Multiple sequence alignment - TraesCS4D01G282000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G282000 chr4D 100.000 5054 0 0 1 5054 453218638 453223691 0.000000e+00 9334.0
1 TraesCS4D01G282000 chr4D 90.441 136 13 0 4755 4890 453223255 453223390 4.020000e-41 180.0
2 TraesCS4D01G282000 chr4D 90.441 136 13 0 4618 4753 453223392 453223527 4.020000e-41 180.0
3 TraesCS4D01G282000 chr4B 91.704 4436 180 70 405 4752 566593895 566598230 0.000000e+00 5980.0
4 TraesCS4D01G282000 chr4B 87.781 311 16 8 4755 5051 566598093 566598395 1.350000e-90 344.0
5 TraesCS4D01G282000 chr4A 90.382 4190 209 68 361 4484 14029086 14025025 0.000000e+00 5326.0
6 TraesCS4D01G282000 chr4A 97.405 501 13 0 4554 5054 14024733 14024233 0.000000e+00 854.0
7 TraesCS4D01G282000 chr4A 84.564 298 28 8 214 510 14063482 14063202 3.850000e-71 279.0
8 TraesCS4D01G282000 chr4A 91.176 136 12 0 4621 4756 14024529 14024394 8.640000e-43 185.0
9 TraesCS4D01G282000 chr4A 90.647 139 13 0 4755 4893 14024669 14024531 8.640000e-43 185.0
10 TraesCS4D01G282000 chr4A 95.098 102 5 0 2 103 14063579 14063478 1.460000e-35 161.0
11 TraesCS4D01G282000 chr1A 75.451 277 54 8 3081 3347 8046837 8047109 6.870000e-24 122.0
12 TraesCS4D01G282000 chr5A 96.667 60 2 0 116 175 333559924 333559865 3.220000e-17 100.0
13 TraesCS4D01G282000 chr3B 96.610 59 1 1 113 171 378987487 378987430 4.160000e-16 97.1
14 TraesCS4D01G282000 chr3B 95.000 60 3 0 116 175 169188598 169188539 1.500000e-15 95.3
15 TraesCS4D01G282000 chr7A 89.474 76 5 2 114 186 684463032 684462957 5.390000e-15 93.5
16 TraesCS4D01G282000 chr7A 76.812 138 26 6 2675 2809 294408915 294409049 7.020000e-09 73.1
17 TraesCS4D01G282000 chr6A 94.828 58 3 0 115 172 257283843 257283900 1.940000e-14 91.6
18 TraesCS4D01G282000 chr7B 77.372 137 27 4 2675 2809 248544538 248544672 1.510000e-10 78.7
19 TraesCS4D01G282000 chr1B 72.085 283 71 4 3081 3356 632421240 632420959 1.510000e-10 78.7
20 TraesCS4D01G282000 chr7D 76.642 137 28 4 2675 2809 268550312 268550446 7.020000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G282000 chr4D 453218638 453223691 5053 False 3231.333333 9334 93.627333 1 5054 3 chr4D.!!$F1 5053
1 TraesCS4D01G282000 chr4B 566593895 566598395 4500 False 3162.000000 5980 89.742500 405 5051 2 chr4B.!!$F1 4646
2 TraesCS4D01G282000 chr4A 14024233 14029086 4853 True 1637.500000 5326 92.402500 361 5054 4 chr4A.!!$R1 4693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
916 936 0.034670 ACTTCTTGGCAGCCCATCTC 60.035 55.0 9.64 0.0 41.78 2.75 F
1559 1612 0.730265 TCGTTGCTGTTTTCGTGCTT 59.270 45.0 0.00 0.0 0.00 3.91 F
2483 2563 0.835941 AGATCAAGCTGGCCTTCGAT 59.164 50.0 3.32 0.0 0.00 3.59 F
2608 2691 1.185618 TGGTCTCGGTCTGAAGGTGG 61.186 60.0 0.00 0.0 0.00 4.61 F
3073 3162 2.254546 ATGGCTTTCTTGTCGTGTCA 57.745 45.0 0.00 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2678 2761 0.533308 TGGCCTTGGTGAACACGTAC 60.533 55.000 3.32 0.0 0.00 3.67 R
3019 3103 0.106335 CAGCTCCATGGCCTCACTAG 59.894 60.000 6.96 0.0 0.00 2.57 R
3506 3599 0.888285 GATGCTACATGGGCCTGCTC 60.888 60.000 4.53 0.0 0.00 4.26 R
3593 3687 1.178534 CCCTCCGTGTTGCCATTGTT 61.179 55.000 0.00 0.0 0.00 2.83 R
4687 5041 1.072806 GCCATCATCCAGATAGGCACA 59.927 52.381 11.09 0.0 43.97 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.135290 TGGAGATAATGTTGCTTGTATTGC 57.865 37.500 0.00 0.00 0.00 3.56
25 26 5.887598 TGGAGATAATGTTGCTTGTATTGCT 59.112 36.000 0.00 0.00 0.00 3.91
26 27 6.183360 TGGAGATAATGTTGCTTGTATTGCTG 60.183 38.462 0.00 0.00 0.00 4.41
27 28 6.038603 GGAGATAATGTTGCTTGTATTGCTGA 59.961 38.462 0.00 0.00 0.00 4.26
28 29 7.395190 AGATAATGTTGCTTGTATTGCTGAA 57.605 32.000 0.00 0.00 0.00 3.02
29 30 7.829725 AGATAATGTTGCTTGTATTGCTGAAA 58.170 30.769 0.00 0.00 0.00 2.69
30 31 8.472413 AGATAATGTTGCTTGTATTGCTGAAAT 58.528 29.630 0.00 0.00 0.00 2.17
31 32 9.090692 GATAATGTTGCTTGTATTGCTGAAATT 57.909 29.630 0.00 0.00 0.00 1.82
32 33 6.956299 ATGTTGCTTGTATTGCTGAAATTC 57.044 33.333 0.00 0.00 0.00 2.17
33 34 5.840715 TGTTGCTTGTATTGCTGAAATTCA 58.159 33.333 0.00 0.00 0.00 2.57
34 35 6.279123 TGTTGCTTGTATTGCTGAAATTCAA 58.721 32.000 0.00 1.17 35.16 2.69
35 36 6.760298 TGTTGCTTGTATTGCTGAAATTCAAA 59.240 30.769 0.00 0.00 35.77 2.69
36 37 6.768029 TGCTTGTATTGCTGAAATTCAAAC 57.232 33.333 0.00 0.00 35.77 2.93
37 38 5.695816 TGCTTGTATTGCTGAAATTCAAACC 59.304 36.000 0.00 0.00 35.77 3.27
38 39 5.928264 GCTTGTATTGCTGAAATTCAAACCT 59.072 36.000 0.00 0.00 35.77 3.50
39 40 7.090173 GCTTGTATTGCTGAAATTCAAACCTA 58.910 34.615 0.00 0.00 35.77 3.08
40 41 7.598493 GCTTGTATTGCTGAAATTCAAACCTAA 59.402 33.333 0.00 0.00 35.77 2.69
41 42 9.474920 CTTGTATTGCTGAAATTCAAACCTAAA 57.525 29.630 0.00 0.00 35.77 1.85
42 43 9.474920 TTGTATTGCTGAAATTCAAACCTAAAG 57.525 29.630 0.00 0.00 33.94 1.85
43 44 8.855110 TGTATTGCTGAAATTCAAACCTAAAGA 58.145 29.630 0.00 0.00 0.00 2.52
44 45 9.691362 GTATTGCTGAAATTCAAACCTAAAGAA 57.309 29.630 0.00 0.00 0.00 2.52
45 46 8.593492 ATTGCTGAAATTCAAACCTAAAGAAC 57.407 30.769 0.00 0.00 0.00 3.01
46 47 7.106439 TGCTGAAATTCAAACCTAAAGAACA 57.894 32.000 0.00 0.00 0.00 3.18
47 48 7.551585 TGCTGAAATTCAAACCTAAAGAACAA 58.448 30.769 0.00 0.00 0.00 2.83
48 49 8.203485 TGCTGAAATTCAAACCTAAAGAACAAT 58.797 29.630 0.00 0.00 0.00 2.71
49 50 9.691362 GCTGAAATTCAAACCTAAAGAACAATA 57.309 29.630 0.00 0.00 0.00 1.90
145 146 8.186709 TGACTATAAATAGTAGGGTAAGCACC 57.813 38.462 2.65 0.00 43.27 5.01
153 154 2.434331 GGTAAGCACCCCACTGCA 59.566 61.111 0.00 0.00 39.86 4.41
154 155 1.228429 GGTAAGCACCCCACTGCAA 60.228 57.895 0.00 0.00 39.86 4.08
155 156 0.611896 GGTAAGCACCCCACTGCAAT 60.612 55.000 0.00 0.00 39.86 3.56
156 157 1.256812 GTAAGCACCCCACTGCAATT 58.743 50.000 0.00 0.00 39.86 2.32
157 158 1.618343 GTAAGCACCCCACTGCAATTT 59.382 47.619 0.00 0.00 39.86 1.82
