Multiple sequence alignment - TraesCS4D01G283700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G283700 chr4D 100.000 4281 0 0 1 4281 455483822 455488102 0.000000e+00 7906.0
1 TraesCS4D01G283700 chr4D 82.645 968 98 38 813 1741 455477784 455478720 0.000000e+00 793.0
2 TraesCS4D01G283700 chr4D 81.250 240 22 10 351 585 455483908 455484129 5.690000e-39 172.0
3 TraesCS4D01G283700 chr4D 81.250 240 22 10 87 308 455484172 455484406 5.690000e-39 172.0
4 TraesCS4D01G283700 chr4A 92.762 2473 146 20 813 3270 12392569 12395023 0.000000e+00 3544.0
5 TraesCS4D01G283700 chr4A 79.012 891 110 50 3400 4264 12395288 12396127 4.870000e-149 538.0
6 TraesCS4D01G283700 chr4A 82.880 368 37 16 1050 1406 12525268 12524916 1.500000e-79 307.0
7 TraesCS4D01G283700 chr4A 88.333 120 13 1 924 1043 12539559 12539441 4.460000e-30 143.0
8 TraesCS4D01G283700 chr4B 93.067 1774 97 14 1494 3259 568553099 568554854 0.000000e+00 2571.0
9 TraesCS4D01G283700 chr4B 90.701 699 51 11 811 1500 568552287 568552980 0.000000e+00 918.0
10 TraesCS4D01G283700 chr4B 84.307 873 91 24 974 1837 568446282 568447117 0.000000e+00 811.0
11 TraesCS4D01G283700 chr4B 84.330 619 44 33 3671 4264 568555298 568555888 1.340000e-154 556.0
12 TraesCS4D01G283700 chr5D 80.846 449 52 19 331 757 410079797 410080233 5.340000e-84 322.0
13 TraesCS4D01G283700 chr5D 80.585 376 49 16 337 694 477835593 477835962 7.060000e-68 268.0
14 TraesCS4D01G283700 chr5D 81.100 291 41 12 24 306 477835563 477835847 2.000000e-53 220.0
15 TraesCS4D01G283700 chr5D 79.259 135 23 3 337 468 477835419 477835551 5.900000e-14 89.8
16 TraesCS4D01G283700 chr2A 78.133 407 52 28 340 720 762982466 762982071 1.550000e-54 224.0
17 TraesCS4D01G283700 chr2A 77.328 247 47 8 63 306 762982459 762982219 2.080000e-28 137.0
18 TraesCS4D01G283700 chr2A 81.006 179 27 6 333 506 748449601 748449777 7.470000e-28 135.0
19 TraesCS4D01G283700 chr2D 75.472 477 53 41 23 483 636730430 636730858 1.580000e-39 174.0
20 TraesCS4D01G283700 chr6D 84.177 158 11 10 340 490 148082123 148081973 1.600000e-29 141.0
21 TraesCS4D01G283700 chr6D 100.000 30 0 0 3323 3352 23637216 23637245 5.980000e-04 56.5
22 TraesCS4D01G283700 chr7D 85.455 110 7 5 377 481 620121163 620121268 5.850000e-19 106.0
23 TraesCS4D01G283700 chr7D 76.777 211 27 19 346 549 557757823 557758018 9.800000e-17 99.0
24 TraesCS4D01G283700 chr7A 75.962 208 32 14 313 509 48480565 48480765 1.640000e-14 91.6
25 TraesCS4D01G283700 chr3A 83.824 68 6 4 338 402 715649980 715650045 4.620000e-05 60.2
26 TraesCS4D01G283700 chr2B 100.000 29 0 0 3321 3349 442791577 442791605 2.000000e-03 54.7
27 TraesCS4D01G283700 chr7B 100.000 28 0 0 1072 1099 237346837 237346810 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G283700 chr4D 455483822 455488102 4280 False 7906.000000 7906 100.000 1 4281 1 chr4D.!!$F2 4280
1 TraesCS4D01G283700 chr4D 455477784 455478720 936 False 793.000000 793 82.645 813 1741 1 chr4D.!!$F1 928
2 TraesCS4D01G283700 chr4A 12392569 12396127 3558 False 2041.000000 3544 85.887 813 4264 2 chr4A.!!$F1 3451
3 TraesCS4D01G283700 chr4B 568552287 568555888 3601 False 1348.333333 2571 89.366 811 4264 3 chr4B.!!$F2 3453
4 TraesCS4D01G283700 chr4B 568446282 568447117 835 False 811.000000 811 84.307 974 1837 1 chr4B.!!$F1 863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
761 762 0.031212 AATTGGGGGTTGCCCTATGG 60.031 55.0 4.02 0.0 44.66 2.74 F
766 767 0.853530 GGGGTTGCCCTATGGAGAAT 59.146 55.0 4.02 0.0 44.66 2.40 F
950 974 1.200519 TTCTGTCCCTAACCATCCGG 58.799 55.0 0.00 0.0 38.77 5.14 F
2723 2914 0.677288 TGTCGTCCTTTGATCCGTGT 59.323 50.0 0.00 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1826 2015 2.519771 AAGAATGAGGGCAGCAATGA 57.480 45.0 0.00 0.0 0.00 2.57 R
2095 2284 2.742053 CAGGTTTAACATCTGACCGGTG 59.258 50.0 14.63 0.0 37.26 4.94 R
2912 3107 0.248990 CGCAGCACCTGAAAAAGCAA 60.249 50.0 0.00 0.0 32.44 3.91 R
3966 4514 0.034960 TCGTACTGCTCTGCTCTCCT 60.035 55.0 0.00 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
251 252 9.593565 AAGAGATAACATTTCCTTCCTTTCTTT 57.406 29.630 0.00 0.00 0.00 2.52
252 253 9.018582 AGAGATAACATTTCCTTCCTTTCTTTG 57.981 33.333 0.00 0.00 0.00 2.77
253 254 8.712228 AGATAACATTTCCTTCCTTTCTTTGT 57.288 30.769 0.00 0.00 0.00 2.83
254 255 9.807921 AGATAACATTTCCTTCCTTTCTTTGTA 57.192 29.630 0.00 0.00 0.00 2.41
258 259 8.477419 ACATTTCCTTCCTTTCTTTGTATTCA 57.523 30.769 0.00 0.00 0.00 2.57
259 260 8.360390 ACATTTCCTTCCTTTCTTTGTATTCAC 58.640 33.333 0.00 0.00 0.00 3.18
260 261 7.889873 TTTCCTTCCTTTCTTTGTATTCACA 57.110 32.000 0.00 0.00 0.00 3.58
261 262 8.477419 TTTCCTTCCTTTCTTTGTATTCACAT 57.523 30.769 0.00 0.00 33.76 3.21
262 263 7.452880 TCCTTCCTTTCTTTGTATTCACATG 57.547 36.000 0.00 0.00 33.76 3.21
263 264 6.434028 TCCTTCCTTTCTTTGTATTCACATGG 59.566 38.462 0.00 0.00 33.76 3.66
264 265 5.643379 TCCTTTCTTTGTATTCACATGGC 57.357 39.130 0.00 0.00 33.76 4.40
265 266 5.076182 TCCTTTCTTTGTATTCACATGGCA 58.924 37.500 0.00 0.00 33.76 4.92
266 267 5.538053 TCCTTTCTTTGTATTCACATGGCAA 59.462 36.000 0.00 0.00 33.76 4.52
267 268 5.634859 CCTTTCTTTGTATTCACATGGCAAC 59.365 40.000 0.00 0.00 33.76 4.17
268 269 6.403866 TTTCTTTGTATTCACATGGCAACT 57.596 33.333 0.00 0.00 33.76 3.16
269 270 5.627499 TCTTTGTATTCACATGGCAACTC 57.373 39.130 0.00 0.00 33.76 3.01
270 271 5.069318 TCTTTGTATTCACATGGCAACTCA 58.931 37.500 0.00 0.00 33.76 3.41
271 272 5.534278 TCTTTGTATTCACATGGCAACTCAA 59.466 36.000 0.00 0.00 33.76 3.02
272 273 5.781210 TTGTATTCACATGGCAACTCAAA 57.219 34.783 0.00 0.00 33.76 2.69
273 274 5.981088 TGTATTCACATGGCAACTCAAAT 57.019 34.783 0.00 0.00 37.61 2.32
274 275 6.343716 TGTATTCACATGGCAACTCAAATT 57.656 33.333 0.00 0.00 37.61 1.82
275 276 6.157904 TGTATTCACATGGCAACTCAAATTG 58.842 36.000 0.00 0.00 37.61 2.32
276 277 4.669206 TTCACATGGCAACTCAAATTGT 57.331 36.364 0.00 0.00 37.61 2.71
277 278 5.781210 TTCACATGGCAACTCAAATTGTA 57.219 34.783 0.00 0.00 37.61 2.41
278 279 5.375417 TCACATGGCAACTCAAATTGTAG 57.625 39.130 0.00 0.00 37.61 2.74
279 280 4.218200 TCACATGGCAACTCAAATTGTAGG 59.782 41.667 0.00 0.00 37.61 3.18
280 281 4.218200 CACATGGCAACTCAAATTGTAGGA 59.782 41.667 0.00 0.00 37.61 2.94
281 282 4.218417 ACATGGCAACTCAAATTGTAGGAC 59.782 41.667 0.00 0.00 37.61 3.85
282 283 3.153919 TGGCAACTCAAATTGTAGGACC 58.846 45.455 0.00 0.00 37.61 4.46
283 284 3.153919 GGCAACTCAAATTGTAGGACCA 58.846 45.455 0.00 0.00 31.83 4.02
284 285 3.763897 GGCAACTCAAATTGTAGGACCAT 59.236 43.478 0.00 0.00 31.83 3.55
285 286 4.380867 GGCAACTCAAATTGTAGGACCATG 60.381 45.833 0.00 0.00 31.83 3.66
286 287 4.458989 GCAACTCAAATTGTAGGACCATGA 59.541 41.667 0.00 0.00 31.83 3.07
287 288 5.619981 GCAACTCAAATTGTAGGACCATGAC 60.620 44.000 0.00 0.00 31.83 3.06
288 289 5.241403 ACTCAAATTGTAGGACCATGACA 57.759 39.130 0.00 0.00 0.00 3.58
289 290 5.630121 ACTCAAATTGTAGGACCATGACAA 58.370 37.500 8.55 8.55 37.47 3.18
290 291 5.707298 ACTCAAATTGTAGGACCATGACAAG 59.293 40.000 11.04 2.24 36.57 3.16
