Multiple sequence alignment - TraesCS4D01G280300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G280300 chr4D 100.000 4007 0 0 1 4007 451278420 451282426 0.000000e+00 7400.0
1 TraesCS4D01G280300 chr4A 92.925 3364 120 51 698 4007 15655327 15652028 0.000000e+00 4785.0
2 TraesCS4D01G280300 chr4A 86.667 300 35 4 224 520 15657289 15656992 1.070000e-85 327.0
3 TraesCS4D01G280300 chr4A 89.634 164 16 1 1 163 311662336 311662499 1.460000e-49 207.0
4 TraesCS4D01G280300 chr4A 94.118 34 2 0 1568 1601 602227562 602227595 7.000000e-03 52.8
5 TraesCS4D01G280300 chr4B 92.966 1706 50 30 689 2354 564866183 564867858 0.000000e+00 2422.0
6 TraesCS4D01G280300 chr4B 89.542 1377 68 27 2377 3733 564867851 564869171 0.000000e+00 1676.0
7 TraesCS4D01G280300 chr7A 75.314 717 107 39 1967 2676 61491044 61490391 3.050000e-71 279.0
8 TraesCS4D01G280300 chr7A 74.930 718 108 41 1967 2676 109228101 109227448 3.070000e-66 263.0
9 TraesCS4D01G280300 chr2A 92.683 164 11 1 1 163 118486409 118486246 6.690000e-58 235.0
10 TraesCS4D01G280300 chr2A 89.634 164 16 1 1 163 217354555 217354718 1.460000e-49 207.0
11 TraesCS4D01G280300 chr1B 91.411 163 13 1 2 163 346406489 346406327 5.210000e-54 222.0
12 TraesCS4D01G280300 chr1B 90.244 164 15 1 1 163 528134666 528134829 3.140000e-51 213.0
13 TraesCS4D01G280300 chr7B 90.798 163 14 1 1 162 289163589 289163751 2.430000e-52 217.0
14 TraesCS4D01G280300 chr3B 89.881 168 16 1 1 167 244390006 244389839 8.720000e-52 215.0
15 TraesCS4D01G280300 chr3B 78.866 194 40 1 1021 1213 212889142 212888949 3.250000e-26 130.0
16 TraesCS4D01G280300 chr7D 83.843 229 26 8 1 222 60707867 60708091 1.460000e-49 207.0
17 TraesCS4D01G280300 chr3D 89.634 164 16 1 1 163 16246659 16246496 1.460000e-49 207.0
18 TraesCS4D01G280300 chr5D 79.581 191 35 4 1026 1213 503669782 503669971 2.510000e-27 134.0
19 TraesCS4D01G280300 chr5A 79.581 191 35 4 1026 1213 631664332 631664521 2.510000e-27 134.0
20 TraesCS4D01G280300 chr5B 79.188 197 36 5 1021 1213 632152864 632153059 9.040000e-27 132.0
21 TraesCS4D01G280300 chr6A 94.872 39 2 0 1564 1602 154857616 154857578 1.200000e-05 62.1
22 TraesCS4D01G280300 chr2D 94.872 39 2 0 1564 1602 436703706 436703744 1.200000e-05 62.1
23 TraesCS4D01G280300 chr1A 94.872 39 2 0 1564 1602 475411144 475411106 1.200000e-05 62.1
24 TraesCS4D01G280300 chr2B 97.222 36 0 1 1568 1603 448132507 448132473 4.320000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G280300 chr4D 451278420 451282426 4006 False 7400 7400 100.000 1 4007 1 chr4D.!!$F1 4006
1 TraesCS4D01G280300 chr4A 15652028 15657289 5261 True 2556 4785 89.796 224 4007 2 chr4A.!!$R1 3783
2 TraesCS4D01G280300 chr4B 564866183 564869171 2988 False 2049 2422 91.254 689 3733 2 chr4B.!!$F1 3044
3 TraesCS4D01G280300 chr7A 61490391 61491044 653 True 279 279 75.314 1967 2676 1 chr7A.!!$R1 709
4 TraesCS4D01G280300 chr7A 109227448 109228101 653 True 263 263 74.930 1967 2676 1 chr7A.!!$R2 709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
582 585 0.038892 CACTGCCACATGAAACCAGC 60.039 55.0 0.0 0.0 0.0 4.85 F
1777 3391 0.035176 GGTGGTTACTGCCGTGGTAA 59.965 55.0 0.0 0.0 0.0 2.85 F
2812 4449 0.177604 CCTCTGTCACCATCCTCAGC 59.822 60.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2514 4151 1.072331 TCTGAAACCTGAGCCTTCACC 59.928 52.381 0.00 0.00 0.00 4.02 R
2839 4476 0.039472 TGCAGGCAGGCAAATAGGAA 59.961 50.000 1.11 0.00 41.65 3.36 R
3955 5637 1.338020 CTGGATTTATTTCCGCCTGGC 59.662 52.381 9.11 9.11 38.74 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.952482 CCTTTGGAGCCCTTTGGT 57.048 55.556 0.00 0.00 0.00 3.67
18 19 3.147826 CCTTTGGAGCCCTTTGGTT 57.852 52.632 0.00 0.00 0.00 3.67
19 20 1.423584 CCTTTGGAGCCCTTTGGTTT 58.576 50.000 0.00 0.00 0.00 3.27
20 21 1.070601 CCTTTGGAGCCCTTTGGTTTG 59.929 52.381 0.00 0.00 0.00 2.93
21 22 1.762370 CTTTGGAGCCCTTTGGTTTGT 59.238 47.619 0.00 0.00 0.00 2.83
22 23 2.757894 TTGGAGCCCTTTGGTTTGTA 57.242 45.000 0.00 0.00 0.00 2.41
23 24 2.286365 TGGAGCCCTTTGGTTTGTAG 57.714 50.000 0.00 0.00 0.00 2.74
24 25 1.203001 TGGAGCCCTTTGGTTTGTAGG 60.203 52.381 0.00 0.00 0.00 3.18
25 26 1.074889 GGAGCCCTTTGGTTTGTAGGA 59.925 52.381 0.00 0.00 0.00 2.94
26 27 2.490168 GGAGCCCTTTGGTTTGTAGGAA 60.490 50.000 0.00 0.00 0.00 3.36
27 28 3.431415 GAGCCCTTTGGTTTGTAGGAAT 58.569 45.455 0.00 0.00 0.00 3.01
28 29 4.569015 GGAGCCCTTTGGTTTGTAGGAATA 60.569 45.833 0.00 0.00 0.00 1.75
29 30 4.600062 AGCCCTTTGGTTTGTAGGAATAG 58.400 43.478 0.00 0.00 0.00 1.73
30 31 4.291249 AGCCCTTTGGTTTGTAGGAATAGA 59.709 41.667 0.00 0.00 0.00 1.98
31 32 5.014202 GCCCTTTGGTTTGTAGGAATAGAA 58.986 41.667 0.00 0.00 0.00 2.10
32 33 5.656859 GCCCTTTGGTTTGTAGGAATAGAAT 59.343 40.000 0.00 0.00 0.00 2.40
33 34 6.183360 GCCCTTTGGTTTGTAGGAATAGAATC 60.183 42.308 0.00 0.00 0.00 2.52
34 35 6.321435 CCCTTTGGTTTGTAGGAATAGAATCC 59.679 42.308 0.00 0.00 39.96 3.01
66 67 6.891306 TGGAGGAATTCTTTCTATCCTTCA 57.109 37.500 5.23 0.00 43.73 3.02
67 68 6.653989 TGGAGGAATTCTTTCTATCCTTCAC 58.346 40.000 5.23 0.00 41.61 3.18
68 69 6.215431 TGGAGGAATTCTTTCTATCCTTCACA 59.785 38.462 5.23 0.00 41.61 3.58
69 70 7.092264 TGGAGGAATTCTTTCTATCCTTCACAT 60.092 37.037 5.23 0.00 41.61 3.21
70 71 7.777440 GGAGGAATTCTTTCTATCCTTCACATT 59.223 37.037 5.23 0.00 42.28 2.71
71 72 9.183368 GAGGAATTCTTTCTATCCTTCACATTT 57.817 33.333 5.23 0.00 42.28 2.32
72 73 9.183368 AGGAATTCTTTCTATCCTTCACATTTC 57.817 33.333 5.23 0.00 39.23 2.17
73 74 8.960591 GGAATTCTTTCTATCCTTCACATTTCA 58.039 33.333 5.23 0.00 32.16 2.69
134 135 7.516198 AATCCTATGATGTGAACCAAATAGC 57.484 36.000 0.00 0.00 0.00 2.97
135 136 6.000246 TCCTATGATGTGAACCAAATAGCA 58.000 37.500 0.00 0.00 0.00 3.49
136 137 6.604171 TCCTATGATGTGAACCAAATAGCAT 58.396 36.000 0.00 0.00 0.00 3.79
137 138 6.712095 TCCTATGATGTGAACCAAATAGCATC 59.288 38.462 0.00 0.00 34.88 3.91
138 139 6.713903 CCTATGATGTGAACCAAATAGCATCT 59.286 38.462 0.00 0.00 35.22 2.90
139 140 6.630444 ATGATGTGAACCAAATAGCATCTC 57.370 37.500 0.00 0.00 35.22 2.75