158 159 1.130777 AAGCACCCCACTGCAATTTT 58.869 45.000 0.00 0.00 39.86 1.82
159 160 1.130777 AGCACCCCACTGCAATTTTT 58.869 45.000 0.00 0.00 39.86 1.94
160 161 2.324541 AGCACCCCACTGCAATTTTTA 58.675 42.857 0.00 0.00 39.86 1.52
161 162 2.905736 AGCACCCCACTGCAATTTTTAT 59.094 40.909 0.00 0.00 39.86 1.40
162 163 4.093011 AGCACCCCACTGCAATTTTTATA 58.907 39.130 0.00 0.00 39.86 0.98
163 164 4.530161 AGCACCCCACTGCAATTTTTATAA 59.470 37.500 0.00 0.00 39.86 0.98
164 165 5.012561 AGCACCCCACTGCAATTTTTATAAA 59.987 36.000 0.00 0.00 39.86 1.40
165 166 5.879777 GCACCCCACTGCAATTTTTATAAAT 59.120 36.000 0.00 0.00 37.11 1.40
166 167 7.044798 GCACCCCACTGCAATTTTTATAAATA 58.955 34.615 0.00 0.00 37.11 1.40
167 168 7.224557 GCACCCCACTGCAATTTTTATAAATAG 59.775 37.037 0.00 0.00 37.11 1.73
168 169 7.224557 CACCCCACTGCAATTTTTATAAATAGC 59.775 37.037 0.00 2.36 32.85 2.97
169 170 7.093112 ACCCCACTGCAATTTTTATAAATAGCA 60.093 33.333 0.00 6.50 32.85 3.49
170 171 7.768120 CCCCACTGCAATTTTTATAAATAGCAA 59.232 33.333 0.00 0.00 32.85 3.91
171 172 9.160496 CCCACTGCAATTTTTATAAATAGCAAA 57.840 29.630 0.00 0.00 32.85 3.68
183 184 9.528489 TTTATAAATAGCAAAAAGGTCCAGAGT 57.472 29.630 0.00 0.00 0.00 3.24
186 187 6.819397 AATAGCAAAAAGGTCCAGAGTAAC 57.181 37.500 0.00 0.00 0.00 2.50
187 188 4.164843 AGCAAAAAGGTCCAGAGTAACA 57.835 40.909 0.00 0.00 0.00 2.41
188 189 4.137543 AGCAAAAAGGTCCAGAGTAACAG 58.862 43.478 0.00 0.00 0.00 3.16
189 190 4.134563 GCAAAAAGGTCCAGAGTAACAGA 58.865 43.478 0.00 0.00 0.00 3.41
190 191 4.762251 GCAAAAAGGTCCAGAGTAACAGAT 59.238 41.667 0.00 0.00 0.00 2.90
191 192 5.938125 GCAAAAAGGTCCAGAGTAACAGATA 59.062 40.000 0.00 0.00 0.00 1.98
192 193 6.128254 GCAAAAAGGTCCAGAGTAACAGATAC 60.128 42.308 0.00 0.00 34.52 2.24
193 194 6.681729 AAAAGGTCCAGAGTAACAGATACA 57.318 37.500 0.00 0.00 36.94 2.29
194 195 6.681729 AAAGGTCCAGAGTAACAGATACAA 57.318 37.500 0.00 0.00 36.94 2.41
195 196 6.875972 AAGGTCCAGAGTAACAGATACAAT 57.124 37.500 0.00 0.00 36.94 2.71
196 197 6.227298 AGGTCCAGAGTAACAGATACAATG 57.773 41.667 0.00 0.00 36.94 2.82
197 198 5.958380 AGGTCCAGAGTAACAGATACAATGA 59.042 40.000 0.00 0.00 36.94 2.57
198 199 6.043411 GGTCCAGAGTAACAGATACAATGAC 58.957 44.000 0.00 0.00 36.94 3.06
199 200 6.127310 GGTCCAGAGTAACAGATACAATGACT 60.127 42.308 0.00 0.00 36.94 3.41
200 201 6.975772 GTCCAGAGTAACAGATACAATGACTC 59.024 42.308 0.00 0.00 36.94 3.36
201 202 6.663523 TCCAGAGTAACAGATACAATGACTCA 59.336 38.462 0.00 0.00 36.94 3.41
202 203 6.977502 CCAGAGTAACAGATACAATGACTCAG 59.022 42.308 0.00 0.00 36.94 3.35
203 204 6.475076 CAGAGTAACAGATACAATGACTCAGC 59.525 42.308 0.00 0.00 36.94 4.26
204 205 6.379703 AGAGTAACAGATACAATGACTCAGCT 59.620 38.462 0.00 0.00 36.94 4.24
205 206 7.558081 AGAGTAACAGATACAATGACTCAGCTA 59.442 37.037 0.00 0.00 36.94 3.32
206 207 7.711846 AGTAACAGATACAATGACTCAGCTAG 58.288 38.462 0.00 0.00 36.94 3.42
207 208 6.537453 AACAGATACAATGACTCAGCTAGT 57.463 37.500 0.00 0.00 42.80 2.57
208 209 5.900425 ACAGATACAATGACTCAGCTAGTG 58.100 41.667 0.00 0.00 39.07 2.74
209 210 5.654209 ACAGATACAATGACTCAGCTAGTGA 59.346 40.000 0.00 0.00 39.07 3.41
221 222 5.755409 TCAGCTAGTGAGGTTAAAATGGA 57.245 39.130 0.00 0.00 0.00 3.41
222 223 6.121776 TCAGCTAGTGAGGTTAAAATGGAA 57.878 37.500 0.00 0.00 0.00 3.53
223 224 6.539173 TCAGCTAGTGAGGTTAAAATGGAAA 58.461 36.000 0.00 0.00 0.00 3.13
224 225 6.430000 TCAGCTAGTGAGGTTAAAATGGAAAC 59.570 38.462 0.00 0.00 0.00 2.78
240 241 4.499183 TGGAAACATTTTGCAAACGAAGT 58.501 34.783 12.39 5.32 37.93 3.01
241 242 4.564769 TGGAAACATTTTGCAAACGAAGTC 59.435 37.500 12.39 7.05 34.75 3.01
242 243 4.564769 GGAAACATTTTGCAAACGAAGTCA 59.435 37.500 12.39 0.00 45.00 3.41
243 244 5.234116 GGAAACATTTTGCAAACGAAGTCAT 59.766 36.000 12.39 0.00 45.00 3.06
244 245 5.640218 AACATTTTGCAAACGAAGTCATG 57.360 34.783 12.39 13.13 45.00 3.07
245 246 3.490526 ACATTTTGCAAACGAAGTCATGC 59.509 39.130 12.39 0.00 45.00 4.06
250 251 3.485947 GCAAACGAAGTCATGCCATAA 57.514 42.857 0.00 0.00 45.00 1.90
251 252 4.032703 GCAAACGAAGTCATGCCATAAT 57.967 40.909 0.00 0.00 45.00 1.28
252 253 4.037690 GCAAACGAAGTCATGCCATAATC 58.962 43.478 0.00 0.00 45.00 1.75
253 254 4.201950 GCAAACGAAGTCATGCCATAATCT 60.202 41.667 0.00 0.00 45.00 2.40
254 255 5.505286 CAAACGAAGTCATGCCATAATCTC 58.495 41.667 0.00 0.00 45.00 2.75
255 256 3.384668 ACGAAGTCATGCCATAATCTCG 58.615 45.455 0.00 0.00 29.74 4.04
256 257 2.156504 CGAAGTCATGCCATAATCTCGC 59.843 50.000 0.00 0.00 0.00 5.03
257 258 2.175878 AGTCATGCCATAATCTCGCC 57.824 50.000 0.00 0.00 0.00 5.54
258 259 0.792640 GTCATGCCATAATCTCGCCG 59.207 55.000 0.00 0.00 0.00 6.46
259 260 0.392706 TCATGCCATAATCTCGCCGT 59.607 50.000 0.00 0.00 0.00 5.68
260 261 1.202639 TCATGCCATAATCTCGCCGTT 60.203 47.619 0.00 0.00 0.00 4.44
261 262 1.603802 CATGCCATAATCTCGCCGTTT 59.396 47.619 0.00 0.00 0.00 3.60
262 263 1.745232 TGCCATAATCTCGCCGTTTT 58.255 45.000 0.00 0.00 0.00 2.43
263 264 2.907634 TGCCATAATCTCGCCGTTTTA 58.092 42.857 0.00 0.00 0.00 1.52
264 265 3.472652 TGCCATAATCTCGCCGTTTTAT 58.527 40.909 0.00 0.00 0.00 1.40
265 266 3.880490 TGCCATAATCTCGCCGTTTTATT 59.120 39.130 0.00 0.00 0.00 1.40
266 267 4.336993 TGCCATAATCTCGCCGTTTTATTT 59.663 37.500 0.00 0.00 0.00 1.40
267 268 5.527951 TGCCATAATCTCGCCGTTTTATTTA 59.472 36.000 0.00 0.00 0.00 1.40
268 269 5.849604 GCCATAATCTCGCCGTTTTATTTAC 59.150 40.000 0.00 0.00 0.00 2.01
269 270 6.512091 GCCATAATCTCGCCGTTTTATTTACA 60.512 38.462 0.00 0.00 0.00 2.41
270 271 7.411274 CCATAATCTCGCCGTTTTATTTACAA 58.589 34.615 0.00 0.00 0.00 2.41
271 272 7.911205 CCATAATCTCGCCGTTTTATTTACAAA 59.089 33.333 0.00 0.00 0.00 2.83
272 273 9.445786 CATAATCTCGCCGTTTTATTTACAAAT 57.554 29.630 0.00 0.00 0.00 2.32
274 275 7.964545 ATCTCGCCGTTTTATTTACAAATTC 57.035 32.000 0.00 0.00 0.00 2.17
