Multiple sequence alignment - TraesCS4D01G279300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G279300 chr4D 100.000 3846 0 0 1 3846 450333776 450329931 0.000000e+00 7103.0
1 TraesCS4D01G279300 chr4D 77.938 417 58 24 1706 2096 93069536 93069944 2.990000e-56 230.0
2 TraesCS4D01G279300 chr4D 92.105 76 6 0 2231 2306 497895600 497895525 1.460000e-19 108.0
3 TraesCS4D01G279300 chr4B 94.411 3346 138 16 1 3306 563630148 563626812 0.000000e+00 5097.0
4 TraesCS4D01G279300 chr4B 95.021 241 9 2 3306 3545 563626762 563626524 3.630000e-100 375.0
5 TraesCS4D01G279300 chr4B 92.105 76 6 0 2231 2306 639123336 639123261 1.460000e-19 108.0
6 TraesCS4D01G279300 chr4A 94.822 2955 83 26 363 3266 16246031 16248966 0.000000e+00 4545.0
7 TraesCS4D01G279300 chr4A 90.582 361 25 4 3495 3846 16249041 16249401 1.620000e-128 470.0
8 TraesCS4D01G279300 chr4A 91.329 346 21 4 11 350 16245606 16245948 7.530000e-127 464.0
9 TraesCS4D01G279300 chr4A 77.262 431 62 25 1693 2096 489434634 489434213 1.800000e-53 220.0
10 TraesCS4D01G279300 chr7B 88.778 704 43 14 131 818 703006373 703005690 0.000000e+00 830.0
11 TraesCS4D01G279300 chr7B 88.372 129 9 3 396 518 37373166 37373038 2.390000e-32 150.0
12 TraesCS4D01G279300 chr7B 91.667 72 6 0 2232 2303 494218330 494218401 2.440000e-17 100.0
13 TraesCS4D01G279300 chr1B 85.185 513 34 14 81 582 67348756 67349237 4.470000e-134 488.0
14 TraesCS4D01G279300 chrUn 90.698 129 6 3 396 518 75656701 75656829 2.380000e-37 167.0
15 TraesCS4D01G279300 chrUn 90.698 129 6 3 396 518 75683560 75683688 2.380000e-37 167.0
16 TraesCS4D01G279300 chr6B 90.698 129 6 3 396 518 674318504 674318632 2.380000e-37 167.0
17 TraesCS4D01G279300 chr2B 90.698 129 6 3 396 518 118306617 118306745 2.380000e-37 167.0
18 TraesCS4D01G279300 chr7A 90.244 82 8 0 2013 2094 8916186 8916267 1.460000e-19 108.0
19 TraesCS4D01G279300 chr7A 91.892 74 6 0 2230 2303 528359162 528359089 1.890000e-18 104.0
20 TraesCS4D01G279300 chr5A 92.105 76 6 0 2231 2306 678202750 678202675 1.460000e-19 108.0
21 TraesCS4D01G279300 chr7D 90.000 80 8 0 2015 2094 8479815 8479894 1.890000e-18 104.0
22 TraesCS4D01G279300 chr7D 91.667 72 6 0 2232 2303 470200423 470200494 2.440000e-17 100.0
23 TraesCS4D01G279300 chr6A 100.000 29 0 0 3603 3631 578956863 578956835 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G279300 chr4D 450329931 450333776 3845 True 7103.000000 7103 100.000000 1 3846 1 chr4D.!!$R1 3845
1 TraesCS4D01G279300 chr4B 563626524 563630148 3624 True 2736.000000 5097 94.716000 1 3545 2 chr4B.!!$R2 3544
