Multiple sequence alignment - TraesCS4D01G277900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G277900 chr4D 100.000 2222 0 0 1 2222 449877067 449874846 0.000000e+00 4104.0
1 TraesCS4D01G277900 chr4D 79.292 734 80 42 691 1386 449860242 449859543 4.350000e-122 448.0
2 TraesCS4D01G277900 chr4D 89.286 280 24 1 982 1255 449739416 449739137 1.630000e-91 346.0
3 TraesCS4D01G277900 chr4A 89.245 1311 85 18 470 1752 17023745 17025027 0.000000e+00 1589.0
4 TraesCS4D01G277900 chr4A 80.919 718 89 25 614 1308 17028144 17028836 7.030000e-145 523.0
5 TraesCS4D01G277900 chr4A 87.307 323 30 6 982 1296 17256597 17256916 2.100000e-95 359.0
6 TraesCS4D01G277900 chr4A 86.068 323 33 7 982 1296 17253397 17253715 9.830000e-89 337.0
7 TraesCS4D01G277900 chr4A 85.000 320 36 5 982 1291 17032612 17032929 4.610000e-82 315.0
8 TraesCS4D01G277900 chr4A 86.056 251 25 6 1900 2150 17025082 17025322 6.090000e-66 261.0
9 TraesCS4D01G277900 chr4B 85.864 1146 94 24 476 1568 562436883 562435753 0.000000e+00 1157.0
10 TraesCS4D01G277900 chr4B 85.846 325 32 8 983 1296 562419354 562419033 1.270000e-87 333.0
11 TraesCS4D01G277900 chr4B 90.435 230 15 5 1995 2222 562435377 562435153 1.670000e-76 296.0
12 TraesCS4D01G277900 chr4B 90.141 142 12 2 1611 1752 562435753 562435614 1.360000e-42 183.0
13 TraesCS4D01G277900 chr3D 97.835 462 10 0 1 462 403949650 403950111 0.000000e+00 798.0
14 TraesCS4D01G277900 chr6D 97.835 462 9 1 1 462 60463619 60463159 0.000000e+00 797.0
15 TraesCS4D01G277900 chr6D 94.612 464 22 2 1 462 100489514 100489976 0.000000e+00 715.0
16 TraesCS4D01G277900 chr1D 97.619 462 11 0 1 462 407821636 407822097 0.000000e+00 793.0
17 TraesCS4D01G277900 chr1D 95.238 462 21 1 1 462 74410934 74411394 0.000000e+00 730.0
18 TraesCS4D01G277900 chr2D 97.807 456 10 0 1 456 629657095 629657550 0.000000e+00 787.0
19 TraesCS4D01G277900 chr2D 95.238 462 21 1 1 462 182772916 182772456 0.000000e+00 730.0
20 TraesCS4D01G277900 chr2D 87.059 85 5 4 1779 1857 406444301 406444385 8.450000e-15 91.6
21 TraesCS4D01G277900 chr2D 87.059 85 5 2 1779 1857 602264055 602264139 8.450000e-15 91.6
22 TraesCS4D01G277900 chr7D 95.671 462 19 1 1 462 478773559 478773099 0.000000e+00 741.0
23 TraesCS4D01G277900 chrUn 95.238 462 20 2 1 462 345776693 345777152 0.000000e+00 730.0
24 TraesCS4D01G277900 chr7B 84.127 126 13 3 1738 1857 412935687 412935811 5.010000e-22 115.0
25 TraesCS4D01G277900 chr2A 97.436 39 1 0 1802 1840 149459629 149459591 1.420000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G277900 chr4D 449874846 449877067 2221 True 4104.000000 4104 100.000000 1 2222 1 chr4D.!!$R3 2221
1 TraesCS4D01G277900 chr4D 449859543 449860242 699 True 448.000000 448 79.292000 691 1386 1 chr4D.!!$R2 695
2 TraesCS4D01G277900 chr4A 17023745 17032929 9184 False 672.000000 1589 85.305000 470 2150 4 chr4A.!!$F1 1680
3 TraesCS4D01G277900 chr4A 17253397 17256916 3519 False 348.000000 359 86.687500 982 1296 2 chr4A.!!$F2 314
4 TraesCS4D01G277900 chr4B 562435153 562436883 1730 True 545.333333 1157 88.813333 476 2222 3 chr4B.!!$R2 1746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 109 0.107456 ATCACCCTGCGGATGTGATC 59.893 55.0 19.19 0.0 44.21 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1854 4107 0.03779 GTGTCAGGCTTTCTCGAGCT 60.038 55.0 7.81 0.0 42.32 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.027755 CGTAGGGGCGCTATTGTG 57.972 61.111 14.77 2.13 0.00 3.33
39 40 1.594293 CGTAGGGGCGCTATTGTGG 60.594 63.158 14.77 0.00 0.00 4.17
42 43 4.506255 GGGGCGCTATTGTGGGCT 62.506 66.667 7.64 0.00 43.97 5.19
43 44 2.508928 GGGCGCTATTGTGGGCTA 59.491 61.111 7.64 0.00 43.97 3.93
45 46 0.537371 GGGCGCTATTGTGGGCTATT 60.537 55.000 7.64 0.00 43.97 1.73
46 47 1.318576 GGCGCTATTGTGGGCTATTT 58.681 50.000 7.64 0.00 43.97 1.40
47 48 1.001378 GGCGCTATTGTGGGCTATTTG 60.001 52.381 7.64 0.00 43.97 2.32
49 50 2.571212 CGCTATTGTGGGCTATTTGGA 58.429 47.619 0.00 0.00 0.00 3.53
50 51 2.290641 CGCTATTGTGGGCTATTTGGAC 59.709 50.000 0.00 0.00 0.00 4.02
52 53 2.799126 ATTGTGGGCTATTTGGACGA 57.201 45.000 0.00 0.00 0.00 4.20
53 54 1.816074 TTGTGGGCTATTTGGACGAC 58.184 50.000 0.00 0.00 0.00 4.34
54 55 0.390603 TGTGGGCTATTTGGACGACG 60.391 55.000 0.00 0.00 0.00 5.12
56 57 2.522638 GGGCTATTTGGACGACGCG 61.523 63.158 3.53 3.53 0.00 6.01
57 58 2.320044 GCTATTTGGACGACGCGC 59.680 61.111 5.73 0.00 0.00 6.86
58 59 2.449525 GCTATTTGGACGACGCGCA 61.450 57.895 5.73 0.00 0.00 6.09
60 61 0.650512 CTATTTGGACGACGCGCAAT 59.349 50.000 5.73 0.00 0.00 3.56
61 62 1.855978 CTATTTGGACGACGCGCAATA 59.144 47.619 5.73 0.03 0.00 1.90
62 63 1.080298 ATTTGGACGACGCGCAATAA 58.920 45.000 5.73 0.00 0.00 1.40
63 64 0.866427 TTTGGACGACGCGCAATAAA 59.134 45.000 5.73 0.00 0.00 1.40
65 66 1.080298 TGGACGACGCGCAATAAAAT 58.920 45.000 5.73 0.00 0.00 1.82
66 67 1.465387 TGGACGACGCGCAATAAAATT 59.535 42.857 5.73 0.00 0.00 1.82
67 68 2.671888 TGGACGACGCGCAATAAAATTA 59.328 40.909 5.73 0.00 0.00 1.40
68 69 3.024313 GGACGACGCGCAATAAAATTAC 58.976 45.455 5.73 0.00 0.00 1.89
70 71 2.345041 ACGACGCGCAATAAAATTACGA 59.655 40.909 5.73 0.00 0.00 3.43
72 73 3.957535 CGACGCGCAATAAAATTACGATT 59.042 39.130 5.73 0.00 0.00 3.34
73 74 4.144309 CGACGCGCAATAAAATTACGATTG 60.144 41.667 5.73 3.61 34.37 2.67
74 75 4.899516 ACGCGCAATAAAATTACGATTGA 58.100 34.783 5.73 0.00 33.28 2.57
75 76 4.961551 ACGCGCAATAAAATTACGATTGAG 59.038 37.500 5.73 8.03 33.28 3.02
76 77 5.194657 CGCGCAATAAAATTACGATTGAGA 58.805 37.500 8.75 0.00 33.70 3.27
77 78 5.675012 CGCGCAATAAAATTACGATTGAGAA 59.325 36.000 8.75 0.00 33.70 2.87
78 79 6.193776 CGCGCAATAAAATTACGATTGAGAAA 59.806 34.615 8.75 0.00 33.70 2.52