140 141 4.883585 TGATGTGAACCAAATAGCATCTCC 59.116 41.667 0.00 0.00 35.22 3.71
141 142 4.574674 TGTGAACCAAATAGCATCTCCT 57.425 40.909 0.00 0.00 0.00 3.69
142 143 4.922206 TGTGAACCAAATAGCATCTCCTT 58.078 39.130 0.00 0.00 0.00 3.36
143 144 4.943705 TGTGAACCAAATAGCATCTCCTTC 59.056 41.667 0.00 0.00 0.00 3.46
144 145 4.336713 GTGAACCAAATAGCATCTCCTTCC 59.663 45.833 0.00 0.00 0.00 3.46
145 146 3.584733 ACCAAATAGCATCTCCTTCCC 57.415 47.619 0.00 0.00 0.00 3.97
146 147 2.852449 ACCAAATAGCATCTCCTTCCCA 59.148 45.455 0.00 0.00 0.00 4.37
147 148 3.464833 ACCAAATAGCATCTCCTTCCCAT 59.535 43.478 0.00 0.00 0.00 4.00
148 149 4.078980 ACCAAATAGCATCTCCTTCCCATT 60.079 41.667 0.00 0.00 0.00 3.16
149 150 4.522022 CCAAATAGCATCTCCTTCCCATTC 59.478 45.833 0.00 0.00 0.00 2.67
150 151 4.379302 AATAGCATCTCCTTCCCATTCC 57.621 45.455 0.00 0.00 0.00 3.01
151 152 1.904440 AGCATCTCCTTCCCATTCCT 58.096 50.000 0.00 0.00 0.00 3.36
152 153 3.066208 AGCATCTCCTTCCCATTCCTA 57.934 47.619 0.00 0.00 0.00 2.94
153 154 3.606972 AGCATCTCCTTCCCATTCCTAT 58.393 45.455 0.00 0.00 0.00 2.57
154 155 3.986134 AGCATCTCCTTCCCATTCCTATT 59.014 43.478 0.00 0.00 0.00 1.73
155 156 4.042684 AGCATCTCCTTCCCATTCCTATTC 59.957 45.833 0.00 0.00 0.00 1.75
156 157 4.202503 GCATCTCCTTCCCATTCCTATTCA 60.203 45.833 0.00 0.00 0.00 2.57
157 158 5.516238 GCATCTCCTTCCCATTCCTATTCAT 60.516 44.000 0.00 0.00 0.00 2.57
158 159 6.296662 GCATCTCCTTCCCATTCCTATTCATA 60.297 42.308 0.00 0.00 0.00 2.15
159 160 6.942163 TCTCCTTCCCATTCCTATTCATAG 57.058 41.667 0.00 0.00 0.00 2.23
178 179 8.648557 TTCATAGGATCTCATTTTCTACAACG 57.351 34.615 0.00 0.00 0.00 4.10
179 180 7.782049 TCATAGGATCTCATTTTCTACAACGT 58.218 34.615 0.00 0.00 0.00 3.99
180 181 8.258007 TCATAGGATCTCATTTTCTACAACGTT 58.742 33.333 0.00 0.00 0.00 3.99
181 182 8.883731 CATAGGATCTCATTTTCTACAACGTTT 58.116 33.333 0.00 0.00 0.00 3.60
182 183 7.365840 AGGATCTCATTTTCTACAACGTTTC 57.634 36.000 0.00 0.00 0.00 2.78
183 184 7.162082 AGGATCTCATTTTCTACAACGTTTCT 58.838 34.615 0.00 0.00 0.00 2.52
184 185 8.311836 AGGATCTCATTTTCTACAACGTTTCTA 58.688 33.333 0.00 0.00 0.00 2.10
185 186 9.099454 GGATCTCATTTTCTACAACGTTTCTAT 57.901 33.333 0.00 0.00 0.00 1.98
188 189 9.706691 TCTCATTTTCTACAACGTTTCTATTCT 57.293 29.630 0.00 0.00 0.00 2.40
211 212 8.937634 TCTTATGATTTTCCTACCTTACGAAC 57.062 34.615 0.00 0.00 0.00 3.95
212 213 7.983484 TCTTATGATTTTCCTACCTTACGAACC 59.017 37.037 0.00 0.00 0.00 3.62
213 214 5.486735 TGATTTTCCTACCTTACGAACCA 57.513 39.130 0.00 0.00 0.00 3.67
214 215 5.867330 TGATTTTCCTACCTTACGAACCAA 58.133 37.500 0.00 0.00 0.00 3.67
215 216 6.297582 TGATTTTCCTACCTTACGAACCAAA 58.702 36.000 0.00 0.00 0.00 3.28
216 217 6.205270 TGATTTTCCTACCTTACGAACCAAAC 59.795 38.462 0.00 0.00 0.00 2.93
217 218 3.302365 TCCTACCTTACGAACCAAACG 57.698 47.619 0.00 0.00 0.00 3.60
218 219 2.890311 TCCTACCTTACGAACCAAACGA 59.110 45.455 0.00 0.00 34.70 3.85
219 220 3.057315 TCCTACCTTACGAACCAAACGAG 60.057 47.826 0.00 0.00 34.70 4.18
220 221 2.159327 ACCTTACGAACCAAACGAGG 57.841 50.000 0.00 0.00 33.17 4.63
221 222 0.794473 CCTTACGAACCAAACGAGGC 59.206 55.000 0.00 0.00 34.70 4.70
222 223 0.437295 CTTACGAACCAAACGAGGCG 59.563 55.000 0.00 0.00 34.70 5.52
223 224 0.249405 TTACGAACCAAACGAGGCGT 60.249 50.000 0.00 0.00 43.97 5.68
224 225 0.595588 TACGAACCAAACGAGGCGTA 59.404 50.000 0.00 0.00 39.99 4.42
225 226 0.249405 ACGAACCAAACGAGGCGTAA 60.249 50.000 0.00 0.00 39.99 3.18
226 227 0.860533 CGAACCAAACGAGGCGTAAA 59.139 50.000 0.00 0.00 39.99 2.01
227 228 1.136446 CGAACCAAACGAGGCGTAAAG 60.136 52.381 0.00 0.00 39.99 1.85
228 229 2.137523 GAACCAAACGAGGCGTAAAGA 58.862 47.619 0.00 0.00 39.99 2.52
229 230 2.467566 ACCAAACGAGGCGTAAAGAT 57.532 45.000 0.00 0.00 39.99 2.40
234 235 2.754946 ACGAGGCGTAAAGATTTCCA 57.245 45.000 0.00 0.00 38.73 3.53
237 238 3.118738 ACGAGGCGTAAAGATTTCCATCT 60.119 43.478 0.00 0.00 38.88 2.90
241 242 8.791216 ACGAGGCGTAAAGATTTCCATCTTAAC 61.791 40.741 0.00 0.00 42.11 2.01
248 249 3.463704 AGATTTCCATCTTAACCCCCTCC 59.536 47.826 0.00 0.00 36.18 4.30
252 253 1.141185 CATCTTAACCCCCTCCCTCC 58.859 60.000 0.00 0.00 0.00 4.30
264 265 1.407989 CCTCCCTCCAGCATTTGTCTC 60.408 57.143 0.00 0.00 0.00 3.36
270 271 1.881973 TCCAGCATTTGTCTCTTGTGC 59.118 47.619 0.00 0.00 36.11 4.57
271 272 1.884579 CCAGCATTTGTCTCTTGTGCT 59.115 47.619 0.00 0.00 46.20 4.40
273 274 2.095364 CAGCATTTGTCTCTTGTGCTCC 60.095 50.000 0.00 0.00 43.68 4.70
284 285 2.030893 TCTTGTGCTCCGCTTTTCATTG 60.031 45.455 0.00 0.00 0.00 2.82
329 330 9.601217 TTTTAAGCTTGCCTCTTAGAACTATAG 57.399 33.333 9.86 0.00 0.00 1.31
331 332 3.984633 GCTTGCCTCTTAGAACTATAGCG 59.015 47.826 0.00 0.00 0.00 4.26
345 346 5.453567 ACTATAGCGTTGCTGATATCACA 57.546 39.130 0.00 2.73 40.10 3.58
355 356 6.238566 CGTTGCTGATATCACATCATTTCCTT 60.239 38.462 0.00 0.00 0.00 3.36
357 358 8.623903 GTTGCTGATATCACATCATTTCCTTTA 58.376 33.333 0.00 0.00 0.00 1.85
384 385 9.272901 CATTATTAATGTAACCACGACAAACTG 57.727 33.333 8.04 0.00 34.18 3.16
441 442 7.095355 ACCTATAACAAATTGTTCACGACACTC 60.095 37.037 15.22 0.00 40.22 3.51
442 443 4.955925 AACAAATTGTTCACGACACTCA 57.044 36.364 5.41 0.00 35.27 3.41
449 452 4.577834 TGTTCACGACACTCAATGAGTA 57.422 40.909 16.28 0.00 41.37 2.59
476 479 2.959421 AGGAGAAGAGAGGGTTCCAT 57.041 50.000 0.00 0.00 0.00 3.41
477 480 2.476199 AGGAGAAGAGAGGGTTCCATG 58.524 52.381 0.00 0.00 0.00 3.66
485 488 1.106285 GAGGGTTCCATGACCATTGC 58.894 55.000 5.97 0.00 41.65 3.56
491 494 3.023119 GTTCCATGACCATTGCCACATA 58.977 45.455 0.00 0.00 0.00 2.29
496 499 4.322574 CCATGACCATTGCCACATAAAACA 60.323 41.667 0.00 0.00 0.00 2.83
512 515 9.599322 CACATAAAACAAGAGACAACTATGAAC 57.401 33.333 0.00 0.00 0.00 3.18
517 520 5.057149 ACAAGAGACAACTATGAACACCAC 58.943 41.667 0.00 0.00 0.00 4.16
518 521 4.955811 AGAGACAACTATGAACACCACA 57.044 40.909 0.00 0.00 0.00 4.17
519 522 5.489792 AGAGACAACTATGAACACCACAT 57.510 39.130 0.00 0.00 0.00 3.21
