTAGTGGCA
57.758
45.000
0.00
0.00
41.68
4.92
2576
6020
2.549992
CCAAGAACATCCACAGAACGGA
60.550
50.000
0.00
0.00
36.84
4.69
2625
6080
2.552743
GGAGCACACTTTGTCCCTTAAC
59.447
50.000
0.00
0.00
0.00
2.01
2660
6117
9.240734
AGAAAACAAAGCTTCATAAGATGATCT
57.759
29.630
0.00
0.00
39.39
2.75
2755
6212
6.702972
TTGTTTTGACGCCATTTGATTATG
57.297
33.333
0.00
0.00
0.00
1.90
2777
6234
4.312443
CAGCAAAAGCAAACAGATCCATT
58.688
39.130
0.00
0.00
0.00
3.16
2863
6320
3.149196
CAAAAGCACATACACCCTGACT
58.851
45.455
0.00
0.00
0.00
3.41
2877
6334
3.591196
AGCACAAACAGAACAAAAGCA
57.409
38.095
0.00
0.00
0.00
3.91
2910
6367
1.723542
GACACAATGACTGCTGACTCG
59.276
52.381
0.00
0.00
0.00
4.18
2916
6373
2.224185
TGTTACGGACACAATGACTGCT
60.224
45.455
0.00
0.00
32.00
4.24
2951
6408
7.035612
CCTTAATTCCTTAGGCAAAACACATC
58.964
38.462
0.00
0.00
0.00
3.06
2961
6418
6.660800
ACTTCCTTACCTTAATTCCTTAGGC
58.339
40.000
0.00
0.00
0.00
3.93
3065
6522
6.350194
CGACATAGCCCAGCTGATTATTAGTA
60.350
42.308
17.39
0.00
40.10
1.82
3067
6524
4.867047
CGACATAGCCCAGCTGATTATTAG
59.133
45.833
17.39
1.79
40.10
1.73
3068
6525
4.526650
TCGACATAGCCCAGCTGATTATTA
59.473
41.667
17.39
0.58
40.10
0.98
3069
6526
3.324846
TCGACATAGCCCAGCTGATTATT
59.675
43.478
17.39
0.00
40.10
1.40
3070
6527
2.899900
TCGACATAGCCCAGCTGATTAT
59.100
45.455
17.39
7.01
40.10
1.28
3117
6574
2.162319
TCGAGCACTTGCACAATACA
57.838
45.000
3.62
0.00
45.16
2.29
3157
6614
9.734620
ATCAAATTTATGAAACCACATATCACG
57.265
29.630
0.00
0.00
33.60
4.35
3190
6648
1.202348
GCTAGTCTTGCTCGCATCTCA
60.202
52.381
0.00
0.00
36.11
3.27
3201
6659
6.250819
CACCAATAAACAATCGCTAGTCTTG
58.749
40.000
0.00
0.00
0.00
3.02
3216
6674
1.404986
CCGTCGCTCTCCACCAATAAA
60.405
52.381
0.00
0.00
0.00
1.40
3236
6694
2.096496
CGAAATGTCATTGGAGGCTGTC
59.904
50.000
0.00
0.00
0.00
3.51
3237
6695
2.086869
CGAAATGTCATTGGAGGCTGT
58.913
47.619
0.00
0.00
0.00
4.40
3240
6698
2.083774
TGTCGAAATGTCATTGGAGGC
58.916
47.619
0.00
0.00
0.00
4.70
3241
6699
6.624352
ATTATGTCGAAATGTCATTGGAGG
57.376
37.500
0.00
0.00
0.00
4.30
3242
6700
7.696755
TCAATTATGTCGAAATGTCATTGGAG
58.303
34.615
13.15
0.00
0.00
3.86
3243
6701
7.552330
TCTCAATTATGTCGAAATGTCATTGGA
59.448
33.333
13.15
0.00
0.00
3.53
3280
6745
4.819105
TTCCACGGTAACTCAATGAGAT
57.181
40.909
18.20
7.86
33.32
2.75
3336
6804
3.612479
GCACACACTCCAATTGATTGTCC
60.612
47.826
7.12
0.00
34.90
4.02
3381
6856
5.654603
TTTCTTGCCTGTCGTATCTCTAA
57.345
39.130
0.00
0.00
0.00
2.10
3384
6859
3.060895
CGTTTTCTTGCCTGTCGTATCTC
59.939
47.826
0.00
0.00
0.00
2.75
3385
6860
2.993899
CGTTTTCTTGCCTGTCGTATCT
59.006
