AutoCloner

Multiple sequence alignment - TraesCS4D01G280600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4D01G280600	chr4D	100.000	2414	0	0	1	2414	451679612	451682025	0.000000e+00	4458.0
1	TraesCS4D01G280600	chr4D	90.083	121	11	1	2286	2406	14524724	14524843	3.210000e-34	156.0
2	TraesCS4D01G280600	chr3D	94.585	1145	54	7	559	1699	358570232	358569092	0.000000e+00	1764.0
3	TraesCS4D01G280600	chr5D	92.333	1226	57	10	531	1727	424819122	424820339	0.000000e+00	1709.0
4	TraesCS4D01G280600	chr5D	80.176	1251	156	50	530	1725	25320015	25318802	0.000000e+00	852.0
5	TraesCS4D01G280600	chr3A	91.867	1205	77	11	533	1727	717899962	717901155	0.000000e+00	1663.0
6	TraesCS4D01G280600	chr3A	90.840	1190	77	16	559	1725	721253116	721254296	0.000000e+00	1565.0
7	TraesCS4D01G280600	chr3A	94.595	37	1	1	526	562	743518550	743518515	3.350000e-04	56.5
8	TraesCS4D01G280600	chr5A	90.968	1229	74	12	528	1725	446424924	446426146	0.000000e+00	1620.0
9	TraesCS4D01G280600	chr5A	88.854	646	43	12	1795	2413	118660635	118659992	0.000000e+00	767.0
10	TraesCS4D01G280600	chr5A	93.243	222	12	3	1	219	564389633	564389854	8.320000e-85	324.0
11	TraesCS4D01G280600	chr5A	78.151	119	12	8	530	636	345363617	345363501	2.000000e-06	63.9
12	TraesCS4D01G280600	chr2A	91.653	1186	73	17	559	1725	588429728	588428550	0.000000e+00	1618.0
13	TraesCS4D01G280600	chr2A	91.552	1160	74	13	527	1675	740095997	740094851	0.000000e+00	1578.0
14	TraesCS4D01G280600	chr2A	93.704	540	28	6	1	537	261677146	261677682	0.000000e+00	804.0
15	TraesCS4D01G280600	chr2A	92.579	539	33	5	1	537	658903010	658902477	0.000000e+00	767.0
16	TraesCS4D01G280600	chr7A	90.793	1173	95	7	559	1727	14303566	14302403	0.000000e+00	1555.0
17	TraesCS4D01G280600	chr7A	89.057	1188	102	8	559	1725	273655558	273654378	0.000000e+00	1448.0
18	TraesCS4D01G280600	chr7A	89.310	1188	65	13	559	1725	667482199	667481053	0.000000e+00	1434.0
19	TraesCS4D01G280600	chr7A	79.272	989	152	37	561	1526	644483832	644482874	2.020000e-180	641.0
20	TraesCS4D01G280600	chr7A	90.987	233	18	3	1	230	40676549	40676317	6.480000e-81	311.0
21	TraesCS4D01G280600	chr6A	90.537	1173	85	14	559	1725	26570497	26569345	0.000000e+00	1528.0
22	TraesCS4D01G280600	chr1D	90.175	1201	79	25	559	1729	391646109	391644918	0.000000e+00	1528.0
23	TraesCS4D01G280600	chr1D	93.358	542	27	6	1	537	181431972	181432509	0.000000e+00	793.0
24	TraesCS4D01G280600	chr7D	98.387	620	10	0	1795	2414	457597592	457598211	0.000000e+00	1090.0
25	TraesCS4D01G280600	chr4A	89.091	495	43	7	9	498	16169745	16169257	2.650000e-169	604.0
26	TraesCS4D01G280600	chr4A	95.570	158	6	1	1	157	429436746	429436589	3.980000e-63	252.0