79 80 7.253158 CGCGCAATAAAATTACGATTGAGAAAA 60.253 33.333 8.75 0.00 33.70 2.29
80 81 8.369588 GCGCAATAAAATTACGATTGAGAAAAA 58.630 29.630 0.30 0.00 33.70 1.94
99 100 4.718940 AAAATTTCCTAATCACCCTGCG 57.281 40.909 0.00 0.00 0.00 5.18
100 101 2.348411 ATTTCCTAATCACCCTGCGG 57.652 50.000 0.00 0.00 0.00 5.69
101 102 1.281419 TTTCCTAATCACCCTGCGGA 58.719 50.000 0.00 0.00 0.00 5.54
102 103 1.507140 TTCCTAATCACCCTGCGGAT 58.493 50.000 0.00 0.00 0.00 4.18
104 105 0.469917 CCTAATCACCCTGCGGATGT 59.530 55.000 0.00 0.00 0.00 3.06
105 106 1.586422 CTAATCACCCTGCGGATGTG 58.414 55.000 8.42 8.42 0.00 3.21
106 107 1.138859 CTAATCACCCTGCGGATGTGA 59.861 52.381 16.88 16.88 42.65 3.58
107 108 2.224821 ATCACCCTGCGGATGTGAT 58.775 52.632 19.19 19.19 43.10 3.06
108 109 0.107456 ATCACCCTGCGGATGTGATC 59.893 55.000 19.19 0.00 44.21 2.92
109 110 0.977627 TCACCCTGCGGATGTGATCT 60.978 55.000 12.24 0.00 34.28 2.75
111 112 0.179000 ACCCTGCGGATGTGATCTTC 59.821 55.000 0.00 0.00 0.00 2.87
112 113 0.178767 CCCTGCGGATGTGATCTTCA 59.821 55.000 0.00 0.00 0.00 3.02
114 115 2.358957 CCTGCGGATGTGATCTTCAAA 58.641 47.619 0.00 0.00 0.00 2.69
115 116 2.947652 CCTGCGGATGTGATCTTCAAAT 59.052 45.455 0.00 0.00 0.00 2.32
117 118 3.346315 TGCGGATGTGATCTTCAAATGT 58.654 40.909 0.00 0.00 0.00 2.71
118 119 3.374988 TGCGGATGTGATCTTCAAATGTC 59.625 43.478 0.00 0.00 0.00 3.06
119 120 3.374988 GCGGATGTGATCTTCAAATGTCA 59.625 43.478 0.00 0.00 0.00 3.58
121 122 4.201851 CGGATGTGATCTTCAAATGTCACC 60.202 45.833 0.00 0.00 40.07 4.02
124 125 6.071728 GGATGTGATCTTCAAATGTCACCTTT 60.072 38.462 0.00 0.00 40.07 3.11
125 126 6.713762 TGTGATCTTCAAATGTCACCTTTT 57.286 33.333 0.00 0.00 40.07 2.27
127 128 6.547141 TGTGATCTTCAAATGTCACCTTTTCT 59.453 34.615 0.00 0.00 40.07 2.52
128 129 7.068593 TGTGATCTTCAAATGTCACCTTTTCTT 59.931 33.333 0.00 0.00 40.07 2.52
129 130 8.567948 GTGATCTTCAAATGTCACCTTTTCTTA 58.432 33.333 0.00 0.00 35.98 2.10
131 132 7.873719 TCTTCAAATGTCACCTTTTCTTACA 57.126 32.000 0.00 0.00 0.00 2.41
133 134 7.773224 TCTTCAAATGTCACCTTTTCTTACAGA 59.227 33.333 0.00 0.00 0.00 3.41
134 135 7.259290 TCAAATGTCACCTTTTCTTACAGAC 57.741 36.000 0.00 0.00 0.00 3.51
135 136 7.054124 TCAAATGTCACCTTTTCTTACAGACT 58.946 34.615 0.00 0.00 0.00 3.24
136 137 7.556275 TCAAATGTCACCTTTTCTTACAGACTT 59.444 33.333 0.00 0.00 0.00 3.01
138 139 5.123227 TGTCACCTTTTCTTACAGACTTGG 58.877 41.667 0.00 0.00 0.00 3.61
139 140 5.104693 TGTCACCTTTTCTTACAGACTTGGA 60.105 40.000 0.00 0.00 0.00 3.53
140 141 5.236695 GTCACCTTTTCTTACAGACTTGGAC 59.763 44.000 0.00 0.00 0.00 4.02
141 142 5.130477 TCACCTTTTCTTACAGACTTGGACT 59.870 40.000 0.00 0.00 0.00 3.85
142 143 5.467063 CACCTTTTCTTACAGACTTGGACTC 59.533 44.000 0.00 0.00 0.00 3.36
144 145 3.936372 TTCTTACAGACTTGGACTCCG 57.064 47.619 0.00 0.00 0.00 4.63
145 146 1.544691 TCTTACAGACTTGGACTCCGC 59.455 52.381 0.00 0.00 0.00 5.54
146 147 1.546476 CTTACAGACTTGGACTCCGCT 59.454 52.381 0.00 0.00 0.00 5.52
147 148 0.888619 TACAGACTTGGACTCCGCTG 59.111 55.000 0.00 0.00 0.00 5.18
148 149 1.079543 CAGACTTGGACTCCGCTGG 60.080 63.158 0.00 0.00 0.00 4.85
151 152 3.003173 CTTGGACTCCGCTGGGGA 61.003 66.667 13.26 13.26 44.68 4.81
152 153 2.528127 TTGGACTCCGCTGGGGAA 60.528 61.111 14.81 0.00 46.61 3.97
153 154 2.527951 CTTGGACTCCGCTGGGGAAG 62.528 65.000 14.81 10.92 46.61 3.46
154 155 3.787001 GGACTCCGCTGGGGAAGG 61.787 72.222 14.81 6.68 46.61 3.46
155 156 2.683933 GACTCCGCTGGGGAAGGA 60.684 66.667 14.81 0.00 46.61 3.36
162 163 3.854669 CTGGGGAAGGAGCGCGAT 61.855 66.667 12.10 1.23 0.00 4.58
180 181 1.447314 TGCTGAGCGCATGTCAGAG 60.447 57.895 24.54 4.95 45.47 3.35
181 182 2.172372 GCTGAGCGCATGTCAGAGG 61.172 63.158 24.54 4.31 43.65 3.69
182 183 2.125391 TGAGCGCATGTCAGAGGC 60.125 61.111 11.47 0.00 0.00 4.70
184 185 3.670637 GAGCGCATGTCAGAGGCCA 62.671 63.158 11.47 0.00 0.00 5.36
185 186 2.515523 GCGCATGTCAGAGGCCAT 60.516 61.111 5.01 0.00 0.00 4.40
186 187 2.831366 GCGCATGTCAGAGGCCATG 61.831 63.158 5.01 2.98 41.08 3.66
187 188 2.184830 CGCATGTCAGAGGCCATGG 61.185 63.158 7.63 7.63 39.06 3.66
190 191 4.783621 TGTCAGAGGCCATGGCGC 62.784 66.667 29.90 23.34 43.06 6.53
194 195 4.181010 AGAGGCCATGGCGCGAAT 62.181 61.111 29.90 13.26 43.06 3.34
195 196 3.654020 GAGGCCATGGCGCGAATC 61.654 66.667 29.90 17.68 43.06 2.52
196 197 4.488136 AGGCCATGGCGCGAATCA 62.488 61.111 29.90 4.76 43.06 2.57
197 198 3.517140 GGCCATGGCGCGAATCAA 61.517 61.111 29.90 0.00 43.06 2.57
198 199 2.025156 GCCATGGCGCGAATCAAG 59.975 61.111 23.48 1.19 0.00 3.02
201 202 1.091771 CCATGGCGCGAATCAAGACT 61.092 55.000 12.10 0.00 0.00 3.24
203 204 2.138320 CATGGCGCGAATCAAGACTAT 58.862 47.619 12.10 0.00 0.00 2.12
206 207 1.538204 GGCGCGAATCAAGACTATCCA 60.538 52.381 12.10 0.00 0.00 3.41
207 208 1.789464 GCGCGAATCAAGACTATCCAG 59.211 52.381 12.10 0.00 0.00 3.86
208 209 2.398498 CGCGAATCAAGACTATCCAGG 58.602 52.381 0.00 0.00 0.00 4.45
209 210 2.223829 CGCGAATCAAGACTATCCAGGT 60.224 50.000 0.00 0.00 0.00 4.00
210 211 3.126831 GCGAATCAAGACTATCCAGGTG 58.873 50.000 0.00 0.00 0.00 4.00
213 214 4.987285 CGAATCAAGACTATCCAGGTGATG 59.013 45.833 0.00 0.00 34.76 3.07
222 223 3.344703 CCAGGTGATGGCAAGACAA 57.655 52.632 0.00 0.00 43.83 3.18
224 225 1.271543 CCAGGTGATGGCAAGACAAGA 60.272 52.381 0.00 0.00 43.83 3.02
226 227 1.701847 AGGTGATGGCAAGACAAGACT 59.298 47.619 0.00 0.00 0.00 3.24
227 228 2.079925 GGTGATGGCAAGACAAGACTC 58.920 52.381 0.00 0.00 0.00 3.36
228 229 1.728971 GTGATGGCAAGACAAGACTCG 59.271 52.381 0.00 0.00 0.00 4.18
229 230 1.618343 TGATGGCAAGACAAGACTCGA 59.382 47.619 0.00 0.00 0.00 4.04
231 232 0.318699 TGGCAAGACAAGACTCGACG 60.319 55.000 0.00 0.00 0.00 5.12