2 TraesCS4D01G279300 chr4A 16245606 16249401 3795 False 1826.333333 4545 92.244333 11 3846 3 chr4A.!!$F1 3835
3 TraesCS4D01G279300 chr7B 703005690 703006373 683 True 830.000000 830 88.778000 131 818 1 chr7B.!!$R2 687

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 156 0.611618 TTGCCCTTTGCGTCCATGAT 60.612 50.0 0.00 0.00 45.6 2.45 F
1237 1370 0.803768 CATGAACTCGAGGGACAGCG 60.804 60.0 18.41 5.67 0.0 5.18 F
2138 2275 0.736053 GCTGGTCACTCTACTCCTCG 59.264 60.0 0.00 0.00 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2138 2275 0.596083 CGGATCAGTGAGCGATCACC 60.596 60.0 28.78 13.36 40.93 4.02 R
2269 2406 0.181350 CCTCCACCATAGGCTTCCAC 59.819 60.0 0.00 0.00 0.00 4.02 R
3587 3792 0.316841 CTCCTCCCAGCGATCTAAGC 59.683 60.0 0.00 0.00 0.00 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 95 1.613836 CCTCAAAGCCAGTTCTTGCT 58.386 50.000 0.00 0.00 40.17 3.91
123 134 4.006319 GAGGTTCATCTTAGCAAGCTTGT 58.994 43.478 26.55 15.87 0.00 3.16
144 156 0.611618 TTGCCCTTTGCGTCCATGAT 60.612 50.000 0.00 0.00 45.60 2.45
197 210 4.678622 GGTTAGGTGTTTTGGTTTCTGTG 58.321 43.478 0.00 0.00 0.00 3.66
261 274 3.007614 TCTGTTCCTGGTTACCTACTTGC 59.992 47.826 2.07 0.00 0.00 4.01
294 307 2.684881 GCATCACCATACCAACTGGAAG 59.315 50.000 1.86 0.00 37.22 3.46
302 315 4.142315 CCATACCAACTGGAAGAATTGCTG 60.142 45.833 1.86 0.00 41.00 4.41
304 317 1.891150 CCAACTGGAAGAATTGCTGCT 59.109 47.619 0.00 0.00 38.89 4.24
305 318 2.094854 CCAACTGGAAGAATTGCTGCTC 60.095 50.000 0.00 0.00 38.89 4.26
306 319 2.818432 CAACTGGAAGAATTGCTGCTCT 59.182 45.455 0.00 0.00 38.89 4.09
426 509 6.128138 AGTCATGTCTAGTTAGGCCTTTTT 57.872 37.500 12.58 0.00 0.00 1.94
499 590 1.467734 CTGGTTTCATCAGCTGAGTGC 59.532 52.381 22.96 9.85 43.29 4.40
571 667 1.069513 TGTGTTCGGGAAGTACAGTGG 59.930 52.381 0.00 0.00 30.67 4.00
635 731 7.809238 TCAATTCTGTTGGATCCATTCTATCT 58.191 34.615 17.06 0.00 0.00 1.98
690 786 7.993183 TCTTTCACTCCTCTTGTAATTTTCTGT 59.007 33.333 0.00 0.00 0.00 3.41
802 906 1.991965 GCGCACCATGTTTTTACCATG 59.008 47.619 0.30 0.00 39.50 3.66
820 924 4.102996 ACCATGTTTCCTTTGCTCCAAATT 59.897 37.500 0.00 0.00 32.70 1.82
825 929 3.124578 TCCTTTGCTCCAAATTTTGCC 57.875 42.857 3.50 0.00 32.70 4.52
862 966 9.508567 GTAATTTGAATTTAGGAGCAAGATGAC 57.491 33.333 0.00 0.00 0.00 3.06
889 1016 4.401925 CCTTCTGACAGTTTCCAATCCTT 58.598 43.478 1.59 0.00 0.00 3.36
899 1026 7.896811 ACAGTTTCCAATCCTTTATTTCTTCC 58.103 34.615 0.00 0.00 0.00 3.46
900 1027 7.039011 ACAGTTTCCAATCCTTTATTTCTTCCC 60.039 37.037 0.00 0.00 0.00 3.97
905 1032 6.437162 TCCAATCCTTTATTTCTTCCCAGTTG 59.563 38.462 0.00 0.00 0.00 3.16