275 276 6.900189 TCTCGCCGTTTTATTTACAAATTCA 58.100 32.000 0.00 0.00 0.00 2.57
276 277 7.531716 TCTCGCCGTTTTATTTACAAATTCAT 58.468 30.769 0.00 0.00 0.00 2.57
277 278 8.024285 TCTCGCCGTTTTATTTACAAATTCATT 58.976 29.630 0.00 0.00 0.00 2.57
278 279 9.279904 CTCGCCGTTTTATTTACAAATTCATTA 57.720 29.630 0.00 0.00 0.00 1.90
279 280 9.790389 TCGCCGTTTTATTTACAAATTCATTAT 57.210 25.926 0.00 0.00 0.00 1.28
313 314 8.807948 TTATTCTAGAAATTTGTTCAGAGGGG 57.192 34.615 9.71 0.00 0.00 4.79
314 315 5.179452 TCTAGAAATTTGTTCAGAGGGGG 57.821 43.478 0.00 0.00 0.00 5.40
315 316 3.903530 AGAAATTTGTTCAGAGGGGGT 57.096 42.857 0.00 0.00 0.00 4.95
316 317 5.788533 TCTAGAAATTTGTTCAGAGGGGGTA 59.211 40.000 0.00 0.00 0.00 3.69
317 318 5.333566 AGAAATTTGTTCAGAGGGGGTAA 57.666 39.130 0.00 0.00 0.00 2.85
318 319 5.711698 AGAAATTTGTTCAGAGGGGGTAAA 58.288 37.500 0.00 0.00 0.00 2.01
319 320 6.322931 AGAAATTTGTTCAGAGGGGGTAAAT 58.677 36.000 0.00 0.00 0.00 1.40
320 321 6.787458 AGAAATTTGTTCAGAGGGGGTAAATT 59.213 34.615 0.00 0.00 0.00 1.82
321 322 7.953493 AGAAATTTGTTCAGAGGGGGTAAATTA 59.047 33.333 0.00 0.00 0.00 1.40
322 323 8.679344 AAATTTGTTCAGAGGGGGTAAATTAT 57.321 30.769 0.00 0.00 0.00 1.28
323 324 7.898014 ATTTGTTCAGAGGGGGTAAATTATC 57.102 36.000 0.00 0.00 0.00 1.75
324 325 5.031066 TGTTCAGAGGGGGTAAATTATCG 57.969 43.478 0.00 0.00 0.00 2.92
325 326 4.717778 TGTTCAGAGGGGGTAAATTATCGA 59.282 41.667 0.00 0.00 0.00 3.59
326 327 5.190132 TGTTCAGAGGGGGTAAATTATCGAA 59.810 40.000 0.00 0.00 0.00 3.71
327 328 6.126594 TGTTCAGAGGGGGTAAATTATCGAAT 60.127 38.462 0.00 0.00 0.00 3.34
328 329 6.509523 TCAGAGGGGGTAAATTATCGAATT 57.490 37.500 0.00 0.00 36.82 2.17
329 330 7.621006 TCAGAGGGGGTAAATTATCGAATTA 57.379 36.000 0.00 0.00 34.01 1.40
330 331 8.214721 TCAGAGGGGGTAAATTATCGAATTAT 57.785 34.615 0.00 0.00 34.01 1.28
331 332 9.328975 TCAGAGGGGGTAAATTATCGAATTATA 57.671 33.333 0.00 0.00 34.01 0.98
332 333 9.953565 CAGAGGGGGTAAATTATCGAATTATAA 57.046 33.333 0.00 0.00 34.01 0.98
376 377 5.005682 TCGAATTGTAACATCTTCATGAGCG 59.994 40.000 0.00 0.00 33.72 5.03
377 378 5.490139 AATTGTAACATCTTCATGAGCGG 57.510 39.130 0.00 0.00 33.72 5.52
386 387 2.700371 TCTTCATGAGCGGACACCATAT 59.300 45.455 0.00 0.00 0.00 1.78
387 388 3.134623 TCTTCATGAGCGGACACCATATT 59.865 43.478 0.00 0.00 0.00 1.28
388 389 3.111853 TCATGAGCGGACACCATATTC 57.888 47.619 0.00 0.00 0.00 1.75
389 390 2.146342 CATGAGCGGACACCATATTCC 58.854 52.381 0.00 0.00 0.00 3.01
413 415 7.619302 TCCTTCTTAATATTGCACCATTTTCCT 59.381 33.333 0.00 0.00 0.00 3.36
425 427 8.825667 TGCACCATTTTCCTTTATAAAGTTTC 57.174 30.769 20.99 2.66 34.20 2.78
428 430 9.981114 CACCATTTTCCTTTATAAAGTTTCACT 57.019 29.630 20.99 2.11 34.20 3.41
444 446 6.255884 GTTTCACTCAAACGGTTTCAAATC 57.744 37.500 2.51 0.00 35.26 2.17
449 451 7.136119 TCACTCAAACGGTTTCAAATCAATAC 58.864 34.615 2.51 0.00 0.00 1.89
455 457 8.547069 CAAACGGTTTCAAATCAATACAAACAT 58.453 29.630 2.51 0.00 0.00 2.71
466 468 3.763097 ATACAAACATCCACACATGCG 57.237 42.857 0.00 0.00 0.00 4.73
471 473 2.760634 ACATCCACACATGCGACTTA 57.239 45.000 0.00 0.00 0.00 2.24
476 478 5.048083 ACATCCACACATGCGACTTAATTTT 60.048 36.000 0.00 0.00 0.00 1.82
479 481 5.935206 TCCACACATGCGACTTAATTTTCTA 59.065 36.000 0.00 0.00 0.00 2.10
481 483 5.728049 CACACATGCGACTTAATTTTCTACG 59.272 40.000 0.00 0.00 0.00 3.51
482 484 5.407387 ACACATGCGACTTAATTTTCTACGT 59.593 36.000 0.00 0.00 0.00 3.57
483 485 6.587226 ACACATGCGACTTAATTTTCTACGTA 59.413 34.615 0.00 0.00 0.00 3.57
484 486 6.892951 CACATGCGACTTAATTTTCTACGTAC 59.107 38.462 0.00 0.00 0.00 3.67
485 487 6.810182 ACATGCGACTTAATTTTCTACGTACT 59.190 34.615 0.00 0.00 0.00 2.73
486 488 7.330208 ACATGCGACTTAATTTTCTACGTACTT 59.670 33.333 0.00 0.00 0.00 2.24
487 489 8.800972 CATGCGACTTAATTTTCTACGTACTTA 58.199 33.333 0.00 0.00 0.00 2.24
488 490 8.741101 TGCGACTTAATTTTCTACGTACTTAA 57.259 30.769 0.00 0.00 0.00 1.85
523 531 6.350027 CCAATGTGTTTCTAATGGCATGTACA 60.350 38.462 0.00 0.00 0.00 2.90
526 534 7.929941 TGTGTTTCTAATGGCATGTACATTA 57.070 32.000 5.37 17.94 39.18 1.90
537 545 2.631160 TGTACATTAATGAGGCCGGG 57.369 50.000 22.16 0.00 0.00 5.73
539 547 0.840617 TACATTAATGAGGCCGGGCA 59.159 50.000 31.59 11.24 0.00 5.36
540 548 0.185901 ACATTAATGAGGCCGGGCAT 59.814 50.000 31.59 15.24 0.00 4.40
541 549 1.331214 CATTAATGAGGCCGGGCATT 58.669 50.000 31.59 22.99 38.24 3.56
542 550 2.158534 ACATTAATGAGGCCGGGCATTA 60.159 45.455 31.59 21.92 36.27 1.90
543 551 1.975660 TTAATGAGGCCGGGCATTAC 58.024 50.000 31.59 17.79 36.88 1.89
544 552 0.840617 TAATGAGGCCGGGCATTACA 59.159 50.000 31.59 22.55 36.27 2.41
568 576 4.039124 AGGTTGACGCCATTTCATTTTCTT 59.961 37.500 0.00 0.00 0.00 2.52
581 589 4.735369 TCATTTTCTTCCTTAAGTGGCCA 58.265 39.130 0.00 0.00 34.13 5.36
778 794 1.487142 TCTTTCCGTGTTCTTCCCACA 59.513 47.619 0.00 0.00 33.00 4.17
779 795 1.602377 CTTTCCGTGTTCTTCCCACAC 59.398 52.381 0.00 0.00 41.08 3.82
869 889 1.532794 CTAGCCCCCTGATCGAGCT 60.533 63.158 0.90 0.00 37.58 4.09
874 894 0.251386 CCCCCTGATCGAGCTAGCTA 60.251 60.000 19.38 2.78 0.00 3.32
875 895 1.173043 CCCCTGATCGAGCTAGCTAG 58.827 60.000 19.38 18.55 0.00 3.42
904 924 0.387622 CCCATGCGTGCAACTTCTTG 60.388 55.000 0.00 0.00 31.75 3.02
909 929 1.370900 CGTGCAACTTCTTGGCAGC 60.371 57.895 0.00 0.00 38.38 5.25
910 930 1.006922 GTGCAACTTCTTGGCAGCC 60.007 57.895 3.66 3.66 38.38 4.85
911 931 2.202395 TGCAACTTCTTGGCAGCCC 61.202 57.895 9.64 0.00 32.95 5.19
912 932 2.202395 GCAACTTCTTGGCAGCCCA 61.202 57.895 9.64 0.00 40.06 5.36
913 933 1.538687 GCAACTTCTTGGCAGCCCAT 61.539 55.000 9.64 0.00 41.78 4.00
914 934 0.529378 CAACTTCTTGGCAGCCCATC 59.471 55.000 9.64 0.00 41.78 3.51
915 935 0.407139 AACTTCTTGGCAGCCCATCT 59.593 50.000 9.64 0.00 41.78 2.90
916 936 0.034670 ACTTCTTGGCAGCCCATCTC 60.035 55.000 9.64 0.00 41.78 2.75