45.455
0.00
0.00
0.00
1.98
3386
6861
2.991190
TCGTTTTCTTGCCTGTCGTATC
59.009
45.455
0.00
0.00
0.00
2.24
3387
6862
2.993899
CTCGTTTTCTTGCCTGTCGTAT
59.006
45.455
0.00
0.00
0.00
3.06
3388
6863
2.400399
CTCGTTTTCTTGCCTGTCGTA
58.600
47.619
0.00
0.00
0.00
3.43
3389
6864
1.217882
CTCGTTTTCTTGCCTGTCGT
58.782
50.000
0.00
0.00
0.00
4.34
3390
6865
0.512952
CCTCGTTTTCTTGCCTGTCG
59.487
55.000
0.00
0.00
0.00
4.35
3432
6907
5.120053
GGTTTTCCATGTAAAAATCTTGCGG
59.880
40.000
0.00
0.00
40.31
5.69
3507
6995
6.539173
TGTATATCCCGGCATTTGTAATCTT
58.461
36.000
0.00
0.00
0.00
2.40
3533
7023
5.416083
CACTACACGGGATAAGTTGATCAA
58.584
41.667
3.38
3.38
0.00
2.57
3566
7056
5.591067
CGAAGTCTCCCAGTAGGATATATCC
59.409
48.000
22.33
22.33
46.33
2.59
3567
7057
6.316890
GTCGAAGTCTCCCAGTAGGATATATC
59.683
46.154
3.96
3.96
46.33
1.63
3568
7058
6.181908
GTCGAAGTCTCCCAGTAGGATATAT
58.818
44.000
0.00
0.00
46.33
0.86
3569
7059
5.072736
TGTCGAAGTCTCCCAGTAGGATATA
59.927
44.000
0.00
0.00
46.33
0.86
3570
7060
4.141228
TGTCGAAGTCTCCCAGTAGGATAT
60.141
45.833
0.00
0.00
46.33
1.63
3571
7061
3.201487
TGTCGAAGTCTCCCAGTAGGATA
59.799
47.826
0.00
0.00
46.33
2.59
3572
7062
2.025226
TGTCGAAGTCTCCCAGTAGGAT
60.025
50.000
0.00
0.00
46.33
3.24
3573
7063
1.353358
TGTCGAAGTCTCCCAGTAGGA
59.647
52.381
0.00
0.00
44.91
2.94
3574
7064
1.835494
TGTCGAAGTCTCCCAGTAGG
58.165
55.000
0.00
0.00
0.00
3.18
3575
7065
2.755655
ACATGTCGAAGTCTCCCAGTAG
59.244
50.000
0.00
0.00
0.00
2.57
3576
7066
2.803956
ACATGTCGAAGTCTCCCAGTA
58.196
47.619
0.00
0.00
0.00
2.74
3577
7067
1.633774
ACATGTCGAAGTCTCCCAGT
58.366
50.000
0.00
0.00
0.00
4.00
3578
7068
2.492088
TGTACATGTCGAAGTCTCCCAG
59.508
50.000
0.00
0.00
0.00
4.45
3579
7069
2.492088
CTGTACATGTCGAAGTCTCCCA
59.508
50.000
0.00
0.00
0.00
4.37
3580
7070
2.753452
TCTGTACATGTCGAAGTCTCCC
59.247
50.000
0.00
0.00
0.00
4.30
3581
7071
4.640789
ATCTGTACATGTCGAAGTCTCC
57.359
45.455
0.00
0.00
0.00
3.71
3582
7072
5.289675
CCAAATCTGTACATGTCGAAGTCTC
59.710
44.000
0.00
0.00
0.00
3.36
3583
7073
5.171476
CCAAATCTGTACATGTCGAAGTCT
58.829
41.667
0.00
0.00
0.00
3.24
3584
7074
4.929808
ACCAAATCTGTACATGTCGAAGTC
59.070
41.667
0.00
0.00
0.00
3.01
3585
7075
4.894784
ACCAAATCTGTACATGTCGAAGT
58.105
39.130
0.00
0.00
0.00
3.01
3586
7076
4.929211
TGACCAAATCTGTACATGTCGAAG
59.071
41.667
0.00
0.00
0.00
3.79
3587
7077
4.688879
GTGACCAAATCTGTACATGTCGAA
59.311
41.667
0.00
0.00
0.00
3.71
3588
7078
4.242475
GTGACCAAATCTGTACATGTCGA
58.758
43.478
0.00
0.00
0.00
4.20
3589
7079
3.060761
CGTGACCAAATCTGTACATGTCG
59.939
47.826
0.00
0.00
0.00
4.35
3590
7080