234 235 1.335142 GCAAGACAAGACTCGACGACT 60.335 52.381 0.00 0.00 0.00 4.18
235 236 2.576406 CAAGACAAGACTCGACGACTC 58.424 52.381 0.00 0.00 0.00 3.36
236 237 0.791422 AGACAAGACTCGACGACTCG 59.209 55.000 0.00 0.00 41.65 4.18
237 238 0.788995 GACAAGACTCGACGACTCGA 59.211 55.000 5.20 0.00 46.85 4.04
243 244 4.998294 TCGACGACTCGATGATGC 57.002 55.556 5.20 0.00 44.14 3.91
244 245 2.394604 TCGACGACTCGATGATGCT 58.605 52.632 5.20 0.00 44.14 3.79
245 246 0.733150 TCGACGACTCGATGATGCTT 59.267 50.000 5.20 0.00 44.14 3.91
246 247 1.132453 TCGACGACTCGATGATGCTTT 59.868 47.619 5.20 0.00 44.14 3.51
247 248 1.920574 CGACGACTCGATGATGCTTTT 59.079 47.619 5.20 0.00 43.06 2.27
248 249 2.284684 CGACGACTCGATGATGCTTTTG 60.285 50.000 5.20 0.00 43.06 2.44
250 251 2.002586 CGACTCGATGATGCTTTTGGT 58.997 47.619 0.00 0.00 0.00 3.67
251 252 2.222886 CGACTCGATGATGCTTTTGGTG 60.223 50.000 0.00 0.00 0.00 4.17
252 253 1.470098 ACTCGATGATGCTTTTGGTGC 59.530 47.619 0.00 0.00 0.00 5.01
253 254 0.810648 TCGATGATGCTTTTGGTGCC 59.189 50.000 0.00 0.00 0.00 5.01
254 255 0.813184 CGATGATGCTTTTGGTGCCT 59.187 50.000 0.00 0.00 0.00 4.75
255 256 1.203052 CGATGATGCTTTTGGTGCCTT 59.797 47.619 0.00 0.00 0.00 4.35
256 257 2.733227 CGATGATGCTTTTGGTGCCTTC 60.733 50.000 0.00 0.00 0.00 3.46
257 258 0.597568 TGATGCTTTTGGTGCCTTCG 59.402 50.000 0.00 0.00 0.00 3.79
259 260 0.827507 ATGCTTTTGGTGCCTTCGGT 60.828 50.000 0.00 0.00 0.00 4.69
260 261 1.007387 GCTTTTGGTGCCTTCGGTG 60.007 57.895 0.00 0.00 0.00 4.94
261 262 1.659794 CTTTTGGTGCCTTCGGTGG 59.340 57.895 0.00 0.00 0.00 4.61
262 263 0.821711 CTTTTGGTGCCTTCGGTGGA 60.822 55.000 0.00 0.00 0.00 4.02
263 264 0.178975 TTTTGGTGCCTTCGGTGGAT 60.179 50.000 0.00 0.00 0.00 3.41
264 265 0.893270 TTTGGTGCCTTCGGTGGATG 60.893 55.000 0.00 0.00 0.00 3.51
266 267 1.303317 GGTGCCTTCGGTGGATGTT 60.303 57.895 0.00 0.00 0.00 2.71
267 268 0.893727 GGTGCCTTCGGTGGATGTTT 60.894 55.000 0.00 0.00 0.00 2.83
268 269 0.521735 GTGCCTTCGGTGGATGTTTC 59.478 55.000 0.00 0.00 0.00 2.78
269 270 0.109532 TGCCTTCGGTGGATGTTTCA 59.890 50.000 0.00 0.00 0.00 2.69
270 271 1.271871 TGCCTTCGGTGGATGTTTCAT 60.272 47.619 0.00 0.00 0.00 2.57
271 272 1.133025 GCCTTCGGTGGATGTTTCATG 59.867 52.381 0.00 0.00 0.00 3.07
276 277 4.545208 TCGGTGGATGTTTCATGTTAGA 57.455 40.909 0.00 0.00 0.00 2.10
277 278 5.097742 TCGGTGGATGTTTCATGTTAGAT 57.902 39.130 0.00 0.00 0.00 1.98
278 279 6.228616 TCGGTGGATGTTTCATGTTAGATA 57.771 37.500 0.00 0.00 0.00 1.98
280 281 5.466728 CGGTGGATGTTTCATGTTAGATAGG 59.533 44.000 0.00 0.00 0.00 2.57
281 282 6.357367 GGTGGATGTTTCATGTTAGATAGGT 58.643 40.000 0.00 0.00 0.00 3.08
282 283 6.483640 GGTGGATGTTTCATGTTAGATAGGTC 59.516 42.308 0.00 0.00 0.00 3.85
283 284 7.275920 GTGGATGTTTCATGTTAGATAGGTCT 58.724 38.462 0.00 0.00 38.52 3.85
285 286 7.987458 TGGATGTTTCATGTTAGATAGGTCTTC 59.013 37.037 0.00 0.00 35.87 2.87
286 287 8.207545 GGATGTTTCATGTTAGATAGGTCTTCT 58.792 37.037 0.00 0.00 35.87 2.85
288 289 6.818644 TGTTTCATGTTAGATAGGTCTTCTGC 59.181 38.462 0.00 0.00 35.87 4.26
290 291 4.645136 TCATGTTAGATAGGTCTTCTGCGT 59.355 41.667 0.00 0.00 35.87 5.24
291 292 5.127194 TCATGTTAGATAGGTCTTCTGCGTT 59.873 40.000 0.00 0.00 35.87 4.84
292 293 4.744570 TGTTAGATAGGTCTTCTGCGTTG 58.255 43.478 0.00 0.00 35.87 4.10
293 294 2.969628 AGATAGGTCTTCTGCGTTGG 57.030 50.000 0.00 0.00 0.00 3.77
295 296 3.034635 AGATAGGTCTTCTGCGTTGGAT 58.965 45.455 0.00 0.00 0.00 3.41
297 298 0.976641 AGGTCTTCTGCGTTGGATGA 59.023 50.000 0.00 0.00 0.00 2.92
298 299 1.066573 AGGTCTTCTGCGTTGGATGAG 60.067 52.381 0.00 0.00 0.00 2.90
299 300 1.338200 GGTCTTCTGCGTTGGATGAGT 60.338 52.381 0.00 0.00 0.00 3.41
300 301 2.417719 GTCTTCTGCGTTGGATGAGTT 58.582 47.619 0.00 0.00 0.00 3.01
301 302 2.158449 GTCTTCTGCGTTGGATGAGTTG 59.842 50.000 0.00 0.00 0.00 3.16
302 303 2.146342 CTTCTGCGTTGGATGAGTTGT 58.854 47.619 0.00 0.00 0.00 3.32
303 304 3.006430 TCTTCTGCGTTGGATGAGTTGTA 59.994 43.478 0.00 0.00 0.00 2.41
304 305 3.610040 TCTGCGTTGGATGAGTTGTAT 57.390 42.857 0.00 0.00 0.00 2.29
305 306 3.261580 TCTGCGTTGGATGAGTTGTATG 58.738 45.455 0.00 0.00 0.00 2.39
306 307 2.352651 CTGCGTTGGATGAGTTGTATGG 59.647 50.000 0.00 0.00 0.00 2.74
307 308 2.290008 TGCGTTGGATGAGTTGTATGGT 60.290 45.455 0.00 0.00 0.00 3.55
308 309 2.095853 GCGTTGGATGAGTTGTATGGTG 59.904 50.000 0.00 0.00 0.00 4.17
311 312 4.932799 CGTTGGATGAGTTGTATGGTGTAA 59.067 41.667 0.00 0.00 0.00 2.41
312 313 5.584649 CGTTGGATGAGTTGTATGGTGTAAT 59.415 40.000 0.00 0.00 0.00 1.89
314 315 6.061022 TGGATGAGTTGTATGGTGTAATGT 57.939 37.500 0.00 0.00 0.00 2.71
316 317 6.374053 TGGATGAGTTGTATGGTGTAATGTTG 59.626 38.462 0.00 0.00 0.00 3.33
317 318 5.621197 TGAGTTGTATGGTGTAATGTTGC 57.379 39.130 0.00 0.00 0.00 4.17
318 319 4.457603 TGAGTTGTATGGTGTAATGTTGCC 59.542 41.667 0.00 0.00 0.00 4.52
319 320 4.662278 AGTTGTATGGTGTAATGTTGCCT 58.338 39.130 0.00 0.00 0.00 4.75
323 324 0.878416 TGGTGTAATGTTGCCTTCGC 59.122 50.000 0.00 0.00 0.00 4.70
326 327 0.515127 TGTAATGTTGCCTTCGCGTG 59.485 50.000 5.77 0.00 38.08 5.34
327 328 0.179200 GTAATGTTGCCTTCGCGTGG 60.179 55.000 5.77 11.37 38.08 4.94
329 330 1.169661 AATGTTGCCTTCGCGTGGAA 61.170 50.000 21.17 10.72 38.08 3.53
331 332 2.975799 TTGCCTTCGCGTGGAACC 60.976 61.111 21.17 7.36 38.08 3.62
332 333 3.469863 TTGCCTTCGCGTGGAACCT 62.470 57.895 21.17 0.00 38.08 3.50
333 334 2.668550 GCCTTCGCGTGGAACCTT 60.669 61.111 21.17 0.00 0.00 3.50
335 336 1.574428 CCTTCGCGTGGAACCTTTG 59.426 57.895 5.77 0.00 0.00 2.77
338 339 2.051345 CGCGTGGAACCTTTGTGC 60.051 61.111 0.00 0.00 0.00 4.57
340 341 1.008538 GCGTGGAACCTTTGTGCTG 60.009 57.895 0.00 0.00 0.00 4.41
341 342 1.724582 GCGTGGAACCTTTGTGCTGT 61.725 55.000 0.00 0.00 0.00 4.40