911 1038 2.358322 TTTCTTCCCAGTTGGACACC 57.642 50.000 0.00 0.00 45.11 4.16
923 1050 1.670791 TGGACACCGAAGACAAAACC 58.329 50.000 0.00 0.00 0.00 3.27
927 1054 3.249320 GGACACCGAAGACAAAACCTTAC 59.751 47.826 0.00 0.00 0.00 2.34
933 1060 4.337274 CCGAAGACAAAACCTTACACCTTT 59.663 41.667 0.00 0.00 0.00 3.11
1170 1300 2.113433 CCTGCAGCAGAGCCACATC 61.113 63.158 24.90 0.00 32.44 3.06
1223 1356 3.517140 GCCGGCCGCATTCATGAA 61.517 61.111 22.85 11.26 37.47 2.57
1234 1367 2.677902 GCATTCATGAACTCGAGGGACA 60.678 50.000 18.41 13.47 0.00 4.02
1237 1370 0.803768 CATGAACTCGAGGGACAGCG 60.804 60.000 18.41 5.67 0.00 5.18
2102 2239 1.683418 CTCCACCCGTAAGCTACCCC 61.683 65.000 0.00 0.00 0.00 4.95
2138 2275 0.736053 GCTGGTCACTCTACTCCTCG 59.264 60.000 0.00 0.00 0.00 4.63
2142 2279 1.339824 GGTCACTCTACTCCTCGGTGA 60.340 57.143 0.00 0.00 35.04 4.02
2278 2415 4.021925 GTCCGCCTGTGGAAGCCT 62.022 66.667 0.04 0.00 40.44 4.58
2784 2930 3.479269 CGACTTCCTCAACGGCGC 61.479 66.667 6.90 0.00 0.00 6.53
2827 2973 3.428282 TCGTCGTCGCAGCTGCTA 61.428 61.111 34.22 23.18 39.32 3.49
2854 3000 0.881796 TCGTCACTTGAGCTGTCGAT 59.118 50.000 0.00 0.00 0.00 3.59
3264 3417 2.046023 TACTCGCTCCGTCCGGAA 60.046 61.111 5.23 0.00 44.66 4.30
3265 3418 1.452651 TACTCGCTCCGTCCGGAAT 60.453 57.895 5.23 0.00 44.66 3.01
3266 3419 1.721664 TACTCGCTCCGTCCGGAATG 61.722 60.000 5.23 0.76 44.66 2.67
3267 3420 3.064987 CTCGCTCCGTCCGGAATGT 62.065 63.158 5.23 0.00 44.66 2.71
3268 3421 2.582498 CGCTCCGTCCGGAATGTC 60.582 66.667 5.23 0.00 44.66 3.06
3269 3422 2.202892 GCTCCGTCCGGAATGTCC 60.203 66.667 5.23 0.00 44.66 4.02
3292 3445 5.449041 CCGGAATTACATGTCACAGAAATGG 60.449 44.000 0.00 0.00 31.96 3.16
3300 3453 7.325660 ACATGTCACAGAAATGGATGTATTC 57.674 36.000 0.00 0.00 31.96 1.75
3409 3612 0.561184 AGAGGGGACGGGATGACATA 59.439 55.000 0.00 0.00 0.00 2.29
3476 3680 2.799371 CGTGGGAGCGGTAGAGAC 59.201 66.667 0.00 0.00 0.00 3.36
3488 3692 3.614150 GCGGTAGAGACTTGACATGTTGA 60.614 47.826 0.00 0.00 0.00 3.18
3581 3786 0.397816 AGGAGATGAAGGGACGGAGG 60.398 60.000 0.00 0.00 0.00 4.30
3584 3789 0.631753 AGATGAAGGGACGGAGGAGA 59.368 55.000 0.00 0.00 0.00 3.71
3585 3790 1.219213 AGATGAAGGGACGGAGGAGAT 59.781 52.381 0.00 0.00 0.00 2.75
3587 3792 0.687757 TGAAGGGACGGAGGAGATGG 60.688 60.000 0.00 0.00 0.00 3.51
3588 3793 2.034048 GAAGGGACGGAGGAGATGGC 62.034 65.000 0.00 0.00 0.00 4.40
3589 3794 2.444895 GGGACGGAGGAGATGGCT 60.445 66.667 0.00 0.00 0.00 4.75
3590 3795 2.066999 GGGACGGAGGAGATGGCTT 61.067 63.158 0.00 0.00 0.00 4.35