4.242475
TCGTGACCAAATCTGTACATGTC
58.758
43.478
0.00
0.00
0.00
3.06
3591
7081
4.021456
TCTCGTGACCAAATCTGTACATGT
60.021
41.667
2.69
2.69
0.00
3.21
3592
7082
4.494484
TCTCGTGACCAAATCTGTACATG
58.506
43.478
0.00
0.00
0.00
3.21
3593
7083
4.801330
TCTCGTGACCAAATCTGTACAT
57.199
40.909
0.00
0.00
0.00
2.29
3594
7084
4.594123
TTCTCGTGACCAAATCTGTACA
57.406
40.909
0.00
0.00
0.00
2.90
3595
7085
5.637810
TGATTTCTCGTGACCAAATCTGTAC
59.362
40.000
10.20
0.00
37.40
2.90
3596
7086
5.789521
TGATTTCTCGTGACCAAATCTGTA
58.210
37.500
10.20
0.00
37.40
2.74
3597
7087
4.641396
TGATTTCTCGTGACCAAATCTGT
58.359
39.130
10.20
0.00
37.40
3.41
3598
7088
5.391310
CCTTGATTTCTCGTGACCAAATCTG
60.391
44.000
10.20
5.27
37.40
2.90
3599
7089
4.697352
CCTTGATTTCTCGTGACCAAATCT
59.303
41.667
10.20
0.00
37.40
2.40
3600
7090
4.142600
CCCTTGATTTCTCGTGACCAAATC
60.143
45.833
4.27
4.27
37.14
2.17
3601
7091
3.758554
CCCTTGATTTCTCGTGACCAAAT
59.241
43.478
0.00
0.00
0.00
2.32
3602
7092
3.146066
CCCTTGATTTCTCGTGACCAAA
58.854
45.455
0.00
0.00
0.00
3.28
3603
7093
2.552155
CCCCTTGATTTCTCGTGACCAA
60.552
50.000
0.00
0.00
0.00
3.67
3604
7094
1.003118
CCCCTTGATTTCTCGTGACCA
59.997
52.381
0.00
0.00
0.00
4.02
3605
7095
1.278127
TCCCCTTGATTTCTCGTGACC
59.722
52.381
0.00
0.00
0.00
4.02
3606
7096
2.289444
TGTCCCCTTGATTTCTCGTGAC
60.289
50.000
0.00
0.00
0.00
3.67
3607
7097
1.974957
TGTCCCCTTGATTTCTCGTGA
59.025
47.619
0.00
0.00
0.00
4.35
3608
7098
2.076863
GTGTCCCCTTGATTTCTCGTG
58.923
52.381
0.00
0.00
0.00
4.35
3609
7099
1.697432
TGTGTCCCCTTGATTTCTCGT
59.303
47.619
0.00
0.00
0.00
4.18
3610
7100
2.472695
TGTGTCCCCTTGATTTCTCG
57.527
50.000
0.00
0.00
0.00
4.04
3611
7101
4.021102
TCTTGTGTCCCCTTGATTTCTC
57.979
45.455
0.00
0.00
0.00
2.87
3612
7102
4.141158
AGTTCTTGTGTCCCCTTGATTTCT
60.141
41.667
0.00
0.00
0.00
2.52
3613
7103
4.022849
CAGTTCTTGTGTCCCCTTGATTTC
60.023
45.833
0.00
0.00
0.00
2.17
3614
7104
3.891366
CAGTTCTTGTGTCCCCTTGATTT
59.109
43.478
0.00
0.00
0.00
2.17
3615
7105
3.490348
CAGTTCTTGTGTCCCCTTGATT
58.510
45.455
0.00
0.00
0.00
2.57
3616
7106
2.224867
CCAGTTCTTGTGTCCCCTTGAT
60.225
50.000
0.00
0.00
0.00
2.57
3617
7107
1.142870
CCAGTTCTTGTGTCCCCTTGA
59.857
52.381
0.00
0.00
0.00
3.02
3618
7108
1.609208
CCAGTTCTTGTGTCCCCTTG
58.391
55.000
0.00
0.00
0.00
3.61
3619
7109
0.478507
CCCAGTTCTTGTGTCCCCTT
59.521
55.000
0.00
0.00
0.00
3.95
3620
7110
0.697854
ACCCAGTTCTTGTGTCCCCT
60.698
55.000
0.00
0.00
0.00
4.79
3621
7111
0.185175
AACCCAGTTCTTGTGTCCCC
59.815
55.000
0.00
0.00
0.00
4.81
3622
7112
1.318576
CAACCCAGTTCTTGTGTCCC
58.681
55.000
0.00
0.00