342 343 0.738389 CGTGGAACCTTTGTGCTGTT 59.262 50.000 0.00 0.00 0.00 3.16
346 347 3.096092 TGGAACCTTTGTGCTGTTTTCT 58.904 40.909 0.00 0.00 0.00 2.52
347 348 3.119173 TGGAACCTTTGTGCTGTTTTCTG 60.119 43.478 0.00 0.00 0.00 3.02
349 350 3.782889 ACCTTTGTGCTGTTTTCTGTC 57.217 42.857 0.00 0.00 0.00 3.51
350 351 2.097466 ACCTTTGTGCTGTTTTCTGTCG 59.903 45.455 0.00 0.00 0.00 4.35
353 354 1.295792 TGTGCTGTTTTCTGTCGTCC 58.704 50.000 0.00 0.00 0.00 4.79
355 356 1.527311 GTGCTGTTTTCTGTCGTCCTC 59.473 52.381 0.00 0.00 0.00 3.71
356 357 1.412710 TGCTGTTTTCTGTCGTCCTCT 59.587 47.619 0.00 0.00 0.00 3.69
357 358 2.158957 TGCTGTTTTCTGTCGTCCTCTT 60.159 45.455 0.00 0.00 0.00 2.85
358 359 2.221981 GCTGTTTTCTGTCGTCCTCTTG 59.778 50.000 0.00 0.00 0.00 3.02
359 360 2.802816 CTGTTTTCTGTCGTCCTCTTGG 59.197 50.000 0.00 0.00 0.00 3.61
360 361 2.432874 TGTTTTCTGTCGTCCTCTTGGA 59.567 45.455 0.00 0.00 40.69 3.53
371 372 1.059913 CCTCTTGGACTGAACCTGGT 58.940 55.000 0.00 0.00 34.57 4.00
372 373 1.421646 CCTCTTGGACTGAACCTGGTT 59.578 52.381 12.82 12.82 34.57 3.67
373 374 2.158608 CCTCTTGGACTGAACCTGGTTT 60.159 50.000 14.28 0.00 34.57 3.27
374 375 3.142174 CTCTTGGACTGAACCTGGTTTC 58.858 50.000 14.28 7.35 0.00 2.78
377 378 1.239347 GGACTGAACCTGGTTTCTGC 58.761 55.000 14.28 1.10 0.00 4.26
378 379 1.202818 GGACTGAACCTGGTTTCTGCT 60.203 52.381 14.28 0.00 0.00 4.24
382 383 3.381590 ACTGAACCTGGTTTCTGCTTTTC 59.618 43.478 14.28 0.00 0.00 2.29
383 384 3.631250 TGAACCTGGTTTCTGCTTTTCT 58.369 40.909 14.28 0.00 0.00 2.52
384 385 3.381272 TGAACCTGGTTTCTGCTTTTCTG 59.619 43.478 14.28 0.00 0.00 3.02
389 390 2.430332 TGGTTTCTGCTTTTCTGGGTTG 59.570 45.455 0.00 0.00 0.00 3.77
391 392 3.634910 GGTTTCTGCTTTTCTGGGTTGTA 59.365 43.478 0.00 0.00 0.00 2.41
392 393 4.098807 GGTTTCTGCTTTTCTGGGTTGTAA 59.901 41.667 0.00 0.00 0.00 2.41
393 394 4.911514 TTCTGCTTTTCTGGGTTGTAAC 57.088 40.909 0.00 0.00 0.00 2.50
395 396 4.532834 TCTGCTTTTCTGGGTTGTAACTT 58.467 39.130 0.00 0.00 0.00 2.66
396 397 4.338118 TCTGCTTTTCTGGGTTGTAACTTG 59.662 41.667 0.00 0.00 0.00 3.16
397 398 3.181480 TGCTTTTCTGGGTTGTAACTTGC 60.181 43.478 0.00 0.00 0.00 4.01
398 399 3.068165 GCTTTTCTGGGTTGTAACTTGCT 59.932 43.478 0.00 0.00 0.00 3.91
399 400 4.610945 CTTTTCTGGGTTGTAACTTGCTG 58.389 43.478 0.00 0.00 0.00 4.41
400 401 3.569194 TTCTGGGTTGTAACTTGCTGA 57.431 42.857 0.00 0.00 0.00 4.26
402 403 3.211045 TCTGGGTTGTAACTTGCTGAAC 58.789 45.455 0.00 0.00 0.00 3.18
403 404 3.118038 TCTGGGTTGTAACTTGCTGAACT 60.118 43.478 0.00 0.00 0.00 3.01
404 405 4.101898 TCTGGGTTGTAACTTGCTGAACTA 59.898 41.667 0.00 0.00 0.00 2.24
405 406 4.385825 TGGGTTGTAACTTGCTGAACTAG 58.614 43.478 0.00 0.00 0.00 2.57
406 407 4.141574 TGGGTTGTAACTTGCTGAACTAGT 60.142 41.667 0.00 0.00 35.76 2.57
407 408 4.213482 GGGTTGTAACTTGCTGAACTAGTG 59.787 45.833 0.00 0.00 34.40 2.74
408 409 4.319549 GGTTGTAACTTGCTGAACTAGTGC 60.320 45.833 0.00 0.00 34.40 4.40
410 411 2.938956 AACTTGCTGAACTAGTGCCT 57.061 45.000 0.00 0.00 34.40 4.75
411 412 2.175878 ACTTGCTGAACTAGTGCCTG 57.824 50.000 0.00 0.00 32.80 4.85
414 415 0.610174 TGCTGAACTAGTGCCTGAGG 59.390 55.000 0.00 0.00 0.00 3.86
415 416 0.107945 GCTGAACTAGTGCCTGAGGG 60.108 60.000 0.00 0.00 0.00 4.30
439 440 6.727569 CTTTATTAATTTAAAGCCGGACGC 57.272 37.500 5.05 0.00 33.69 5.19
440 441 2.810028 TTAATTTAAAGCCGGACGCG 57.190 45.000 5.05 3.53 44.76 6.01
444 445 0.243365 TTTAAAGCCGGACGCGTCTA 59.757 50.000 35.50 18.18 44.76 2.59
445 446 0.179156 TTAAAGCCGGACGCGTCTAG 60.179 55.000 35.50 28.02 44.76 2.43
456 457 3.540083 GCGTCTAGCGTTTTCGTTC 57.460 52.632 8.08 0.00 46.03 3.95
458 459 1.411394 CGTCTAGCGTTTTCGTTCCA 58.589 50.000 0.00 0.00 46.03 3.53
459 460 1.788308 CGTCTAGCGTTTTCGTTCCAA 59.212 47.619 0.00 0.00 46.03 3.53
461 462 3.302610 CGTCTAGCGTTTTCGTTCCAAAA 60.303 43.478 0.00 0.00 46.03 2.44
463 464 5.209977 GTCTAGCGTTTTCGTTCCAAAATT 58.790 37.500 0.00 0.00 46.03 1.82
464 465 5.684184 GTCTAGCGTTTTCGTTCCAAAATTT 59.316 36.000 0.00 0.00 46.03 1.82
466 467 5.788055 AGCGTTTTCGTTCCAAAATTTTT 57.212 30.435 0.00 0.00 46.03 1.94
572 574 3.127895 GCAGCACTATAGGTCGATCTAGG 59.872 52.174 11.74 8.93 0.00 3.02
586 588 3.429547 CGATCTAGGGGCCTAATTGATCG 60.430 52.174 23.42 23.42 40.87 3.69
629 636 8.876275 AACAGTACGAAGTGTTCAAACTTATA 57.124 30.769 0.00 0.00 44.28 0.98
630 637 8.876275 ACAGTACGAAGTGTTCAAACTTATAA 57.124 30.769 0.00 0.00 45.73 0.98
631 638 8.975439 ACAGTACGAAGTGTTCAAACTTATAAG 58.025 33.333 11.05 11.05 45.73 1.73
632 639 9.188588 CAGTACGAAGTGTTCAAACTTATAAGA 57.811 33.333 19.38 0.00 45.73 2.10
633 640 9.408069 AGTACGAAGTGTTCAAACTTATAAGAG 57.592 33.333 19.38 8.44 45.73 2.85
645 652 1.640917 TATAAGAGATGGACCGGGCC 58.359 55.000 23.70 23.70 0.00 5.80
691 698 1.931172 GTGTCCGATTTACACGATGGG 59.069 52.381 0.00 0.00 38.03 4.00
692 699 0.935196 GTCCGATTTACACGATGGGC 59.065 55.000 0.00 0.00 0.00 5.36
774 789 3.054802 GGTCTCCATCTCCATCAGTTTGT 60.055 47.826 0.00 0.00 0.00 2.83
794 816 6.773976 TTGTGACTTTTCTCTTTCAACCAT 57.226 33.333 0.00 0.00 0.00 3.55
796 818 8.463930 TTGTGACTTTTCTCTTTCAACCATAT 57.536 30.769 0.00 0.00 0.00 1.78
1279 3518 4.883006 TGATACATGTACATGCTGCACATT 59.117 37.500 31.19 14.60 42.39 2.71
1308 3547 6.758886 AGATAGAGTTCGTGTTCATTGATTCC 59.241 38.462 0.00 0.00 0.00 3.01
1339 3579 7.611467 TCTTCAATTGTAGTGATTACATGGCTT 59.389 33.333 11.33 0.00 41.72 4.35
1343 3583 1.668419 AGTGATTACATGGCTTCCGC 58.332 50.000 0.00 0.00 0.00 5.54
1344 3584 4.597051 GTAGTGATTACATGGCTTCCGCC 61.597 52.174 0.00 0.00 43.16 6.13
1395 3637 7.874528 TCAGGTTTAGTTAGTTTTAGTACAGGC 59.125 37.037 0.00 0.00 0.00 4.85
1396 3638 7.876582 CAGGTTTAGTTAGTTTTAGTACAGGCT 59.123 37.037 0.00 0.00 0.00 4.58