520 523 6.605471 AGAGACAACTATGAACACCACATA 57.395 37.500 0.00 0.00 0.00 2.29
521 524 6.398918 AGAGACAACTATGAACACCACATAC 58.601 40.000 0.00 0.00 0.00 2.39
522 525 6.211584 AGAGACAACTATGAACACCACATACT 59.788 38.462 0.00 0.00 0.00 2.12
523 526 6.398918 AGACAACTATGAACACCACATACTC 58.601 40.000 0.00 0.00 0.00 2.59
524 527 6.014584 AGACAACTATGAACACCACATACTCA 60.015 38.462 0.00 0.00 0.00 3.41
525 528 6.530120 ACAACTATGAACACCACATACTCAA 58.470 36.000 0.00 0.00 0.00 3.02
526 529 7.168219 ACAACTATGAACACCACATACTCAAT 58.832 34.615 0.00 0.00 0.00 2.57
527 530 7.119699 ACAACTATGAACACCACATACTCAATG 59.880 37.037 0.00 0.00 41.74 2.82
528 531 6.946340 ACTATGAACACCACATACTCAATGA 58.054 36.000 0.00 0.00 39.07 2.57
529 532 7.044181 ACTATGAACACCACATACTCAATGAG 58.956 38.462 8.98 8.98 39.07 2.90
530 533 5.227569 TGAACACCACATACTCAATGAGT 57.772 39.130 20.48 20.48 45.54 3.41
531 534 4.996758 TGAACACCACATACTCAATGAGTG 59.003 41.667 24.74 12.21 43.30 3.51
532 535 4.890158 ACACCACATACTCAATGAGTGA 57.110 40.909 24.74 10.05 43.30 3.41
533 536 5.426689 ACACCACATACTCAATGAGTGAT 57.573 39.130 24.74 11.74 43.30 3.06
534 537 5.809001 ACACCACATACTCAATGAGTGATT 58.191 37.500 24.74 7.71 43.30 2.57
535 538 6.240894 ACACCACATACTCAATGAGTGATTT 58.759 36.000 24.74 5.31 43.30 2.17
536 539 6.716628 ACACCACATACTCAATGAGTGATTTT 59.283 34.615 24.74 0.01 43.30 1.82
537 540 7.025365 CACCACATACTCAATGAGTGATTTTG 58.975 38.462 24.74 15.45 43.30 2.44
538 541 6.942005 ACCACATACTCAATGAGTGATTTTGA 59.058 34.615 24.74 4.21 43.30 2.69
539 542 7.448161 ACCACATACTCAATGAGTGATTTTGAA 59.552 33.333 24.74 3.45 43.30 2.69
540 543 7.966753 CCACATACTCAATGAGTGATTTTGAAG 59.033 37.037 24.74 3.71 43.30 3.02
541 544 7.966753 CACATACTCAATGAGTGATTTTGAAGG 59.033 37.037 24.74 7.33 43.30 3.46
542 545 7.884877 ACATACTCAATGAGTGATTTTGAAGGA 59.115 33.333 24.74 1.43 43.30 3.36
543 546 6.814506 ACTCAATGAGTGATTTTGAAGGAG 57.185 37.500 15.96 0.00 41.76 3.69
544 547 6.537355 ACTCAATGAGTGATTTTGAAGGAGA 58.463 36.000 15.96 0.00 41.76 3.71
545 548 7.000472 ACTCAATGAGTGATTTTGAAGGAGAA 59.000 34.615 15.96 0.00 41.76 2.87
546 549 7.174599 ACTCAATGAGTGATTTTGAAGGAGAAG 59.825 37.037 15.96 0.00 41.76 2.85
547 550 7.226441 TCAATGAGTGATTTTGAAGGAGAAGA 58.774 34.615 0.00 0.00 0.00 2.87
548 551 7.389884 TCAATGAGTGATTTTGAAGGAGAAGAG 59.610 37.037 0.00 0.00 0.00 2.85
549 552 6.425210 TGAGTGATTTTGAAGGAGAAGAGA 57.575 37.500 0.00 0.00 0.00 3.10
550 553 6.830912 TGAGTGATTTTGAAGGAGAAGAGAA 58.169 36.000 0.00 0.00 0.00 2.87
551 554 6.933521 TGAGTGATTTTGAAGGAGAAGAGAAG 59.066 38.462 0.00 0.00 0.00 2.85
552 555 6.237154 AGTGATTTTGAAGGAGAAGAGAAGG 58.763 40.000 0.00 0.00 0.00 3.46
553 556 6.043706 AGTGATTTTGAAGGAGAAGAGAAGGA 59.956 38.462 0.00 0.00 0.00 3.36
554 557 6.883756 GTGATTTTGAAGGAGAAGAGAAGGAT 59.116 38.462 0.00 0.00 0.00 3.24
555 558 7.392953 GTGATTTTGAAGGAGAAGAGAAGGATT 59.607 37.037 0.00 0.00 0.00 3.01
568 571 1.936547 GAAGGATTCCACGATCACTGC 59.063 52.381 5.29 0.00 39.83 4.40
569 572 0.179000 AGGATTCCACGATCACTGCC 59.821 55.000 5.29 0.00 0.00 4.85
570 573 0.107703 GGATTCCACGATCACTGCCA 60.108 55.000 0.00 0.00 0.00 4.92
571 574 1.009829 GATTCCACGATCACTGCCAC 58.990 55.000 0.00 0.00 0.00 5.01
572 575 0.324614 ATTCCACGATCACTGCCACA 59.675 50.000 0.00 0.00 0.00 4.17
573 576 0.324614 TTCCACGATCACTGCCACAT 59.675 50.000 0.00 0.00 0.00 3.21
574 577 0.391528 TCCACGATCACTGCCACATG 60.392 55.000 0.00 0.00 0.00 3.21
575 578 0.391528 CCACGATCACTGCCACATGA 60.392 55.000 0.00 0.00 0.00 3.07
576 579 1.441738 CACGATCACTGCCACATGAA 58.558 50.000 0.00 0.00 0.00 2.57
577 580 1.805943 CACGATCACTGCCACATGAAA 59.194 47.619 0.00 0.00 0.00 2.69
578 581 1.806542 ACGATCACTGCCACATGAAAC 59.193 47.619 0.00 0.00 0.00 2.78
579 582 1.131126 CGATCACTGCCACATGAAACC 59.869 52.381 0.00 0.00 0.00 3.27
580 583 2.161855 GATCACTGCCACATGAAACCA 58.838 47.619 0.00 0.00 0.00 3.67
581 584 1.608055 TCACTGCCACATGAAACCAG 58.392 50.000 0.00 2.89 0.00 4.00
582 585 0.038892 CACTGCCACATGAAACCAGC 60.039 55.000 0.00 0.00 0.00 4.85
583 586 1.210931 CTGCCACATGAAACCAGCG 59.789 57.895 0.00 0.00 0.00 5.18
584 587 1.228094 TGCCACATGAAACCAGCGA 60.228 52.632 0.00 0.00 0.00 4.93
585 588 1.210155 GCCACATGAAACCAGCGAC 59.790 57.895 0.00 0.00 0.00 5.19
586 589 1.875963 CCACATGAAACCAGCGACC 59.124 57.895 0.00 0.00 0.00 4.79
587 590 0.888736 CCACATGAAACCAGCGACCA 60.889 55.000 0.00 0.00 0.00 4.02
588 591 0.238289 CACATGAAACCAGCGACCAC 59.762 55.000 0.00 0.00 0.00 4.16
589 592 0.108585 ACATGAAACCAGCGACCACT 59.891 50.000 0.00 0.00 0.00 4.00
590 593 1.346395 ACATGAAACCAGCGACCACTA 59.654 47.619 0.00 0.00 0.00 2.74
591 594 2.027192 ACATGAAACCAGCGACCACTAT 60.027 45.455 0.00 0.00 0.00 2.12
592 595 2.093306 TGAAACCAGCGACCACTATG 57.907 50.000 0.00 0.00 0.00 2.23
593 596 1.621317 TGAAACCAGCGACCACTATGA 59.379 47.619 0.00 0.00 0.00 2.15
594 597 2.037902 TGAAACCAGCGACCACTATGAA 59.962 45.455 0.00 0.00 0.00 2.57
595 598 2.386661 AACCAGCGACCACTATGAAG 57.613 50.000 0.00 0.00 0.00 3.02
596 599 1.557099 ACCAGCGACCACTATGAAGA 58.443 50.000 0.00 0.00 0.00 2.87
597 600 1.204941 ACCAGCGACCACTATGAAGAC 59.795 52.381 0.00 0.00 0.00 3.01
598 601 1.471676 CCAGCGACCACTATGAAGACC 60.472 57.143 0.00 0.00 0.00 3.85
599 602 1.204704 CAGCGACCACTATGAAGACCA 59.795 52.381 0.00 0.00 0.00 4.02
600 603 1.204941 AGCGACCACTATGAAGACCAC 59.795 52.381 0.00 0.00 0.00 4.16
601 604 1.067142 GCGACCACTATGAAGACCACA 60.067 52.381 0.00 0.00 0.00 4.17
632 635 7.305474 ACAAAATCGTCCAAGTTGTTCATATC 58.695 34.615 1.45 0.00 0.00 1.63
635 638 5.006153 TCGTCCAAGTTGTTCATATCGAT 57.994 39.130 2.16 2.16 0.00 3.59
636 639 4.803613 TCGTCCAAGTTGTTCATATCGATG 59.196 41.667 8.54 0.00 0.00 3.84
646 649 0.798776 CATATCGATGAAAGCCGGGC 59.201 55.000 12.11 12.11 34.73 6.13
658 661 3.056313 GCCGGGCTCAAAGTCATGC 62.056 63.158 12.87 0.00 0.00 4.06
660 663 1.651240 CCGGGCTCAAAGTCATGCTG 61.651 60.000 0.00 0.00 0.00 4.41
661 664 1.651240 CGGGCTCAAAGTCATGCTGG 61.651 60.000 0.00 0.00 0.00 4.85