917 937 0.750911 CTTCTTGGCAGCCCATCTCC 60.751 60.000 9.64 0.00 41.78 3.71
918 938 2.123982 CTTGGCAGCCCATCTCCC 60.124 66.667 9.64 0.00 41.78 4.30
919 939 2.614969 TTGGCAGCCCATCTCCCT 60.615 61.111 9.64 0.00 41.78 4.20
920 940 2.621517 CTTGGCAGCCCATCTCCCTC 62.622 65.000 9.64 0.00 41.78 4.30
1022 1042 2.079925 GCAGGAAGTAGCTGGTTTCTG 58.920 52.381 12.01 12.01 0.00 3.02
1079 1099 1.957186 TTCTACACCGCGGCAACAC 60.957 57.895 28.58 0.00 0.00 3.32
1129 1165 1.888736 GTACCTGACGGTGACCTCC 59.111 63.158 0.00 0.00 45.18 4.30
1130 1166 1.304713 TACCTGACGGTGACCTCCC 60.305 63.158 0.00 0.00 45.18 4.30
1131 1167 1.797018 TACCTGACGGTGACCTCCCT 61.797 60.000 0.00 0.00 45.18 4.20
1132 1168 2.352032 CCTGACGGTGACCTCCCTC 61.352 68.421 0.00 0.00 0.00 4.30
1133 1169 2.283676 TGACGGTGACCTCCCTCC 60.284 66.667 0.00 0.00 0.00 4.30
1134 1170 3.450115 GACGGTGACCTCCCTCCG 61.450 72.222 0.00 0.00 46.98 4.63
1135 1171 3.933048 GACGGTGACCTCCCTCCGA 62.933 68.421 9.37 0.00 44.86 4.55
1499 1550 3.853475 GCTTCCTAGCAAAAGGTACGTA 58.147 45.455 0.00 0.00 46.95 3.57
1500 1551 3.615937 GCTTCCTAGCAAAAGGTACGTAC 59.384 47.826 17.56 17.56 46.95 3.67
1543 1596 2.766263 TCTGCCTCCACTTGATTATCGT 59.234 45.455 0.00 0.00 0.00 3.73
1547 1600 3.535561 CCTCCACTTGATTATCGTTGCT 58.464 45.455 0.00 0.00 0.00 3.91
1548 1601 3.310774 CCTCCACTTGATTATCGTTGCTG 59.689 47.826 0.00 0.00 0.00 4.41
1559 1612 0.730265 TCGTTGCTGTTTTCGTGCTT 59.270 45.000 0.00 0.00 0.00 3.91
1566 1619 3.181492 TGCTGTTTTCGTGCTTGATTTCA 60.181 39.130 0.00 0.00 0.00 2.69
1570 1623 6.143758 GCTGTTTTCGTGCTTGATTTCATTTA 59.856 34.615 0.00 0.00 0.00 1.40
1571 1624 7.388290 TGTTTTCGTGCTTGATTTCATTTAC 57.612 32.000 0.00 0.00 0.00 2.01
1698 1766 5.220284 GCAAAACGAGGTACGATTACTAACC 60.220 44.000 0.00 0.00 45.77 2.85
1721 1789 2.320056 ACCATACCCTAACCCTACCAGT 59.680 50.000 0.00 0.00 0.00 4.00
1722 1790 3.246609 ACCATACCCTAACCCTACCAGTT 60.247 47.826 0.00 0.00 0.00 3.16
1723 1791 3.784202 CCATACCCTAACCCTACCAGTTT 59.216 47.826 0.00 0.00 0.00 2.66
1724 1792 4.228895 CCATACCCTAACCCTACCAGTTTT 59.771 45.833 0.00 0.00 0.00 2.43
1725 1793 3.801307 ACCCTAACCCTACCAGTTTTG 57.199 47.619 0.00 0.00 0.00 2.44
1726 1794 3.329277 ACCCTAACCCTACCAGTTTTGA 58.671 45.455 0.00 0.00 0.00 2.69
1727 1795 3.723154 ACCCTAACCCTACCAGTTTTGAA 59.277 43.478 0.00 0.00 0.00 2.69
1848 1917 1.270625 CCACGGCAAAGACTACCAAGA 60.271 52.381 0.00 0.00 0.00 3.02
1876 1945 4.157607 ACAAAGCTTGTCCCCGTG 57.842 55.556 0.00 0.00 40.56 4.94
2044 2115 7.445402 TGTCTTCTAGCTAGAGTTTTTGCATTT 59.555 33.333 22.19 0.00 33.21 2.32
2075 2146 0.891373 AGTGACTCCATCGTGACCAG 59.109 55.000 0.00 0.00 0.00 4.00
2114 2185 7.716560 TCTGAATATTCAACCAGGTATGATGTG 59.283 37.037 18.47 2.37 36.64 3.21
2267 2338 6.586751 CGTGAAAGCGATGTTTACTTAGAAA 58.413 36.000 0.00 0.00 0.00 2.52
2453 2533 2.034879 CAAGAACGCCGTGCTGGAT 61.035 57.895 0.00 0.00 42.00 3.41
2462 2542 1.373497 CGTGCTGGATATCGAGGCC 60.373 63.158 15.58 0.00 0.00 5.19
2483 2563 0.835941 AGATCAAGCTGGCCTTCGAT 59.164 50.000 3.32 0.00 0.00 3.59
2544 2624 3.729524 TCAGGAGATGAAGGATCTAGGGA 59.270 47.826 0.00 0.00 41.91 4.20
2555 2635 6.216662 TGAAGGATCTAGGGATAGAGAGGTAG 59.783 46.154 0.00 0.00 31.46 3.18
2562 2642 2.569404 GGGATAGAGAGGTAGGCAATGG 59.431 54.545 0.00 0.00 0.00 3.16
2585 2668 2.450476 ACATTTCTTGCCATGACCTCC 58.550 47.619 0.00 0.00 0.00 4.30
2586 2669 2.042162 ACATTTCTTGCCATGACCTCCT 59.958 45.455 0.00 0.00 0.00 3.69
2608 2691 1.185618 TGGTCTCGGTCTGAAGGTGG 61.186 60.000 0.00 0.00 0.00 4.61
2617 2700 3.610911 GGTCTGAAGGTGGAACATTAGG 58.389 50.000 0.00 0.00 43.10 2.69
2631 2714 6.211184 TGGAACATTAGGTTGATTTGCTGAAT 59.789 34.615 0.00 0.00 40.63 2.57
2678 2761 2.747460 CATGGGTGGCAGGACACG 60.747 66.667 0.00 0.00 42.23 4.49
3008 3092 6.035005 CGTGGTAATCAGTTACACATTCTCTG 59.965 42.308 0.00 0.00 41.59 3.35
3015 3099 6.233434 TCAGTTACACATTCTCTGAGCAAAT 58.767 36.000 0.00 0.00 32.49 2.32
3017 3101 3.844577 ACACATTCTCTGAGCAAATGC 57.155 42.857 15.25 0.00 42.49 3.56
3019 3103 3.057736 ACACATTCTCTGAGCAAATGCAC 60.058 43.478 15.25 1.72 45.16 4.57
3067 3156 3.003480 AGACGCTAATGGCTTTCTTGTC 58.997 45.455 0.00 0.00 39.13 3.18
3073 3162 2.254546 ATGGCTTTCTTGTCGTGTCA 57.745 45.000 0.00 0.00 0.00 3.58
3256 3345 2.760385 AGGAGCCCCTACAGCGAC 60.760 66.667 0.00 0.00 42.15 5.19
3506 3599 4.181010 CTCTCCCACCCATGGCCG 62.181 72.222 6.09 0.00 45.76 6.13
3593 3687 1.000052 TGAACGACGTATGCAGGTTCA 60.000 47.619 0.00 10.34 43.16 3.18
3811 3911 2.668550 GTGTGAACCCACCGCCTC 60.669 66.667 0.00 0.00 42.53 4.70
3823 3923 2.317609 CCGCCTCAACACCGAACAG 61.318 63.158 0.00 0.00 0.00 3.16
3905 4005 4.277476 TCCACTGAAGAAACACATTTGGT 58.723 39.130 0.00 0.00 0.00 3.67
4006 4112 6.993079 ACAACAGAAAATATTTGTTCTCCCC 58.007 36.000 0.39 0.00 33.06 4.81
4007 4113 6.782494 ACAACAGAAAATATTTGTTCTCCCCT 59.218 34.615 0.39 0.00 33.06 4.79
4009 4115 6.794534 ACAGAAAATATTTGTTCTCCCCTCT 58.205 36.000 0.39 0.00 31.66 3.69
4010 4116 7.928873 ACAGAAAATATTTGTTCTCCCCTCTA 58.071 34.615 0.39 0.00 31.66 2.43
4011 4117 7.829706 ACAGAAAATATTTGTTCTCCCCTCTAC 59.170 37.037 0.39 0.00 31.66 2.59
4012 4118 7.829211 CAGAAAATATTTGTTCTCCCCTCTACA 59.171 37.037 0.39 0.00 31.66 2.74
4013 4119 8.560903 AGAAAATATTTGTTCTCCCCTCTACAT 58.439 33.333 0.39 0.00 27.52 2.29
4014 4120 8.525290 AAAATATTTGTTCTCCCCTCTACATG 57.475 34.615 0.39 0.00 0.00 3.21
4015 4121 6.831664 ATATTTGTTCTCCCCTCTACATGT 57.168 37.500 2.69 2.69 0.00 3.21
4016 4122 4.993705 TTTGTTCTCCCCTCTACATGTT 57.006 40.909 2.30 0.00 0.00 2.71
4017 4123 3.981071 TGTTCTCCCCTCTACATGTTG 57.019 47.619 2.30 1.19 0.00 3.33
4018 4124 3.248024 TGTTCTCCCCTCTACATGTTGT 58.752 45.455 2.30 0.00 0.00 3.32
4022 4128 5.871396 TCTCCCCTCTACATGTTGTATTC 57.129 43.478 2.30 0.00 31.66 1.75
4023 4129 5.277250 TCTCCCCTCTACATGTTGTATTCA 58.723 41.667 2.30 0.00 31.66 2.57