291 292 5.875224 TCAAATTGTAGGACCATGACAAGA 58.125 37.500 11.04 3.02 36.57 3.02
292 293 6.484288 TCAAATTGTAGGACCATGACAAGAT 58.516 36.000 11.04 2.63 36.57 2.40
293 294 6.947733 TCAAATTGTAGGACCATGACAAGATT 59.052 34.615 11.04 7.10 36.57 2.40
294 295 8.106462 TCAAATTGTAGGACCATGACAAGATTA 58.894 33.333 11.04 0.00 36.57 1.75
295 296 8.739039 CAAATTGTAGGACCATGACAAGATTAA 58.261 33.333 11.04 0.00 36.57 1.40
296 297 8.877864 AATTGTAGGACCATGACAAGATTAAA 57.122 30.769 11.04 0.00 36.57 1.52
297 298 9.479549 AATTGTAGGACCATGACAAGATTAAAT 57.520 29.630 11.04 0.00 36.57 1.40
384 385 8.618702 AAGAGATGGCATCTTTGTATTATGAG 57.381 34.615 29.35 0.00 40.38 2.90
385 386 7.971201 AGAGATGGCATCTTTGTATTATGAGA 58.029 34.615 29.35 0.00 40.38 3.27
386 387 8.604184 AGAGATGGCATCTTTGTATTATGAGAT 58.396 33.333 29.35 2.96 40.38 2.75
387 388 8.563123 AGATGGCATCTTTGTATTATGAGATG 57.437 34.615 24.01 7.61 45.14 2.90
434 435 9.851686 ATGACATTTTTATACTAAGAGATGGCA 57.148 29.630 0.00 0.00 35.92 4.92
435 436 9.851686 TGACATTTTTATACTAAGAGATGGCAT 57.148 29.630 0.00 0.00 0.00 4.40
447 448 9.118300 ACTAAGAGATGGCATTTTTATCAAGAG 57.882 33.333 0.00 0.00 0.00 2.85
448 449 9.334947 CTAAGAGATGGCATTTTTATCAAGAGA 57.665 33.333 0.00 0.00 0.00 3.10
449 450 8.763984 AAGAGATGGCATTTTTATCAAGAGAT 57.236 30.769 0.00 0.00 38.29 2.75
450 451 8.167605 AGAGATGGCATTTTTATCAAGAGATG 57.832 34.615 0.00 0.00 35.67 2.90
451 452 7.997223 AGAGATGGCATTTTTATCAAGAGATGA 59.003 33.333 0.00 0.00 43.67 2.92
452 453 7.938715 AGATGGCATTTTTATCAAGAGATGAC 58.061 34.615 0.00 0.00 41.93 3.06
453 454 7.558807 AGATGGCATTTTTATCAAGAGATGACA 59.441 33.333 0.00 0.00 41.93 3.58
454 455 7.649533 TGGCATTTTTATCAAGAGATGACAT 57.350 32.000 0.00 0.00 41.93 3.06
455 456 8.070034 TGGCATTTTTATCAAGAGATGACATT 57.930 30.769 0.00 0.00 41.93 2.71
456 457 8.533657 TGGCATTTTTATCAAGAGATGACATTT 58.466 29.630 0.00 0.00 41.93 2.32
504 505 9.620259 TTTTTGTTTATTAAGAGGTGGCATTTT 57.380 25.926 0.00 0.00 0.00 1.82
505 506 9.620259 TTTTGTTTATTAAGAGGTGGCATTTTT 57.380 25.926 0.00 0.00 0.00 1.94
540 541 5.793026 TTTTTCTTTTGTGTTCACATGGC 57.207 34.783 6.47 0.00 0.00 4.40
541 542 4.462508 TTTCTTTTGTGTTCACATGGCA 57.537 36.364 6.47 0.00 0.00 4.92
542 543 4.462508 TTCTTTTGTGTTCACATGGCAA 57.537 36.364 6.47 0.00 0.00 4.52
543 544 3.779759 TCTTTTGTGTTCACATGGCAAC 58.220 40.909 6.47 0.00 0.00 4.17
544 545 3.446873 TCTTTTGTGTTCACATGGCAACT 59.553 39.130 6.47 0.00 37.61 3.16
545 546 3.435105 TTTGTGTTCACATGGCAACTC 57.565 42.857 6.47 1.17 37.61 3.01
546 547 2.049888 TGTGTTCACATGGCAACTCA 57.950 45.000 1.23 3.84 37.61 3.41
547 548 2.373224 TGTGTTCACATGGCAACTCAA 58.627 42.857 9.92 0.00 37.61 3.02
548 549 2.757314 TGTGTTCACATGGCAACTCAAA 59.243 40.909 9.92 0.00 37.61 2.69
549 550 3.384146 TGTGTTCACATGGCAACTCAAAT 59.616 39.130 9.92 0.00 37.61 2.32
550 551 4.141981 TGTGTTCACATGGCAACTCAAATT 60.142 37.500 9.92 0.00 37.61 1.82
551 552 4.209703 GTGTTCACATGGCAACTCAAATTG 59.790 41.667 0.00 0.00 37.61 2.32
552 553 4.141981 TGTTCACATGGCAACTCAAATTGT 60.142 37.500 0.00 0.00 37.61 2.71
553 554 5.068329 TGTTCACATGGCAACTCAAATTGTA 59.932 36.000 0.00 0.00 37.61 2.41
554 555 5.375417 TCACATGGCAACTCAAATTGTAG 57.625 39.130 0.00 0.00 37.61 2.74
555 556 4.218200 TCACATGGCAACTCAAATTGTAGG 59.782 41.667 0.00 0.00 37.61 3.18
556 557 4.218200 CACATGGCAACTCAAATTGTAGGA 59.782 41.667 0.00 0.00 37.61 2.94
557 558 4.218417 ACATGGCAACTCAAATTGTAGGAC 59.782 41.667 0.00 0.00 37.61 3.85
558 559 3.153919 TGGCAACTCAAATTGTAGGACC 58.846 45.455 0.00 0.00 37.61 4.46
559 560 3.153919 GGCAACTCAAATTGTAGGACCA 58.846 45.455 0.00 0.00 31.83 4.02
560 561 3.763897 GGCAACTCAAATTGTAGGACCAT 59.236 43.478 0.00 0.00 31.83 3.55
561 562 4.380867 GGCAACTCAAATTGTAGGACCATG 60.381 45.833 0.00 0.00 31.83 3.66
562 563 4.458989 GCAACTCAAATTGTAGGACCATGA 59.541 41.667 0.00 0.00 31.83 3.07
563 564 5.619981 GCAACTCAAATTGTAGGACCATGAC 60.620 44.000 0.00 0.00 31.83 3.06
564 565 5.241403 ACTCAAATTGTAGGACCATGACA 57.759 39.130 0.00 0.00 0.00 3.58
565 566 5.630121 ACTCAAATTGTAGGACCATGACAA 58.370 37.500 8.55 8.55 37.47 3.18
566 567 5.707298 ACTCAAATTGTAGGACCATGACAAG 59.293 40.000 11.04 2.24 36.57 3.16
567 568 5.875224 TCAAATTGTAGGACCATGACAAGA 58.125 37.500 11.04 3.02 36.57 3.02
568 569 6.484288 TCAAATTGTAGGACCATGACAAGAT 58.516 36.000 11.04 2.63 36.57 2.40
569 570 6.947733 TCAAATTGTAGGACCATGACAAGATT 59.052 34.615 11.04 7.10 36.57 2.40
570 571 8.106462 TCAAATTGTAGGACCATGACAAGATTA 58.894 33.333 11.04 0.00 36.57 1.75
571 572 8.739039 CAAATTGTAGGACCATGACAAGATTAA 58.261 33.333 11.04 0.00 36.57 1.40
572 573 8.877864 AATTGTAGGACCATGACAAGATTAAA 57.122 30.769 11.04 0.00 36.57 1.52
573 574 9.479549 AATTGTAGGACCATGACAAGATTAAAT 57.520 29.630 11.04 0.00 36.57 1.40
613 614 9.720769 ACCACGGTTAATTTATGATATTAGAGG 57.279 33.333 0.00 0.00 0.00 3.69
614 615 9.938280 CCACGGTTAATTTATGATATTAGAGGA 57.062 33.333 0.00 0.00 0.00 3.71
616 617 9.635520 ACGGTTAATTTATGATATTAGAGGACG 57.364 33.333 0.00 0.00 0.00 4.79
617 618 9.850628 CGGTTAATTTATGATATTAGAGGACGA 57.149 33.333 0.00 0.00 0.00 4.20
626 627 7.582667 TGATATTAGAGGACGACATCTTTCA 57.417 36.000 7.45 4.21 38.20 2.69
627 628 8.183104 TGATATTAGAGGACGACATCTTTCAT 57.817 34.615 7.45 1.37 38.20 2.57
628 629 9.297037 TGATATTAGAGGACGACATCTTTCATA 57.703 33.333 7.45 3.42 38.20 2.15
632 633 9.838339 ATTAGAGGACGACATCTTTCATAAATT 57.162 29.630 7.45 0.00 38.20 1.82
633 634 7.545362 AGAGGACGACATCTTTCATAAATTG 57.455 36.000 0.00 0.00 33.14 2.32
634 635 7.331026 AGAGGACGACATCTTTCATAAATTGA 58.669 34.615 0.00 0.00 33.14 2.57
635 636 7.493971 AGAGGACGACATCTTTCATAAATTGAG 59.506 37.037 0.00 0.00 33.14 3.02
636 637 6.037610 AGGACGACATCTTTCATAAATTGAGC 59.962 38.462 0.00 0.00 35.27 4.26
637 638 6.124088 ACGACATCTTTCATAAATTGAGCC 57.876 37.500 0.00 0.00 35.27 4.70
638 639 5.882557 ACGACATCTTTCATAAATTGAGCCT 59.117 36.000 0.00 0.00 35.27 4.58
639 640 6.375455 ACGACATCTTTCATAAATTGAGCCTT 59.625 34.615 0.00 0.00 35.27 4.35
640 641 6.690098 CGACATCTTTCATAAATTGAGCCTTG 59.310 38.462 0.00 0.00 35.27 3.61
641 642 6.335777 ACATCTTTCATAAATTGAGCCTTGC 58.664 36.000 0.00 0.00 35.27 4.01
642 643 5.981088 TCTTTCATAAATTGAGCCTTGCA 57.019 34.783 0.00 0.00 35.27 4.08
643 644 6.534475 TCTTTCATAAATTGAGCCTTGCAT 57.466 33.333 0.00 0.00 35.27 3.96
644 645 6.938507 TCTTTCATAAATTGAGCCTTGCATT 58.061 32.000 0.00 0.00 35.27 3.56
645 646 7.388437 TCTTTCATAAATTGAGCCTTGCATTT 58.612 30.769 0.00 0.00 35.27 2.32
646 647 7.879160 TCTTTCATAAATTGAGCCTTGCATTTT 59.121 29.630 0.00 0.00 35.27 1.82
647 648 7.982761 TTCATAAATTGAGCCTTGCATTTTT 57.017 28.000 0.00 0.00 35.27 1.94
703 704 8.759481 AAAAATGTTTTTGGGGTTTATGACAT 57.241 26.923 2.87 0.00 38.81 3.06
704 705 8.759481 AAAATGTTTTTGGGGTTTATGACATT 57.241 26.923 0.00 0.00 37.89 2.71
705 706 8.759481 AAATGTTTTTGGGGTTTATGACATTT 57.241 26.923 0.00 0.00 39.96 2.32
706 707 8.759481 AATGTTTTTGGGGTTTATGACATTTT 57.241 26.923 0.00 0.00 33.99 1.82