662 665 1.318158 GGGCTCAAAGTCATGCTGGG 61.318 60.000 0.00 0.00 0.00 4.45
663 666 1.318158 GGCTCAAAGTCATGCTGGGG 61.318 60.000 0.00 0.00 0.00 4.96
664 667 1.318158 GCTCAAAGTCATGCTGGGGG 61.318 60.000 0.00 0.00 0.00 5.40
696 2271 8.498054 TCAACTATATCAAAAAGGAAGAGCTG 57.502 34.615 0.00 0.00 0.00 4.24
703 2278 7.823745 ATCAAAAAGGAAGAGCTGAAGTAAA 57.176 32.000 0.00 0.00 0.00 2.01
769 2344 1.375853 TTGCTGCGGATGTGTATGGC 61.376 55.000 0.00 0.00 0.00 4.40
816 2398 8.730680 TGCTTTGTAAAATAAAACCAGCAAAAA 58.269 25.926 0.00 0.00 31.52 1.94
820 2402 8.547967 TGTAAAATAAAACCAGCAAAAACACA 57.452 26.923 0.00 0.00 0.00 3.72
823 2405 7.440523 AAATAAAACCAGCAAAAACACAACA 57.559 28.000 0.00 0.00 0.00 3.33
824 2406 7.440523 AATAAAACCAGCAAAAACACAACAA 57.559 28.000 0.00 0.00 0.00 2.83
825 2407 5.355467 AAAACCAGCAAAAACACAACAAG 57.645 34.783 0.00 0.00 0.00 3.16
826 2408 3.951775 ACCAGCAAAAACACAACAAGA 57.048 38.095 0.00 0.00 0.00 3.02
827 2409 4.264460 ACCAGCAAAAACACAACAAGAA 57.736 36.364 0.00 0.00 0.00 2.52
828 2410 4.636249 ACCAGCAAAAACACAACAAGAAA 58.364 34.783 0.00 0.00 0.00 2.52
829 2411 5.059833 ACCAGCAAAAACACAACAAGAAAA 58.940 33.333 0.00 0.00 0.00 2.29
830 2412 5.529060 ACCAGCAAAAACACAACAAGAAAAA 59.471 32.000 0.00 0.00 0.00 1.94
856 2438 3.939066 TCTAACTTTAGCTTCTGTGGCC 58.061 45.455 0.00 0.00 0.00 5.36
1359 2966 5.611796 TGTTACATGTCTTCAGCAATGTC 57.388 39.130 0.00 0.00 0.00 3.06
1397 3010 2.530460 TTGGGGGTGGAGAATCAATG 57.470 50.000 0.00 0.00 36.25 2.82
1440 3053 3.577805 ACTAGGTGAACTGGCTTTGTT 57.422 42.857 0.00 0.00 0.00 2.83
1453 3066 4.517285 TGGCTTTGTTAAGATCTAGGCAG 58.483 43.478 11.90 0.00 33.92 4.85
1494 3107 3.683365 AATTTGGAACCATCAAGGCAC 57.317 42.857 0.00 0.00 43.14 5.01
1608 3221 1.749634 ACGGAGGGAGTACTTTGATCG 59.250 52.381 0.00 2.22 0.00 3.69
1705 3318 6.038356 CCTTGTCTGATTTGATAAATGTGGC 58.962 40.000 0.00 0.00 0.00 5.01
1706 3319 6.350361 CCTTGTCTGATTTGATAAATGTGGCA 60.350 38.462 0.00 0.00 0.00 4.92
1774 3388 1.546589 TAGGGTGGTTACTGCCGTGG 61.547 60.000 0.00 0.00 0.00 4.94
1775 3389 2.428622 GGTGGTTACTGCCGTGGT 59.571 61.111 0.00 0.00 0.00 4.16
1776 3390 1.672898 GGTGGTTACTGCCGTGGTA 59.327 57.895 0.00 0.00 0.00 3.25
1777 3391 0.035176 GGTGGTTACTGCCGTGGTAA 59.965 55.000 0.00 0.00 0.00 2.85
1919 3541 8.514594 TCACCAAATTCTCATACATCAGTTTTC 58.485 33.333 0.00 0.00 0.00 2.29
1939 3561 3.905968 TCCAGAATGACGTGTATCCCTA 58.094 45.455 0.00 0.00 39.69 3.53
1997 3620 4.154737 TGTTGATAACTCACTGCATTCTGC 59.845 41.667 0.00 0.00 45.29 4.26
2002 3625 3.911661 ACTCACTGCATTCTGCTTTTC 57.088 42.857 0.34 0.00 45.31 2.29
2020 3644 5.107875 GCTTTTCGGCTTTGTTGTTCAATAG 60.108 40.000 0.00 0.00 35.84 1.73
2221 3846 0.319555 GCGGAGGAAAAGCCAAAACC 60.320 55.000 0.00 0.00 40.02 3.27
2321 3946 7.543868 AGCAAGTCTCGTCTTATCATATAATGC 59.456 37.037 0.00 0.00 0.00 3.56
2326 3952 9.077674 GTCTCGTCTTATCATATAATGCGAATT 57.922 33.333 0.00 0.00 0.00 2.17
2357 3983 5.530915 CCGAATCATTACAATACATGGGTGT 59.469 40.000 0.00 0.32 42.39 4.16
2574 4211 2.218530 GCAAAACATCGAAAAGGTGCAC 59.781 45.455 8.80 8.80 33.17 4.57
2584 4221 3.060895 CGAAAAGGTGCACGTCTATTCTC 59.939 47.826 13.21 3.07 0.00 2.87
2591 4228 3.994392 GTGCACGTCTATTCTCCTTTCAA 59.006 43.478 0.00 0.00 0.00 2.69
2608 4245 5.996513 CCTTTCAATCTGATAGTGATCCCTG 59.003 44.000 0.00 0.00 31.10 4.45
2609 4246 6.409005 CCTTTCAATCTGATAGTGATCCCTGT 60.409 42.308 0.00 0.00 31.10 4.00
2610 4247 5.798125 TCAATCTGATAGTGATCCCTGTC 57.202 43.478 0.00 0.00 0.00 3.51
2611 4248 4.279420 TCAATCTGATAGTGATCCCTGTCG 59.721 45.833 0.00 0.00 0.00 4.35
2612 4249 2.587522 TCTGATAGTGATCCCTGTCGG 58.412 52.381 4.67 4.67 32.05 4.79
2671 4308 1.989706 TTCCTTGCAACCTGTAACCC 58.010 50.000 0.00 0.00 0.00 4.11
2676 4313 0.259065 TGCAACCTGTAACCCAACCA 59.741 50.000 0.00 0.00 0.00 3.67
2677 4314 0.671796 GCAACCTGTAACCCAACCAC 59.328 55.000 0.00 0.00 0.00 4.16
2678 4315 1.752788 GCAACCTGTAACCCAACCACT 60.753 52.381 0.00 0.00 0.00 4.00
2679 4316 1.953686 CAACCTGTAACCCAACCACTG 59.046 52.381 0.00 0.00 0.00 3.66
2761 4398 4.152647 TCTCCGCTCACAGGTATCATATT 58.847 43.478 0.00 0.00 0.00 1.28
2769 4406 6.683861 GCTCACAGGTATCATATTCTCACACA 60.684 42.308 0.00 0.00 0.00 3.72
2774 4411 4.745125 GGTATCATATTCTCACACACACCG 59.255 45.833 0.00 0.00 0.00 4.94
2790 4427 1.658596 CACCGCGATTCGATCTTTTCA 59.341 47.619 8.23 0.00 41.67 2.69
2810 4447 2.325661 TTCCTCTGTCACCATCCTCA 57.674 50.000 0.00 0.00 0.00 3.86
2812 4449 0.177604 CCTCTGTCACCATCCTCAGC 59.822 60.000 0.00 0.00 0.00 4.26
2825 4462 4.526770 TCAGCGCATGAGACATGG 57.473 55.556 11.47 5.28 32.77 3.66
2826 4463 1.153309 TCAGCGCATGAGACATGGG 60.153 57.895 11.47 19.40 32.77 4.00
2827 4464 2.184830 CAGCGCATGAGACATGGGG 61.185 63.158 22.95 9.55 33.28 4.96
2828 4465 2.190313 GCGCATGAGACATGGGGA 59.810 61.111 22.95 0.00 33.28 4.81
2829 4466 2.182842 GCGCATGAGACATGGGGAC 61.183 63.158 22.95 9.55 33.28 4.46
2842 4479 1.221021 GGGGACATCGACCTGTTCC 59.779 63.158 7.84 7.84 43.20 3.62
3318 4957 5.337571 CCCAAGGCTCGCAATATATAAGAGA 60.338 44.000 13.14 4.52 0.00 3.10
3319 4958 5.809562 CCAAGGCTCGCAATATATAAGAGAG 59.190 44.000 13.14 12.50 33.19 3.20
3408 5051 3.132111 TGCTGCAATTCCGTACAGAGATA 59.868 43.478 0.00 0.00 31.67 1.98
3411 5054 4.631131 TGCAATTCCGTACAGAGATATGG 58.369 43.478 0.00 0.00 33.10 2.74
3446 5090 3.244526 TGCTTCTGTGTTCATGGCTCTTA 60.245 43.478 0.00 0.00 0.00 2.10
3537 5190 3.007940 TCCTTGGTCCAACATACACTGAG 59.992 47.826 0.00 0.00 0.00 3.35
3582 5235 0.619255 TTCCCCGCAATCCTAGGTCA 60.619 55.000 9.08 0.00 0.00 4.02
3594 5247 3.589641 TCCTAGGTCAACACCACCTTTA 58.410 45.455 9.08 0.00 46.68 1.85
3607 5260 2.076863 CACCTTTAGTGCCTGTGTAGC 58.923 52.381 0.00 0.00 40.28 3.58
3667 5320 4.497473 TCAACGGTAATTCAAAAGGCAG 57.503 40.909 0.00 0.00 0.00 4.85
3746 5427 8.704234 GTGCTCTACATATCTTTACAGTTATGC 58.296 37.037 6.81 0.00 36.63 3.14
3873 5554 0.523966 TAAATGTTTTCAGGCGCCCG 59.476 50.000 26.15 14.77 0.00 6.13
3897 5579 7.148738 CCGAGAGCACATATATGTATTTGTGAC 60.149 40.741 17.86 14.82 43.65 3.67