27	TraesCS4D01G280600	chr5B	90.617	405	35	3	22	425	61552519	61552921	3.530000e-148	534.0
28	TraesCS4D01G280600	chr5B	87.335	379	39	6	9	380	697620694	697620318	2.220000e-115	425.0
29	TraesCS4D01G280600	chrUn	75.369	1084	174	61	584	1622	91510044	91509009	1.020000e-118	436.0
30	TraesCS4D01G280600	chrUn	86.842	114	14	1	425	537	341310511	341310398	2.520000e-25	126.0
31	TraesCS4D01G280600	chrUn	86.842	114	14	1	425	537	341325607	341325494	2.520000e-25	126.0
32	TraesCS4D01G280600	chrUn	86.842	114	14	1	425	537	393508572	393508459	2.520000e-25	126.0
33	TraesCS4D01G280600	chr2D	79.477	497	83	10	22	516	109105547	109105068	3.850000e-88	335.0
34	TraesCS4D01G280600	chr6D	89.256	121	12	1	2286	2406	417886848	417886967	1.500000e-32	150.0
35	TraesCS4D01G280600	chr7B	86.842	114	14	1	425	537	638115364	638115477	2.520000e-25	126.0
36	TraesCS4D01G280600	chr7B	96.875	32	1	0	527	558	208102895	208102926	1.000000e-03	54.7
37	TraesCS4D01G280600	chr4B	93.750	64	1	3	1727	1790	565090220	565090280	2.560000e-15	93.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4D01G280600	chr4D	451679612	451682025	2413	False	4458	4458	100.000	1	2414	1	chr4D.!!$F2	2413
1	TraesCS4D01G280600	chr3D	358569092	358570232	1140	True	1764	1764	94.585	559	1699	1	chr3D.!!$R1	1140
2	TraesCS4D01G280600	chr5D	424819122	424820339	1217	False	1709	1709	92.333	531	1727	1	chr5D.!!$F1	1196
3	TraesCS4D01G280600	chr5D	25318802	25320015	1213	True	852	852	80.176	530	1725	1	chr5D.!!$R1	1195
4	TraesCS4D01G280600	chr3A	717899962	717901155	1193	False	1663	1663	91.867	533	1727	1	chr3A.!!$F1	1194
5	TraesCS4D01G280600	chr3A	721253116	721254296	1180	False	1565	1565	90.840	559	1725	1	chr3A.!!$F2	1166
6	TraesCS4D01G280600	chr5A	446424924	446426146	1222	False	1620	1620	90.968	528	1725	1	chr5A.!!$F1	1197
7	TraesCS4D01G280600	chr5A	118659992	118660635	643	True	767	767	88.854	1795	2413	1	chr5A.!!$R1	618
8	TraesCS4D01G280600	chr2A	588428550	588429728	1178	True	1618	1618	91.653	559	1725	1	chr2A.!!$R1	1166
9	TraesCS4D01G280600	chr2A	740094851	740095997	1146	True	1578	1578	91.552	527	1675	1	chr2A.!!$R3	1148
10	TraesCS4D01G280600	chr2A	261677146	261677682	536	False	804	804	93.704	1	537	1	chr2A.!!$F1	536
11	TraesCS4D01G280600	chr2A	658902477	658903010	533	True	767	767	92.579	1	537	1	chr2A.!!$R2	536
12	TraesCS4D01G280600	chr7A	14302403	14303566	1163	True	1555	1555	90.793	559	1727	1	chr7A.!!$R1	1168
13	TraesCS4D01G280600	chr7A	273654378	273655558	1180	True	1448	1448	89.057	559	1725	1	chr7A.!!$R3	1166
14	TraesCS4D01G280600	chr7A	667481053	667482199	1146	True	1434	1434	89.310	559	1725	1	chr7A.!!$R5	1166