707 708 8.759481 ATGTTTTTGGGGTTTATGACATTTTT 57.241 26.923 0.00 0.00 0.00 1.94
708 709 9.853177 ATGTTTTTGGGGTTTATGACATTTTTA 57.147 25.926 0.00 0.00 0.00 1.52
709 710 9.853177 TGTTTTTGGGGTTTATGACATTTTTAT 57.147 25.926 0.00 0.00 0.00 1.40
738 739 6.635030 AAAGCACCTAACTAGACTTTTTGG 57.365 37.500 0.00 0.00 0.00 3.28
739 740 4.652822 AGCACCTAACTAGACTTTTTGGG 58.347 43.478 0.00 0.00 0.00 4.12
740 741 4.104261 AGCACCTAACTAGACTTTTTGGGT 59.896 41.667 0.00 0.00 34.65 4.51
741 742 4.454847 GCACCTAACTAGACTTTTTGGGTC 59.545 45.833 0.00 0.00 32.17 4.46
742 743 5.617252 CACCTAACTAGACTTTTTGGGTCA 58.383 41.667 0.00 0.00 32.17 4.02
743 744 6.059484 CACCTAACTAGACTTTTTGGGTCAA 58.941 40.000 0.00 0.00 32.17 3.18
744 745 6.715264 CACCTAACTAGACTTTTTGGGTCAAT 59.285 38.462 0.00 0.00 32.17 2.57
745 746 7.230712 CACCTAACTAGACTTTTTGGGTCAATT 59.769 37.037 0.00 0.00 32.17 2.32
746 747 7.230712 ACCTAACTAGACTTTTTGGGTCAATTG 59.769 37.037 0.00 0.00 36.29 2.32
747 748 6.405278 AACTAGACTTTTTGGGTCAATTGG 57.595 37.500 5.42 0.00 36.29 3.16
748 749 4.832823 ACTAGACTTTTTGGGTCAATTGGG 59.167 41.667 5.42 0.00 36.29 4.12
749 750 2.972021 AGACTTTTTGGGTCAATTGGGG 59.028 45.455 5.42 0.00 36.29 4.96
750 751 2.038426 GACTTTTTGGGTCAATTGGGGG 59.962 50.000 5.42 0.00 34.23 5.40
751 752 2.054021 CTTTTTGGGTCAATTGGGGGT 58.946 47.619 5.42 0.00 0.00 4.95
752 753 2.198334 TTTTGGGTCAATTGGGGGTT 57.802 45.000 5.42 0.00 0.00 4.11
753 754 1.428869 TTTGGGTCAATTGGGGGTTG 58.571 50.000 5.42 0.00 0.00 3.77
754 755 1.124477 TTGGGTCAATTGGGGGTTGC 61.124 55.000 5.42 0.00 0.00 4.17
755 756 2.290287 GGGTCAATTGGGGGTTGCC 61.290 63.158 5.42 0.00 0.00 4.52
756 757 2.290287 GGTCAATTGGGGGTTGCCC 61.290 63.158 5.42 0.00 44.51 5.36
757 758 1.229177 GTCAATTGGGGGTTGCCCT 60.229 57.895 5.42 0.00 44.66 5.19
758 759 0.040499 GTCAATTGGGGGTTGCCCTA 59.960 55.000 5.42 0.00 44.66 3.53
759 760 1.014804 TCAATTGGGGGTTGCCCTAT 58.985 50.000 5.42 0.00 44.66 2.57
760 761 1.122227 CAATTGGGGGTTGCCCTATG 58.878 55.000 4.02 0.00 44.66 2.23
761 762 0.031212 AATTGGGGGTTGCCCTATGG 60.031 55.000 4.02 0.00 44.66 2.74
762 763 0.928726 ATTGGGGGTTGCCCTATGGA 60.929 55.000 4.02 0.00 44.66 3.41
763 764 1.580066 TTGGGGGTTGCCCTATGGAG 61.580 60.000 4.02 0.00 44.66 3.86
764 765 1.696314 GGGGGTTGCCCTATGGAGA 60.696 63.158 4.02 0.00 44.66 3.71
765 766 1.286305 GGGGGTTGCCCTATGGAGAA 61.286 60.000 4.02 0.00 44.66 2.87
766 767 0.853530 GGGGTTGCCCTATGGAGAAT 59.146 55.000 4.02 0.00 44.66 2.40
767 768 1.479389 GGGGTTGCCCTATGGAGAATG 60.479 57.143 4.02 0.00 44.66 2.67
768 769 1.479389 GGGTTGCCCTATGGAGAATGG 60.479 57.143 0.00 0.00 41.34 3.16
769 770 1.479389 GGTTGCCCTATGGAGAATGGG 60.479 57.143 0.00 0.00 42.41 4.00
824 825 7.326305 CGAAAATATTGGTAGACGGATACTCTG 59.674 40.741 0.00 0.00 0.00 3.35
851 852 2.124151 GCTACGGGACCCCTACGA 60.124 66.667 4.46 0.00 0.00 3.43
858 859 1.798626 GGGACCCCTACGAATAACCT 58.201 55.000 0.00 0.00 0.00 3.50
907 914 6.903883 TTATTGGAGTAGAGAAAACGATGC 57.096 37.500 0.00 0.00 0.00 3.91
908 915 2.876091 TGGAGTAGAGAAAACGATGCG 58.124 47.619 0.00 0.00 0.00 4.73
909 916 2.490509 TGGAGTAGAGAAAACGATGCGA 59.509 45.455 0.00 0.00 0.00 5.10
911 918 3.303760 GGAGTAGAGAAAACGATGCGAAC 59.696 47.826 0.00 0.00 0.00 3.95
913 920 2.457366 AGAGAAAACGATGCGAACCT 57.543 45.000 0.00 0.00 0.00 3.50
950 974 1.200519 TTCTGTCCCTAACCATCCGG 58.799 55.000 0.00 0.00 38.77 5.14
1007 1036 3.522731 CGCCTCTCCCACTCTCCG 61.523 72.222 0.00 0.00 0.00 4.63
1016 1045 3.382832 CACTCTCCGCCCGACCTT 61.383 66.667 0.00 0.00 0.00 3.50
1027 1056 2.032071 CGACCTTGCCGAAACCCT 59.968 61.111 0.00 0.00 0.00 4.34
1043 1084 2.552367 ACCCTCCTTCCAAACTCCTAG 58.448 52.381 0.00 0.00 0.00 3.02
1048 1089 1.207329 CCTTCCAAACTCCTAGTCCCG 59.793 57.143 0.00 0.00 0.00 5.14
1159 1203 4.720443 ATGCCAACCCCTCCCCCT 62.720 66.667 0.00 0.00 0.00 4.79
1195 1239 4.135153 CAGTCCCTCGTGCTCCCG 62.135 72.222 0.00 0.00 0.00 5.14
1257 1301 1.338200 CGTCCCCAAGAAGAAGGTCTG 60.338 57.143 0.00 0.00 0.00 3.51
1316 1363 3.073678 TCATTTACATGTGCGTGCTCTT 58.926 40.909 9.11 0.00 0.00 2.85
1347 1394 4.951715 TGATCTCTTTGCCATTGCTGTAAT 59.048 37.500 0.00 0.00 38.71 1.89
1355 1410 4.196193 TGCCATTGCTGTAATGTAGTACC 58.804 43.478 15.67 0.65 43.78 3.34
1358 1413 5.299279 GCCATTGCTGTAATGTAGTACCAAT 59.701 40.000 15.67 0.00 43.78 3.16
1360 1415 7.519970 GCCATTGCTGTAATGTAGTACCAATAC 60.520 40.741 15.67 0.00 43.78 1.89
1374 1429 6.377912 AGTACCAATACTCTAAGAGGATGCT 58.622 40.000 0.00 0.00 36.97 3.79
1445 1500 3.253188 ACATGTCGAAATGTTTCACCAGG 59.747 43.478 15.72 0.00 37.50 4.45
1455 1510 3.761897 TGTTTCACCAGGGGAACATAAG 58.238 45.455 2.55 0.00 0.00 1.73
1457 1512 4.351407 TGTTTCACCAGGGGAACATAAGTA 59.649 41.667 2.55 0.00 0.00 2.24
1458 1513 4.837093 TTCACCAGGGGAACATAAGTAG 57.163 45.455 0.00 0.00 0.00 2.57
1459 1514 3.798515 TCACCAGGGGAACATAAGTAGT 58.201 45.455 0.00 0.00 0.00 2.73
1460 1515 4.172807 TCACCAGGGGAACATAAGTAGTT 58.827 43.478 0.00 0.00 0.00 2.24
1461 1516 4.224370 TCACCAGGGGAACATAAGTAGTTC 59.776 45.833 0.00 0.00 43.49 3.01
1471 1526 9.708092 GGGAACATAAGTAGTTCATAGGATTAC 57.292 37.037 8.15 0.00 45.45 1.89
1581 1762 4.781934 AGTCTTATTCAGGGGTATGTTGC 58.218 43.478 0.00 0.00 0.00 4.17
1730 1914 3.200825 ACCTACAATCCCACATCCTCAAG 59.799 47.826 0.00 0.00 0.00 3.02
1768 1957 7.228308 GGATATCATATTTTGGCCTGCTATCTC 59.772 40.741 3.32 0.00 0.00 2.75
1810 1999 5.646606 TGTTCTTTGGTTTCTGCTTGTTAC 58.353 37.500 0.00 0.00 0.00 2.50
1826 2015 7.116075 TGCTTGTTACCCTTGTACATAATCAT 58.884 34.615 0.00 0.00 0.00 2.45
1940 2129 2.290008 TGATTGTCCGTTGCAGGTACAT 60.290 45.455 0.00 0.00 0.00 2.29
2102 2291 4.571984 AGTTAAACAACTGTTACACCGGTC 59.428 41.667 2.59 0.00 37.25 4.79
2109 2298 2.367567 ACTGTTACACCGGTCAGATGTT 59.632 45.455 23.62 2.66 0.00 2.71
2297 2487 7.497909 CCACTTTTACGGTCCAAATACAGATAT 59.502 37.037 0.00 0.00 0.00 1.63
2298 2488 9.537192 CACTTTTACGGTCCAAATACAGATATA 57.463 33.333 0.00 0.00 0.00 0.86
2341 2531 4.974368 TTTTTGTAGTGGAAGTGGTGTG 57.026 40.909 0.00 0.00 0.00 3.82
2363 2553 6.661805 TGTGGAACCAGGGTATTTTTATCTTC 59.338 38.462 0.00 0.00 34.36 2.87
2389 2579 3.935203 CCACATTGATCGCTGAAAGTAGT 59.065 43.478 1.68 0.00 35.30 2.73
2457 2647 1.895131 GGCAAACTTGGATGTCATGGT 59.105 47.619 0.00 0.00 0.00 3.55
2493 2683 4.877823 CACAAGCTCTCAGTGGCATATAAA 59.122 41.667 0.00 0.00 0.00 1.40
2546 2736 5.053145 CCATTAGGCAGTAGCTAGAAACTG 58.947 45.833 16.55 16.55 44.79 3.16
2551 2741 3.447944 GGCAGTAGCTAGAAACTGTAGGT 59.552 47.826 19.94 0.00 44.03 3.08
2555 2745 7.095270 GCAGTAGCTAGAAACTGTAGGTTTTA 58.905 38.462 19.94 0.00 44.03 1.52
2568 2758 9.760438 AACTGTAGGTTTTAAGTGGAGCCACAT 62.760 40.741 20.79 12.13 41.17 3.21
2615 2805 3.116096 AGGTTCAGACAGTAGGCCATA 57.884 47.619 5.01 0.00 0.00 2.74
2631 2822 6.152932 AGGCCATATGATGTTTGACATTTC 57.847 37.500 5.01 0.00 39.27 2.17
2666 2857 6.760440 ACATCATATCAGTTCTTCCCAGAT 57.240 37.500 0.00 0.00 0.00 2.90
2707 2898 4.874966 CCTCATCTCAGTTCCAGATTTGTC 59.125 45.833 0.00 0.00 0.00 3.18