3591 3796 0.759436 GGGACGGAGGAGATGGCTTA 60.759 60.000 0.00 0.00 0.00 3.09
3594 3799 2.243810 GACGGAGGAGATGGCTTAGAT 58.756 52.381 0.00 0.00 0.00 1.98
3595 3800 2.230266 GACGGAGGAGATGGCTTAGATC 59.770 54.545 0.00 0.00 0.00 2.75
3636 3844 4.236527 AGGAGAGCCGTTGGATAATTTT 57.763 40.909 0.00 0.00 39.96 1.82
3637 3845 4.200092 AGGAGAGCCGTTGGATAATTTTC 58.800 43.478 0.00 0.00 39.96 2.29
3647 3855 6.092748 CGTTGGATAATTTTCAGGGAACTTG 58.907 40.000 0.00 0.00 40.21 3.16
3654 3862 9.305925 GATAATTTTCAGGGAACTTGCAAATAG 57.694 33.333 0.00 0.00 40.21 1.73
3656 3864 2.446435 TCAGGGAACTTGCAAATAGCC 58.554 47.619 0.00 0.00 40.69 3.93
3662 3870 0.897621 ACTTGCAAATAGCCCCAAGC 59.102 50.000 0.00 0.00 44.83 4.01
3690 3899 1.061711 GCTCTTAGCAATGCAGACGTG 59.938 52.381 8.35 0.00 41.89 4.49
3696 3905 0.795735 GCAATGCAGACGTGTCATGC 60.796 55.000 0.00 13.79 40.40 4.06
3735 3948 3.254657 ACTCTCCTGAACTTCTGAAGACG 59.745 47.826 23.36 11.96 0.00 4.18
3796 4009 4.461198 GGTTTTCTGAACCTGAGAAGGAA 58.539 43.478 0.00 0.00 37.34 3.36
3803 4016 2.262423 ACCTGAGAAGGAAACAGTGC 57.738 50.000 0.00 0.00 0.00 4.40
3824 4037 3.119602 GCTGACAAATGCATCATGACACT 60.120 43.478 16.78 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.586643 AGAGTTTTTCTGACAGAAACCACTC 59.413 40.000 33.85 33.85 44.95 3.51
7 8 5.501156 AGAGTTTTTCTGACAGAAACCACT 58.499 37.500 27.40 27.40 43.25 4.00
88 95 5.519808 AGATGAACCTCTACACATACCTCA 58.480 41.667 0.00 0.00 0.00 3.86
123 134 1.074775 ATGGACGCAAAGGGCAAGA 59.925 52.632 0.00 0.00 45.17 3.02
144 156 4.824479 TGCCACTGAATCATCTACAGAA 57.176 40.909 0.00 0.00 35.85 3.02
197 210 2.034558 CACAACCACACCAAGAATCCAC 59.965 50.000 0.00 0.00 0.00 4.02
276 289 4.927267 ATTCTTCCAGTTGGTATGGTGA 57.073 40.909 0.00 0.00 39.01 4.02
290 303 4.861462 GCTAAAAAGAGCAGCAATTCTTCC 59.139 41.667 0.00 0.00 42.36 3.46
294 307 5.051891 TCAGCTAAAAAGAGCAGCAATTC 57.948 39.130 0.00 0.00 45.43 2.17
302 315 6.428385 TGCTAAGAATCAGCTAAAAAGAGC 57.572 37.500 0.00 0.00 43.19 4.09
304 317 7.986085 ACTTGCTAAGAATCAGCTAAAAAGA 57.014 32.000 0.00 0.00 39.83 2.52
305 318 8.909671 CAAACTTGCTAAGAATCAGCTAAAAAG 58.090 33.333 0.00 0.00 39.83 2.27
306 319 7.867403 CCAAACTTGCTAAGAATCAGCTAAAAA 59.133 33.333 0.00 0.00 39.83 1.94
499 590 5.178067 CCTGCATACAAAAAGAAAGCCTTTG 59.822 40.000 0.00 0.00 43.90 2.77
571 667 3.519913 ACCTGGGAGGATAAACTTCAGAC 59.480 47.826 0.00 0.00 37.67 3.51
650 746 5.703130 GGAGTGAAAGAATTCTACTGCAAGT 59.297 40.000 18.35 3.16 41.43 3.16
690 786 7.408756 AGGCAAGAATAACTGCAAATTCATA 57.591 32.000 14.89 0.00 35.07 2.15