15	TraesCS4D01G280600	chr7A	644482874	644483832	958	True	641	641	79.272	561	1526	1	chr7A.!!$R4	965
16	TraesCS4D01G280600	chr6A	26569345	26570497	1152	True	1528	1528	90.537	559	1725	1	chr6A.!!$R1	1166
17	TraesCS4D01G280600	chr1D	391644918	391646109	1191	True	1528	1528	90.175	559	1729	1	chr1D.!!$R1	1170
18	TraesCS4D01G280600	chr1D	181431972	181432509	537	False	793	793	93.358	1	537	1	chr1D.!!$F1	536
19	TraesCS4D01G280600	chr7D	457597592	457598211	619	False	1090	1090	98.387	1795	2414	1	chr7D.!!$F1	619
20	TraesCS4D01G280600	chrUn	91509009	91510044	1035	True	436	436	75.369	584	1622	1	chrUn.!!$R1	1038

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
407	410	0.744874	TCGATTCCTAGGAACGCCAG	59.255	55.0	26.57	15.02	36.91	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1756	1974	0.178906	TGGGTGATGTGGACTCTGGA	60.179	55.0	0.0	0.0	0.0	3.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
308	311	9.602568	TGACTACAGTGTTTTGTTCTTATACAA	57.397	29.630	0.00	0.00	36.30	2.41
380	383	2.224548	ACCAGTAAGTTGAGTCAAGGGC	60.225	50.000	5.62	0.00	0.00	5.19
407	410	0.744874	TCGATTCCTAGGAACGCCAG	59.255	55.000	26.57	15.02	36.91	4.85
514	519	1.301401	CGCCAGAAACTCCAACCGA	60.301	57.895	0.00	0.00	0.00	4.69
663	762	3.236618	GACAGGTCGCGCGCTTTTT	62.237	57.895	30.48	9.06	0.00	1.94
749	850	2.187946	CTTCCTCTTCCGCGCCAT	59.812	61.111	0.00	0.00	0.00	4.40
897	1035	2.570135	GGGTTCTACTCGGAGATACGT	58.430	52.381	12.86	0.00	33.89	3.57
1141	1279	2.362503	AGGACGAGCGGGTCATGA	60.363	61.111	8.06	0.00	38.70	3.07
1371	1522	2.588620	GATACCTCGGATCAGACCAGT	58.411	52.381	0.00	0.00	0.00	4.00
1430	1598	2.625790	AGTAGGCTGTAGCTGCACTATC	59.374	50.000	0.00	0.00	41.70	2.08
1431	1599	1.786937	AGGCTGTAGCTGCACTATCT	58.213	50.000	0.00	0.00	41.70	1.98
1432	1600	2.950781	AGGCTGTAGCTGCACTATCTA	58.049	47.619	0.00	0.00	41.70	1.98
1667	1885	1.952133	CGCCAAACCAGACGAACGA	60.952	57.895	0.14	0.00	0.00	3.85
1729	1947	2.169352	GCTGTTGGAGATGCTCTTAGGA	59.831	50.000	0.00	0.00	0.00	2.94
1730	1948	3.740764	GCTGTTGGAGATGCTCTTAGGAG	60.741	52.174	0.00	0.00	42.18	3.69
1740	1958	1.988293	CTCTTAGGAGCTCCCATCGA	58.012	55.000	29.54	18.30	37.41	3.59
1741	1959	1.611491	CTCTTAGGAGCTCCCATCGAC	59.389	57.143	29.54	2.09	37.41	4.20
1742	1960	0.312416	CTTAGGAGCTCCCATCGACG	59.688	60.000	29.54	7.23	37.41	5.12
1743	1961	0.106868	TTAGGAGCTCCCATCGACGA	60.107	55.000	29.54	0.00	37.41	4.20
1744	1962	0.818445	TAGGAGCTCCCATCGACGAC	60.818	60.000	29.54	0.00	37.41	4.34
1745	1963	2.413765	GAGCTCCCATCGACGACC	59.586	66.667	0.87	0.00	0.00	4.79
1746	1964	2.362503	AGCTCCCATCGACGACCA	60.363	61.111	0.00	0.00	0.00	4.02
1747	1965	1.739338	GAGCTCCCATCGACGACCAT	61.739	60.000	0.87	0.00	0.00	3.55