3955 5637 0.324645 AGGGCAAAGCTATGGGTTGG 60.325 55.000 0.00 0.00 33.11 3.77
3958 5640 1.257055 GCAAAGCTATGGGTTGGCCA 61.257 55.000 9.09 0.00 42.27 5.36
3962 5644 2.516930 CTATGGGTTGGCCAGGCG 60.517 66.667 5.11 0.00 36.17 5.52
3975 5657 1.338020 GCCAGGCGGAAATAAATCCAG 59.662 52.381 0.00 0.00 39.61 3.86
3991 5673 5.878406 AATCCAGATCGTCCAATTAGACT 57.122 39.130 2.54 0.00 34.46 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.070601 CAAACCAAAGGGCTCCAAAGG 59.929 52.381 0.00 0.00 37.90 3.11
1 2 1.762370 ACAAACCAAAGGGCTCCAAAG 59.238 47.619 0.00 0.00 37.90 2.77
2 3 1.872773 ACAAACCAAAGGGCTCCAAA 58.127 45.000 0.00 0.00 37.90 3.28
3 4 2.593026 CTACAAACCAAAGGGCTCCAA 58.407 47.619 0.00 0.00 37.90 3.53
4 5 1.203001 CCTACAAACCAAAGGGCTCCA 60.203 52.381 0.00 0.00 37.90 3.86
5 6 1.074889 TCCTACAAACCAAAGGGCTCC 59.925 52.381 0.00 0.00 37.90 4.70
6 7 2.579410 TCCTACAAACCAAAGGGCTC 57.421 50.000 0.00 0.00 37.90 4.70
7 8 3.542969 ATTCCTACAAACCAAAGGGCT 57.457 42.857 0.00 0.00 37.90 5.19
8 9 4.595986 TCTATTCCTACAAACCAAAGGGC 58.404 43.478 0.00 0.00 37.90 5.19
9 10 6.321435 GGATTCTATTCCTACAAACCAAAGGG 59.679 42.308 0.00 0.00 34.84 3.95
10 11 7.119387 AGGATTCTATTCCTACAAACCAAAGG 58.881 38.462 0.00 0.00 44.50 3.11
39 40 7.566658 AGGATAGAAAGAATTCCTCCATAGG 57.433 40.000 0.65 0.00 45.21 2.57
40 41 8.654997 TGAAGGATAGAAAGAATTCCTCCATAG 58.345 37.037 0.65 0.00 36.12 2.23
41 42 8.432805 GTGAAGGATAGAAAGAATTCCTCCATA 58.567 37.037 0.65 0.00 36.12 2.74
42 43 7.092264 TGTGAAGGATAGAAAGAATTCCTCCAT 60.092 37.037 0.65 0.00 36.12 3.41
43 44 6.215431 TGTGAAGGATAGAAAGAATTCCTCCA 59.785 38.462 0.65 0.00 36.12 3.86
44 45 6.653989 TGTGAAGGATAGAAAGAATTCCTCC 58.346 40.000 0.65 0.00 36.12 4.30
45 46 8.744568 AATGTGAAGGATAGAAAGAATTCCTC 57.255 34.615 0.65 0.00 36.12 3.71
46 47 9.183368 GAAATGTGAAGGATAGAAAGAATTCCT 57.817 33.333 0.65 0.00 36.12 3.36
47 48 8.960591 TGAAATGTGAAGGATAGAAAGAATTCC 58.039 33.333 0.65 0.00 36.12 3.01
108 109 8.416329 GCTATTTGGTTCACATCATAGGATTTT 58.584 33.333 0.00 0.00 0.00 1.82
109 110 7.560991 TGCTATTTGGTTCACATCATAGGATTT 59.439 33.333 0.00 0.00 0.00 2.17
110 111 7.062322 TGCTATTTGGTTCACATCATAGGATT 58.938 34.615 0.00 0.00 0.00 3.01
111 112 6.604171 TGCTATTTGGTTCACATCATAGGAT 58.396 36.000 0.00 0.00 0.00 3.24
112 113 6.000246 TGCTATTTGGTTCACATCATAGGA 58.000 37.500 0.00 0.00 0.00 2.94
113 114 6.713903 AGATGCTATTTGGTTCACATCATAGG 59.286 38.462 0.00 0.00 37.07 2.57
114 115 7.094890 GGAGATGCTATTTGGTTCACATCATAG 60.095 40.741 0.00 0.00 37.07 2.23
115 116 6.712095 GGAGATGCTATTTGGTTCACATCATA 59.288 38.462 0.00 0.00 37.07 2.15
116 117 5.533903 GGAGATGCTATTTGGTTCACATCAT 59.466 40.000 0.00 0.00 37.07 2.45
117 118 4.883585 GGAGATGCTATTTGGTTCACATCA 59.116 41.667 0.00 0.00 37.07 3.07
118 119 5.128919 AGGAGATGCTATTTGGTTCACATC 58.871 41.667 0.00 0.00 35.31 3.06
119 120 5.121380 AGGAGATGCTATTTGGTTCACAT 57.879 39.130 0.00 0.00 0.00 3.21
120 121 4.574674 AGGAGATGCTATTTGGTTCACA 57.425 40.909 0.00 0.00 0.00 3.58
121 122 4.336713 GGAAGGAGATGCTATTTGGTTCAC 59.663 45.833 0.00 0.00 0.00 3.18
122 123 4.526970 GGAAGGAGATGCTATTTGGTTCA 58.473 43.478 0.00 0.00 0.00 3.18
123 124 3.885901 GGGAAGGAGATGCTATTTGGTTC 59.114 47.826 0.00 0.00 0.00 3.62
124 125 3.269381 TGGGAAGGAGATGCTATTTGGTT 59.731 43.478 0.00 0.00 0.00 3.67
125 126 2.852449 TGGGAAGGAGATGCTATTTGGT 59.148 45.455 0.00 0.00 0.00 3.67
126 127 3.582998 TGGGAAGGAGATGCTATTTGG 57.417 47.619 0.00 0.00 0.00 3.28
127 128 4.522022 GGAATGGGAAGGAGATGCTATTTG 59.478 45.833 0.00 0.00 0.00 2.32
128 129 4.418190 AGGAATGGGAAGGAGATGCTATTT 59.582 41.667 0.00 0.00 0.00 1.40
129 130 3.986134 AGGAATGGGAAGGAGATGCTATT 59.014 43.478 0.00 0.00 0.00 1.73
130 131 3.606972 AGGAATGGGAAGGAGATGCTAT 58.393 45.455 0.00 0.00 0.00 2.97
131 132 3.066208 AGGAATGGGAAGGAGATGCTA 57.934 47.619 0.00 0.00 0.00 3.49
132 133 1.904440 AGGAATGGGAAGGAGATGCT 58.096 50.000 0.00 0.00 0.00 3.79
133 134 4.202503 TGAATAGGAATGGGAAGGAGATGC 60.203 45.833 0.00 0.00 0.00 3.91
134 135 5.573380 TGAATAGGAATGGGAAGGAGATG 57.427 43.478 0.00 0.00 0.00 2.90
135 136 7.507797 CTATGAATAGGAATGGGAAGGAGAT 57.492 40.000 0.00 0.00 0.00 2.75
136 137 6.942163 CTATGAATAGGAATGGGAAGGAGA 57.058 41.667 0.00 0.00 0.00 3.71
152 153 9.265901 CGTTGTAGAAAATGAGATCCTATGAAT 57.734 33.333 0.00 0.00 0.00 2.57
153 154 8.258007 ACGTTGTAGAAAATGAGATCCTATGAA 58.742 33.333 0.00 0.00 0.00 2.57
154 155 7.782049 ACGTTGTAGAAAATGAGATCCTATGA 58.218 34.615 0.00 0.00 0.00 2.15
155 156 8.425577 AACGTTGTAGAAAATGAGATCCTATG 57.574 34.615 0.00 0.00 0.00 2.23
156 157 9.099454 GAAACGTTGTAGAAAATGAGATCCTAT 57.901 33.333 0.00 0.00 0.00 2.57
157 158 8.311836 AGAAACGTTGTAGAAAATGAGATCCTA 58.688 33.333 0.00 0.00 0.00 2.94
158 159 7.162082 AGAAACGTTGTAGAAAATGAGATCCT 58.838 34.615 0.00 0.00 0.00 3.24
159 160 7.365840 AGAAACGTTGTAGAAAATGAGATCC 57.634 36.000 0.00 0.00 0.00 3.36
162 163 9.706691 AGAATAGAAACGTTGTAGAAAATGAGA 57.293 29.630 0.00 0.00 0.00 3.27
185 186 9.374838 GTTCGTAAGGTAGGAAAATCATAAGAA 57.625 33.333 0.00 0.00 34.75 2.52
186 187 7.983484 GGTTCGTAAGGTAGGAAAATCATAAGA 59.017 37.037 0.00 0.00 34.75 2.10
187 188 7.767198 TGGTTCGTAAGGTAGGAAAATCATAAG 59.233 37.037 0.00 0.00 34.75 1.73
188 189 7.622713 TGGTTCGTAAGGTAGGAAAATCATAA 58.377 34.615 0.00 0.00 34.75 1.90
189 190 7.185318 TGGTTCGTAAGGTAGGAAAATCATA 57.815 36.000 0.00 0.00 34.75 2.15
190 191 6.057321 TGGTTCGTAAGGTAGGAAAATCAT 57.943 37.500 0.00 0.00 34.75 2.45
191 192 5.486735 TGGTTCGTAAGGTAGGAAAATCA 57.513 39.130 0.00 0.00 34.75 2.57
192 193 6.605849 GTTTGGTTCGTAAGGTAGGAAAATC 58.394 40.000 0.00 0.00 34.75 2.17
193 194 5.179929 CGTTTGGTTCGTAAGGTAGGAAAAT 59.820 40.000 0.00 0.00 34.75 1.82
194 195 4.511082 CGTTTGGTTCGTAAGGTAGGAAAA 59.489 41.667 0.00 0.00 34.75 2.29
195 196 4.057432 CGTTTGGTTCGTAAGGTAGGAAA 58.943 43.478 0.00 0.00 34.75 3.13
196 197 3.320541 TCGTTTGGTTCGTAAGGTAGGAA 59.679 43.478 0.00 0.00 38.47 3.36