2719 2910 3.375299 CCAGATTTGTCGTCCTTTGATCC 59.625 47.826 0.00 0.00 0.00 3.36
2723 2914 0.677288 TGTCGTCCTTTGATCCGTGT 59.323 50.000 0.00 0.00 0.00 4.49
2773 2964 2.267426 TCATGCCATTGTTCTACGTCG 58.733 47.619 0.00 0.00 0.00 5.12
2774 2965 1.999735 CATGCCATTGTTCTACGTCGT 59.000 47.619 2.21 2.21 0.00 4.34
2778 2969 2.281762 GCCATTGTTCTACGTCGTCATC 59.718 50.000 0.00 0.00 0.00 2.92
2912 3107 3.313526 GTGACTGGATATGATTTTGCGCT 59.686 43.478 9.73 0.00 0.00 5.92
2913 3108 3.947196 TGACTGGATATGATTTTGCGCTT 59.053 39.130 9.73 0.00 0.00 4.68
3020 3215 4.776647 GCACCGGGTTTGCGCATC 62.777 66.667 12.75 7.84 0.00 3.91
3025 3220 2.964978 GGGTTTGCGCATCAAGCT 59.035 55.556 12.75 0.00 42.61 3.74
3030 3225 1.454572 TTTGCGCATCAAGCTGTGGT 61.455 50.000 12.75 0.00 42.61 4.16
3031 3226 2.132517 TTGCGCATCAAGCTGTGGTG 62.133 55.000 12.75 5.18 41.76 4.17
3032 3227 2.620112 GCGCATCAAGCTGTGGTGT 61.620 57.895 0.30 0.00 40.83 4.16
3039 3234 1.417517 TCAAGCTGTGGTGTGACATCT 59.582 47.619 0.00 0.00 0.00 2.90
3040 3235 1.802960 CAAGCTGTGGTGTGACATCTC 59.197 52.381 0.00 0.00 0.00 2.75
3046 3241 3.414269 TGTGGTGTGACATCTCGTAGTA 58.586 45.455 0.00 0.00 0.00 1.82
3093 3290 5.982356 TGTATTCTGCTGCTATCTCTTTGT 58.018 37.500 0.00 0.00 0.00 2.83
3101 3298 4.277515 TGCTATCTCTTTGTGAGCAGTT 57.722 40.909 0.00 0.00 42.38 3.16
3102 3299 4.248859 TGCTATCTCTTTGTGAGCAGTTC 58.751 43.478 0.00 0.00 42.38 3.01
3123 3322 9.915629 CAGTTCTCTATGTAGACTTTAGTTTGT 57.084 33.333 0.00 0.00 0.00 2.83
3124 3323 9.915629 AGTTCTCTATGTAGACTTTAGTTTGTG 57.084 33.333 0.00 0.00 0.00 3.33
3152 3351 0.863144 TTTCGTGGCGAACTTAGTGC 59.137 50.000 3.32 0.00 45.64 4.40
3158 3358 1.352156 GGCGAACTTAGTGCTGGTCG 61.352 60.000 0.00 0.00 0.00 4.79
3194 3394 2.159254 GGTGCTCTCTGAGATGAGTGAC 60.159 54.545 8.00 0.00 35.68 3.67
3214 3417 4.629634 TGACGGTTGATTATGTGTTGCTAG 59.370 41.667 0.00 0.00 0.00 3.42
3235 3438 2.159085 GCTTTCAGTATGTAGGACGCCT 60.159 50.000 3.87 3.87 37.40 5.52
3236 3439 3.679083 GCTTTCAGTATGTAGGACGCCTT 60.679 47.826 3.71 0.00 37.40 4.35
3284 3519 3.331889 AGAATGGTCCCAGTGTGAGAAAT 59.668 43.478 0.00 0.00 0.00 2.17
3292 3527 6.438763 GTCCCAGTGTGAGAAATTTAAACTG 58.561 40.000 3.60 3.60 34.67 3.16
3348 3584 4.024048 CCCTCCAATCCGAATTAATTGACG 60.024 45.833 5.17 3.90 35.35 4.35
3349 3585 4.024048 CCTCCAATCCGAATTAATTGACGG 60.024 45.833 17.87 17.87 45.61 4.79
3375 3642 5.406649 TGAATTGTTTTGACCACACAGAAC 58.593 37.500 0.00 0.00 36.08 3.01
3398 3665 7.504926 ACCCCAGTGTGAGAAAATTATACTA 57.495 36.000 0.00 0.00 0.00 1.82
3402 3740 8.840321 CCCAGTGTGAGAAAATTATACTATTGG 58.160 37.037 0.00 0.00 0.00 3.16
3422 3760 3.268856 TGGTCCGTTTTATATTGGGGGAA 59.731 43.478 0.00 0.00 0.00 3.97
3431 3769 6.952773 TTTATATTGGGGGAAAAGACGATG 57.047 37.500 0.00 0.00 0.00 3.84
3465 3932 1.880796 TGACCGTGTGTTGTCTGCG 60.881 57.895 0.00 0.00 32.67 5.18
3483 3950 0.925267 CGCTGATAAATTGGCGCGTG 60.925 55.000 8.43 0.00 41.08 5.34
3485 3952 1.813896 CTGATAAATTGGCGCGTGTG 58.186 50.000 8.43 0.00 0.00 3.82
3488 3955 1.129624 GATAAATTGGCGCGTGTGTCA 59.870 47.619 8.43 0.00 0.00 3.58
3514 3989 1.475213 CCTCCCTCCGGAATTAGTTGC 60.475 57.143 5.23 0.00 37.86 4.17
3515 3990 0.544697 TCCCTCCGGAATTAGTTGCC 59.455 55.000 5.23 0.00 34.19 4.52
3516 3991 0.254747 CCCTCCGGAATTAGTTGCCA 59.745 55.000 5.23 0.00 0.00 4.92
3517 3992 1.379527 CCTCCGGAATTAGTTGCCAC 58.620 55.000 5.23 0.00 0.00 5.01
3518 3993 1.065418 CCTCCGGAATTAGTTGCCACT 60.065 52.381 5.23 0.00 36.99 4.00
3519 3994 2.280628 CTCCGGAATTAGTTGCCACTC 58.719 52.381 5.23 0.00 34.06 3.51
3520 3995 1.626321 TCCGGAATTAGTTGCCACTCA 59.374 47.619 0.00 0.00 34.06 3.41
3521 3996 2.039216 TCCGGAATTAGTTGCCACTCAA 59.961 45.455 0.00 0.00 34.06 3.02
3522 3997 2.817258 CCGGAATTAGTTGCCACTCAAA 59.183 45.455 0.00 0.00 36.26 2.69
3523 3998 3.119849 CCGGAATTAGTTGCCACTCAAAG 60.120 47.826 0.00 0.00 36.26 2.77
3524 3999 3.670627 CGGAATTAGTTGCCACTCAAAGC 60.671 47.826 0.00 0.00 36.26 3.51
3525 4000 3.492313 GAATTAGTTGCCACTCAAAGCG 58.508 45.455 0.00 0.00 36.26 4.68
3526 4001 1.234821 TTAGTTGCCACTCAAAGCGG 58.765 50.000 0.00 0.00 36.26 5.52
3530 4005 2.665185 GCCACTCAAAGCGGACGT 60.665 61.111 0.00 0.00 0.00 4.34
3545 4020 1.938577 GGACGTATCTAGCACAGACGA 59.061 52.381 4.35 0.00 35.62 4.20
3566 4054 1.152118 TATGATCCGGTCCCTGGGG 60.152 63.158 14.00 2.42 0.00 4.96
3613 4108 1.086696 ATTTCTGTCCATTCCGTGCG 58.913 50.000 0.00 0.00 0.00 5.34
3614 4109 1.573829 TTTCTGTCCATTCCGTGCGC 61.574 55.000 0.00 0.00 0.00 6.09
3615 4110 3.853330 CTGTCCATTCCGTGCGCG 61.853 66.667 13.88 13.88 37.95 6.86
3634 4129 2.347114 CACTGGCGATGGTGGTGA 59.653 61.111 0.00 0.00 0.00 4.02
3668 4163 3.952675 GCACACACACGCACCCAG 61.953 66.667 0.00 0.00 0.00 4.45
3810 4348 3.457234 CTGCGAATTCTGTGTGGCTATA 58.543 45.455 3.52 0.00 0.00 1.31
3811 4349 4.060900 CTGCGAATTCTGTGTGGCTATAT 58.939 43.478 3.52 0.00 0.00 0.86
3881 4429 3.382864 CCCCCTCCCCTTCCCCTA 61.383 72.222 0.00 0.00 0.00 3.53
3882 4430 2.039724 CCCCTCCCCTTCCCCTAC 60.040 72.222 0.00 0.00 0.00 3.18
3883 4431 2.658404 CCCCTCCCCTTCCCCTACT 61.658 68.421 0.00 0.00 0.00 2.57
3884 4432 1.074395 CCCTCCCCTTCCCCTACTC 60.074 68.421 0.00 0.00 0.00 2.59
3885 4433 1.074395 CCTCCCCTTCCCCTACTCC 60.074 68.421 0.00 0.00 0.00 3.85
3886 4434 1.604592 CCTCCCCTTCCCCTACTCCT 61.605 65.000 0.00 0.00 0.00 3.69
3887 4435 0.105401 CTCCCCTTCCCCTACTCCTC 60.105 65.000 0.00 0.00 0.00 3.71
3888 4436 1.074395 CCCCTTCCCCTACTCCTCC 60.074 68.421 0.00 0.00 0.00 4.30
3889 4437 1.604592 CCCCTTCCCCTACTCCTCCT 61.605 65.000 0.00 0.00 0.00 3.69
3890 4438 1.242444 CCCTTCCCCTACTCCTCCTA 58.758 60.000 0.00 0.00 0.00 2.94
3891 4439 1.148236 CCCTTCCCCTACTCCTCCTAG 59.852 61.905 0.00 0.00 0.00 3.02
3892 4440 1.148236 CCTTCCCCTACTCCTCCTAGG 59.852 61.905 0.82 0.82 36.46 3.02
3893 4441 0.561680 TTCCCCTACTCCTCCTAGGC 59.438 60.000 2.96 0.00 34.61 3.93
3926 4474 2.283532 CCCCACCAAATCGGCCAA 60.284 61.111 2.24 0.00 39.03 4.52
3931 4479 2.332654 ACCAAATCGGCCAACGCTC 61.333 57.895 2.24 0.00 43.86 5.03
3943 4491 0.378257 CAACGCTCCCATTCCATTCG 59.622 55.000 0.00 0.00 0.00 3.34
3944 4492 1.376609 AACGCTCCCATTCCATTCGC 61.377 55.000 0.00 0.00 0.00 4.70
3946 4494 1.453745 GCTCCCATTCCATTCGCCA 60.454 57.895 0.00 0.00 0.00 5.69
3949 4497 0.395586 TCCCATTCCATTCGCCAAGG 60.396 55.000 0.00 0.00 0.00 3.61
3951 4499 1.438814 CATTCCATTCGCCAAGGGC 59.561 57.895 0.00 0.00 46.75 5.19
3960 4508 4.400961 GCCAAGGGCTGCTCGTCT 62.401 66.667 0.00 0.00 46.69 4.18
3961 4509 2.125350 CCAAGGGCTGCTCGTCTC 60.125 66.667 0.00 0.00 0.00 3.36
3973 4521 4.244802 CGTCTCGCCGAGGAGAGC 62.245 72.222 15.08 11.21 43.37 4.09
3974 4522 3.134792 GTCTCGCCGAGGAGAGCA 61.135 66.667 15.08 4.85 43.37 4.26
3975 4523 2.826287 TCTCGCCGAGGAGAGCAG 60.826 66.667 15.08 0.00 40.93 4.24
3976 4524 2.826287 CTCGCCGAGGAGAGCAGA 60.826 66.667 6.13 0.00 35.47 4.26
3977 4525 2.826287 TCGCCGAGGAGAGCAGAG 60.826 66.667 0.00 0.00 0.00 3.35
3978 4526 4.567385 CGCCGAGGAGAGCAGAGC 62.567 72.222 0.00 0.00 0.00 4.09