4028 4134 9.387397 TCCCCTCTACATGTTGTATTCATTATA 57.613 33.333 2.30 0.00 31.66 0.98
4062 4168 7.784633 TGGAAAAACAAATAAAGCTTTGGAG 57.215 32.000 22.02 10.91 39.83 3.86
4181 4287 4.548451 TTGCCAATGTAAAATGCCATGA 57.452 36.364 0.00 0.00 0.00 3.07
4182 4288 4.757019 TGCCAATGTAAAATGCCATGAT 57.243 36.364 0.00 0.00 0.00 2.45
4202 4308 7.223971 CCATGATTCTATGAAATTGCCAAAGTG 59.776 37.037 0.00 0.00 0.00 3.16
4204 4310 7.092079 TGATTCTATGAAATTGCCAAAGTGTG 58.908 34.615 0.00 0.00 0.00 3.82
4230 4349 1.065410 TGGCCCTTTCTTCACCTGGA 61.065 55.000 0.00 0.00 0.00 3.86
4511 4632 2.202395 GGGCTGGCTCAAACTGCAA 61.202 57.895 0.00 0.00 34.89 4.08
4517 4638 3.552684 GCTGGCTCAAACTGCAACAATAA 60.553 43.478 0.00 0.00 33.62 1.40
4551 4894 4.926860 CTTGATAAGCATCACGTGACAA 57.073 40.909 22.71 16.70 40.94 3.18
4552 4895 5.281693 CTTGATAAGCATCACGTGACAAA 57.718 39.130 22.71 5.37 40.94 2.83
4671 5025 8.879759 GTTTCAGTAGCTTTACAGTGCATATAA 58.120 33.333 0.00 0.00 0.00 0.98
4687 5041 7.501559 AGTGCATATAAGACTGATCTGCATTTT 59.498 33.333 14.27 3.59 38.28 1.82
4747 5101 4.488879 GGCCAAATAGCAAAGAGAAAGTG 58.511 43.478 0.00 0.00 0.00 3.16
4756 5110 4.518211 AGCAAAGAGAAAGTGTCATGGAAG 59.482 41.667 0.00 0.00 0.00 3.46
4770 5124 5.411361 TGTCATGGAAGTACAGCATTAACAC 59.589 40.000 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.548622 AGCAATACAAGCAACATTATCTCCAT 59.451 34.615 0.00 0.00 0.00 3.41
1 2 5.887598 AGCAATACAAGCAACATTATCTCCA 59.112 36.000 0.00 0.00 0.00 3.86
2 3 6.038603 TCAGCAATACAAGCAACATTATCTCC 59.961 38.462 0.00 0.00 0.00 3.71
3 4 7.019774 TCAGCAATACAAGCAACATTATCTC 57.980 36.000 0.00 0.00 0.00 2.75
4 5 7.395190 TTCAGCAATACAAGCAACATTATCT 57.605 32.000 0.00 0.00 0.00 1.98
5 6 8.638685 ATTTCAGCAATACAAGCAACATTATC 57.361 30.769 0.00 0.00 0.00 1.75
6 7 9.090692 GAATTTCAGCAATACAAGCAACATTAT 57.909 29.630 0.00 0.00 0.00 1.28
7 8 8.087136 TGAATTTCAGCAATACAAGCAACATTA 58.913 29.630 0.00 0.00 0.00 1.90
8 9 6.930164 TGAATTTCAGCAATACAAGCAACATT 59.070 30.769 0.00 0.00 0.00 2.71
9 10 6.457355 TGAATTTCAGCAATACAAGCAACAT 58.543 32.000 0.00 0.00 0.00 2.71
10 11 5.840715 TGAATTTCAGCAATACAAGCAACA 58.159 33.333 0.00 0.00 0.00 3.33
11 12 6.768029 TTGAATTTCAGCAATACAAGCAAC 57.232 33.333 0.00 0.00 0.00 4.17
12 13 6.202570 GGTTTGAATTTCAGCAATACAAGCAA 59.797 34.615 0.00 0.00 0.00 3.91
13 14 5.695816 GGTTTGAATTTCAGCAATACAAGCA 59.304 36.000 0.00 0.00 0.00 3.91
14 15 5.928264 AGGTTTGAATTTCAGCAATACAAGC 59.072 36.000 0.00 0.00 0.00 4.01
15 16 9.474920 TTTAGGTTTGAATTTCAGCAATACAAG 57.525 29.630 0.00 0.00 0.00 3.16
16 17 9.474920 CTTTAGGTTTGAATTTCAGCAATACAA 57.525 29.630 0.00 0.00 0.00 2.41
17 18 8.855110 TCTTTAGGTTTGAATTTCAGCAATACA 58.145 29.630 0.00 0.00 0.00 2.29
18 19 9.691362 TTCTTTAGGTTTGAATTTCAGCAATAC 57.309 29.630 0.00 0.00 0.00 1.89
19 20 9.691362 GTTCTTTAGGTTTGAATTTCAGCAATA 57.309 29.630 0.00 0.00 0.00 1.90
20 21 8.203485 TGTTCTTTAGGTTTGAATTTCAGCAAT 58.797 29.630 0.00 0.00 0.00 3.56
21 22 7.551585 TGTTCTTTAGGTTTGAATTTCAGCAA 58.448 30.769 0.00 0.00 0.00 3.91
22 23 7.106439 TGTTCTTTAGGTTTGAATTTCAGCA 57.894 32.000 0.00 0.00 0.00 4.41
23 24 8.593492 ATTGTTCTTTAGGTTTGAATTTCAGC 57.407 30.769 0.00 0.00 0.00 4.26
119 120 8.645110 GGTGCTTACCCTACTATTTATAGTCAA 58.355 37.037 5.71 0.00 42.31 3.18
120 121 7.234166 GGGTGCTTACCCTACTATTTATAGTCA 59.766 40.741 8.24 0.00 46.39 3.41
121 122 7.609960 GGGTGCTTACCCTACTATTTATAGTC 58.390 42.308 8.24 0.00 46.39 2.59
122 123 7.550597 GGGTGCTTACCCTACTATTTATAGT 57.449 40.000 8.24 7.50 46.39 2.12
136 137 0.611896 ATTGCAGTGGGGTGCTTACC 60.612 55.000 0.00 0.00 44.32 2.85
137 138 1.256812 AATTGCAGTGGGGTGCTTAC 58.743 50.000 0.00 0.00 44.32 2.34
138 139 2.008242 AAATTGCAGTGGGGTGCTTA 57.992 45.000 0.00 0.00 44.32 3.09
139 140 1.130777 AAAATTGCAGTGGGGTGCTT 58.869 45.000 0.00 0.00 44.32 3.91
140 141 1.130777 AAAAATTGCAGTGGGGTGCT 58.869 45.000 0.00 0.00 44.32 4.40
141 142 2.829741 TAAAAATTGCAGTGGGGTGC 57.170 45.000 0.00 0.00 44.27 5.01
142 143 7.224557 GCTATTTATAAAAATTGCAGTGGGGTG 59.775 37.037 1.21 0.00 46.50 4.61
143 144 7.272244 GCTATTTATAAAAATTGCAGTGGGGT 58.728 34.615 1.21 0.00 46.50 4.95
144 145 7.713764 GCTATTTATAAAAATTGCAGTGGGG 57.286 36.000 1.21 0.00 46.50 4.96
157 158 9.528489 ACTCTGGACCTTTTTGCTATTTATAAA 57.472 29.630 0.00 0.00 0.00 1.40
160 161 8.957466 GTTACTCTGGACCTTTTTGCTATTTAT 58.043 33.333 0.00 0.00 0.00 1.40
161 162 7.940137 TGTTACTCTGGACCTTTTTGCTATTTA 59.060 33.333 0.00 0.00 0.00 1.40
162 163 6.775629 TGTTACTCTGGACCTTTTTGCTATTT 59.224 34.615 0.00 0.00 0.00 1.40
163 164 6.303839 TGTTACTCTGGACCTTTTTGCTATT 58.696 36.000 0.00 0.00 0.00 1.73
164 165 5.876357 TGTTACTCTGGACCTTTTTGCTAT 58.124 37.500 0.00 0.00 0.00 2.97
165 166 5.071250 TCTGTTACTCTGGACCTTTTTGCTA 59.929 40.000 0.00 0.00 0.00 3.49
166 167 4.137543 CTGTTACTCTGGACCTTTTTGCT 58.862 43.478 0.00 0.00 0.00 3.91
167 168 4.134563 TCTGTTACTCTGGACCTTTTTGC 58.865 43.478 0.00 0.00 0.00 3.68
168 169 6.934645 TGTATCTGTTACTCTGGACCTTTTTG 59.065 38.462 0.00 0.00 0.00 2.44
169 170 7.074653 TGTATCTGTTACTCTGGACCTTTTT 57.925 36.000 0.00 0.00 0.00 1.94
170 171 6.681729 TGTATCTGTTACTCTGGACCTTTT 57.318 37.500 0.00 0.00 0.00 2.27
171 172 6.681729 TTGTATCTGTTACTCTGGACCTTT 57.318 37.500 0.00 0.00 0.00 3.11
172 173 6.440647 TCATTGTATCTGTTACTCTGGACCTT 59.559 38.462 0.00 0.00 0.00 3.50
173 174 5.958380 TCATTGTATCTGTTACTCTGGACCT 59.042 40.000 0.00 0.00 0.00 3.85
174 175 6.043411 GTCATTGTATCTGTTACTCTGGACC 58.957 44.000 0.00 0.00 0.00 4.46
175 176 6.868622 AGTCATTGTATCTGTTACTCTGGAC 58.131 40.000 0.00 0.00 0.00 4.02
176 177 6.663523 TGAGTCATTGTATCTGTTACTCTGGA 59.336 38.462 0.00 0.00 34.41 3.86
177 178 6.867550 TGAGTCATTGTATCTGTTACTCTGG 58.132 40.000 0.00 0.00 34.41 3.86
178 179 6.475076 GCTGAGTCATTGTATCTGTTACTCTG 59.525 42.308 0.00 0.00 35.68 3.35