1397 3639 9.093458 AGGTTTAGTTAGTTTTAGTACAGGCTA 57.907 33.333 0.00 0.00 0.00 3.93
1398 3640 9.144747 GGTTTAGTTAGTTTTAGTACAGGCTAC 57.855 37.037 0.00 0.00 0.00 3.58
1399 3641 9.696917 GTTTAGTTAGTTTTAGTACAGGCTACA 57.303 33.333 0.00 0.00 0.00 2.74
1401 3643 6.932947 AGTTAGTTTTAGTACAGGCTACAGG 58.067 40.000 0.00 0.00 0.00 4.00
1406 3648 6.844917 AGTTTTAGTACAGGCTACAGGGATAT 59.155 38.462 0.00 0.00 0.00 1.63
1407 3649 6.665992 TTTAGTACAGGCTACAGGGATATG 57.334 41.667 0.00 0.00 0.00 1.78
1408 3650 2.900546 AGTACAGGCTACAGGGATATGC 59.099 50.000 0.00 0.00 0.00 3.14
1409 3651 1.806496 ACAGGCTACAGGGATATGCA 58.194 50.000 0.00 0.00 0.00 3.96
1435 3677 1.404748 GCAGTCTTAGACGTAGGTCCC 59.595 57.143 11.83 0.00 44.54 4.46
1440 3682 3.064134 GTCTTAGACGTAGGTCCCGTAAC 59.936 52.174 11.83 1.79 44.54 2.50
1452 3694 4.718276 AGGTCCCGTAACCAAGTTGTATAT 59.282 41.667 1.45 0.00 42.12 0.86
1453 3695 5.898972 AGGTCCCGTAACCAAGTTGTATATA 59.101 40.000 1.45 0.00 42.12 0.86
1454 3696 6.041296 AGGTCCCGTAACCAAGTTGTATATAG 59.959 42.308 1.45 0.00 42.12 1.31
1455 3697 6.183360 GGTCCCGTAACCAAGTTGTATATAGT 60.183 42.308 1.45 0.00 39.27 2.12
1536 3782 9.624697 TGTTTGCTATTGATAAATTGTCTGAAC 57.375 29.630 0.00 0.00 0.00 3.18
1577 3830 2.640332 ACTTTGGGAGAGAAGAAGGGAC 59.360 50.000 0.00 0.00 0.00 4.46
1630 3883 1.429825 CGACGCAGCTAGCTACTGT 59.570 57.895 18.86 15.74 42.61 3.55
1631 3884 0.590230 CGACGCAGCTAGCTACTGTC 60.590 60.000 18.86 21.75 42.61 3.51
1704 3957 1.228124 TTTGTGGTGGAAGGCGAGG 60.228 57.895 0.00 0.00 0.00 4.63
1753 4006 3.702048 GCTCGGGGTGTGTGGCTA 61.702 66.667 0.00 0.00 0.00 3.93
1754 4007 3.031417 GCTCGGGGTGTGTGGCTAT 62.031 63.158 0.00 0.00 0.00 2.97
1755 4008 1.682451 GCTCGGGGTGTGTGGCTATA 61.682 60.000 0.00 0.00 0.00 1.31
1756 4009 0.104304 CTCGGGGTGTGTGGCTATAC 59.896 60.000 0.00 0.00 0.00 1.47
1757 4010 1.145377 CGGGGTGTGTGGCTATACC 59.855 63.158 0.00 0.00 39.84 2.73
1758 4011 1.335132 CGGGGTGTGTGGCTATACCT 61.335 60.000 7.81 0.00 40.22 3.08
1759 4012 0.180406 GGGGTGTGTGGCTATACCTG 59.820 60.000 7.81 0.00 40.22 4.00
1762 4015 0.463833 GTGTGTGGCTATACCTGGGC 60.464 60.000 0.00 0.00 40.22 5.36
1763 4016 0.912006 TGTGTGGCTATACCTGGGCA 60.912 55.000 0.00 0.00 40.22 5.36
1764 4017 0.474184 GTGTGGCTATACCTGGGCAT 59.526 55.000 0.00 0.00 40.52 4.40
1765 4018 1.697432 GTGTGGCTATACCTGGGCATA 59.303 52.381 0.00 0.00 40.52 3.14
1766 4019 2.305927 GTGTGGCTATACCTGGGCATAT 59.694 50.000 0.00 0.00 40.52 1.78
1768 4021 2.840651 GTGGCTATACCTGGGCATATCT 59.159 50.000 0.00 0.00 40.52 1.98
1769 4022 3.107601 TGGCTATACCTGGGCATATCTC 58.892 50.000 0.00 0.00 40.22 2.75
1770 4023 2.101582 GGCTATACCTGGGCATATCTCG 59.898 54.545 0.00 0.00 34.51 4.04
1773 4026 1.192146 TACCTGGGCATATCTCGGGC 61.192 60.000 0.00 0.00 0.00 6.13
1778 4031 1.668151 GGCATATCTCGGGCCGTTC 60.668 63.158 27.32 0.00 38.04 3.95
1808 4061 4.475051 AAAAACCCGTTGCTAAAAACCT 57.525 36.364 0.00 0.00 0.00 3.50
1809 4062 5.595257 AAAAACCCGTTGCTAAAAACCTA 57.405 34.783 0.00 0.00 0.00 3.08
1810 4063 4.841443 AAACCCGTTGCTAAAAACCTAG 57.159 40.909 0.00 0.00 0.00 3.02
1811 4064 2.786777 ACCCGTTGCTAAAAACCTAGG 58.213 47.619 7.41 7.41 0.00 3.02
1812 4065 1.471287 CCCGTTGCTAAAAACCTAGGC 59.529 52.381 9.30 0.00 0.00 3.93
1813 4066 1.471287 CCGTTGCTAAAAACCTAGGCC 59.529 52.381 9.30 0.00 0.00 5.19
1814 4067 1.471287 CGTTGCTAAAAACCTAGGCCC 59.529 52.381 9.30 0.00 0.00 5.80
1815 4068 1.471287 GTTGCTAAAAACCTAGGCCCG 59.529 52.381 9.30 0.00 0.00 6.13
1816 4069 0.985760 TGCTAAAAACCTAGGCCCGA 59.014 50.000 9.30 0.00 0.00 5.14
1817 4070 1.065709 TGCTAAAAACCTAGGCCCGAG 60.066 52.381 9.30 0.00 0.00 4.63
1818 4071 1.664873 CTAAAAACCTAGGCCCGAGC 58.335 55.000 9.30 0.00 38.76 5.03
1847 4100 2.080286 CCATCGGGCCTACTAAATCG 57.920 55.000 0.84 0.00 0.00 3.34
1848 4101 1.337823 CCATCGGGCCTACTAAATCGG 60.338 57.143 0.84 0.00 0.00 4.18
1849 4102 0.974383 ATCGGGCCTACTAAATCGGG 59.026 55.000 0.84 0.00 0.00 5.14
1850 4103 1.301479 CGGGCCTACTAAATCGGGC 60.301 63.158 0.84 0.00 43.42 6.13
1852 4105 4.794199 GCCTACTAAATCGGGCCC 57.206 61.111 13.57 13.57 38.77 5.80
1853 4106 1.301479 GCCTACTAAATCGGGCCCG 60.301 63.158 39.13 39.13 38.77 6.13
1864 4117 3.771160 GGGCCCGAGCTCGAGAAA 61.771 66.667 36.59 0.00 43.02 2.52
1865 4118 2.202810 GGCCCGAGCTCGAGAAAG 60.203 66.667 36.59 19.16 43.02 2.62
1866 4119 2.888051 GCCCGAGCTCGAGAAAGC 60.888 66.667 36.59 24.31 43.02 3.51
1867 4120 2.202810 CCCGAGCTCGAGAAAGCC 60.203 66.667 36.59 0.00 43.56 4.35
1868 4121 2.716017 CCCGAGCTCGAGAAAGCCT 61.716 63.158 36.59 2.34 43.56 4.58
1869 4122 1.518133 CCGAGCTCGAGAAAGCCTG 60.518 63.158 36.59 13.10 43.56 4.85
1870 4123 1.508545 CGAGCTCGAGAAAGCCTGA 59.491 57.895 32.06 0.00 43.56 3.86
1871 4124 0.800300 CGAGCTCGAGAAAGCCTGAC 60.800 60.000 32.06 0.00 43.56 3.51
1872 4125 0.244994 GAGCTCGAGAAAGCCTGACA 59.755 55.000 18.75 0.00 43.56 3.58
1873 4126 0.037790 AGCTCGAGAAAGCCTGACAC 60.038 55.000 18.75 0.00 43.56 3.67
1874 4127 0.319900 GCTCGAGAAAGCCTGACACA 60.320 55.000 18.75 0.00 36.22 3.72
1875 4128 1.707632 CTCGAGAAAGCCTGACACAG 58.292 55.000 6.58 0.00 0.00 3.66
1876 4129 0.319900 TCGAGAAAGCCTGACACAGC 60.320 55.000 0.00 0.00 0.00 4.40
1877 4130 1.294659 CGAGAAAGCCTGACACAGCC 61.295 60.000 0.00 0.00 0.00 4.85
1878 4131 0.957888 GAGAAAGCCTGACACAGCCC 60.958 60.000 0.00 0.00 0.00 5.19
1879 4132 2.281761 AAAGCCTGACACAGCCCG 60.282 61.111 0.00 0.00 0.00 6.13
1880 4133 3.850098 AAAGCCTGACACAGCCCGG 62.850 63.158 0.00 0.00 0.00 5.73
1952 4205 2.292292 TGCATTGATGATGAATGGCTCG 59.708 45.455 6.74 0.00 38.03 5.03
1958 4211 2.070262 TGATGAATGGCTCGCTATCG 57.930 50.000 0.00 0.00 0.00 2.92