197 198 2.890311 TCGTTTGGTTCGTAAGGTAGGA 59.110 45.455 0.00 0.00 38.47 2.94
198 199 3.248266 CTCGTTTGGTTCGTAAGGTAGG 58.752 50.000 0.00 0.00 38.47 3.18
199 200 3.248266 CCTCGTTTGGTTCGTAAGGTAG 58.752 50.000 0.00 0.00 38.47 3.18
200 201 2.610232 GCCTCGTTTGGTTCGTAAGGTA 60.610 50.000 0.00 0.00 38.47 3.08
201 202 1.875157 GCCTCGTTTGGTTCGTAAGGT 60.875 52.381 0.00 0.00 38.47 3.50
202 203 0.794473 GCCTCGTTTGGTTCGTAAGG 59.206 55.000 0.00 0.00 38.47 2.69
203 204 0.437295 CGCCTCGTTTGGTTCGTAAG 59.563 55.000 0.00 0.00 0.00 2.34
204 205 0.249405 ACGCCTCGTTTGGTTCGTAA 60.249 50.000 0.00 0.00 36.35 3.18
205 206 0.595588 TACGCCTCGTTTGGTTCGTA 59.404 50.000 0.00 0.00 41.54 3.43
206 207 0.249405 TTACGCCTCGTTTGGTTCGT 60.249 50.000 0.00 0.00 41.54 3.85
207 208 0.860533 TTTACGCCTCGTTTGGTTCG 59.139 50.000 0.00 0.00 41.54 3.95
208 209 2.137523 TCTTTACGCCTCGTTTGGTTC 58.862 47.619 0.00 0.00 41.54 3.62
209 210 2.243602 TCTTTACGCCTCGTTTGGTT 57.756 45.000 0.00 0.00 41.54 3.67
210 211 2.467566 ATCTTTACGCCTCGTTTGGT 57.532 45.000 0.00 0.00 41.54 3.67
211 212 3.425758 GGAAATCTTTACGCCTCGTTTGG 60.426 47.826 0.00 0.00 41.54 3.28
212 213 3.187637 TGGAAATCTTTACGCCTCGTTTG 59.812 43.478 0.00 0.00 41.54 2.93
213 214 3.404899 TGGAAATCTTTACGCCTCGTTT 58.595 40.909 0.00 0.00 41.54 3.60
214 215 3.048337 TGGAAATCTTTACGCCTCGTT 57.952 42.857 0.00 0.00 41.54 3.85
215 216 2.754946 TGGAAATCTTTACGCCTCGT 57.245 45.000 0.00 0.00 44.35 4.18
216 217 3.458189 AGATGGAAATCTTTACGCCTCG 58.542 45.455 0.00 0.00 0.00 4.63
217 218 6.238402 GGTTAAGATGGAAATCTTTACGCCTC 60.238 42.308 6.30 0.00 39.64 4.70
218 219 5.589050 GGTTAAGATGGAAATCTTTACGCCT 59.411 40.000 6.30 0.00 39.64 5.52
219 220 5.220989 GGGTTAAGATGGAAATCTTTACGCC 60.221 44.000 17.08 12.48 42.28 5.68
220 221 5.220989 GGGGTTAAGATGGAAATCTTTACGC 60.221 44.000 18.56 18.56 44.77 4.42
221 222 5.298527 GGGGGTTAAGATGGAAATCTTTACG 59.701 44.000 6.30 0.00 39.64 3.18
222 223 6.432581 AGGGGGTTAAGATGGAAATCTTTAC 58.567 40.000 6.30 7.48 40.91 2.01
223 224 6.354477 GGAGGGGGTTAAGATGGAAATCTTTA 60.354 42.308 6.30 0.00 40.91 1.85
224 225 5.519808 GAGGGGGTTAAGATGGAAATCTTT 58.480 41.667 6.30 0.00 40.91 2.52
225 226 4.079154 GGAGGGGGTTAAGATGGAAATCTT 60.079 45.833 6.25 6.25 42.87 2.40
226 227 3.463704 GGAGGGGGTTAAGATGGAAATCT 59.536 47.826 0.00 0.00 0.00 2.40
227 228 3.436615 GGGAGGGGGTTAAGATGGAAATC 60.437 52.174 0.00 0.00 0.00 2.17
228 229 2.518407 GGGAGGGGGTTAAGATGGAAAT 59.482 50.000 0.00 0.00 0.00 2.17
229 230 1.927371 GGGAGGGGGTTAAGATGGAAA 59.073 52.381 0.00 0.00 0.00 3.13
234 235 0.728843 TGGAGGGAGGGGGTTAAGAT 59.271 55.000 0.00 0.00 0.00 2.40
237 238 1.618447 GCTGGAGGGAGGGGGTTAA 60.618 63.158 0.00 0.00 0.00 2.01
241 242 2.319762 AAATGCTGGAGGGAGGGGG 61.320 63.158 0.00 0.00 0.00 5.40
242 243 1.076485 CAAATGCTGGAGGGAGGGG 60.076 63.158 0.00 0.00 0.00 4.79
243 244 0.394899 GACAAATGCTGGAGGGAGGG 60.395 60.000 0.00 0.00 0.00 4.30
248 249 2.486982 CACAAGAGACAAATGCTGGAGG 59.513 50.000 0.00 0.00 0.00 4.30
252 253 2.095364 GGAGCACAAGAGACAAATGCTG 60.095 50.000 1.07 0.00 46.33 4.41
270 271 3.058293 TGTTGCTACAATGAAAAGCGGAG 60.058 43.478 0.00 0.00 39.14 4.63
271 272 2.881513 TGTTGCTACAATGAAAAGCGGA 59.118 40.909 0.00 0.00 39.14 5.54
273 274 8.786937 ATAATATGTTGCTACAATGAAAAGCG 57.213 30.769 4.79 0.00 39.14 4.68
300 301 7.171653 AGTTCTAAGAGGCAAGCTTAAAATCT 58.828 34.615 0.00 0.00 0.00 2.40
314 315 4.979197 CAGCAACGCTATAGTTCTAAGAGG 59.021 45.833 0.84 0.00 36.40 3.69
317 318 8.023706 TGATATCAGCAACGCTATAGTTCTAAG 58.976 37.037 0.00 0.00 36.40 2.18
329 330 4.478843 AATGATGTGATATCAGCAACGC 57.521 40.909 5.42 0.00 37.28 4.84
331 332 6.630444 AGGAAATGATGTGATATCAGCAAC 57.370 37.500 5.42 7.06 37.28 4.17
364 365 6.487960 CAAACAGTTTGTCGTGGTTACATTA 58.512 36.000 16.77 0.00 35.94 1.90
441 442 9.224267 TCTCTTCTCCTTCAAAATTACTCATTG 57.776 33.333 0.00 0.00 0.00 2.82
442 443 9.447157 CTCTCTTCTCCTTCAAAATTACTCATT 57.553 33.333 0.00 0.00 0.00 2.57
449 452 5.590976 ACCCTCTCTTCTCCTTCAAAATT 57.409 39.130 0.00 0.00 0.00 1.82
476 479 4.586421 TCTTGTTTTATGTGGCAATGGTCA 59.414 37.500 0.00 0.00 0.00 4.02
477 480 5.048083 TCTCTTGTTTTATGTGGCAATGGTC 60.048 40.000 0.00 0.00 0.00 4.02
485 488 8.322906 TCATAGTTGTCTCTTGTTTTATGTGG 57.677 34.615 0.00 0.00 0.00 4.17
491 494 6.601613 TGGTGTTCATAGTTGTCTCTTGTTTT 59.398 34.615 0.00 0.00 0.00 2.43
496 499 5.290493 TGTGGTGTTCATAGTTGTCTCTT 57.710 39.130 0.00 0.00 0.00 2.85
512 515 6.748333 AAATCACTCATTGAGTATGTGGTG 57.252 37.500 18.59 6.34 41.37 4.17
517 520 8.272545 TCCTTCAAAATCACTCATTGAGTATG 57.727 34.615 18.59 8.30 41.37 2.39
518 521 8.324306 TCTCCTTCAAAATCACTCATTGAGTAT 58.676 33.333 18.59 10.11 41.37 2.12
519 522 7.679783 TCTCCTTCAAAATCACTCATTGAGTA 58.320 34.615 18.59 8.38 41.37 2.59
520 523 6.537355 TCTCCTTCAAAATCACTCATTGAGT 58.463 36.000 13.61 13.61 44.44 3.41
521 524 7.389884 TCTTCTCCTTCAAAATCACTCATTGAG 59.610 37.037 12.17 12.17 37.77 3.02
522 525 7.226441 TCTTCTCCTTCAAAATCACTCATTGA 58.774 34.615 0.00 0.00 39.11 2.57
523 526 7.389884 TCTCTTCTCCTTCAAAATCACTCATTG 59.610 37.037 0.00 0.00 0.00 2.82
524 527 7.456725 TCTCTTCTCCTTCAAAATCACTCATT 58.543 34.615 0.00 0.00 0.00 2.57
525 528 7.013823 TCTCTTCTCCTTCAAAATCACTCAT 57.986 36.000 0.00 0.00 0.00 2.90
526 529 6.425210 TCTCTTCTCCTTCAAAATCACTCA 57.575 37.500 0.00 0.00 0.00 3.41
527 530 6.371271 CCTTCTCTTCTCCTTCAAAATCACTC 59.629 42.308 0.00 0.00 0.00 3.51
528 531 6.043706 TCCTTCTCTTCTCCTTCAAAATCACT 59.956 38.462 0.00 0.00 0.00 3.41
529 532 6.234177 TCCTTCTCTTCTCCTTCAAAATCAC 58.766 40.000 0.00 0.00 0.00 3.06
530 533 6.439636 TCCTTCTCTTCTCCTTCAAAATCA 57.560 37.500 0.00 0.00 0.00 2.57
531 534 7.066887 GGAATCCTTCTCTTCTCCTTCAAAATC 59.933 40.741 0.00 0.00 0.00 2.17
532 535 6.889177 GGAATCCTTCTCTTCTCCTTCAAAAT 59.111 38.462 0.00 0.00 0.00 1.82
533 536 6.183361 TGGAATCCTTCTCTTCTCCTTCAAAA 60.183 38.462 0.00 0.00 0.00 2.44
534 537 5.310594 TGGAATCCTTCTCTTCTCCTTCAAA 59.689 40.000 0.00 0.00 0.00 2.69
535 538 4.846367 TGGAATCCTTCTCTTCTCCTTCAA 59.154 41.667 0.00 0.00 0.00 2.69