179 180 6.379703 AGCTGAGTCATTGTATCTGTTACTCT 59.620 38.462 0.00 0.00 34.41 3.24
180 181 6.568869 AGCTGAGTCATTGTATCTGTTACTC 58.431 40.000 0.00 0.00 34.00 2.59
181 182 6.537453 AGCTGAGTCATTGTATCTGTTACT 57.463 37.500 0.00 0.00 0.00 2.24
182 183 7.433719 CACTAGCTGAGTCATTGTATCTGTTAC 59.566 40.741 0.00 0.00 35.64 2.50
183 184 7.339466 TCACTAGCTGAGTCATTGTATCTGTTA 59.661 37.037 0.00 0.00 35.64 2.41
184 185 6.153510 TCACTAGCTGAGTCATTGTATCTGTT 59.846 38.462 0.00 0.00 35.64 3.16
185 186 5.654209 TCACTAGCTGAGTCATTGTATCTGT 59.346 40.000 0.00 0.00 35.64 3.41
186 187 6.141560 TCACTAGCTGAGTCATTGTATCTG 57.858 41.667 0.00 0.00 35.64 2.90
187 188 5.301551 CCTCACTAGCTGAGTCATTGTATCT 59.698 44.000 16.26 0.00 44.69 1.98
188 189 5.068460 ACCTCACTAGCTGAGTCATTGTATC 59.932 44.000 16.26 0.00 44.69 2.24
189 190 4.959210 ACCTCACTAGCTGAGTCATTGTAT 59.041 41.667 16.26 0.00 44.69 2.29
190 191 4.344978 ACCTCACTAGCTGAGTCATTGTA 58.655 43.478 16.26 0.00 44.69 2.41
191 192 3.169099 ACCTCACTAGCTGAGTCATTGT 58.831 45.455 16.26 7.80 44.69 2.71
192 193 3.883830 ACCTCACTAGCTGAGTCATTG 57.116 47.619 16.26 7.36 44.69 2.82
193 194 6.360370 TTTAACCTCACTAGCTGAGTCATT 57.640 37.500 16.26 11.69 44.69 2.57
194 195 6.360370 TTTTAACCTCACTAGCTGAGTCAT 57.640 37.500 16.26 8.26 44.69 3.06
195 196 5.801531 TTTTAACCTCACTAGCTGAGTCA 57.198 39.130 16.26 0.00 44.69 3.41
196 197 5.582665 CCATTTTAACCTCACTAGCTGAGTC 59.417 44.000 16.26 0.00 44.69 3.36
197 198 5.248477 TCCATTTTAACCTCACTAGCTGAGT 59.752 40.000 16.26 0.00 44.69 3.41
198 199 5.734720 TCCATTTTAACCTCACTAGCTGAG 58.265 41.667 12.68 12.68 45.63 3.35
199 200 5.755409 TCCATTTTAACCTCACTAGCTGA 57.245 39.130 0.00 0.00 0.00 4.26
200 201 6.206634 TGTTTCCATTTTAACCTCACTAGCTG 59.793 38.462 0.00 0.00 0.00 4.24
201 202 6.303839 TGTTTCCATTTTAACCTCACTAGCT 58.696 36.000 0.00 0.00 0.00 3.32
202 203 6.569179 TGTTTCCATTTTAACCTCACTAGC 57.431 37.500 0.00 0.00 0.00 3.42
216 217 5.584251 ACTTCGTTTGCAAAATGTTTCCATT 59.416 32.000 14.67 0.00 43.14 3.16
217 218 5.115480 ACTTCGTTTGCAAAATGTTTCCAT 58.885 33.333 14.67 0.00 0.00 3.41
218 219 4.499183 ACTTCGTTTGCAAAATGTTTCCA 58.501 34.783 14.67 0.00 0.00 3.53
219 220 4.564769 TGACTTCGTTTGCAAAATGTTTCC 59.435 37.500 14.67 0.00 0.00 3.13
220 221 5.694674 TGACTTCGTTTGCAAAATGTTTC 57.305 34.783 14.67 8.70 0.00 2.78
221 222 5.502220 GCATGACTTCGTTTGCAAAATGTTT 60.502 36.000 14.67 0.00 35.22 2.83
222 223 4.025813 GCATGACTTCGTTTGCAAAATGTT 60.026 37.500 14.67 0.00 35.22 2.71
223 224 3.490526 GCATGACTTCGTTTGCAAAATGT 59.509 39.130 14.67 7.74 35.22 2.71
224 225 3.120923 GGCATGACTTCGTTTGCAAAATG 60.121 43.478 14.67 12.80 36.82 2.32
225 226 3.059166 GGCATGACTTCGTTTGCAAAAT 58.941 40.909 14.67 0.00 36.82 1.82
226 227 2.159184 TGGCATGACTTCGTTTGCAAAA 60.159 40.909 14.67 0.00 36.82 2.44
227 228 1.406898 TGGCATGACTTCGTTTGCAAA 59.593 42.857 8.05 8.05 36.82 3.68
228 229 1.028130 TGGCATGACTTCGTTTGCAA 58.972 45.000 0.00 0.00 36.82 4.08
229 230 1.246649 ATGGCATGACTTCGTTTGCA 58.753 45.000 0.00 0.00 36.82 4.08
230 231 3.485947 TTATGGCATGACTTCGTTTGC 57.514 42.857 10.98 0.00 0.00 3.68
231 232 5.490139 AGATTATGGCATGACTTCGTTTG 57.510 39.130 10.98 0.00 0.00 2.93
232 233 4.271049 CGAGATTATGGCATGACTTCGTTT 59.729 41.667 10.98 0.00 0.00 3.60
233 234 3.804325 CGAGATTATGGCATGACTTCGTT 59.196 43.478 10.98 0.00 0.00 3.85
234 235 3.384668 CGAGATTATGGCATGACTTCGT 58.615 45.455 10.98 0.00 0.00 3.85
235 236 2.156504 GCGAGATTATGGCATGACTTCG 59.843 50.000 10.98 15.09 31.94 3.79
236 237 2.481952 GGCGAGATTATGGCATGACTTC 59.518 50.000 10.98 2.68 33.59 3.01
237 238 2.498167 GGCGAGATTATGGCATGACTT 58.502 47.619 10.98 0.00 33.59 3.01
238 239 1.606480 CGGCGAGATTATGGCATGACT 60.606 52.381 10.98 6.43 33.59 3.41
239 240 0.792640 CGGCGAGATTATGGCATGAC 59.207 55.000 10.98 0.00 33.59 3.06
240 241 0.392706 ACGGCGAGATTATGGCATGA 59.607 50.000 16.62 1.24 33.59 3.07
241 242 1.229428 AACGGCGAGATTATGGCATG 58.771 50.000 16.62 0.00 33.59 4.06
242 243 1.967319 AAACGGCGAGATTATGGCAT 58.033 45.000 16.62 4.88 33.59 4.40
243 244 1.745232 AAAACGGCGAGATTATGGCA 58.255 45.000 16.62 0.00 33.59 4.92
244 245 4.483476 AATAAAACGGCGAGATTATGGC 57.517 40.909 16.62 0.00 0.00 4.40
245 246 6.950545 TGTAAATAAAACGGCGAGATTATGG 58.049 36.000 16.62 0.00 0.00 2.74
246 247 8.829514 TTTGTAAATAAAACGGCGAGATTATG 57.170 30.769 16.62 0.00 0.00 1.90
248 249 9.493206 GAATTTGTAAATAAAACGGCGAGATTA 57.507 29.630 16.62 10.00 0.00 1.75
249 250 8.024285 TGAATTTGTAAATAAAACGGCGAGATT 58.976 29.630 16.62 7.88 0.00 2.40
250 251 7.531716 TGAATTTGTAAATAAAACGGCGAGAT 58.468 30.769 16.62 0.40 0.00 2.75
251 252 6.900189 TGAATTTGTAAATAAAACGGCGAGA 58.100 32.000 16.62 0.00 0.00 4.04
252 253 7.734538 ATGAATTTGTAAATAAAACGGCGAG 57.265 32.000 16.62 0.00 0.00 5.03
253 254 9.790389 ATAATGAATTTGTAAATAAAACGGCGA 57.210 25.926 16.62 0.00 0.00 5.54
287 288 9.243105 CCCCTCTGAACAAATTTCTAGAATAAA 57.757 33.333 5.89 0.00 0.00 1.40
288 289 7.834181 CCCCCTCTGAACAAATTTCTAGAATAA 59.166 37.037 5.89 0.00 0.00 1.40
289 290 7.036863 ACCCCCTCTGAACAAATTTCTAGAATA 60.037 37.037 5.89 0.00 0.00 1.75
290 291 6.190587 CCCCCTCTGAACAAATTTCTAGAAT 58.809 40.000 5.89 0.00 0.00 2.40
291 292 5.074515 ACCCCCTCTGAACAAATTTCTAGAA 59.925 40.000 0.00 0.00 0.00 2.10
292 293 4.601857 ACCCCCTCTGAACAAATTTCTAGA 59.398 41.667 0.00 0.00 0.00 2.43
293 294 4.923415 ACCCCCTCTGAACAAATTTCTAG 58.077 43.478 0.00 0.00 0.00 2.43
294 295 6.457159 TTACCCCCTCTGAACAAATTTCTA 57.543 37.500 0.00 0.00 0.00 2.10
295 296 3.903530 ACCCCCTCTGAACAAATTTCT 57.096 42.857 0.00 0.00 0.00 2.52
296 297 6.605471 ATTTACCCCCTCTGAACAAATTTC 57.395 37.500 0.00 0.00 0.00 2.17
297 298 8.679344 ATAATTTACCCCCTCTGAACAAATTT 57.321 30.769 0.00 0.00 0.00 1.82
298 299 7.068226 CGATAATTTACCCCCTCTGAACAAATT 59.932 37.037 0.00 0.00 0.00 1.82