1980 4233 3.004944 GTGATGACGTTAGGGAGGATCTC 59.995 52.174 0.00 0.00 33.92 2.75
1984 4237 0.962489 CGTTAGGGAGGATCTCGCAT 59.038 55.000 13.15 3.13 43.84 4.73
1987 4240 2.088104 TAGGGAGGATCTCGCATGTT 57.912 50.000 13.15 0.00 43.84 2.71
1988 4241 1.207791 AGGGAGGATCTCGCATGTTT 58.792 50.000 13.15 0.00 43.84 2.83
1993 4246 5.562454 GGAGGATCTCGCATGTTTGCAAC 62.562 52.174 0.00 0.00 41.87 4.17
2006 4344 5.723492 TGTTTGCAACGAGATATCTCATG 57.277 39.130 27.97 24.90 43.00 3.07
2014 4352 4.615949 ACGAGATATCTCATGACAAGCAC 58.384 43.478 27.97 2.13 43.00 4.40
2017 4355 2.671130 TATCTCATGACAAGCACGCA 57.329 45.000 0.00 0.00 0.00 5.24
2030 4368 1.300971 GCACGCACCTCACATCACAT 61.301 55.000 0.00 0.00 0.00 3.21
2037 4375 1.632409 ACCTCACATCACATCCTTGCT 59.368 47.619 0.00 0.00 0.00 3.91
2064 4402 0.034337 GCCTTCCACTTGTACGGTCA 59.966 55.000 0.00 0.00 0.00 4.02
2131 4471 7.308469 GCCAAGATGATTGTAATGAATCTCCTC 60.308 40.741 0.00 0.00 34.04 3.71
2155 4495 8.781067 TCGATTAATGAAATTTCCAATTAGCG 57.219 30.769 15.48 17.00 37.87 4.26
2175 4539 3.490933 GCGAAAAAGAAAAGGAAGCCACT 60.491 43.478 0.00 0.00 0.00 4.00
2191 4555 0.886490 CACTCCATATCCGGCAAGGC 60.886 60.000 0.00 0.00 40.77 4.35
2192 4556 1.302832 CTCCATATCCGGCAAGGCC 60.303 63.158 0.00 0.00 46.75 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.799755 CCCTACGCAACGCCAAGC 61.800 66.667 0.00 0.00 0.00 4.01
21 22 1.594293 CCACAATAGCGCCCCTACG 60.594 63.158 2.29 0.00 0.00 3.51
23 24 3.114825 GCCCACAATAGCGCCCCTA 62.115 63.158 2.29 0.00 0.00 3.53
24 25 4.506255 GCCCACAATAGCGCCCCT 62.506 66.667 2.29 0.00 0.00 4.79
25 26 2.411765 ATAGCCCACAATAGCGCCCC 62.412 60.000 2.29 0.00 0.00 5.80
31 32 3.560068 GTCGTCCAAATAGCCCACAATAG 59.440 47.826 0.00 0.00 0.00 1.73
33 34 2.365582 GTCGTCCAAATAGCCCACAAT 58.634 47.619 0.00 0.00 0.00 2.71
34 35 1.816074 GTCGTCCAAATAGCCCACAA 58.184 50.000 0.00 0.00 0.00 3.33
37 38 1.448893 GCGTCGTCCAAATAGCCCA 60.449 57.895 0.00 0.00 0.00 5.36
38 39 2.522638 CGCGTCGTCCAAATAGCCC 61.523 63.158 0.00 0.00 0.00 5.19
39 40 3.003478 CGCGTCGTCCAAATAGCC 58.997 61.111 0.00 0.00 0.00 3.93
42 43 1.923899 TATTGCGCGTCGTCCAAATA 58.076 45.000 8.43 0.00 0.00 1.40
43 44 1.080298 TTATTGCGCGTCGTCCAAAT 58.920 45.000 8.43 0.00 0.00 2.32
45 46 0.866427 TTTTATTGCGCGTCGTCCAA 59.134 45.000 8.43 2.82 0.00 3.53
46 47 1.080298 ATTTTATTGCGCGTCGTCCA 58.920 45.000 8.43 0.00 0.00 4.02
47 48 2.168201 AATTTTATTGCGCGTCGTCC 57.832 45.000 8.43 0.00 0.00 4.79
49 50 2.345041 TCGTAATTTTATTGCGCGTCGT 59.655 40.909 8.43 0.00 0.00 4.34
50 51 2.946357 TCGTAATTTTATTGCGCGTCG 58.054 42.857 8.43 0.00 0.00 5.12
52 53 4.899516 TCAATCGTAATTTTATTGCGCGT 58.100 34.783 8.43 0.00 31.98 6.01
53 54 5.194657 TCTCAATCGTAATTTTATTGCGCG 58.805 37.500 0.00 0.00 31.98 6.86
54 55 7.431215 TTTCTCAATCGTAATTTTATTGCGC 57.569 32.000 0.00 0.00 31.98 6.09
77 78 5.072040 CGCAGGGTGATTAGGAAATTTTT 57.928 39.130 0.00 0.00 0.00 1.94
78 79 4.718940 CGCAGGGTGATTAGGAAATTTT 57.281 40.909 0.00 0.00 0.00 1.82
79 80 4.631169 ATCCGCAGGGTGATTAGGAAATTT 60.631 41.667 0.00 0.00 44.06 1.82
80 81 3.117512 ATCCGCAGGGTGATTAGGAAATT 60.118 43.478 0.00 0.00 44.06 1.82
81 82 2.443255 ATCCGCAGGGTGATTAGGAAAT 59.557 45.455 0.00 0.00 44.06 2.17
82 83 1.843851 ATCCGCAGGGTGATTAGGAAA 59.156 47.619 0.00 0.00 44.06 3.13
83 84 1.507140 ATCCGCAGGGTGATTAGGAA 58.493 50.000 0.00 0.00 44.06 3.36
84 85 3.240670 ATCCGCAGGGTGATTAGGA 57.759 52.632 0.00 0.00 44.06 2.94
95 96 3.376234 ACATTTGAAGATCACATCCGCAG 59.624 43.478 0.00 0.00 0.00 5.18
96 97 3.346315 ACATTTGAAGATCACATCCGCA 58.654 40.909 0.00 0.00 0.00 5.69
98 99 4.201851 GGTGACATTTGAAGATCACATCCG 60.202 45.833 5.66 0.00 42.66 4.18
99 100 4.946157 AGGTGACATTTGAAGATCACATCC 59.054 41.667 5.66 0.00 42.66 3.51
100 101 6.506500 AAGGTGACATTTGAAGATCACATC 57.493 37.500 5.66 0.00 42.66 3.06
101 102 6.906157 AAAGGTGACATTTGAAGATCACAT 57.094 33.333 0.00 0.00 42.66 3.21
102 103 6.547141 AGAAAAGGTGACATTTGAAGATCACA 59.453 34.615 0.00 0.00 42.66 3.58
104 105 7.587037 AAGAAAAGGTGACATTTGAAGATCA 57.413 32.000 0.00 0.00 30.12 2.92
105 106 8.567948 TGTAAGAAAAGGTGACATTTGAAGATC 58.432 33.333 0.00 0.00 30.12 2.75
106 107 8.463930 TGTAAGAAAAGGTGACATTTGAAGAT 57.536 30.769 0.00 0.00 30.12 2.40
107 108 7.773224 TCTGTAAGAAAAGGTGACATTTGAAGA 59.227 33.333 0.00 0.00 42.31 2.87
108 109 7.930217 TCTGTAAGAAAAGGTGACATTTGAAG 58.070 34.615 0.00 0.00 42.31 3.02
109 110 7.873719 TCTGTAAGAAAAGGTGACATTTGAA 57.126 32.000 0.00 0.00 42.31 2.69
125 126 1.544691 GCGGAGTCCAAGTCTGTAAGA 59.455 52.381 10.49 0.00 43.69 2.10
127 128 1.272490 CAGCGGAGTCCAAGTCTGTAA 59.728 52.381 10.49 0.00 0.00 2.41
128 129 0.888619 CAGCGGAGTCCAAGTCTGTA 59.111 55.000 10.49 0.00 0.00 2.74
129 130 1.668294 CAGCGGAGTCCAAGTCTGT 59.332 57.895 10.49 0.00 0.00 3.41
131 132 2.286523 CCCAGCGGAGTCCAAGTCT 61.287 63.158 10.49 0.00 0.00 3.24
133 134 3.322466 CCCCAGCGGAGTCCAAGT 61.322 66.667 10.49 0.00 0.00 3.16
134 135 2.527951 CTTCCCCAGCGGAGTCCAAG 62.528 65.000 10.49 0.00 43.39 3.61
135 136 2.528127 TTCCCCAGCGGAGTCCAA 60.528 61.111 10.49 0.00 43.39 3.53
136 137 3.003173 CTTCCCCAGCGGAGTCCA 61.003 66.667 10.49 0.00 43.39 4.02
138 139 2.683933 TCCTTCCCCAGCGGAGTC 60.684 66.667 0.00 0.00 43.39 3.36
139 140 2.685380 CTCCTTCCCCAGCGGAGT 60.685 66.667 0.00 0.00 43.39 3.85
140 141 4.168291 GCTCCTTCCCCAGCGGAG 62.168 72.222 0.00 0.00 43.39 4.63
145 146 3.854669 ATCGCGCTCCTTCCCCAG 61.855 66.667 5.56 0.00 0.00 4.45
146 147 4.161295 CATCGCGCTCCTTCCCCA 62.161 66.667 5.56 0.00 0.00 4.96
166 167 2.894387 GGCCTCTGACATGCGCTC 60.894 66.667 9.73 0.00 0.00 5.03
167 168 3.040206 ATGGCCTCTGACATGCGCT 62.040 57.895 9.73 0.00 0.00 5.92
168 169 2.515523 ATGGCCTCTGACATGCGC 60.516 61.111 3.32 0.00 0.00 6.09