3981 4529 2.051518 CCGAGGAGAGCAGAGCAGT 61.052 63.158 0.00 0.00 0.00 4.40
3982 4530 0.749818 CCGAGGAGAGCAGAGCAGTA 60.750 60.000 0.00 0.00 0.00 2.74
3983 4531 0.380378 CGAGGAGAGCAGAGCAGTAC 59.620 60.000 0.00 0.00 0.00 2.73
3989 4537 1.065782 AGAGCAGAGCAGTACGAGAGA 60.066 52.381 0.00 0.00 0.00 3.10
3990 4538 1.330521 GAGCAGAGCAGTACGAGAGAG 59.669 57.143 0.00 0.00 0.00 3.20
3991 4539 1.065782 AGCAGAGCAGTACGAGAGAGA 60.066 52.381 0.00 0.00 0.00 3.10
3992 4540 1.740585 GCAGAGCAGTACGAGAGAGAA 59.259 52.381 0.00 0.00 0.00 2.87
4119 4685 1.835494 CTTCTCCTCGTCCAGGTACA 58.165 55.000 0.00 0.00 43.95 2.90
4161 4727 3.050275 GCCACGTCAAGGCCTGTC 61.050 66.667 5.69 0.00 46.50 3.51
4182 4758 0.106868 TCTCCTTCCTGTATCGGCGA 60.107 55.000 13.87 13.87 0.00 5.54
4244 4823 2.412112 CGACTCGATCCCCGTTCC 59.588 66.667 0.00 0.00 39.75 3.62
4245 4824 2.813200 GACTCGATCCCCGTTCCC 59.187 66.667 0.00 0.00 39.75 3.97
4264 4843 0.459237 CTTCGGCAGCAATCTCGAGT 60.459 55.000 13.13 0.00 33.11 4.18
4265 4844 0.037326 TTCGGCAGCAATCTCGAGTT 60.037 50.000 13.13 0.15 33.11 3.01
4266 4845 0.458543 TCGGCAGCAATCTCGAGTTC 60.459 55.000 13.13 0.32 0.00 3.01
4267 4846 1.746727 CGGCAGCAATCTCGAGTTCG 61.747 60.000 13.13 2.89 41.45 3.95
4268 4847 0.737715 GGCAGCAATCTCGAGTTCGT 60.738 55.000 13.13 0.00 40.80 3.85
4269 4848 0.368227 GCAGCAATCTCGAGTTCGTG 59.632 55.000 13.13 7.57 40.80 4.35
4270 4849 0.368227 CAGCAATCTCGAGTTCGTGC 59.632 55.000 13.13 16.34 40.80 5.34
4271 4850 1.073216 AGCAATCTCGAGTTCGTGCG 61.073 55.000 13.13 0.00 40.84 5.34
4272 4851 1.341802 CAATCTCGAGTTCGTGCGC 59.658 57.895 13.13 0.00 40.80 6.09
4273 4852 2.152699 AATCTCGAGTTCGTGCGCG 61.153 57.895 14.79 14.79 40.80 6.86
4274 4853 4.753877 TCTCGAGTTCGTGCGCGG 62.754 66.667 21.04 2.86 40.80 6.46
4275 4854 4.753877 CTCGAGTTCGTGCGCGGA 62.754 66.667 21.04 8.65 40.80 5.54
4276 4855 4.111016 TCGAGTTCGTGCGCGGAT 62.111 61.111 21.04 5.82 40.80 4.18
4277 4856 3.179265 CGAGTTCGTGCGCGGATT 61.179 61.111 21.04 8.00 38.89 3.01
4278 4857 1.870458 CGAGTTCGTGCGCGGATTA 60.870 57.895 21.04 0.00 38.89 1.75
4279 4858 1.798368 CGAGTTCGTGCGCGGATTAG 61.798 60.000 21.04 4.25 38.89 1.73
4280 4859 0.801067 GAGTTCGTGCGCGGATTAGT 60.801 55.000 21.04 5.97 38.89 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
225 226 9.593565 AAAGAAAGGAAGGAAATGTTATCTCTT 57.406 29.630 0.00 0.00 0.00 2.85
226 227 9.018582 CAAAGAAAGGAAGGAAATGTTATCTCT 57.981 33.333 0.00 0.00 0.00 3.10
227 228 8.797438 ACAAAGAAAGGAAGGAAATGTTATCTC 58.203 33.333 0.00 0.00 0.00 2.75
228 229 8.712228 ACAAAGAAAGGAAGGAAATGTTATCT 57.288 30.769 0.00 0.00 0.00 1.98
232 233 8.923270 TGAATACAAAGAAAGGAAGGAAATGTT 58.077 29.630 0.00 0.00 0.00 2.71
233 234 8.360390 GTGAATACAAAGAAAGGAAGGAAATGT 58.640 33.333 0.00 0.00 0.00 2.71
234 235 8.359642 TGTGAATACAAAGAAAGGAAGGAAATG 58.640 33.333 0.00 0.00 32.88 2.32
235 236 8.477419 TGTGAATACAAAGAAAGGAAGGAAAT 57.523 30.769 0.00 0.00 32.88 2.17
236 237 7.889873 TGTGAATACAAAGAAAGGAAGGAAA 57.110 32.000 0.00 0.00 32.88 3.13
237 238 7.039784 CCATGTGAATACAAAGAAAGGAAGGAA 60.040 37.037 0.00 0.00 40.84 3.36
238 239 6.434028 CCATGTGAATACAAAGAAAGGAAGGA 59.566 38.462 0.00 0.00 40.84 3.36
239 240 6.624423 CCATGTGAATACAAAGAAAGGAAGG 58.376 40.000 0.00 0.00 40.84 3.46
240 241 6.095377 GCCATGTGAATACAAAGAAAGGAAG 58.905 40.000 0.00 0.00 40.84 3.46
241 242 5.538053 TGCCATGTGAATACAAAGAAAGGAA 59.462 36.000 0.00 0.00 40.84 3.36
242 243 5.076182 TGCCATGTGAATACAAAGAAAGGA 58.924 37.500 0.00 0.00 40.84 3.36
243 244 5.389859 TGCCATGTGAATACAAAGAAAGG 57.610 39.130 0.00 0.00 40.84 3.11
244 245 6.449698 AGTTGCCATGTGAATACAAAGAAAG 58.550 36.000 0.00 0.00 40.84 2.62
245 246 6.040278 TGAGTTGCCATGTGAATACAAAGAAA 59.960 34.615 0.00 0.00 40.84 2.52
246 247 5.534278 TGAGTTGCCATGTGAATACAAAGAA 59.466 36.000 0.00 0.00 40.84 2.52
247 248 5.069318 TGAGTTGCCATGTGAATACAAAGA 58.931 37.500 0.00 0.00 40.84 2.52
248 249 5.375417 TGAGTTGCCATGTGAATACAAAG 57.625 39.130 0.00 0.00 40.84 2.77
249 250 5.781210 TTGAGTTGCCATGTGAATACAAA 57.219 34.783 0.00 0.00 40.84 2.83
250 251 5.781210 TTTGAGTTGCCATGTGAATACAA 57.219 34.783 0.00 0.00 40.84 2.41
251 252 5.981088 ATTTGAGTTGCCATGTGAATACA 57.019 34.783 0.00 0.00 41.89 2.29
252 253 6.158598 ACAATTTGAGTTGCCATGTGAATAC 58.841 36.000 2.79 0.00 32.32 1.89
253 254 6.343716 ACAATTTGAGTTGCCATGTGAATA 57.656 33.333 2.79 0.00 32.32 1.75
254 255 5.217978 ACAATTTGAGTTGCCATGTGAAT 57.782 34.783 2.79 0.00 32.32 2.57
255 256 4.669206 ACAATTTGAGTTGCCATGTGAA 57.331 36.364 2.79 0.00 32.32 3.18
256 257 4.218200 CCTACAATTTGAGTTGCCATGTGA 59.782 41.667 2.79 0.00 32.32 3.58
257 258 4.218200 TCCTACAATTTGAGTTGCCATGTG 59.782 41.667 2.79 0.00 32.32 3.21
258 259 4.218417 GTCCTACAATTTGAGTTGCCATGT 59.782 41.667 2.79 0.00 32.32 3.21
259 260 4.380867 GGTCCTACAATTTGAGTTGCCATG 60.381 45.833 2.79 0.00 32.32 3.66
260 261 3.763897 GGTCCTACAATTTGAGTTGCCAT 59.236 43.478 2.79 0.00 32.32 4.40
261 262 3.153919 GGTCCTACAATTTGAGTTGCCA 58.846 45.455 2.79 0.00 32.32 4.92
262 263 3.153919 TGGTCCTACAATTTGAGTTGCC 58.846 45.455 2.79 1.00 32.32 4.52
263 264 4.458989 TCATGGTCCTACAATTTGAGTTGC 59.541 41.667 2.79 0.00 32.32 4.17
264 265 5.473162 TGTCATGGTCCTACAATTTGAGTTG 59.527 40.000 2.79 0.00 35.25 3.16
265 266 5.630121 TGTCATGGTCCTACAATTTGAGTT 58.370 37.500 2.79 0.00 0.00 3.01
266 267 5.241403 TGTCATGGTCCTACAATTTGAGT 57.759 39.130 2.79 0.00 0.00 3.41
267 268 5.939883 TCTTGTCATGGTCCTACAATTTGAG 59.060 40.000 2.79 0.00 33.01 3.02
268 269 5.875224 TCTTGTCATGGTCCTACAATTTGA 58.125 37.500 2.79 0.00 33.01 2.69
269 270 6.764308 ATCTTGTCATGGTCCTACAATTTG 57.236 37.500 0.00 0.00 33.01 2.32
270 271 8.877864 TTAATCTTGTCATGGTCCTACAATTT 57.122 30.769 0.00 0.00 33.01 1.82
271 272 8.877864 TTTAATCTTGTCATGGTCCTACAATT 57.122 30.769 0.00 0.00 33.01 2.32
358 359 9.716531 CTCATAATACAAAGATGCCATCTCTTA 57.283 33.333 7.84 0.34 39.08 2.10
359 360 8.435187 TCTCATAATACAAAGATGCCATCTCTT 58.565 33.333 7.84 2.32 39.08 2.85
360 361 7.971201 TCTCATAATACAAAGATGCCATCTCT 58.029 34.615 7.84 0.00 39.08 3.10
361 362 8.666573 CATCTCATAATACAAAGATGCCATCTC 58.333 37.037 7.84 0.00 38.86 2.75
362 363 8.563123 CATCTCATAATACAAAGATGCCATCT 57.437 34.615 0.08 0.08 38.86 2.90
408 409 9.851686 TGCCATCTCTTAGTATAAAAATGTCAT 57.148 29.630 0.00 0.00 0.00 3.06
409 410 9.851686 ATGCCATCTCTTAGTATAAAAATGTCA 57.148 29.630 0.00 0.00 0.00 3.58
421 422 9.118300 CTCTTGATAAAAATGCCATCTCTTAGT 57.882 33.333 0.00 0.00 0.00 2.24
422 423 9.334947 TCTCTTGATAAAAATGCCATCTCTTAG 57.665 33.333 0.00 0.00 0.00 2.18
423 424 9.857656 ATCTCTTGATAAAAATGCCATCTCTTA 57.142 29.630 0.00 0.00 0.00 2.10
424 425 8.630917 CATCTCTTGATAAAAATGCCATCTCTT 58.369 33.333 0.00 0.00 0.00 2.85
425 426 7.997223 TCATCTCTTGATAAAAATGCCATCTCT 59.003 33.333 0.00 0.00 0.00 3.10
426 427 8.074972 GTCATCTCTTGATAAAAATGCCATCTC 58.925 37.037 0.00 0.00 36.54 2.75
427 428 7.558807 TGTCATCTCTTGATAAAAATGCCATCT 59.441 33.333 0.00 0.00 36.54 2.90