802 906 4.261155 GGCAAAATTTGGAGCAAAGGAAAC 60.261 41.667 7.89 0.00 36.76 2.78
862 966 1.734465 GGAAACTGTCAGAAGGCGATG 59.266 52.381 6.91 0.00 0.00 3.84
899 1026 0.105964 TGTCTTCGGTGTCCAACTGG 59.894 55.000 0.00 0.00 35.67 4.00
900 1027 1.948104 TTGTCTTCGGTGTCCAACTG 58.052 50.000 0.00 0.00 36.38 3.16
905 1032 1.963172 AGGTTTTGTCTTCGGTGTCC 58.037 50.000 0.00 0.00 0.00 4.02
911 1038 5.494632 AAAGGTGTAAGGTTTTGTCTTCG 57.505 39.130 0.00 0.00 0.00 3.79
923 1050 1.459592 CGACGCTTGGAAAGGTGTAAG 59.540 52.381 0.00 0.00 46.35 2.34
927 1054 0.878523 TGTCGACGCTTGGAAAGGTG 60.879 55.000 11.62 0.00 46.35 4.00
933 1060 0.240145 CTGTACTGTCGACGCTTGGA 59.760 55.000 11.62 0.00 0.00 3.53
1153 1283 2.461945 CGATGTGGCTCTGCTGCAG 61.462 63.158 23.31 23.31 34.04 4.41
1191 1324 4.933064 GGCTCGTCATCTCGGCCG 62.933 72.222 22.12 22.12 37.39 6.13
1215 1348 2.419297 GCTGTCCCTCGAGTTCATGAAT 60.419 50.000 12.12 0.66 0.00 2.57
1242 1375 4.008933 GTCTGCAGGCCACCGAGT 62.009 66.667 15.13 0.00 0.00 4.18
1507 1640 2.142357 CTGACCACCTCGTCGAGCAA 62.142 60.000 17.02 0.00 35.40 3.91
1512 1645 1.081376 GACACTGACCACCTCGTCG 60.081 63.158 0.00 0.00 35.40 5.12
2138 2275 0.596083 CGGATCAGTGAGCGATCACC 60.596 60.000 28.78 13.36 40.93 4.02
2142 2279 1.752358 ATGGCGGATCAGTGAGCGAT 61.752 55.000 1.64 0.00 0.00 4.58
2239 2376 0.725784 GCGCGTTGATGAACCAGTTG 60.726 55.000 8.43 0.00 0.00 3.16
2269 2406 0.181350 CCTCCACCATAGGCTTCCAC 59.819 60.000 0.00 0.00 0.00 4.02
2278 2415 3.967326 CCTTGTACATCTCCTCCACCATA 59.033 47.826 0.00 0.00 0.00 2.74
2455 2592 2.978824 GGCTCCGACTTGTAGGCA 59.021 61.111 0.00 0.00 35.95 4.75
2854 3000 2.882677 ATGCTGTGCGTCCAGGTGA 61.883 57.895 5.77 0.00 32.92 4.02
3264 3417 4.081142 TCTGTGACATGTAATTCCGGACAT 60.081 41.667 1.83 1.18 36.73 3.06
3265 3418 3.259625 TCTGTGACATGTAATTCCGGACA 59.740 43.478 1.83 0.00 0.00 4.02
3266 3419 3.857052 TCTGTGACATGTAATTCCGGAC 58.143 45.455 1.83 0.00 0.00 4.79
3267 3420 4.545208 TTCTGTGACATGTAATTCCGGA 57.455 40.909 0.00 0.00 0.00 5.14
3268 3421 5.449041 CCATTTCTGTGACATGTAATTCCGG 60.449 44.000 0.00 0.00 0.00 5.14
3269 3422 5.353956 TCCATTTCTGTGACATGTAATTCCG 59.646 40.000 0.00 0.00 0.00 4.30
3270 3423 6.757897 TCCATTTCTGTGACATGTAATTCC 57.242 37.500 0.00 0.00 0.00 3.01
3271 3424 7.765307 ACATCCATTTCTGTGACATGTAATTC 58.235 34.615 0.00 0.00 0.00 2.17
3272 3425 7.707624 ACATCCATTTCTGTGACATGTAATT 57.292 32.000 0.00 0.00 0.00 1.40
3278 3431 7.281774 GTCTGAATACATCCATTTCTGTGACAT 59.718 37.037 0.00 0.00 0.00 3.06
3292 3445 7.531198 CGTTATACTCACTCGTCTGAATACATC 59.469 40.741 0.00 0.00 0.00 3.06