171 172 2.184830 CGCCATGGCCTCTGACATG 61.185 63.158 30.79 9.64 43.07 3.21
172 173 2.191375 CGCCATGGCCTCTGACAT 59.809 61.111 30.79 0.00 37.98 3.06
173 174 4.783621 GCGCCATGGCCTCTGACA 62.784 66.667 30.79 0.00 37.98 3.58
177 178 4.181010 ATTCGCGCCATGGCCTCT 62.181 61.111 30.79 8.57 37.98 3.69
180 181 3.474230 CTTGATTCGCGCCATGGCC 62.474 63.158 30.79 21.30 37.98 5.36
181 182 2.025156 CTTGATTCGCGCCATGGC 59.975 61.111 27.67 27.67 37.85 4.40
182 183 1.091771 AGTCTTGATTCGCGCCATGG 61.092 55.000 7.63 7.63 0.00 3.66
184 185 2.408050 GATAGTCTTGATTCGCGCCAT 58.592 47.619 0.00 0.00 0.00 4.40
185 186 1.538204 GGATAGTCTTGATTCGCGCCA 60.538 52.381 0.00 0.00 0.00 5.69
186 187 1.140816 GGATAGTCTTGATTCGCGCC 58.859 55.000 0.00 0.00 0.00 6.53
187 188 1.789464 CTGGATAGTCTTGATTCGCGC 59.211 52.381 0.00 0.00 0.00 6.86
190 191 4.655762 TCACCTGGATAGTCTTGATTCG 57.344 45.455 0.00 0.00 0.00 3.34
206 207 1.701847 AGTCTTGTCTTGCCATCACCT 59.298 47.619 0.00 0.00 0.00 4.00
207 208 2.079925 GAGTCTTGTCTTGCCATCACC 58.920 52.381 0.00 0.00 0.00 4.02
208 209 1.728971 CGAGTCTTGTCTTGCCATCAC 59.271 52.381 0.00 0.00 0.00 3.06
209 210 1.618343 TCGAGTCTTGTCTTGCCATCA 59.382 47.619 0.00 0.00 0.00 3.07
210 211 1.996191 GTCGAGTCTTGTCTTGCCATC 59.004 52.381 0.00 0.00 0.00 3.51
213 214 0.039437 TCGTCGAGTCTTGTCTTGCC 60.039 55.000 0.00 0.00 0.00 4.52
214 215 1.053811 GTCGTCGAGTCTTGTCTTGC 58.946 55.000 0.00 0.00 0.00 4.01
216 217 2.973419 GAGTCGTCGAGTCTTGTCTT 57.027 50.000 20.48 0.00 0.00 3.01
228 229 2.029728 CCAAAAGCATCATCGAGTCGTC 59.970 50.000 13.12 0.00 0.00 4.20
229 230 2.002586 CCAAAAGCATCATCGAGTCGT 58.997 47.619 13.12 0.00 0.00 4.34
231 232 2.476854 GCACCAAAAGCATCATCGAGTC 60.477 50.000 0.00 0.00 0.00 3.36
234 235 0.810648 GGCACCAAAAGCATCATCGA 59.189 50.000 0.00 0.00 0.00 3.59
235 236 0.813184 AGGCACCAAAAGCATCATCG 59.187 50.000 0.00 0.00 0.00 3.84
236 237 2.733227 CGAAGGCACCAAAAGCATCATC 60.733 50.000 0.00 0.00 0.00 2.92
237 238 1.203052 CGAAGGCACCAAAAGCATCAT 59.797 47.619 0.00 0.00 0.00 2.45
238 239 0.597568 CGAAGGCACCAAAAGCATCA 59.402 50.000 0.00 0.00 0.00 3.07
239 240 0.109132 CCGAAGGCACCAAAAGCATC 60.109 55.000 0.00 0.00 46.14 3.91
240 241 1.966762 CCGAAGGCACCAAAAGCAT 59.033 52.632 0.00 0.00 46.14 3.79
241 242 3.442441 CCGAAGGCACCAAAAGCA 58.558 55.556 0.00 0.00 46.14 3.91
253 254 4.935205 TCTAACATGAAACATCCACCGAAG 59.065 41.667 0.00 0.00 0.00 3.79
254 255 4.900684 TCTAACATGAAACATCCACCGAA 58.099 39.130 0.00 0.00 0.00 4.30
255 256 4.545208 TCTAACATGAAACATCCACCGA 57.455 40.909 0.00 0.00 0.00 4.69
256 257 5.466728 CCTATCTAACATGAAACATCCACCG 59.533 44.000 0.00 0.00 0.00 4.94
257 258 6.357367 ACCTATCTAACATGAAACATCCACC 58.643 40.000 0.00 0.00 0.00 4.61
259 260 7.437713 AGACCTATCTAACATGAAACATCCA 57.562 36.000 0.00 0.00 31.46 3.41
260 261 8.207545 AGAAGACCTATCTAACATGAAACATCC 58.792 37.037 0.00 0.00 33.57 3.51
261 262 9.039870 CAGAAGACCTATCTAACATGAAACATC 57.960 37.037 0.00 0.00 33.57 3.06
262 263 7.497249 GCAGAAGACCTATCTAACATGAAACAT 59.503 37.037 0.00 0.00 33.57 2.71
263 264 6.818644 GCAGAAGACCTATCTAACATGAAACA 59.181 38.462 0.00 0.00 33.57 2.83
264 265 6.019479 CGCAGAAGACCTATCTAACATGAAAC 60.019 42.308 0.00 0.00 33.57 2.78
266 267 5.127194 ACGCAGAAGACCTATCTAACATGAA 59.873 40.000 0.00 0.00 33.57 2.57
267 268 4.645136 ACGCAGAAGACCTATCTAACATGA 59.355 41.667 0.00 0.00 33.57 3.07
268 269 4.938080 ACGCAGAAGACCTATCTAACATG 58.062 43.478 0.00 0.00 33.57 3.21
269 270 5.352284 CAACGCAGAAGACCTATCTAACAT 58.648 41.667 0.00 0.00 33.57 2.71
270 271 4.381612 CCAACGCAGAAGACCTATCTAACA 60.382 45.833 0.00 0.00 33.57 2.41
271 272 4.113354 CCAACGCAGAAGACCTATCTAAC 58.887 47.826 0.00 0.00 33.57 2.34
276 277 2.766263 TCATCCAACGCAGAAGACCTAT 59.234 45.455 0.00 0.00 0.00 2.57
277 278 2.166459 CTCATCCAACGCAGAAGACCTA 59.834 50.000 0.00 0.00 0.00 3.08
278 279 0.976641 TCATCCAACGCAGAAGACCT 59.023 50.000 0.00 0.00 0.00 3.85
280 281 2.086054 ACTCATCCAACGCAGAAGAC 57.914 50.000 0.00 0.00 0.00 3.01
281 282 2.224281 ACAACTCATCCAACGCAGAAGA 60.224 45.455 0.00 0.00 0.00 2.87
282 283 2.146342 ACAACTCATCCAACGCAGAAG 58.854 47.619 0.00 0.00 0.00 2.85
283 284 2.254546 ACAACTCATCCAACGCAGAA 57.745 45.000 0.00 0.00 0.00 3.02
285 286 2.352651 CCATACAACTCATCCAACGCAG 59.647 50.000 0.00 0.00 0.00 5.18
286 287 2.290008 ACCATACAACTCATCCAACGCA 60.290 45.455 0.00 0.00 0.00 5.24
288 289 3.334691 ACACCATACAACTCATCCAACG 58.665 45.455 0.00 0.00 0.00 4.10
290 291 6.480763 ACATTACACCATACAACTCATCCAA 58.519 36.000 0.00 0.00 0.00 3.53
291 292 6.061022 ACATTACACCATACAACTCATCCA 57.939 37.500 0.00 0.00 0.00 3.41
292 293 6.677920 GCAACATTACACCATACAACTCATCC 60.678 42.308 0.00 0.00 0.00 3.51
293 294 6.258160 GCAACATTACACCATACAACTCATC 58.742 40.000 0.00 0.00 0.00 2.92
295 296 4.457603 GGCAACATTACACCATACAACTCA 59.542 41.667 0.00 0.00 0.00 3.41
297 298 4.662278 AGGCAACATTACACCATACAACT 58.338 39.130 0.00 0.00 41.41 3.16
298 299 5.385509 AAGGCAACATTACACCATACAAC 57.614 39.130 0.00 0.00 41.41 3.32
299 300 4.155099 CGAAGGCAACATTACACCATACAA 59.845 41.667 0.00 0.00 41.41 2.41
300 301 3.687212 CGAAGGCAACATTACACCATACA 59.313 43.478 0.00 0.00 41.41 2.29
301 302 3.486875 GCGAAGGCAACATTACACCATAC 60.487 47.826 0.00 0.00 39.62 2.39
302 303 2.680841 GCGAAGGCAACATTACACCATA 59.319 45.455 0.00 0.00 39.62 2.74
303 304 1.472480 GCGAAGGCAACATTACACCAT 59.528 47.619 0.00 0.00 39.62 3.55
304 305 0.878416 GCGAAGGCAACATTACACCA 59.122 50.000 0.00 0.00 39.62 4.17
305 306 0.179200 CGCGAAGGCAACATTACACC 60.179 55.000 0.00 0.00 39.92 4.16
306 307 0.515564 ACGCGAAGGCAACATTACAC 59.484 50.000 15.93 0.00 39.92 2.90
307 308 0.515127 CACGCGAAGGCAACATTACA 59.485 50.000 15.93 0.00 39.92 2.41