428 429 7.709947 TGTCATCTCTTGATAAAAATGCCATC 58.290 34.615 0.00 0.00 36.54 3.51
429 430 7.649533 TGTCATCTCTTGATAAAAATGCCAT 57.350 32.000 0.00 0.00 36.54 4.40
430 431 7.649533 ATGTCATCTCTTGATAAAAATGCCA 57.350 32.000 0.00 0.00 36.54 4.92
431 432 8.937634 AAATGTCATCTCTTGATAAAAATGCC 57.062 30.769 0.00 0.00 36.54 4.40
478 479 9.620259 AAAATGCCACCTCTTAATAAACAAAAA 57.380 25.926 0.00 0.00 0.00 1.94
479 480 9.620259 AAAAATGCCACCTCTTAATAAACAAAA 57.380 25.926 0.00 0.00 0.00 2.44
518 519 5.240891 TGCCATGTGAACACAAAAGAAAAA 58.759 33.333 11.60 0.00 45.41 1.94
519 520 4.825422 TGCCATGTGAACACAAAAGAAAA 58.175 34.783 11.60 0.00 45.41 2.29
520 521 4.462508 TGCCATGTGAACACAAAAGAAA 57.537 36.364 11.60 0.00 45.41 2.52
521 522 4.081752 AGTTGCCATGTGAACACAAAAGAA 60.082 37.500 11.60 1.29 45.41 2.52
522 523 3.446873 AGTTGCCATGTGAACACAAAAGA 59.553 39.130 11.60 0.00 45.41 2.52
523 524 3.784338 AGTTGCCATGTGAACACAAAAG 58.216 40.909 11.60 5.09 45.41 2.27
524 525 3.194329 TGAGTTGCCATGTGAACACAAAA 59.806 39.130 11.60 2.55 45.41 2.44
525 526 2.757314 TGAGTTGCCATGTGAACACAAA 59.243 40.909 11.60 0.00 45.41 2.83
526 527 2.373224 TGAGTTGCCATGTGAACACAA 58.627 42.857 11.60 0.00 45.41 3.33
527 528 2.049888 TGAGTTGCCATGTGAACACA 57.950 45.000 10.04 10.04 46.44 3.72
528 529 3.435105 TTTGAGTTGCCATGTGAACAC 57.565 42.857 6.80 0.00 0.00 3.32
529 530 4.141981 ACAATTTGAGTTGCCATGTGAACA 60.142 37.500 2.79 0.00 32.32 3.18
530 531 4.370917 ACAATTTGAGTTGCCATGTGAAC 58.629 39.130 2.79 0.00 32.32 3.18
531 532 4.669206 ACAATTTGAGTTGCCATGTGAA 57.331 36.364 2.79 0.00 32.32 3.18
532 533 4.218200 CCTACAATTTGAGTTGCCATGTGA 59.782 41.667 2.79 0.00 32.32 3.58
533 534 4.218200 TCCTACAATTTGAGTTGCCATGTG 59.782 41.667 2.79 0.00 32.32 3.21
534 535 4.218417 GTCCTACAATTTGAGTTGCCATGT 59.782 41.667 2.79 0.00 32.32 3.21
535 536 4.380867 GGTCCTACAATTTGAGTTGCCATG 60.381 45.833 2.79 0.00 32.32 3.66
536 537 3.763897 GGTCCTACAATTTGAGTTGCCAT 59.236 43.478 2.79 0.00 32.32 4.40
537 538 3.153919 GGTCCTACAATTTGAGTTGCCA 58.846 45.455 2.79 0.00 32.32 4.92
538 539 3.153919 TGGTCCTACAATTTGAGTTGCC 58.846 45.455 2.79 1.00 32.32 4.52
539 540 4.458989 TCATGGTCCTACAATTTGAGTTGC 59.541 41.667 2.79 0.00 32.32 4.17
540 541 5.473162 TGTCATGGTCCTACAATTTGAGTTG 59.527 40.000 2.79 0.00 35.25 3.16
541 542 5.630121 TGTCATGGTCCTACAATTTGAGTT 58.370 37.500 2.79 0.00 0.00 3.01
542 543 5.241403 TGTCATGGTCCTACAATTTGAGT 57.759 39.130 2.79 0.00 0.00 3.41
543 544 5.939883 TCTTGTCATGGTCCTACAATTTGAG 59.060 40.000 2.79 0.00 33.01 3.02
544 545 5.875224 TCTTGTCATGGTCCTACAATTTGA 58.125 37.500 2.79 0.00 33.01 2.69
545 546 6.764308 ATCTTGTCATGGTCCTACAATTTG 57.236 37.500 0.00 0.00 33.01 2.32
546 547 8.877864 TTAATCTTGTCATGGTCCTACAATTT 57.122 30.769 0.00 0.00 33.01 1.82
547 548 8.877864 TTTAATCTTGTCATGGTCCTACAATT 57.122 30.769 0.00 0.00 33.01 2.32
587 588 9.720769 CCTCTAATATCATAAATTAACCGTGGT 57.279 33.333 0.00 0.00 0.00 4.16
588 589 9.938280 TCCTCTAATATCATAAATTAACCGTGG 57.062 33.333 0.00 0.00 0.00 4.94
590 591 9.635520 CGTCCTCTAATATCATAAATTAACCGT 57.364 33.333 0.00 0.00 0.00 4.83
591 592 9.850628 TCGTCCTCTAATATCATAAATTAACCG 57.149 33.333 0.00 0.00 0.00 4.44
600 601 9.297037 TGAAAGATGTCGTCCTCTAATATCATA 57.703 33.333 0.00 0.00 0.00 2.15
601 602 8.183104 TGAAAGATGTCGTCCTCTAATATCAT 57.817 34.615 0.00 0.00 0.00 2.45
602 603 7.582667 TGAAAGATGTCGTCCTCTAATATCA 57.417 36.000 0.00 0.00 0.00 2.15
606 607 9.838339 AATTTATGAAAGATGTCGTCCTCTAAT 57.162 29.630 0.00 0.00 0.00 1.73
607 608 9.098355 CAATTTATGAAAGATGTCGTCCTCTAA 57.902 33.333 0.00 0.00 0.00 2.10
608 609 8.474831 TCAATTTATGAAAGATGTCGTCCTCTA 58.525 33.333 0.00 0.00 34.30 2.43
609 610 7.331026 TCAATTTATGAAAGATGTCGTCCTCT 58.669 34.615 0.00 0.00 34.30 3.69
610 611 7.539712 TCAATTTATGAAAGATGTCGTCCTC 57.460 36.000 0.00 0.00 34.30 3.71
611 612 6.037610 GCTCAATTTATGAAAGATGTCGTCCT 59.962 38.462 0.00 0.00 37.67 3.85
612 613 6.195165 GCTCAATTTATGAAAGATGTCGTCC 58.805 40.000 0.00 0.00 37.67 4.79
613 614 6.037610 AGGCTCAATTTATGAAAGATGTCGTC 59.962 38.462 0.00 0.00 37.67 4.20
614 615 5.882557 AGGCTCAATTTATGAAAGATGTCGT 59.117 36.000 0.00 0.00 37.67 4.34
615 616 6.369059 AGGCTCAATTTATGAAAGATGTCG 57.631 37.500 0.00 0.00 37.67 4.35
616 617 6.474751 GCAAGGCTCAATTTATGAAAGATGTC 59.525 38.462 0.00 0.00 37.67 3.06
617 618 6.071221 TGCAAGGCTCAATTTATGAAAGATGT 60.071 34.615 0.00 0.00 37.67 3.06
618 619 6.334989 TGCAAGGCTCAATTTATGAAAGATG 58.665 36.000 0.00 0.00 37.67 2.90
619 620 6.534475 TGCAAGGCTCAATTTATGAAAGAT 57.466 33.333 0.00 0.00 37.67 2.40
620 621 5.981088 TGCAAGGCTCAATTTATGAAAGA 57.019 34.783 0.00 0.00 37.67 2.52
621 622 7.605410 AAATGCAAGGCTCAATTTATGAAAG 57.395 32.000 0.00 0.00 37.67 2.62
622 623 7.982761 AAAATGCAAGGCTCAATTTATGAAA 57.017 28.000 0.00 0.00 37.67 2.69
623 624 7.982761 AAAAATGCAAGGCTCAATTTATGAA 57.017 28.000 0.00 0.00 37.67 2.57
678 679 8.759481 ATGTCATAAACCCCAAAAACATTTTT 57.241 26.923 0.00 0.00 40.75 1.94
679 680 8.759481 AATGTCATAAACCCCAAAAACATTTT 57.241 26.923 0.00 0.00 33.58 1.82
680 681 8.759481 AAATGTCATAAACCCCAAAAACATTT 57.241 26.923 0.00 0.00 39.78 2.32
681 682 8.759481 AAAATGTCATAAACCCCAAAAACATT 57.241 26.923 0.00 0.00 37.62 2.71
682 683 8.759481 AAAAATGTCATAAACCCCAAAAACAT 57.241 26.923 0.00 0.00 0.00 2.71
683 684 9.853177 ATAAAAATGTCATAAACCCCAAAAACA 57.147 25.926 0.00 0.00 0.00 2.83
712 713 8.626526 CCAAAAAGTCTAGTTAGGTGCTTTTTA 58.373 33.333 17.94 0.00 41.32 1.52
713 714 7.417456 CCCAAAAAGTCTAGTTAGGTGCTTTTT 60.417 37.037 15.43 15.43 42.88 1.94
714 715 6.040504 CCCAAAAAGTCTAGTTAGGTGCTTTT 59.959 38.462 0.00 0.00 37.64 2.27
715 716 5.535030 CCCAAAAAGTCTAGTTAGGTGCTTT 59.465 40.000 0.00 0.00 0.00 3.51
716 717 5.070685 CCCAAAAAGTCTAGTTAGGTGCTT 58.929 41.667 0.00 0.00 0.00 3.91
717 718 4.104261 ACCCAAAAAGTCTAGTTAGGTGCT 59.896 41.667 0.00 0.00 0.00 4.40
718 719 4.395625 ACCCAAAAAGTCTAGTTAGGTGC 58.604 43.478 0.00 0.00 0.00 5.01
719 720 5.617252 TGACCCAAAAAGTCTAGTTAGGTG 58.383 41.667 0.00 0.00 35.21 4.00
720 721 5.899631 TGACCCAAAAAGTCTAGTTAGGT 57.100 39.130 0.00 0.00 35.21 3.08
721 722 7.309194 CCAATTGACCCAAAAAGTCTAGTTAGG 60.309 40.741 7.12 0.00 35.21 2.69
722 723 7.309194 CCCAATTGACCCAAAAAGTCTAGTTAG 60.309 40.741 7.12 0.00 35.21 2.34
723 724 6.492087 CCCAATTGACCCAAAAAGTCTAGTTA 59.508 38.462 7.12 0.00 35.21 2.24
724 725 5.304357 CCCAATTGACCCAAAAAGTCTAGTT 59.696 40.000 7.12 0.00 35.21 2.24
725 726 4.832823 CCCAATTGACCCAAAAAGTCTAGT 59.167 41.667 7.12 0.00 35.21 2.57
726 727 4.220602 CCCCAATTGACCCAAAAAGTCTAG 59.779 45.833 7.12 0.00 35.21 2.43
727 728 4.156477 CCCCAATTGACCCAAAAAGTCTA 58.844 43.478 7.12 0.00 35.21 2.59
728 729 2.972021 CCCCAATTGACCCAAAAAGTCT 59.028 45.455 7.12 0.00 35.21 3.24
729 730 2.038426 CCCCCAATTGACCCAAAAAGTC 59.962 50.000 7.12 0.00 34.72 3.01
730 731 2.054021 CCCCCAATTGACCCAAAAAGT 58.946 47.619 7.12 0.00 0.00 2.66
731 732 2.054021 ACCCCCAATTGACCCAAAAAG 58.946 47.619 7.12 0.00 0.00 2.27