1748	1966	0.467474	AGCTCCCATCGACGACCATA	60.467	55.000	0.00	0.00	0.00	2.74
1749	1967	0.318784	GCTCCCATCGACGACCATAC	60.319	60.000	0.00	0.00	0.00	2.39
1750	1968	1.029681	CTCCCATCGACGACCATACA	58.970	55.000	0.00	0.00	0.00	2.29
1751	1969	1.407618	CTCCCATCGACGACCATACAA	59.592	52.381	0.00	0.00	0.00	2.41
1752	1970	1.826096	TCCCATCGACGACCATACAAA	59.174	47.619	0.00	0.00	0.00	2.83
1753	1971	1.931172	CCCATCGACGACCATACAAAC	59.069	52.381	0.00	0.00	0.00	2.93
1754	1972	1.931172	CCATCGACGACCATACAAACC	59.069	52.381	0.00	0.00	0.00	3.27
1755	1973	2.418197	CCATCGACGACCATACAAACCT	60.418	50.000	0.00	0.00	0.00	3.50
1756	1974	3.259064	CATCGACGACCATACAAACCTT	58.741	45.455	0.00	0.00	0.00	3.50
1757	1975	2.950433	TCGACGACCATACAAACCTTC	58.050	47.619	0.00	0.00	0.00	3.46
1758	1976	1.997606	CGACGACCATACAAACCTTCC	59.002	52.381	0.00	0.00	0.00	3.46
1759	1977	2.610976	CGACGACCATACAAACCTTCCA	60.611	50.000	0.00	0.00	0.00	3.53
1760	1978	3.000727	GACGACCATACAAACCTTCCAG	58.999	50.000	0.00	0.00	0.00	3.86
1761	1979	2.635915	ACGACCATACAAACCTTCCAGA	59.364	45.455	0.00	0.00	0.00	3.86
1762	1980	3.262420	CGACCATACAAACCTTCCAGAG	58.738	50.000	0.00	0.00	0.00	3.35
1763	1981	3.306780	CGACCATACAAACCTTCCAGAGT	60.307	47.826	0.00	0.00	0.00	3.24
1764	1982	4.254492	GACCATACAAACCTTCCAGAGTC	58.746	47.826	0.00	0.00	0.00	3.36
1765	1983	3.009143	ACCATACAAACCTTCCAGAGTCC	59.991	47.826	0.00	0.00	0.00	3.85
1766	1984	3.009033	CCATACAAACCTTCCAGAGTCCA	59.991	47.826	0.00	0.00	0.00	4.02
1767	1985	2.640316	ACAAACCTTCCAGAGTCCAC	57.360	50.000	0.00	0.00	0.00	4.02
1768	1986	1.843851	ACAAACCTTCCAGAGTCCACA	59.156	47.619	0.00	0.00	0.00	4.17
1769	1987	2.443255	ACAAACCTTCCAGAGTCCACAT	59.557	45.455	0.00	0.00	0.00	3.21
1770	1988	3.077359	CAAACCTTCCAGAGTCCACATC	58.923	50.000	0.00	0.00	0.00	3.06
1771	1989	2.030027	ACCTTCCAGAGTCCACATCA	57.970	50.000	0.00	0.00	0.00	3.07
1772	1990	1.625818	ACCTTCCAGAGTCCACATCAC	59.374	52.381	0.00	0.00	0.00	3.06
1773	1991	1.065854	CCTTCCAGAGTCCACATCACC	60.066	57.143	0.00	0.00	0.00	4.02
1774	1992	0.984230	TTCCAGAGTCCACATCACCC	59.016	55.000	0.00	0.00	0.00	4.61
1775	1993	0.178906	TCCAGAGTCCACATCACCCA	60.179	55.000	0.00	0.00	0.00	4.51
1776	1994	0.914644	CCAGAGTCCACATCACCCAT	59.085	55.000	0.00	0.00	0.00	4.00
1777	1995	1.283029	CCAGAGTCCACATCACCCATT	59.717	52.381	0.00	0.00	0.00	3.16
1778	1996	2.636830	CAGAGTCCACATCACCCATTC	58.363	52.381	0.00	0.00	0.00	2.67
1779	1997	2.238144	CAGAGTCCACATCACCCATTCT	59.762	50.000	0.00	0.00	0.00	2.40
1780	1998	2.503356	AGAGTCCACATCACCCATTCTC	59.497	50.000	0.00	0.00	0.00	2.87
1781	1999	2.237143	GAGTCCACATCACCCATTCTCA	59.763	50.000	0.00	0.00	0.00	3.27