536 539 4.223923 GTGGAATCCTTCTCTTCTCCTTCA 59.776 45.833 0.00 0.00 0.00 3.02
537 540 4.679372 CGTGGAATCCTTCTCTTCTCCTTC 60.679 50.000 0.00 0.00 0.00 3.46
538 541 3.196685 CGTGGAATCCTTCTCTTCTCCTT 59.803 47.826 0.00 0.00 0.00 3.36
539 542 2.763448 CGTGGAATCCTTCTCTTCTCCT 59.237 50.000 0.00 0.00 0.00 3.69
540 543 2.761208 TCGTGGAATCCTTCTCTTCTCC 59.239 50.000 0.00 0.00 0.00 3.71
541 544 4.098654 TGATCGTGGAATCCTTCTCTTCTC 59.901 45.833 0.00 0.00 0.00 2.87
542 545 4.026744 TGATCGTGGAATCCTTCTCTTCT 58.973 43.478 0.00 0.00 0.00 2.85
543 546 4.116238 GTGATCGTGGAATCCTTCTCTTC 58.884 47.826 0.00 0.00 0.00 2.87
544 547 3.772025 AGTGATCGTGGAATCCTTCTCTT 59.228 43.478 0.00 0.00 0.00 2.85
545 548 3.131933 CAGTGATCGTGGAATCCTTCTCT 59.868 47.826 0.00 0.00 0.00 3.10
546 549 3.452474 CAGTGATCGTGGAATCCTTCTC 58.548 50.000 0.00 0.00 0.00 2.87
547 550 2.419297 GCAGTGATCGTGGAATCCTTCT 60.419 50.000 0.00 0.00 0.00 2.85
548 551 1.936547 GCAGTGATCGTGGAATCCTTC 59.063 52.381 0.00 0.00 0.00 3.46
549 552 1.407437 GGCAGTGATCGTGGAATCCTT 60.407 52.381 0.00 0.00 0.00 3.36
550 553 0.179000 GGCAGTGATCGTGGAATCCT 59.821 55.000 0.00 0.00 0.00 3.24
551 554 0.107703 TGGCAGTGATCGTGGAATCC 60.108 55.000 0.00 0.00 0.00 3.01
552 555 1.009829 GTGGCAGTGATCGTGGAATC 58.990 55.000 0.00 0.00 0.00 2.52
553 556 0.324614 TGTGGCAGTGATCGTGGAAT 59.675 50.000 0.00 0.00 0.00 3.01
554 557 0.324614 ATGTGGCAGTGATCGTGGAA 59.675 50.000 0.00 0.00 0.00 3.53
555 558 0.391528 CATGTGGCAGTGATCGTGGA 60.392 55.000 0.00 0.00 0.00 4.02
556 559 0.391528 TCATGTGGCAGTGATCGTGG 60.392 55.000 0.00 0.00 0.00 4.94
557 560 1.441738 TTCATGTGGCAGTGATCGTG 58.558 50.000 0.00 0.00 0.00 4.35
558 561 1.806542 GTTTCATGTGGCAGTGATCGT 59.193 47.619 0.00 0.00 0.00 3.73
559 562 1.131126 GGTTTCATGTGGCAGTGATCG 59.869 52.381 0.00 0.00 0.00 3.69
560 563 2.161855 TGGTTTCATGTGGCAGTGATC 58.838 47.619 0.00 0.00 0.00 2.92
561 564 2.165167 CTGGTTTCATGTGGCAGTGAT 58.835 47.619 0.00 0.00 0.00 3.06
562 565 1.608055 CTGGTTTCATGTGGCAGTGA 58.392 50.000 0.00 0.00 0.00 3.41
563 566 0.038892 GCTGGTTTCATGTGGCAGTG 60.039 55.000 0.00 0.00 0.00 3.66
564 567 1.518056 CGCTGGTTTCATGTGGCAGT 61.518 55.000 0.00 0.00 0.00 4.40
565 568 1.210931 CGCTGGTTTCATGTGGCAG 59.789 57.895 0.00 0.00 0.00 4.85
566 569 1.228094 TCGCTGGTTTCATGTGGCA 60.228 52.632 0.00 0.00 0.00 4.92
567 570 1.210155 GTCGCTGGTTTCATGTGGC 59.790 57.895 0.00 0.00 0.00 5.01
568 571 0.888736 TGGTCGCTGGTTTCATGTGG 60.889 55.000 0.00 0.00 0.00 4.17
569 572 0.238289 GTGGTCGCTGGTTTCATGTG 59.762 55.000 0.00 0.00 0.00 3.21
570 573 0.108585 AGTGGTCGCTGGTTTCATGT 59.891 50.000 0.00 0.00 0.00 3.21
571 574 2.093306 TAGTGGTCGCTGGTTTCATG 57.907 50.000 0.00 0.00 0.00 3.07
572 575 2.236146 TCATAGTGGTCGCTGGTTTCAT 59.764 45.455 0.00 0.00 0.00 2.57
573 576 1.621317 TCATAGTGGTCGCTGGTTTCA 59.379 47.619 0.00 0.00 0.00 2.69
574 577 2.380084 TCATAGTGGTCGCTGGTTTC 57.620 50.000 0.00 0.00 0.00 2.78
575 578 2.301870 TCTTCATAGTGGTCGCTGGTTT 59.698 45.455 0.00 0.00 0.00 3.27
576 579 1.899814 TCTTCATAGTGGTCGCTGGTT 59.100 47.619 0.00 0.00 0.00 3.67
577 580 1.204941 GTCTTCATAGTGGTCGCTGGT 59.795 52.381 0.00 0.00 0.00 4.00
578 581 1.471676 GGTCTTCATAGTGGTCGCTGG 60.472 57.143 0.00 0.00 0.00 4.85
579 582 1.204704 TGGTCTTCATAGTGGTCGCTG 59.795 52.381 0.00 0.00 0.00 5.18
580 583 1.204941 GTGGTCTTCATAGTGGTCGCT 59.795 52.381 0.00 0.00 0.00 4.93
581 584 1.067142 TGTGGTCTTCATAGTGGTCGC 60.067 52.381 0.00 0.00 0.00 5.19
582 585 3.526931 ATGTGGTCTTCATAGTGGTCG 57.473 47.619 0.00 0.00 0.00 4.79
583 586 5.070446 TCCATATGTGGTCTTCATAGTGGTC 59.930 44.000 8.51 0.00 46.16 4.02
584 587 4.968719 TCCATATGTGGTCTTCATAGTGGT 59.031 41.667 8.51 0.00 46.16 4.16
585 588 5.163311 TGTCCATATGTGGTCTTCATAGTGG 60.163 44.000 8.51 0.00 46.16 4.00
586 589 5.917462 TGTCCATATGTGGTCTTCATAGTG 58.083 41.667 8.51 0.00 46.16 2.74
587 590 6.560003 TTGTCCATATGTGGTCTTCATAGT 57.440 37.500 8.51 0.00 46.16 2.12
588 591 7.864108 TTTTGTCCATATGTGGTCTTCATAG 57.136 36.000 8.51 0.00 46.16 2.23
589 592 7.226523 CGATTTTGTCCATATGTGGTCTTCATA 59.773 37.037 8.51 0.00 46.16 2.15
590 593 6.038603 CGATTTTGTCCATATGTGGTCTTCAT 59.961 38.462 8.51 0.00 46.16 2.57
591 594 5.353956 CGATTTTGTCCATATGTGGTCTTCA 59.646 40.000 8.51 2.04 46.16 3.02
592 595 5.354234 ACGATTTTGTCCATATGTGGTCTTC 59.646 40.000 8.51 0.00 46.16 2.87
593 596 5.253330 ACGATTTTGTCCATATGTGGTCTT 58.747 37.500 8.51 0.00 46.16 3.01
594 597 4.843728 ACGATTTTGTCCATATGTGGTCT 58.156 39.130 8.51 0.00 46.16 3.85
595 598 5.156804 GACGATTTTGTCCATATGTGGTC 57.843 43.478 8.51 3.47 46.16 4.02
615 618 6.662414 TTCATCGATATGAACAACTTGGAC 57.338 37.500 0.00 0.00 45.17 4.02
627 630 0.798776 GCCCGGCTTTCATCGATATG 59.201 55.000 0.71 0.00 0.00 1.78
632 635 1.305219 TTTGAGCCCGGCTTTCATCG 61.305 55.000 14.70 0.00 39.88 3.84
635 638 0.889186 GACTTTGAGCCCGGCTTTCA 60.889 55.000 14.70 5.19 39.88 2.69
636 639 0.889186 TGACTTTGAGCCCGGCTTTC 60.889 55.000 14.70 2.10 39.88 2.62
646 649 2.877975 CCCCCAGCATGACTTTGAG 58.122 57.895 0.00 0.00 39.69 3.02
669 672 9.692325 AGCTCTTCCTTTTTGATATAGTTGAAT 57.308 29.630 0.00 0.00 0.00 2.57
670 673 8.950210 CAGCTCTTCCTTTTTGATATAGTTGAA 58.050 33.333 0.00 0.00 0.00 2.69
671 674 8.321353 TCAGCTCTTCCTTTTTGATATAGTTGA 58.679 33.333 0.00 0.00 0.00 3.18
672 675 8.498054 TCAGCTCTTCCTTTTTGATATAGTTG 57.502 34.615 0.00 0.00 0.00 3.16
673 676 9.171877 CTTCAGCTCTTCCTTTTTGATATAGTT 57.828 33.333 0.00 0.00 0.00 2.24
674 677 8.325046 ACTTCAGCTCTTCCTTTTTGATATAGT 58.675 33.333 0.00 0.00 0.00 2.12
675 678 8.729805 ACTTCAGCTCTTCCTTTTTGATATAG 57.270 34.615 0.00 0.00 0.00 1.31
678 681 8.918202 TTTACTTCAGCTCTTCCTTTTTGATA 57.082 30.769 0.00 0.00 0.00 2.15
681 684 9.965824 TTTATTTACTTCAGCTCTTCCTTTTTG 57.034 29.630 0.00 0.00 0.00 2.44
717 2292 9.897744 TTGTTGCAGATTATTTGACTTTCTTAG 57.102 29.630 0.00 0.00 0.00 2.18
718 2293 9.897744 CTTGTTGCAGATTATTTGACTTTCTTA 57.102 29.630 0.00 0.00 0.00 2.10