0.00
4.46
3623
7113
1.676006
CACAACCCAGTTCTTGTGTCC
59.324
52.381
2.94
0.00
41.53
4.02
3624
7114
2.639065
TCACAACCCAGTTCTTGTGTC
58.361
47.619
9.65
0.00
45.05
3.67
3625
7115
2.799126
TCACAACCCAGTTCTTGTGT
57.201
45.000
9.65
0.00
45.05
3.72
3626
7116
2.294233
CCATCACAACCCAGTTCTTGTG
59.706
50.000
4.48
4.48
45.81
3.33
3627
7117
2.174639
TCCATCACAACCCAGTTCTTGT
59.825
45.455
0.00
0.00
0.00
3.16
3628
7118
2.862541
TCCATCACAACCCAGTTCTTG
58.137
47.619
0.00
0.00
0.00
3.02
3629
7119
3.593442
TTCCATCACAACCCAGTTCTT
57.407
42.857
0.00
0.00
0.00
2.52
3630
7120
3.117512
ACTTTCCATCACAACCCAGTTCT
60.118
43.478
0.00
0.00
0.00
3.01
3631
7121
3.222603
ACTTTCCATCACAACCCAGTTC
58.777
45.455
0.00
0.00
0.00
3.01
3632
7122
3.312736
ACTTTCCATCACAACCCAGTT
57.687
42.857
0.00
0.00
0.00
3.16
3633
7123
3.312736
AACTTTCCATCACAACCCAGT
57.687
42.857
0.00
0.00
0.00
4.00
3634
7124
4.670896
AAAACTTTCCATCACAACCCAG
57.329
40.909
0.00
0.00
0.00
4.45
3635
7125
6.739331
ATTAAAACTTTCCATCACAACCCA
57.261
33.333
0.00
0.00
0.00
4.51
3636
7126
9.719355
AATTATTAAAACTTTCCATCACAACCC
57.281
29.630
0.00
0.00
0.00
4.11
3643
7133
9.463443
CGGATCCAATTATTAAAACTTTCCATC
57.537
33.333
13.41
0.00
0.00
3.51
3644
7134
8.421002
CCGGATCCAATTATTAAAACTTTCCAT
58.579
33.333
13.41
0.00
0.00
3.41
3645
7135
7.147811
CCCGGATCCAATTATTAAAACTTTCCA
60.148
37.037
13.41
0.00
0.00
3.53
3646
7136
7.068962
TCCCGGATCCAATTATTAAAACTTTCC
59.931
37.037
13.41
0.00
0.00
3.13
3647
7137
7.919091
GTCCCGGATCCAATTATTAAAACTTTC
59.081
37.037
13.41
0.00
0.00
2.62
3648
7138
7.397761
TGTCCCGGATCCAATTATTAAAACTTT
59.602
33.333
13.41
0.00
0.00
2.66
3649
7139
6.893005
TGTCCCGGATCCAATTATTAAAACTT
59.107
34.615
13.41
0.00
0.00
2.66
3650
7140
6.428295
TGTCCCGGATCCAATTATTAAAACT
58.572
36.000
13.41
0.00
0.00
2.66
3651
7141
6.702716
TGTCCCGGATCCAATTATTAAAAC
57.297
37.500
13.41
0.00
0.00
2.43
3652
7142
7.685641
GCATTGTCCCGGATCCAATTATTAAAA
60.686
37.037
13.41
0.00
0.00
1.52
3653
7143
6.239176
GCATTGTCCCGGATCCAATTATTAAA
60.239
38.462
13.41
0.00
0.00
1.52
3654
7144
5.242838
GCATTGTCCCGGATCCAATTATTAA
59.757
40.000
13.41
0.00
0.00
1.40
3655
7145
4.764823
GCATTGTCCCGGATCCAATTATTA
59.235
41.667
13.41
0.00
0.00
0.98
3656
7146
3.573967
GCATTGTCCCGGATCCAATTATT
59.426
43.478
13.41
0.00
0.00
1.40
3657
7147
3.157087
GCATTGTCCCGGATCCAATTAT
58.843
45.455
13.41
0.00
0.00
1.28
3658
7148
2.174639
AGCATTGTCCCGGATCCAATTA
59.825
45.455
13.41
0.00
0.00
1.40
3659
7149
1.063717
AGCATTGTCCCGGATCCAATT
60.064
47.619
13.41
0.00
0.00
2.32
3660
7150
0.552848
AGCATTGTCCCGGATCCAAT
59.447
50.000
13.41
5.13