1782	2000	2.644299	AGTCCACATCACCCATTCTCAA	59.356	45.455	0.00	0.00	0.00	3.02
1783	2001	2.749621	GTCCACATCACCCATTCTCAAC	59.250	50.000	0.00	0.00	0.00	3.18
1784	2002	2.374839	TCCACATCACCCATTCTCAACA	59.625	45.455	0.00	0.00	0.00	3.33
1785	2003	3.156293	CCACATCACCCATTCTCAACAA	58.844	45.455	0.00	0.00	0.00	2.83
1786	2004	3.573538	CCACATCACCCATTCTCAACAAA	59.426	43.478	0.00	0.00	0.00	2.83
1787	2005	4.039004	CCACATCACCCATTCTCAACAAAA	59.961	41.667	0.00	0.00	0.00	2.44
1788	2006	5.453057	CCACATCACCCATTCTCAACAAAAA	60.453	40.000	0.00	0.00	0.00	1.94
2066	2311	1.676635	GGAGCTCCATTGCAGCACA	60.677	57.895	28.43	0.00	39.56	4.57
2149	2394	2.036098	CAGCACCAATGGCCTCCA	59.964	61.111	3.32	0.00	38.19	3.86
2313	2558	4.379143	CGTCGCTCACCGTCGTGA	62.379	66.667	0.00	0.00	46.91	4.35

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
47	49	7.333174	ACAAAAAGTTCACCGATTCACAAAAAT	59.667	29.630	0.00	0.00	0.00	1.82
121	123	7.806409	TCACAAAATCTGAAGAAGTTCATCA	57.194	32.000	10.20	10.20	41.96	3.07
217	220	7.307632	CGTGATTTCTTCTGACAAAAGTCTCAT	60.308	37.037	0.00	0.00	0.00	2.90
284	287	8.545420	CGTTGTATAAGAACAAAACACTGTAGT	58.455	33.333	0.00	0.00	40.85	2.73
308	311	1.683790	GAAATACTGCAGCGCGACGT	61.684	55.000	15.27	0.35	0.00	4.34
380	383	0.317938	CCTAGGAATCGAACTCGCGG	60.318	60.000	6.13	0.00	39.60	6.46
431	434	4.348656	CAGTTCGATTTAGTAGTAGCGCA	58.651	43.478	11.47	0.00	0.00	6.09
444	447	0.512952	GAACACGCAGCAGTTCGATT	59.487	50.000	10.88	0.00	36.45	3.34
663	762	2.413765	GGAAACGGTGCGCCAAAA	59.586	55.556	18.18	0.00	34.09	2.44
752	853	4.394712	AGGAAGCGGTGAAGGCGG	62.395	66.667	0.00	0.00	35.00	6.13
998	1136	1.336517	GGACGTCGTGGAAGTTCATCA	60.337	52.381	9.92	0.00	0.00	3.07
1170	1309	1.185618	AGGCTTGCTCGTAGGTGACA	61.186	55.000	0.00	0.00	0.00	3.58
1371	1522	1.437573	GTCATCGTCGCCATCCTCA	59.562	57.895	0.00	0.00	0.00	3.86
1729	1947	0.467474	TATGGTCGTCGATGGGAGCT	60.467	55.000	4.48	0.00	0.00	4.09
1730	1948	0.318784	GTATGGTCGTCGATGGGAGC	60.319	60.000	4.48	5.64	0.00	4.70
1731	1949	1.029681	TGTATGGTCGTCGATGGGAG	58.970	55.000	4.48	0.00	0.00	4.30
1732	1950	1.476477	TTGTATGGTCGTCGATGGGA	58.524	50.000	4.48	0.00	0.00	4.37
1733	1951	1.931172	GTTTGTATGGTCGTCGATGGG	59.069	52.381	4.48	0.00	0.00	4.00
1734	1952	1.931172	GGTTTGTATGGTCGTCGATGG	59.069	52.381	4.48	0.00	0.00	3.51
1735	1953	2.888594	AGGTTTGTATGGTCGTCGATG	58.111	47.619	0.00	0.00	0.00	3.84
1736	1954	3.518590	GAAGGTTTGTATGGTCGTCGAT	58.481	45.455	0.00	0.00	0.00	3.59
1737	1955	2.353011	GGAAGGTTTGTATGGTCGTCGA	60.353	50.000	0.00	0.00	0.00	4.20
1738	1956	1.997606	GGAAGGTTTGTATGGTCGTCG	59.002	52.381	0.00	0.00	0.00	5.12
1739	1957	3.000727	CTGGAAGGTTTGTATGGTCGTC	58.999	50.000	0.00	0.00	0.00	4.20