722 2297 7.288810 TCCTTGTTGCAGATTATTTGACTTT 57.711 32.000 0.00 0.00 0.00 2.66
723 2298 6.071728 CCTCCTTGTTGCAGATTATTTGACTT 60.072 38.462 0.00 0.00 0.00 3.01
725 2300 5.644644 CCTCCTTGTTGCAGATTATTTGAC 58.355 41.667 0.00 0.00 0.00 3.18
726 2301 4.158394 GCCTCCTTGTTGCAGATTATTTGA 59.842 41.667 0.00 0.00 0.00 2.69
727 2302 4.159135 AGCCTCCTTGTTGCAGATTATTTG 59.841 41.667 0.00 0.00 0.00 2.32
732 2307 1.891150 CAAGCCTCCTTGTTGCAGATT 59.109 47.619 0.00 0.00 42.76 2.40
797 2372 8.999431 TGTTGTGTTTTTGCTGGTTTTATTTTA 58.001 25.926 0.00 0.00 0.00 1.52
828 2410 8.787852 CCACAGAAGCTAAAGTTAGATCTTTTT 58.212 33.333 0.00 2.81 38.40 1.94
829 2411 7.094592 GCCACAGAAGCTAAAGTTAGATCTTTT 60.095 37.037 0.00 0.00 38.40 2.27
830 2412 6.372937 GCCACAGAAGCTAAAGTTAGATCTTT 59.627 38.462 0.00 0.00 40.22 2.52
840 2422 0.036388 TCCGGCCACAGAAGCTAAAG 60.036 55.000 2.24 0.00 0.00 1.85
853 2435 2.359478 AATTGTGGTCGTCCGGCC 60.359 61.111 2.79 2.79 41.01 6.13
856 2438 1.743995 GGGGAATTGTGGTCGTCCG 60.744 63.158 0.00 0.00 36.30 4.79
1271 2878 2.682893 GCAACCAGCGATCGAGAAT 58.317 52.632 21.57 0.00 0.00 2.40
1337 2944 4.455533 GGACATTGCTGAAGACATGTAACA 59.544 41.667 0.00 0.00 0.00 2.41
1397 3010 1.528161 GCATCAAGCCAACAAAGTTGC 59.472 47.619 4.42 1.23 37.23 4.17
1453 3066 8.768955 CAAATTATGTAGAGGCACACTTAGATC 58.231 37.037 0.00 0.00 0.00 2.75
1705 3318 5.599732 TGTCCTCAACCAAAAACATGAATG 58.400 37.500 0.00 0.00 0.00 2.67
1706 3319 5.867903 TGTCCTCAACCAAAAACATGAAT 57.132 34.783 0.00 0.00 0.00 2.57
1919 3541 4.873746 ATAGGGATACACGTCATTCTGG 57.126 45.455 0.00 0.00 39.74 3.86
1997 3620 5.977129 ACTATTGAACAACAAAGCCGAAAAG 59.023 36.000 0.00 0.00 42.03 2.27
2002 3625 5.607119 ACTACTATTGAACAACAAAGCCG 57.393 39.130 0.00 0.00 42.03 5.52
2221 3846 1.227674 GAGGCTATTGGGACCAGCG 60.228 63.158 0.00 0.00 36.12 5.18
2321 3946 9.663904 ATTGTAATGATTCGGTATTCAAATTCG 57.336 29.630 0.00 0.00 0.00 3.34
2357 3983 7.335171 CCATGCATGCTCATATAAAGTAGCTAA 59.665 37.037 21.69 0.00 35.95 3.09
2514 4151 1.072331 TCTGAAACCTGAGCCTTCACC 59.928 52.381 0.00 0.00 0.00 4.02
2574 4211 8.356657 ACTATCAGATTGAAAGGAGAATAGACG 58.643 37.037 0.00 0.00 0.00 4.18
2584 4221 5.996513 CAGGGATCACTATCAGATTGAAAGG 59.003 44.000 0.00 0.00 33.41 3.11
2591 4228 3.161067 CCGACAGGGATCACTATCAGAT 58.839 50.000 3.75 0.00 38.47 2.90
2608 4245 1.227853 AAATGCCCCGATAGCCGAC 60.228 57.895 0.00 0.00 41.76 4.79
2609 4246 1.070786 GAAATGCCCCGATAGCCGA 59.929 57.895 0.00 0.00 41.76 5.54
2610 4247 1.071471 AGAAATGCCCCGATAGCCG 59.929 57.895 0.00 0.00 38.18 5.52
2611 4248 0.108585 TCAGAAATGCCCCGATAGCC 59.891 55.000 0.00 0.00 0.00 3.93
2612 4249 1.876156 CTTCAGAAATGCCCCGATAGC 59.124 52.381 0.00 0.00 0.00 2.97
2658 4295 0.671796 GTGGTTGGGTTACAGGTTGC 59.328 55.000 0.00 0.00 0.00 4.17
2671 4308 2.859165 ACCTGATGTACCAGTGGTTG 57.141 50.000 22.49 4.33 37.09 3.77
2761 4398 0.666274 GAATCGCGGTGTGTGTGAGA 60.666 55.000 6.13 0.00 0.00 3.27
2769 4406 1.659098 GAAAAGATCGAATCGCGGTGT 59.341 47.619 6.13 0.00 41.33 4.16
2774 4411 4.509600 AGAGGAATGAAAAGATCGAATCGC 59.490 41.667 0.00 0.00 0.00 4.58
2810 4447 2.191375 CCCCATGTCTCATGCGCT 59.809 61.111 9.73 0.00 0.00 5.92
2812 4449 0.179037 ATGTCCCCATGTCTCATGCG 60.179 55.000 4.43 0.00 0.00 4.73
2819 4456 0.179073 CAGGTCGATGTCCCCATGTC 60.179 60.000 0.00 0.00 0.00 3.06
2821 4458 0.253044 AACAGGTCGATGTCCCCATG 59.747 55.000 0.00 0.00 31.50 3.66
2824 4461 1.221021 GGAACAGGTCGATGTCCCC 59.779 63.158 0.00 0.00 31.50 4.81
2825 4462 1.481871 TAGGAACAGGTCGATGTCCC 58.518 55.000 0.00 0.00 31.50 4.46
2826 4463 3.821421 AATAGGAACAGGTCGATGTCC 57.179 47.619 0.00 0.00 31.50 4.02
2827 4464 3.309954 GCAAATAGGAACAGGTCGATGTC 59.690 47.826 0.00 0.00 31.50 3.06
2828 4465 3.270877 GCAAATAGGAACAGGTCGATGT 58.729 45.455 0.00 0.00 33.96 3.06
2829 4466 2.614057 GGCAAATAGGAACAGGTCGATG 59.386 50.000 0.00 0.00 0.00 3.84
2830 4467 2.505819 AGGCAAATAGGAACAGGTCGAT 59.494 45.455 0.00 0.00 0.00 3.59
2831 4468 1.906574 AGGCAAATAGGAACAGGTCGA 59.093 47.619 0.00 0.00 0.00 4.20
2832 4469 2.009774 CAGGCAAATAGGAACAGGTCG 58.990 52.381 0.00 0.00 0.00 4.79
2833 4470 1.745653 GCAGGCAAATAGGAACAGGTC 59.254 52.381 0.00 0.00 0.00 3.85
2834 4471 1.616994 GGCAGGCAAATAGGAACAGGT 60.617 52.381 0.00 0.00 0.00 4.00
2835 4472 1.106285 GGCAGGCAAATAGGAACAGG 58.894 55.000 0.00 0.00 0.00 4.00
2839 4476 0.039472 TGCAGGCAGGCAAATAGGAA 59.961 50.000 1.11 0.00 41.65 3.36
3281 4918 2.176364 AGCCTTGGGACCTAGATACGTA 59.824 50.000 0.00 0.00 0.00 3.57
3282 4919 1.063114 AGCCTTGGGACCTAGATACGT 60.063 52.381 1.25 0.00 0.00 3.57
3283 4920 1.614413 GAGCCTTGGGACCTAGATACG 59.386 57.143 1.25 0.00 0.00 3.06
3284 4921 1.614413 CGAGCCTTGGGACCTAGATAC 59.386 57.143 1.25 0.00 0.00 2.24
3318 4957 7.828223 TGCAAAATAAATATTTGGGCATTGACT 59.172 29.630 11.05 0.00 39.60 3.41
3319 4958 7.983307 TGCAAAATAAATATTTGGGCATTGAC 58.017 30.769 11.05 6.35 39.60 3.18
3408 5051 3.009916 AGAAGCATGTTCAGGAAGACCAT 59.990 43.478 9.64 0.00 38.94 3.55
3411 5054 3.188048 CACAGAAGCATGTTCAGGAAGAC 59.812 47.826 9.64 0.00 0.00 3.01
3446 5090 9.508642 AAAAAGTAAGATGCTCTAAGCTAGTTT 57.491 29.630 0.00 0.00 42.97 2.66
3537 5190 3.503748 ACAGTAATTTCACAAGGAGCAGC 59.496 43.478 0.00 0.00 0.00 5.25
3582 5235 1.214424 ACAGGCACTAAAGGTGGTGTT 59.786 47.619 0.00 0.00 45.44 3.32
3594 5247 2.258591 CGACGCTACACAGGCACT 59.741 61.111 0.00 0.00 43.88 4.40
3816 5497 5.952526 ATTTGTAGGTAAGACCAAAACGG 57.047 39.130 0.00 0.00 41.95 4.44
3873 5554 8.593492 TGTCACAAATACATATATGTGCTCTC 57.407 34.615 25.48 10.43 42.16 3.20
3907 5589 9.508642 TTTTGAACAAACTTGGGAGTTAAAAAT 57.491 25.926 0.00 0.00 45.18 1.82
3955 5637 1.338020 CTGGATTTATTTCCGCCTGGC 59.662 52.381 9.11 9.11 38.74 4.85
3958 5640 3.181454 ACGATCTGGATTTATTTCCGCCT 60.181 43.478 0.00 0.00 38.74 5.52
3962 5644 6.884280 ATTGGACGATCTGGATTTATTTCC 57.116 37.500 0.00 0.00 36.24 3.13
3975 5657 7.113684 CACGATCTTAAGTCTAATTGGACGATC 59.886 40.741 18.91 18.91 40.76 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.