299 300 6.546034 CGATAATTTACCCCCTCTGAACAAAT 59.454 38.462 0.00 0.00 0.00 2.32
300 301 5.883673 CGATAATTTACCCCCTCTGAACAAA 59.116 40.000 0.00 0.00 0.00 2.83
301 302 5.190132 TCGATAATTTACCCCCTCTGAACAA 59.810 40.000 0.00 0.00 0.00 2.83
302 303 4.717778 TCGATAATTTACCCCCTCTGAACA 59.282 41.667 0.00 0.00 0.00 3.18
303 304 5.286267 TCGATAATTTACCCCCTCTGAAC 57.714 43.478 0.00 0.00 0.00 3.18
304 305 5.961398 TTCGATAATTTACCCCCTCTGAA 57.039 39.130 0.00 0.00 0.00 3.02
305 306 6.509523 AATTCGATAATTTACCCCCTCTGA 57.490 37.500 0.00 0.00 30.98 3.27
306 307 9.953565 TTATAATTCGATAATTTACCCCCTCTG 57.046 33.333 0.00 0.00 36.67 3.35
334 335 9.528018 ACAATTCGATAAAAATAATTTGCGGAT 57.472 25.926 0.00 0.00 0.00 4.18
335 336 8.918961 ACAATTCGATAAAAATAATTTGCGGA 57.081 26.923 0.00 0.00 0.00 5.54
349 350 8.551205 GCTCATGAAGATGTTACAATTCGATAA 58.449 33.333 0.00 0.00 0.00 1.75
350 351 7.096065 CGCTCATGAAGATGTTACAATTCGATA 60.096 37.037 0.00 0.00 0.00 2.92
351 352 6.292542 CGCTCATGAAGATGTTACAATTCGAT 60.293 38.462 0.00 2.88 0.00 3.59
352 353 5.005682 CGCTCATGAAGATGTTACAATTCGA 59.994 40.000 0.00 0.00 0.00 3.71
353 354 5.193216 CGCTCATGAAGATGTTACAATTCG 58.807 41.667 0.00 0.00 0.00 3.34
354 355 5.294306 TCCGCTCATGAAGATGTTACAATTC 59.706 40.000 0.00 6.70 0.00 2.17
355 356 5.065218 GTCCGCTCATGAAGATGTTACAATT 59.935 40.000 0.00 0.00 0.00 2.32
356 357 4.572389 GTCCGCTCATGAAGATGTTACAAT 59.428 41.667 0.00 0.00 0.00 2.71
357 358 3.932710 GTCCGCTCATGAAGATGTTACAA 59.067 43.478 0.00 0.00 0.00 2.41
358 359 3.056179 TGTCCGCTCATGAAGATGTTACA 60.056 43.478 0.00 0.00 0.00 2.41
359 360 3.307242 GTGTCCGCTCATGAAGATGTTAC 59.693 47.826 0.00 0.00 0.00 2.50
365 366 0.904649 ATGGTGTCCGCTCATGAAGA 59.095 50.000 0.00 0.00 0.00 2.87
366 367 2.602257 TATGGTGTCCGCTCATGAAG 57.398 50.000 0.00 0.00 0.00 3.02
374 375 2.622064 AGAAGGAATATGGTGTCCGC 57.378 50.000 0.00 0.00 39.06 5.54
376 377 8.515414 GCAATATTAAGAAGGAATATGGTGTCC 58.485 37.037 0.00 0.00 31.36 4.02
377 378 9.066892 TGCAATATTAAGAAGGAATATGGTGTC 57.933 33.333 0.00 0.00 31.36 3.67
386 387 8.257306 GGAAAATGGTGCAATATTAAGAAGGAA 58.743 33.333 0.00 0.00 0.00 3.36
387 388 7.619302 AGGAAAATGGTGCAATATTAAGAAGGA 59.381 33.333 0.00 0.00 0.00 3.36
388 389 7.785033 AGGAAAATGGTGCAATATTAAGAAGG 58.215 34.615 0.00 0.00 0.00 3.46
389 390 9.657419 AAAGGAAAATGGTGCAATATTAAGAAG 57.343 29.630 0.00 0.00 0.00 2.85
425 427 6.915300 TGTATTGATTTGAAACCGTTTGAGTG 59.085 34.615 0.00 0.00 0.00 3.51
428 430 7.759886 TGTTTGTATTGATTTGAAACCGTTTGA 59.240 29.630 0.00 0.00 0.00 2.69
433 435 6.865726 TGGATGTTTGTATTGATTTGAAACCG 59.134 34.615 0.00 0.00 0.00 4.44
441 443 6.101332 GCATGTGTGGATGTTTGTATTGATT 58.899 36.000 0.00 0.00 0.00 2.57
442 444 5.653507 GCATGTGTGGATGTTTGTATTGAT 58.346 37.500 0.00 0.00 0.00 2.57
443 445 4.379290 CGCATGTGTGGATGTTTGTATTGA 60.379 41.667 0.00 0.00 0.00 2.57
444 446 3.853103 CGCATGTGTGGATGTTTGTATTG 59.147 43.478 0.00 0.00 0.00 1.90
449 451 1.536766 AGTCGCATGTGTGGATGTTTG 59.463 47.619 6.09 0.00 0.00 2.93
455 457 4.759693 AGAAAATTAAGTCGCATGTGTGGA 59.240 37.500 6.09 0.00 0.00 4.02
476 478 8.579850 TTGGGAAGACTAATTAAGTACGTAGA 57.420 34.615 0.00 0.00 39.07 2.59
479 481 7.548075 CACATTGGGAAGACTAATTAAGTACGT 59.452 37.037 0.00 0.00 39.07 3.57
481 483 8.788325 ACACATTGGGAAGACTAATTAAGTAC 57.212 34.615 0.00 0.00 39.07 2.73
482 484 9.802039 AAACACATTGGGAAGACTAATTAAGTA 57.198 29.630 0.00 0.00 39.07 2.24
483 485 8.706322 AAACACATTGGGAAGACTAATTAAGT 57.294 30.769 0.00 0.00 42.80 2.24
484 486 9.014297 AGAAACACATTGGGAAGACTAATTAAG 57.986 33.333 0.00 0.00 0.00 1.85
485 487 8.934023 AGAAACACATTGGGAAGACTAATTAA 57.066 30.769 0.00 0.00 0.00 1.40
487 489 8.934023 TTAGAAACACATTGGGAAGACTAATT 57.066 30.769 0.00 0.00 0.00 1.40
488 490 8.960591 CATTAGAAACACATTGGGAAGACTAAT 58.039 33.333 0.00 0.00 0.00 1.73
491 493 5.711976 CCATTAGAAACACATTGGGAAGACT 59.288 40.000 0.00 0.00 0.00 3.24
494 496 4.220382 TGCCATTAGAAACACATTGGGAAG 59.780 41.667 0.00 0.00 0.00 3.46
523 531 2.158534 TGTAATGCCCGGCCTCATTAAT 60.159 45.455 17.76 0.00 37.04 1.40
526 534 0.033601 TTGTAATGCCCGGCCTCATT 60.034 50.000 7.03 15.75 36.87 2.57
537 545 0.878416 TGGCGTCAACCTTGTAATGC 59.122 50.000 0.00 0.00 0.00 3.56
539 547 3.823873 TGAAATGGCGTCAACCTTGTAAT 59.176 39.130 0.00 0.00 0.00 1.89
540 548 3.215151 TGAAATGGCGTCAACCTTGTAA 58.785 40.909 0.00 0.00 0.00 2.41
541 549 2.852449 TGAAATGGCGTCAACCTTGTA 58.148 42.857 0.00 0.00 0.00 2.41
542 550 1.686355 TGAAATGGCGTCAACCTTGT 58.314 45.000 0.00 0.00 0.00 3.16
543 551 3.302365 AATGAAATGGCGTCAACCTTG 57.698 42.857 0.00 0.00 0.00 3.61
544 552 4.039124 AGAAAATGAAATGGCGTCAACCTT 59.961 37.500 0.00 0.00 0.00 3.50
568 576 4.023291 GGAATGAATTGGCCACTTAAGGA 58.977 43.478 3.88 0.00 0.00 3.36
581 589 1.468520 CTGTTGACGGCGGAATGAATT 59.531 47.619 13.24 0.00 0.00 2.17
613 621 1.139520 GCAAATAAGTGCAGCCCGG 59.860 57.895 0.00 0.00 44.29 5.73
779 795 0.309612 GGCAATTTATACCGCCGTGG 59.690 55.000 0.00 0.00 46.41 4.94
808 824 3.814268 CGGCCGGGCAGACAAATG 61.814 66.667 29.19 4.70 0.00 2.32
892 912 1.006922 GGCTGCCAAGAAGTTGCAC 60.007 57.895 15.17 0.00 31.64 4.57
909 929 2.122189 GGGAGGGAGGGAGATGGG 60.122 72.222 0.00 0.00 0.00 4.00
910 930 1.152139 GAGGGAGGGAGGGAGATGG 60.152 68.421 0.00 0.00 0.00 3.51
911 931 1.152139 GGAGGGAGGGAGGGAGATG 60.152 68.421 0.00 0.00 0.00 2.90
912 932 1.630333 TGGAGGGAGGGAGGGAGAT 60.630 63.158 0.00 0.00 0.00 2.75
913 933 2.204624 TGGAGGGAGGGAGGGAGA 60.205 66.667 0.00 0.00 0.00 3.71
914 934 2.041405 GTGGAGGGAGGGAGGGAG 60.041 72.222 0.00 0.00 0.00 4.30
915 935 3.695825 GGTGGAGGGAGGGAGGGA 61.696 72.222 0.00 0.00 0.00 4.20
916 936 4.825679 GGGTGGAGGGAGGGAGGG 62.826 77.778 0.00 0.00 0.00 4.30
917 937 4.825679 GGGGTGGAGGGAGGGAGG 62.826 77.778 0.00 0.00 0.00 4.30