1740	1958	2.635915	TCTGGAAGGTTTGTATGGTCGT	59.364	45.455	0.00	0.00	0.00	4.34
1741	1959	3.262420	CTCTGGAAGGTTTGTATGGTCG	58.738	50.000	0.00	0.00	0.00	4.79
1742	1960	4.254492	GACTCTGGAAGGTTTGTATGGTC	58.746	47.826	0.00	0.00	0.00	4.02
1743	1961	3.009143	GGACTCTGGAAGGTTTGTATGGT	59.991	47.826	0.00	0.00	0.00	3.55
1744	1962	3.009033	TGGACTCTGGAAGGTTTGTATGG	59.991	47.826	0.00	0.00	0.00	2.74
1745	1963	4.003648	GTGGACTCTGGAAGGTTTGTATG	58.996	47.826	0.00	0.00	0.00	2.39
1746	1964	3.650942	TGTGGACTCTGGAAGGTTTGTAT	59.349	43.478	0.00	0.00	0.00	2.29
1747	1965	3.042682	TGTGGACTCTGGAAGGTTTGTA	58.957	45.455	0.00	0.00	0.00	2.41
1748	1966	1.843851	TGTGGACTCTGGAAGGTTTGT	59.156	47.619	0.00	0.00	0.00	2.83
1749	1967	2.638480	TGTGGACTCTGGAAGGTTTG	57.362	50.000	0.00	0.00	0.00	2.93
1750	1968	2.711009	TGATGTGGACTCTGGAAGGTTT	59.289	45.455	0.00	0.00	0.00	3.27
1751	1969	2.039084	GTGATGTGGACTCTGGAAGGTT	59.961	50.000	0.00	0.00	0.00	3.50
1752	1970	1.625818	GTGATGTGGACTCTGGAAGGT	59.374	52.381	0.00	0.00	0.00	3.50
1753	1971	1.065854	GGTGATGTGGACTCTGGAAGG	60.066	57.143	0.00	0.00	0.00	3.46
1754	1972	1.065854	GGGTGATGTGGACTCTGGAAG	60.066	57.143	0.00	0.00	0.00	3.46
1755	1973	0.984230	GGGTGATGTGGACTCTGGAA	59.016	55.000	0.00	0.00	0.00	3.53
1756	1974	0.178906	TGGGTGATGTGGACTCTGGA	60.179	55.000	0.00	0.00	0.00	3.86
1757	1975	0.914644	ATGGGTGATGTGGACTCTGG	59.085	55.000	0.00	0.00	0.00	3.86
1758	1976	2.238144	AGAATGGGTGATGTGGACTCTG	59.762	50.000	0.00	0.00	0.00	3.35
1759	1977	2.503356	GAGAATGGGTGATGTGGACTCT	59.497	50.000	0.00	0.00	0.00	3.24
1760	1978	2.237143	TGAGAATGGGTGATGTGGACTC	59.763	50.000	0.00	0.00	0.00	3.36
1761	1979	2.269023	TGAGAATGGGTGATGTGGACT	58.731	47.619	0.00	0.00	0.00	3.85
1762	1980	2.749621	GTTGAGAATGGGTGATGTGGAC	59.250	50.000	0.00	0.00	0.00	4.02
1763	1981	2.374839	TGTTGAGAATGGGTGATGTGGA	59.625	45.455	0.00	0.00	0.00	4.02
1764	1982	2.794103	TGTTGAGAATGGGTGATGTGG	58.206	47.619	0.00	0.00	0.00	4.17
1765	1983	4.852134	TTTGTTGAGAATGGGTGATGTG	57.148	40.909	0.00	0.00	0.00	3.21
1766	1984	5.867903	TTTTTGTTGAGAATGGGTGATGT	57.132	34.783	0.00	0.00	0.00	3.06
1786	2004	0.678048	CTAGCAGCGGCCCTCTTTTT	60.678	55.000	4.82	0.00	42.56	1.94
1787	2005	1.078143	CTAGCAGCGGCCCTCTTTT	60.078	57.895	4.82	0.00	42.56	2.27
1788	2006	2.586792	CTAGCAGCGGCCCTCTTT	59.413	61.111	4.82	0.00	42.56	2.52
1789	2007	3.474570	CCTAGCAGCGGCCCTCTT	61.475	66.667	4.82	0.00	42.56	2.85
2044	2289	3.982316	CTGCAATGGAGCTCCGCCA	62.982	63.158	27.43	18.67	37.78	5.69
2149	2394	2.401583	TGTTGTATTGGAGCATCGCT	57.598	45.000	0.00	0.00	43.88	4.93

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.