732 733 2.173569 CAACCCCCAATTGACCCAAAAA 59.826 45.455 7.12 0.00 0.00 1.94
733 734 1.771255 CAACCCCCAATTGACCCAAAA 59.229 47.619 7.12 0.00 0.00 2.44
734 735 1.428869 CAACCCCCAATTGACCCAAA 58.571 50.000 7.12 0.00 0.00 3.28
735 736 1.124477 GCAACCCCCAATTGACCCAA 61.124 55.000 7.12 0.00 0.00 4.12
736 737 1.535202 GCAACCCCCAATTGACCCA 60.535 57.895 7.12 0.00 0.00 4.51
737 738 2.290287 GGCAACCCCCAATTGACCC 61.290 63.158 7.12 0.00 0.00 4.46
738 739 3.387716 GGCAACCCCCAATTGACC 58.612 61.111 7.12 0.00 0.00 4.02
750 751 1.479389 CCCCATTCTCCATAGGGCAAC 60.479 57.143 0.00 0.00 40.07 4.17
751 752 0.852842 CCCCATTCTCCATAGGGCAA 59.147 55.000 0.00 0.00 40.07 4.52
752 753 0.029163 TCCCCATTCTCCATAGGGCA 60.029 55.000 0.00 0.00 40.07 5.36
753 754 1.149101 TTCCCCATTCTCCATAGGGC 58.851 55.000 0.00 0.00 40.07 5.19
754 755 3.971468 TTTTCCCCATTCTCCATAGGG 57.029 47.619 0.00 0.00 41.12 3.53
791 792 9.381033 TCCGTCTACCAATATTTTCGATTTAAA 57.619 29.630 0.00 0.00 0.00 1.52
792 793 8.945481 TCCGTCTACCAATATTTTCGATTTAA 57.055 30.769 0.00 0.00 0.00 1.52
794 795 8.985805 GTATCCGTCTACCAATATTTTCGATTT 58.014 33.333 0.00 0.00 0.00 2.17
795 796 8.365647 AGTATCCGTCTACCAATATTTTCGATT 58.634 33.333 0.00 0.00 0.00 3.34
796 797 7.893658 AGTATCCGTCTACCAATATTTTCGAT 58.106 34.615 0.00 0.00 0.00 3.59
797 798 7.230108 AGAGTATCCGTCTACCAATATTTTCGA 59.770 37.037 0.00 0.00 33.66 3.71
798 799 7.326305 CAGAGTATCCGTCTACCAATATTTTCG 59.674 40.741 0.00 0.00 33.66 3.46
799 800 8.358148 TCAGAGTATCCGTCTACCAATATTTTC 58.642 37.037 0.00 0.00 33.66 2.29
800 801 8.142551 GTCAGAGTATCCGTCTACCAATATTTT 58.857 37.037 0.00 0.00 33.66 1.82
801 802 7.255871 GGTCAGAGTATCCGTCTACCAATATTT 60.256 40.741 0.00 0.00 33.66 1.40
802 803 6.208994 GGTCAGAGTATCCGTCTACCAATATT 59.791 42.308 0.00 0.00 33.66 1.28
803 804 5.711036 GGTCAGAGTATCCGTCTACCAATAT 59.289 44.000 0.00 0.00 33.66 1.28
804 805 5.068636 GGTCAGAGTATCCGTCTACCAATA 58.931 45.833 0.00 0.00 33.66 1.90
805 806 3.890147 GGTCAGAGTATCCGTCTACCAAT 59.110 47.826 0.00 0.00 33.66 3.16
806 807 3.285484 GGTCAGAGTATCCGTCTACCAA 58.715 50.000 0.00 0.00 33.66 3.67
807 808 2.240414 TGGTCAGAGTATCCGTCTACCA 59.760 50.000 0.00 0.00 33.66 3.25
808 809 2.879646 CTGGTCAGAGTATCCGTCTACC 59.120 54.545 0.00 0.00 33.66 3.18
809 810 2.291190 GCTGGTCAGAGTATCCGTCTAC 59.709 54.545 1.65 0.00 33.66 2.59
824 825 2.052690 TCCCGTAGCTCAGCTGGTC 61.053 63.158 10.31 5.93 40.10 4.02
884 891 5.518847 CGCATCGTTTTCTCTACTCCAATAA 59.481 40.000 0.00 0.00 0.00 1.40
885 892 5.041287 CGCATCGTTTTCTCTACTCCAATA 58.959 41.667 0.00 0.00 0.00 1.90
892 899 3.251571 AGGTTCGCATCGTTTTCTCTAC 58.748 45.455 0.00 0.00 0.00 2.59
930 954 1.768870 CCGGATGGTTAGGGACAGAAT 59.231 52.381 0.00 0.00 0.00 2.40
950 974 0.888619 TATCCGGCGGATCAGATCAC 59.111 55.000 41.83 3.63 42.11 3.06
1007 1036 3.733960 GTTTCGGCAAGGTCGGGC 61.734 66.667 0.00 0.00 0.00 6.13
1016 1045 1.710996 TTGGAAGGAGGGTTTCGGCA 61.711 55.000 0.00 0.00 0.00 5.69
1027 1056 2.547990 GGGACTAGGAGTTTGGAAGGA 58.452 52.381 0.00 0.00 0.00 3.36
1048 1089 2.203029 GATCGCCTTCGGGGTTCC 60.203 66.667 0.00 0.00 36.95 3.62
1274 1319 5.933790 TGACAAGCATAACACGGAATAAAC 58.066 37.500 0.00 0.00 0.00 2.01
1279 1324 5.470437 TGTAAATGACAAGCATAACACGGAA 59.530 36.000 0.00 0.00 35.78 4.30
1316 1363 2.151202 GGCAAAGAGATCACCGAAACA 58.849 47.619 0.00 0.00 0.00 2.83
1347 1394 7.230913 GCATCCTCTTAGAGTATTGGTACTACA 59.769 40.741 8.55 0.00 41.19 2.74
1374 1429 3.616560 GCATTTCACCGAACACCTAGAGA 60.617 47.826 0.00 0.00 0.00 3.10
1445 1500 9.708092 GTAATCCTATGAACTACTTATGTTCCC 57.292 37.037 0.00 0.00 42.04 3.97
1455 1510 4.940463 TGCACCGTAATCCTATGAACTAC 58.060 43.478 0.00 0.00 0.00 2.73
1457 1512 3.181465 CCTGCACCGTAATCCTATGAACT 60.181 47.826 0.00 0.00 0.00 3.01
1458 1513 3.131396 CCTGCACCGTAATCCTATGAAC 58.869 50.000 0.00 0.00 0.00 3.18
1459 1514 2.769663 ACCTGCACCGTAATCCTATGAA 59.230 45.455 0.00 0.00 0.00 2.57
1460 1515 2.364324 GACCTGCACCGTAATCCTATGA 59.636 50.000 0.00 0.00 0.00 2.15
1461 1516 2.102420 TGACCTGCACCGTAATCCTATG 59.898 50.000 0.00 0.00 0.00 2.23
1768 1957 5.757320 AGAACAATCTGTCTGAAGAACACAG 59.243 40.000 0.00 0.00 33.59 3.66
1810 1999 6.675026 CAGCAATGATGATTATGTACAAGGG 58.325 40.000 0.00 0.00 0.00 3.95
1826 2015 2.519771 AAGAATGAGGGCAGCAATGA 57.480 45.000 0.00 0.00 0.00 2.57
1940 2129 7.275779 GTCGACAAGCATATCTCAAGTTCTAAA 59.724 37.037 11.55 0.00 0.00 1.85
2076 2265 6.597280 ACCGGTGTAACAGTTGTTTAACTAAA 59.403 34.615 6.12 0.00 45.12 1.85
2095 2284 2.742053 CAGGTTTAACATCTGACCGGTG 59.258 50.000 14.63 0.00 37.26 4.94
2102 2291 8.378172 TCACTAAAAGTCAGGTTTAACATCTG 57.622 34.615 0.00 0.00 0.00 2.90
2202 2392 6.350445 GGAACATCAGTGCCATATGTTTTTCT 60.350 38.462 8.76 0.00 43.70 2.52
2341 2531 5.597182 GGGAAGATAAAAATACCCTGGTTCC 59.403 44.000 0.00 0.00 35.03 3.62
2389 2579 5.372343 ACATGTGGCTTCAATGACCTATA 57.628 39.130 0.00 0.00 0.00 1.31
2457 2647 5.532032 TGAGAGCTTGTGAAATGTCAAATGA 59.468 36.000 0.00 0.00 34.87 2.57
2546 2736 3.746940 TGTGGCTCCACTTAAAACCTAC 58.253 45.455 18.72 0.00 46.30 3.18
2551 2741 7.309744 CCTGAAATAATGTGGCTCCACTTAAAA 60.310 37.037 18.72 0.00 46.30 1.52
2555 2745 4.019174 CCTGAAATAATGTGGCTCCACTT 58.981 43.478 18.72 10.63 46.30 3.16
2568 2758 6.493115 TGAAATTCTGAAGGTGCCTGAAATAA 59.507 34.615 0.00 0.00 0.00 1.40
2569 2759 6.009589 TGAAATTCTGAAGGTGCCTGAAATA 58.990 36.000 0.00 0.00 0.00 1.40
2666 2857 3.582647 TGAGGTAGGCAGTTTCTGAATCA 59.417 43.478 0.66 0.00 32.44 2.57
2707 2898 2.955614 ACTAACACGGATCAAAGGACG 58.044 47.619 0.00 0.00 0.00 4.79
2719 2910 9.767684 TGCATGAAAAGAAATATTACTAACACG 57.232 29.630 0.00 0.00 0.00 4.49
2912 3107 0.248990 CGCAGCACCTGAAAAAGCAA 60.249 50.000 0.00 0.00 32.44 3.91
2913 3108 1.359833 CGCAGCACCTGAAAAAGCA 59.640 52.632 0.00 0.00 32.44 3.91
3020 3215 1.802960 GAGATGTCACACCACAGCTTG 59.197 52.381 0.00 0.00 43.08 4.01
3025 3220 2.235891 ACTACGAGATGTCACACCACA 58.764 47.619 0.00 0.00 0.00 4.17
3030 3225 4.703093 TCCATTGTACTACGAGATGTCACA 59.297 41.667 0.00 0.00 0.00 3.58
3031 3226 5.244785 TCCATTGTACTACGAGATGTCAC 57.755 43.478 0.00 0.00 0.00 3.67
3032 3227 5.907866 TTCCATTGTACTACGAGATGTCA 57.092 39.130 0.00 0.00 0.00 3.58
3039 3234 4.712829 TCTGGGATTTCCATTGTACTACGA 59.287 41.667 0.00 0.00 46.01 3.43
3040 3235 5.018539 TCTGGGATTTCCATTGTACTACG 57.981 43.478 0.00 0.00 46.01 3.51
3046 3241 6.271585 AGTGATATCTGGGATTTCCATTGT 57.728 37.500 3.98 0.00 46.01 2.71
3060 3255 6.172136 AGCAGCAGAATACAAGTGATATCT 57.828 37.500 3.98 0.00 0.00 1.98
3061 3256 8.034215 AGATAGCAGCAGAATACAAGTGATATC 58.966 37.037 0.00 0.00 34.84 1.63
3062 3257 7.905265 AGATAGCAGCAGAATACAAGTGATAT 58.095 34.615 0.00 0.00 0.00 1.63
3064 3259 6.041865 AGAGATAGCAGCAGAATACAAGTGAT 59.958 38.462 0.00 0.00 0.00 3.06
3065 3260 5.362143 AGAGATAGCAGCAGAATACAAGTGA 59.638 40.000 0.00 0.00 0.00 3.41
3066 3261 5.599732 AGAGATAGCAGCAGAATACAAGTG 58.400 41.667 0.00 0.00 0.00 3.16
3067 3262 5.867903 AGAGATAGCAGCAGAATACAAGT 57.132 39.130 0.00 0.00 0.00 3.16