0.00
3.16
3661
7151
1.208706
TAGCATTGTCCCGGATCCAA
58.791
50.000
13.41
2.50
0.00
3.53
3662
7152
1.072173
CATAGCATTGTCCCGGATCCA
59.928
52.381
13.41
0.00
0.00
3.41
3663
7153
1.611673
CCATAGCATTGTCCCGGATCC
60.612
57.143
0.73
0.00
0.00
3.36
3664
7154
1.347707
TCCATAGCATTGTCCCGGATC
59.652
52.381
0.73
0.00
0.00
3.36
3665
7155
1.434188
TCCATAGCATTGTCCCGGAT
58.566
50.000
0.73
0.00
0.00
4.18
3666
7156
1.072173
CATCCATAGCATTGTCCCGGA
59.928
52.381
0.73
0.00
0.00
5.14
3667
7157
1.072173
TCATCCATAGCATTGTCCCGG
59.928
52.381
0.00
0.00
0.00
5.73
3668
7158
2.146342
GTCATCCATAGCATTGTCCCG
58.854
52.381
0.00
0.00
0.00
5.14
3669
7159
3.213206
TGTCATCCATAGCATTGTCCC
57.787
47.619
0.00
0.00
0.00
4.46
3670
7160
3.434641
CGATGTCATCCATAGCATTGTCC
59.565
47.826
7.25
0.00
32.56
4.02
3671
7161
4.309933
TCGATGTCATCCATAGCATTGTC
58.690
43.478
7.25
0.00
32.56
3.18
3672
7162
4.341366
TCGATGTCATCCATAGCATTGT
57.659
40.909
7.25
0.00
32.56
2.71
3673
7163
4.694037
ACATCGATGTCATCCATAGCATTG
59.306
41.667
25.18
0.00
35.87
2.82
3674
7164
4.903054
ACATCGATGTCATCCATAGCATT
58.097
39.130
25.18
0.00
35.87
3.56
3675
7165
4.548451
ACATCGATGTCATCCATAGCAT
57.452
40.909
25.18
0.00
35.87
3.79
3687
7177
2.038426
TGTTGGTTGGAGACATCGATGT
59.962
45.455
30.37
30.37
45.16
3.06
3688
7178
2.674852
CTGTTGGTTGGAGACATCGATG
59.325
50.000
23.68
23.68
42.32
3.84
3689
7179
2.303022
ACTGTTGGTTGGAGACATCGAT
59.697
45.455
0.00
0.00
42.32
3.59
3690
7180
1.691976
ACTGTTGGTTGGAGACATCGA
59.308
47.619
0.00
0.00
42.32
3.59
3691
7181
2.169832
ACTGTTGGTTGGAGACATCG
57.830
50.000
0.00
0.00
42.32
3.84
3692
7182
3.251004
GTGAACTGTTGGTTGGAGACATC
59.749
47.826
0.00
0.00
42.32
3.06
3693
7183
3.117888
AGTGAACTGTTGGTTGGAGACAT
60.118
43.478
0.00
0.00
42.32
3.06
3694
7184
2.238646
AGTGAACTGTTGGTTGGAGACA
59.761
45.455
0.00
0.00
38.41
3.41
3695
7185
2.919228
AGTGAACTGTTGGTTGGAGAC
58.081
47.619
0.00
0.00
38.41
3.36
3696
7186
3.278574
CAAGTGAACTGTTGGTTGGAGA
58.721
45.455
0.00
0.00
38.41
3.71
3697
7187
2.358898
CCAAGTGAACTGTTGGTTGGAG
59.641
50.000
15.26
0.00
38.77
3.86
3698
7188
2.374184
CCAAGTGAACTGTTGGTTGGA
58.626
47.619
15.26
0.00
38.77
3.53
3699
7189
2.869233
CCAAGTGAACTGTTGGTTGG
57.131
50.000
0.00
4.39
38.77
3.77
3704
7194
1.597663
GTCCGACCAAGTGAACTGTTG
59.402
52.381
0.00
0.00
0.00
3.33
3705
7195
1.208535
TGTCCGACCAAGTGAACTGTT
59.791
47.619
0.00
0.00
0.00
3.16
3706
7196
0.828022
TGTCCGACCAAGTGAACTGT
59.172
50.000
0.00
0.00
0.00
3.55
3707
7197
3.678921
TGTCCGACCAAGTGAACTG
57.321
52.632
0.00
0.00
0.00
3.16
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.