3300 3453 3.400505 TGCGTTATACTCACTCGTCTG 57.599 47.619 0.00 0.00 0.00 3.51
3333 3536 4.305769 TCGAAATCGACTTAAACCCGAAA 58.694 39.130 0.58 0.00 44.22 3.46
3334 3537 3.911868 TCGAAATCGACTTAAACCCGAA 58.088 40.909 0.58 0.00 44.22 4.30
3335 3538 3.574284 TCGAAATCGACTTAAACCCGA 57.426 42.857 0.58 0.00 44.22 5.14
3353 3556 6.460399 CCCCTACTTCTTCAGTTCTTCTATCG 60.460 46.154 0.00 0.00 36.88 2.92
3358 3561 4.081365 CCTCCCCTACTTCTTCAGTTCTTC 60.081 50.000 0.00 0.00 36.88 2.87
3388 3591 2.764128 TCATCCCGTCCCCTCTGC 60.764 66.667 0.00 0.00 0.00 4.26
3455 3659 1.787057 CTCTACCGCTCCCACGCTAG 61.787 65.000 0.00 0.00 0.00 3.42
3459 3663 1.313812 AAGTCTCTACCGCTCCCACG 61.314 60.000 0.00 0.00 0.00 4.94
3476 3680 1.081892 CTCCCGCTCAACATGTCAAG 58.918 55.000 0.00 0.47 0.00 3.02
3555 3760 1.736586 CCTTCATCTCCTCCGACGG 59.263 63.158 7.84 7.84 0.00 4.79
3558 3763 0.752009 CGTCCCTTCATCTCCTCCGA 60.752 60.000 0.00 0.00 0.00 4.55
3560 3765 0.397254 TCCGTCCCTTCATCTCCTCC 60.397 60.000 0.00 0.00 0.00 4.30
3581 3786 1.337635 CCCAGCGATCTAAGCCATCTC 60.338 57.143 0.00 0.00 34.64 2.75
3584 3789 0.683973 CTCCCAGCGATCTAAGCCAT 59.316 55.000 0.00 0.00 34.64 4.40
3585 3790 1.402896 CCTCCCAGCGATCTAAGCCA 61.403 60.000 0.00 0.00 34.64 4.75
3587 3792 0.316841 CTCCTCCCAGCGATCTAAGC 59.683 60.000 0.00 0.00 0.00 3.09
3588 3793 0.965439 CCTCCTCCCAGCGATCTAAG 59.035 60.000 0.00 0.00 0.00 2.18
3589 3794 0.556258 TCCTCCTCCCAGCGATCTAA 59.444 55.000 0.00 0.00 0.00 2.10
3590 3795 0.556258 TTCCTCCTCCCAGCGATCTA 59.444 55.000 0.00 0.00 0.00 1.98
3591 3796 0.758685 CTTCCTCCTCCCAGCGATCT 60.759 60.000 0.00 0.00 0.00 2.75
3594 3799 1.045350 CATCTTCCTCCTCCCAGCGA 61.045 60.000 0.00 0.00 0.00 4.93
3595 3800 1.045350 TCATCTTCCTCCTCCCAGCG 61.045 60.000 0.00 0.00 0.00 5.18
3636 3844 2.446435 GGCTATTTGCAAGTTCCCTGA 58.554 47.619 0.00 0.00 45.15 3.86
3637 3845 1.478105 GGGCTATTTGCAAGTTCCCTG 59.522 52.381 18.60 2.45 45.15 4.45
3672 3881 2.288763 TGACACGTCTGCATTGCTAAGA 60.289 45.455 10.49 2.29 0.00 2.10
3690 3899 1.817099 CGGAGGGCAGAAGCATGAC 60.817 63.158 0.00 0.00 44.61 3.06
3696 3905 1.067821 GAGTGATACGGAGGGCAGAAG 59.932 57.143 0.00 0.00 0.00 2.85
3735 3948 1.403249 CCAGCTTGTAAATGGCAGCAC 60.403 52.381 0.00 0.00 0.00 4.40
3790 4003 4.293415 CATTTGTCAGCACTGTTTCCTTC 58.707 43.478 0.00 0.00 0.00 3.46
3796 4009 2.624364 TGATGCATTTGTCAGCACTGTT 59.376 40.909 0.00 0.00 44.49 3.16
3803 4016 4.412207 CAGTGTCATGATGCATTTGTCAG 58.588 43.478 0.00 0.00 0.00 3.51
3824 4037 4.145876 GACAAAATCTGAACATCACGCA 57.854 40.909 0.00 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.