1079 1099 0.174845 TGCAGAGGGTAAACGATCGG 59.825 55.000 20.98 1.23 0.00 4.18
1120 1156 2.134933 GGATCGGAGGGAGGTCACC 61.135 68.421 0.00 0.00 0.00 4.02
1121 1157 0.688087 AAGGATCGGAGGGAGGTCAC 60.688 60.000 0.00 0.00 0.00 3.67
1122 1158 0.687757 CAAGGATCGGAGGGAGGTCA 60.688 60.000 0.00 0.00 0.00 4.02
1123 1159 1.403687 CCAAGGATCGGAGGGAGGTC 61.404 65.000 0.00 0.00 0.00 3.85
1124 1160 1.383248 CCAAGGATCGGAGGGAGGT 60.383 63.158 0.00 0.00 0.00 3.85
1125 1161 2.812619 GCCAAGGATCGGAGGGAGG 61.813 68.421 0.00 0.00 0.00 4.30
1126 1162 2.825264 GCCAAGGATCGGAGGGAG 59.175 66.667 0.00 0.00 0.00 4.30
1127 1163 3.154473 CGCCAAGGATCGGAGGGA 61.154 66.667 0.00 0.00 0.00 4.20
1128 1164 4.918201 GCGCCAAGGATCGGAGGG 62.918 72.222 0.00 0.00 0.00 4.30
1129 1165 4.918201 GGCGCCAAGGATCGGAGG 62.918 72.222 24.80 0.00 0.00 4.30
1130 1166 3.466791 ATGGCGCCAAGGATCGGAG 62.467 63.158 36.33 0.00 0.00 4.63
1131 1167 3.479203 ATGGCGCCAAGGATCGGA 61.479 61.111 36.33 6.47 0.00 4.55
1132 1168 3.282157 CATGGCGCCAAGGATCGG 61.282 66.667 36.33 12.95 0.00 4.18
1133 1169 3.282157 CCATGGCGCCAAGGATCG 61.282 66.667 40.94 20.84 36.99 3.69
1134 1170 2.908940 CCCATGGCGCCAAGGATC 60.909 66.667 44.01 11.56 36.99 3.36
1135 1171 4.528039 CCCCATGGCGCCAAGGAT 62.528 66.667 44.01 23.20 36.99 3.24
1499 1550 2.961526 AACTATGAAGATGGCGACGT 57.038 45.000 0.00 0.00 0.00 4.34
1500 1551 3.865745 AGAAAACTATGAAGATGGCGACG 59.134 43.478 0.00 0.00 0.00 5.12
1543 1596 3.435105 AATCAAGCACGAAAACAGCAA 57.565 38.095 0.00 0.00 0.00 3.91
1547 1600 6.975197 TGTAAATGAAATCAAGCACGAAAACA 59.025 30.769 0.00 0.00 0.00 2.83
1548 1601 7.388290 TGTAAATGAAATCAAGCACGAAAAC 57.612 32.000 0.00 0.00 0.00 2.43
1566 1619 8.777865 TCTCGATCAGAACTGAAATTGTAAAT 57.222 30.769 8.59 0.00 43.58 1.40
1570 1623 7.496529 TTTTCTCGATCAGAACTGAAATTGT 57.503 32.000 8.59 0.00 41.13 2.71
1571 1624 8.449397 AGATTTTCTCGATCAGAACTGAAATTG 58.551 33.333 8.59 0.00 41.13 2.32
1680 1748 4.142403 TGGTTGGTTAGTAATCGTACCTCG 60.142 45.833 14.77 0.00 41.41 4.63
1698 1766 3.116959 TGGTAGGGTTAGGGTATGGTTG 58.883 50.000 0.00 0.00 0.00 3.77
1721 1789 8.763356 CGTTTGGATGAAGATCAAAATTCAAAA 58.237 29.630 8.67 0.57 38.80 2.44
1722 1790 8.140628 TCGTTTGGATGAAGATCAAAATTCAAA 58.859 29.630 0.00 0.00 38.80 2.69
1723 1791 7.656412 TCGTTTGGATGAAGATCAAAATTCAA 58.344 30.769 0.00 0.00 38.80 2.69
1724 1792 7.213216 TCGTTTGGATGAAGATCAAAATTCA 57.787 32.000 0.00 0.00 34.59 2.57
1936 2005 1.592669 GATGATGTCCACCCGCTCG 60.593 63.158 0.00 0.00 0.00 5.03
2044 2115 3.510459 TGGAGTCACTGAATCTTGGAGA 58.490 45.455 6.46 0.00 0.00 3.71
2114 2185 1.656818 CGGTGTTGATGTCCATGGCC 61.657 60.000 6.96 0.00 0.00 5.36
2180 2251 1.534595 GACACTTGCAGGAAGAGCTTG 59.465 52.381 8.96 0.00 35.42 4.01
2453 2533 0.598562 GCTTGATCTCGGCCTCGATA 59.401 55.000 0.00 0.00 45.04 2.92
2462 2542 1.150567 CGAAGGCCAGCTTGATCTCG 61.151 60.000 5.01 0.00 0.00 4.04
2544 2624 5.655394 TGTATCCATTGCCTACCTCTCTAT 58.345 41.667 0.00 0.00 0.00 1.98
2555 2635 3.132646 TGGCAAGAAATGTATCCATTGCC 59.867 43.478 17.51 17.51 45.44 4.52
2562 2642 4.276926 GGAGGTCATGGCAAGAAATGTATC 59.723 45.833 0.00 0.00 0.00 2.24
2585 2668 1.203523 CCTTCAGACCGAGACCAAGAG 59.796 57.143 0.00 0.00 0.00 2.85
2586 2669 1.257743 CCTTCAGACCGAGACCAAGA 58.742 55.000 0.00 0.00 0.00 3.02
2608 2691 7.062605 CACATTCAGCAAATCAACCTAATGTTC 59.937 37.037 0.00 0.00 34.91 3.18
2617 2700 2.991190 CCAGCACATTCAGCAAATCAAC 59.009 45.455 0.00 0.00 0.00 3.18
2631 2714 3.306088 GCTCTACAAGAGTAACCAGCACA 60.306 47.826 5.86 0.00 44.12 4.57
2678 2761 0.533308 TGGCCTTGGTGAACACGTAC 60.533 55.000 3.32 0.00 0.00 3.67
2744 2827 4.101448 ACGCTGGGCCTGATGGTC 62.101 66.667 15.36 0.00 37.19 4.02
2830 2913 5.072741 ACTCTGCAAGATTGTACCACATTT 58.927 37.500 3.37 0.00 45.62 2.32
3008 3092 1.399791 GCCTCACTAGTGCATTTGCTC 59.600 52.381 18.45 0.07 42.66 4.26
3015 3099 0.909133 TCCATGGCCTCACTAGTGCA 60.909 55.000 18.45 10.48 0.00 4.57
3017 3101 0.179062 GCTCCATGGCCTCACTAGTG 60.179 60.000 17.17 17.17 0.00 2.74
3019 3103 0.106335 CAGCTCCATGGCCTCACTAG 59.894 60.000 6.96 0.00 0.00 2.57
3067 3156 1.335872 GGAACCTTGCCAAATGACACG 60.336 52.381 0.00 0.00 0.00 4.49
3073 3162 2.635443 CGCCGGAACCTTGCCAAAT 61.635 57.895 5.05 0.00 0.00 2.32
3506 3599 0.888285 GATGCTACATGGGCCTGCTC 60.888 60.000 4.53 0.00 0.00 4.26
3512 3605 5.585390 GCATATAAATGATGCTACATGGGC 58.415 41.667 0.00 1.45 45.14 5.36
3575 3669 1.796459 GTTGAACCTGCATACGTCGTT 59.204 47.619 1.78 0.00 0.00 3.85
3593 3687 1.178534 CCCTCCGTGTTGCCATTGTT 61.179 55.000 0.00 0.00 0.00 2.83
3634 3728 4.436998 AACGCCGCCTTCTCCTCG 62.437 66.667 0.00 0.00 0.00 4.63
3811 3911 1.335872 GCATTTCCCTGTTCGGTGTTG 60.336 52.381 0.00 0.00 0.00 3.33
3905 4005 6.017440 CCTTAGTTAAGTTGCTGCTAACACAA 60.017 38.462 14.29 6.91 33.02 3.33
3995 4098 4.104102 ACAACATGTAGAGGGGAGAACAAA 59.896 41.667 0.00 0.00 0.00 2.83
4037 4143 8.210265 TCTCCAAAGCTTTATTTGTTTTTCCAT 58.790 29.630 12.25 0.00 38.28 3.41
4089 4195 3.131577 TCTGTATTATCGACGGCAAGGTT 59.868 43.478 0.00 0.00 0.00 3.50
4091 4197 3.364889 TCTGTATTATCGACGGCAAGG 57.635 47.619 0.00 0.00 0.00 3.61
4095 4201 5.164080 GCTTGTAATCTGTATTATCGACGGC 60.164 44.000 0.00 0.00 30.42 5.68
4181 4287 6.211184 TCCACACTTTGGCAATTTCATAGAAT 59.789 34.615 0.00 0.00 46.47 2.40
4182 4288 5.538053 TCCACACTTTGGCAATTTCATAGAA 59.462 36.000 0.00 0.00 46.47 2.10
4230 4349 2.856000 AGCCACCTGCCCTGAGTT 60.856 61.111 0.00 0.00 42.71 3.01
4687 5041 1.072806 GCCATCATCCAGATAGGCACA 59.927 52.381 11.09 0.00 43.97 4.57
4731 5085 5.809001 TCCATGACACTTTCTCTTTGCTAT 58.191 37.500 0.00 0.00 0.00 2.97
4747 5101 5.643777 AGTGTTAATGCTGTACTTCCATGAC 59.356 40.000 0.00 0.00 0.00 3.06
4791 5145 8.646004 AGATCAGTCATATATGCACTGTAAAGT 58.354 33.333 26.79 17.02 37.30 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.