3068 3263 6.538021 ACAAAGAGATAGCAGCAGAATACAAG 59.462 38.462 0.00 0.00 0.00 3.16
3093 3290 6.842437 AAAGTCTACATAGAGAACTGCTCA 57.158 37.500 0.00 0.00 46.45 4.26
3123 3322 4.750952 TTCGCCACGAAATTATGAAACA 57.249 36.364 0.00 0.00 43.00 2.83
3135 3334 0.666274 CAGCACTAAGTTCGCCACGA 60.666 55.000 0.00 0.00 0.00 4.35
3137 3336 0.602905 ACCAGCACTAAGTTCGCCAC 60.603 55.000 0.00 0.00 0.00 5.01
3158 3358 1.898574 CACCCACACTCCTGGCAAC 60.899 63.158 0.00 0.00 0.00 4.17
3169 3369 0.900421 CATCTCAGAGAGCACCCACA 59.100 55.000 6.24 0.00 0.00 4.17
3194 3394 3.623060 AGCTAGCAACACATAATCAACCG 59.377 43.478 18.83 0.00 0.00 4.44
3214 3417 2.159085 AGGCGTCCTACATACTGAAAGC 60.159 50.000 0.00 0.00 29.72 3.51
3263 3466 2.859165 TTCTCACACTGGGACCATTC 57.141 50.000 0.00 0.00 0.00 2.67
3284 3519 7.911205 CCATACGAAACAGAACAACAGTTTAAA 59.089 33.333 0.00 0.00 38.10 1.52
3292 3527 5.427036 TTTCCCATACGAAACAGAACAAC 57.573 39.130 0.00 0.00 0.00 3.32
3348 3584 5.355596 TGTGTGGTCAAAACAATTCATTCC 58.644 37.500 0.00 0.00 0.00 3.01
3349 3585 6.272318 TCTGTGTGGTCAAAACAATTCATTC 58.728 36.000 0.00 0.00 0.00 2.67
3350 3586 6.219417 TCTGTGTGGTCAAAACAATTCATT 57.781 33.333 0.00 0.00 0.00 2.57
3352 3588 5.406649 GTTCTGTGTGGTCAAAACAATTCA 58.593 37.500 0.00 0.00 0.00 2.57
3375 3642 8.840321 CAATAGTATAATTTTCTCACACTGGGG 58.160 37.037 0.00 0.00 0.00 4.96
3398 3665 4.079096 TCCCCCAATATAAAACGGACCAAT 60.079 41.667 0.00 0.00 0.00 3.16
3402 3740 5.653330 TCTTTTCCCCCAATATAAAACGGAC 59.347 40.000 0.00 0.00 0.00 4.79
3410 3748 5.897851 TCATCGTCTTTTCCCCCAATATA 57.102 39.130 0.00 0.00 0.00 0.86
3422 3760 5.982890 ACCAAATCCAATTCATCGTCTTT 57.017 34.783 0.00 0.00 0.00 2.52
3431 3769 3.005367 ACGGTCACAACCAAATCCAATTC 59.995 43.478 0.00 0.00 46.86 2.17
3465 3932 0.098728 ACACGCGCCAATTTATCAGC 59.901 50.000 5.73 0.00 0.00 4.26
3480 3947 0.460311 GGGAGGGAGTATGACACACG 59.540 60.000 0.00 0.00 0.00 4.49
3483 3950 1.415200 GGAGGGAGGGAGTATGACAC 58.585 60.000 0.00 0.00 0.00 3.67
3485 3952 2.734893 CGGAGGGAGGGAGTATGAC 58.265 63.158 0.00 0.00 0.00 3.06
3515 3990 2.279582 AGATACGTCCGCTTTGAGTG 57.720 50.000 0.00 0.00 0.00 3.51
3516 3991 2.223525 GCTAGATACGTCCGCTTTGAGT 60.224 50.000 0.00 0.00 0.00 3.41
3517 3992 2.223502 TGCTAGATACGTCCGCTTTGAG 60.224 50.000 0.00 0.00 0.00 3.02
3518 3993 1.746787 TGCTAGATACGTCCGCTTTGA 59.253 47.619 0.00 0.00 0.00 2.69
3519 3994 1.852895 GTGCTAGATACGTCCGCTTTG 59.147 52.381 0.00 0.00 0.00 2.77
3520 3995 1.475280 TGTGCTAGATACGTCCGCTTT 59.525 47.619 0.00 0.00 0.00 3.51
3521 3996 1.065701 CTGTGCTAGATACGTCCGCTT 59.934 52.381 0.00 0.00 0.00 4.68
3522 3997 0.663688 CTGTGCTAGATACGTCCGCT 59.336 55.000 0.00 0.00 0.00 5.52
3523 3998 0.661552 TCTGTGCTAGATACGTCCGC 59.338 55.000 0.00 0.00 0.00 5.54
3524 3999 1.332993 CGTCTGTGCTAGATACGTCCG 60.333 57.143 0.00 0.00 37.83 4.79
3525 4000 1.938577 TCGTCTGTGCTAGATACGTCC 59.061 52.381 0.00 0.00 37.83 4.79
3526 4001 3.063725 ACTTCGTCTGTGCTAGATACGTC 59.936 47.826 0.00 0.00 37.83 4.34
3530 4005 6.149640 GGATCATACTTCGTCTGTGCTAGATA 59.850 42.308 0.00 0.00 37.83 1.98
3545 4020 1.424638 CCAGGGACCGGATCATACTT 58.575 55.000 9.46 0.00 0.00 2.24
3566 4054 2.537625 CGGATCTCGCATCTGTTTCTTC 59.462 50.000 0.00 0.00 0.00 2.87
3573 4061 1.300465 CACCCGGATCTCGCATCTG 60.300 63.158 0.73 0.00 37.59 2.90
3615 4110 4.722700 ACCACCATCGCCAGTGCC 62.723 66.667 0.00 0.00 32.48 5.01
3616 4111 3.434319 CACCACCATCGCCAGTGC 61.434 66.667 0.00 0.00 32.48 4.40
3617 4112 1.742880 CTCACCACCATCGCCAGTG 60.743 63.158 0.00 0.00 0.00 3.66
3618 4113 2.665000 CTCACCACCATCGCCAGT 59.335 61.111 0.00 0.00 0.00 4.00
3619 4114 2.821366 GCTCACCACCATCGCCAG 60.821 66.667 0.00 0.00 0.00 4.85
3620 4115 4.408821 GGCTCACCACCATCGCCA 62.409 66.667 0.00 0.00 40.41 5.69
3668 4163 2.507769 CGTTTCGTCGCCTACCCC 60.508 66.667 0.00 0.00 0.00 4.95
3810 4348 0.760567 TATCTGCTCGCTGACCCCAT 60.761 55.000 0.46 0.00 0.00 4.00
3811 4349 0.975556 TTATCTGCTCGCTGACCCCA 60.976 55.000 0.46 0.00 0.00 4.96
3874 4422 0.561680 GCCTAGGAGGAGTAGGGGAA 59.438 60.000 14.75 0.00 37.67 3.97
3875 4423 2.252507 GCCTAGGAGGAGTAGGGGA 58.747 63.158 14.75 0.00 37.67 4.81
3876 4424 1.228613 CGCCTAGGAGGAGTAGGGG 60.229 68.421 14.75 0.00 42.34 4.79
3878 4426 2.262303 CGCGCCTAGGAGGAGTAGG 61.262 68.421 14.75 0.00 37.67 3.18
3880 4428 2.905880 GCGCGCCTAGGAGGAGTA 60.906 66.667 23.24 0.00 37.67 2.59
3926 4474 1.819632 GCGAATGGAATGGGAGCGT 60.820 57.895 0.00 0.00 0.00 5.07
3931 4479 1.394266 CCCTTGGCGAATGGAATGGG 61.394 60.000 0.00 0.00 0.00 4.00
3944 4492 2.125350 GAGACGAGCAGCCCTTGG 60.125 66.667 0.00 0.00 0.00 3.61
3946 4494 4.443266 GCGAGACGAGCAGCCCTT 62.443 66.667 0.00 0.00 34.19 3.95
3955 4503 2.511829 CTCTCCTCGGCGAGACGA 60.512 66.667 36.47 27.46 41.13 4.20
3956 4504 4.244802 GCTCTCCTCGGCGAGACG 62.245 72.222 36.47 25.10 35.09 4.18
3957 4505 3.119709 CTGCTCTCCTCGGCGAGAC 62.120 68.421 36.47 19.75 35.09 3.36
3958 4506 2.826287 CTGCTCTCCTCGGCGAGA 60.826 66.667 36.47 21.14 37.35 4.04
3959 4507 2.826287 TCTGCTCTCCTCGGCGAG 60.826 66.667 29.16 29.16 0.00 5.03
3960 4508 2.826287 CTCTGCTCTCCTCGGCGA 60.826 66.667 10.14 10.14 0.00 5.54
3961 4509 4.567385 GCTCTGCTCTCCTCGGCG 62.567 72.222 0.00 0.00 0.00 6.46
3964 4512 0.380378 GTACTGCTCTGCTCTCCTCG 59.620 60.000 0.00 0.00 0.00 4.63
3965 4513 0.380378 CGTACTGCTCTGCTCTCCTC 59.620 60.000 0.00 0.00 0.00 3.71
3966 4514 0.034960 TCGTACTGCTCTGCTCTCCT 60.035 55.000 0.00 0.00 0.00 3.69
3967 4515 0.380378 CTCGTACTGCTCTGCTCTCC 59.620 60.000 0.00 0.00 0.00 3.71
3973 4521 4.630894 AATTCTCTCTCGTACTGCTCTG 57.369 45.455 0.00 0.00 0.00 3.35
3974 4522 4.142271 CCAAATTCTCTCTCGTACTGCTCT 60.142 45.833 0.00 0.00 0.00 4.09
3975 4523 4.109050 CCAAATTCTCTCTCGTACTGCTC 58.891 47.826 0.00 0.00 0.00 4.26
3976 4524 3.511934 ACCAAATTCTCTCTCGTACTGCT 59.488 43.478 0.00 0.00 0.00 4.24
3977 4525 3.851098 ACCAAATTCTCTCTCGTACTGC 58.149 45.455 0.00 0.00 0.00 4.40
3978 4526 4.627467 CCAACCAAATTCTCTCTCGTACTG 59.373 45.833 0.00 0.00 0.00 2.74
3981 4529 4.562757 CCACCAACCAAATTCTCTCTCGTA 60.563 45.833 0.00 0.00 0.00 3.43
3982 4530 3.403038 CACCAACCAAATTCTCTCTCGT 58.597 45.455 0.00 0.00 0.00 4.18
3983 4531 2.744202 CCACCAACCAAATTCTCTCTCG 59.256 50.000 0.00 0.00 0.00 4.04
3989 4537 1.953686 CGTGTCCACCAACCAAATTCT 59.046 47.619 0.00 0.00 0.00 2.40
3990 4538 1.601914 GCGTGTCCACCAACCAAATTC 60.602 52.381 0.00 0.00 0.00 2.17
3991 4539 0.387565 GCGTGTCCACCAACCAAATT 59.612 50.000 0.00 0.00 0.00 1.82
3992 4540 0.753479 TGCGTGTCCACCAACCAAAT 60.753 50.000 0.00 0.00 0.00 2.32
4096 4662 2.035155 TGGACGAGGAGAAGCCGA 59.965 61.111 0.00 0.00 43.43 5.54
4119 4685 2.606826 GGAGGGGAAGTGGACGGT 60.607 66.667 0.00 0.00 0.00 4.83
4159 4725 1.957877 CCGATACAGGAAGGAGAGGAC 59.042 57.143 0.00 0.00 0.00 3.85
4161 4727 0.676736 GCCGATACAGGAAGGAGAGG 59.323 60.000 0.00 0.00 0.00 3.69
4245 4824 0.459237 ACTCGAGATTGCTGCCGAAG 60.459 55.000 21.68 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.