308 309 0.179200 CCACGCGAAGGCAACATTAC 60.179 55.000 15.93 0.00 39.92 1.89
311 312 1.599518 TTCCACGCGAAGGCAACAT 60.600 52.632 15.93 0.00 39.92 2.71
312 313 2.203084 TTCCACGCGAAGGCAACA 60.203 55.556 15.93 0.00 39.92 3.33
314 315 2.951475 AAGGTTCCACGCGAAGGCAA 62.951 55.000 15.93 7.98 39.92 4.52
316 317 2.258726 AAAGGTTCCACGCGAAGGC 61.259 57.895 15.93 2.16 0.00 4.35
317 318 1.164041 ACAAAGGTTCCACGCGAAGG 61.164 55.000 15.93 15.14 0.00 3.46
318 319 0.041312 CACAAAGGTTCCACGCGAAG 60.041 55.000 15.93 4.40 0.00 3.79
319 320 2.018544 CACAAAGGTTCCACGCGAA 58.981 52.632 15.93 0.00 0.00 4.70
323 324 0.738389 AACAGCACAAAGGTTCCACG 59.262 50.000 0.00 0.00 0.00 4.94
326 327 3.119137 ACAGAAAACAGCACAAAGGTTCC 60.119 43.478 0.00 0.00 0.00 3.62
327 328 4.105486 GACAGAAAACAGCACAAAGGTTC 58.895 43.478 0.00 0.00 0.00 3.62
329 330 2.097466 CGACAGAAAACAGCACAAAGGT 59.903 45.455 0.00 0.00 0.00 3.50
331 332 3.354397 GACGACAGAAAACAGCACAAAG 58.646 45.455 0.00 0.00 0.00 2.77
332 333 2.096819 GGACGACAGAAAACAGCACAAA 59.903 45.455 0.00 0.00 0.00 2.83
333 334 1.668751 GGACGACAGAAAACAGCACAA 59.331 47.619 0.00 0.00 0.00 3.33
335 336 1.527311 GAGGACGACAGAAAACAGCAC 59.473 52.381 0.00 0.00 0.00 4.40
338 339 2.802816 CCAAGAGGACGACAGAAAACAG 59.197 50.000 0.00 0.00 36.89 3.16
340 341 3.107642 TCCAAGAGGACGACAGAAAAC 57.892 47.619 0.00 0.00 39.61 2.43
353 354 2.938956 AACCAGGTTCAGTCCAAGAG 57.061 50.000 0.00 0.00 0.00 2.85
355 356 2.880890 CAGAAACCAGGTTCAGTCCAAG 59.119 50.000 4.93 0.00 0.00 3.61
356 357 2.930950 CAGAAACCAGGTTCAGTCCAA 58.069 47.619 4.93 0.00 0.00 3.53
357 358 1.476833 GCAGAAACCAGGTTCAGTCCA 60.477 52.381 4.93 0.00 0.00 4.02
358 359 1.202818 AGCAGAAACCAGGTTCAGTCC 60.203 52.381 4.93 0.00 0.00 3.85
359 360 2.262423 AGCAGAAACCAGGTTCAGTC 57.738 50.000 4.93 0.00 0.00 3.51
360 361 2.736670 AAGCAGAAACCAGGTTCAGT 57.263 45.000 4.93 0.00 0.00 3.41
363 364 3.243535 CCAGAAAAGCAGAAACCAGGTTC 60.244 47.826 4.93 0.00 0.00 3.62
364 365 2.695147 CCAGAAAAGCAGAAACCAGGTT 59.305 45.455 0.00 0.00 0.00 3.50
365 366 2.310538 CCAGAAAAGCAGAAACCAGGT 58.689 47.619 0.00 0.00 0.00 4.00
366 367 1.615392 CCCAGAAAAGCAGAAACCAGG 59.385 52.381 0.00 0.00 0.00 4.45
367 368 2.310538 ACCCAGAAAAGCAGAAACCAG 58.689 47.619 0.00 0.00 0.00 4.00
368 369 2.430332 CAACCCAGAAAAGCAGAAACCA 59.570 45.455 0.00 0.00 0.00 3.67
369 370 2.430694 ACAACCCAGAAAAGCAGAAACC 59.569 45.455 0.00 0.00 0.00 3.27
371 372 4.953579 AGTTACAACCCAGAAAAGCAGAAA 59.046 37.500 0.00 0.00 0.00 2.52
372 373 4.532834 AGTTACAACCCAGAAAAGCAGAA 58.467 39.130 0.00 0.00 0.00 3.02
373 374 4.164843 AGTTACAACCCAGAAAAGCAGA 57.835 40.909 0.00 0.00 0.00 4.26
374 375 4.610945 CAAGTTACAACCCAGAAAAGCAG 58.389 43.478 0.00 0.00 0.00 4.24
377 378 4.338118 TCAGCAAGTTACAACCCAGAAAAG 59.662 41.667 0.00 0.00 0.00 2.27
378 379 4.274147 TCAGCAAGTTACAACCCAGAAAA 58.726 39.130 0.00 0.00 0.00 2.29
382 383 3.214328 AGTTCAGCAAGTTACAACCCAG 58.786 45.455 0.00 0.00 0.00 4.45
383 384 3.290948 AGTTCAGCAAGTTACAACCCA 57.709 42.857 0.00 0.00 0.00 4.51
384 385 4.213482 CACTAGTTCAGCAAGTTACAACCC 59.787 45.833 0.00 0.00 0.00 4.11
389 390 3.433615 CAGGCACTAGTTCAGCAAGTTAC 59.566 47.826 6.08 0.00 36.02 2.50
391 392 2.104792 TCAGGCACTAGTTCAGCAAGTT 59.895 45.455 6.08 0.00 36.02 2.66
392 393 1.694150 TCAGGCACTAGTTCAGCAAGT 59.306 47.619 6.08 0.00 36.02 3.16
393 394 2.344950 CTCAGGCACTAGTTCAGCAAG 58.655 52.381 6.08 0.00 36.02 4.01
395 396 0.610174 CCTCAGGCACTAGTTCAGCA 59.390 55.000 6.08 0.00 36.02 4.41
396 397 0.107945 CCCTCAGGCACTAGTTCAGC 60.108 60.000 0.00 0.00 36.02 4.26
416 417 5.394322 CGCGTCCGGCTTTAAATTAATAAAG 59.606 40.000 0.00 6.41 42.93 1.85
417 418 5.163774 ACGCGTCCGGCTTTAAATTAATAAA 60.164 36.000 5.58 0.00 40.44 1.40
419 420 3.870419 ACGCGTCCGGCTTTAAATTAATA 59.130 39.130 5.58 0.00 40.44 0.98
421 422 2.075338 ACGCGTCCGGCTTTAAATTAA 58.925 42.857 5.58 0.00 40.44 1.40
422 423 1.660104 GACGCGTCCGGCTTTAAATTA 59.340 47.619 28.61 0.00 40.09 1.40
424 425 2.084013 GACGCGTCCGGCTTTAAAT 58.916 52.632 28.61 0.00 40.09 1.40
425 426 3.553039 GACGCGTCCGGCTTTAAA 58.447 55.556 28.61 0.00 40.09 1.52
440 441 3.865224 TTTGGAACGAAAACGCTAGAC 57.135 42.857 0.00 0.00 0.00 2.59
444 445 5.788055 AAAAATTTTGGAACGAAAACGCT 57.212 30.435 3.73 0.00 0.00 5.07
464 465 0.832135 TACCATTGGCGGGGCAAAAA 60.832 50.000 11.80 0.00 0.00 1.94
466 467 1.979693 GTACCATTGGCGGGGCAAA 60.980 57.895 11.80 0.00 0.00 3.68
467 468 2.361865 GTACCATTGGCGGGGCAA 60.362 61.111 10.19 10.19 0.00 4.52
470 471 1.314730 GTATTGTACCATTGGCGGGG 58.685 55.000 1.54 0.00 0.00 5.73
572 574 1.967319 TGAAGCGATCAATTAGGCCC 58.033 50.000 0.00 0.00 34.30 5.80
586 588 2.483877 TGTTCAACATCGACCATGAAGC 59.516 45.455 8.38 5.66 36.21 3.86
629 636 3.470888 CGGCCCGGTCCATCTCTT 61.471 66.667 0.76 0.00 0.00 2.85
630 637 4.458829 TCGGCCCGGTCCATCTCT 62.459 66.667 1.90 0.00 0.00 3.10
631 638 3.917760 CTCGGCCCGGTCCATCTC 61.918 72.222 1.90 0.00 0.00 2.75
632 639 3.976490 TTCTCGGCCCGGTCCATCT 62.976 63.158 1.90 0.00 0.00 2.90
633 640 3.467226 TTCTCGGCCCGGTCCATC 61.467 66.667 1.90 0.00 0.00 3.51
645 652 2.860628 GCATGCTACGCGGTTCTCG 61.861 63.158 12.47 0.00 42.76 4.04
687 694 1.863155 ATTTCCACTGGTCCGCCCAT 61.863 55.000 0.00 0.00 44.15 4.00
691 698 0.804989 CTTGATTTCCACTGGTCCGC 59.195 55.000 0.00 0.00 0.00 5.54
692 699 0.804989 GCTTGATTTCCACTGGTCCG 59.195 55.000 0.00 0.00 0.00 4.79
774 789 6.348458 CGCATATGGTTGAAAGAGAAAAGTCA 60.348 38.462 4.56 0.00 0.00 3.41
1018 3238 2.046023 CATCAGCAGGACGGCCAA 60.046 61.111 11.69 0.00 36.29 4.52
1227 3466 1.032657 TGACTAGTCGAGCTCTGCCC 61.033 60.000 17.85 0.00 0.00 5.36
1279 3518 6.093082 TCAATGAACACGAACTCTATCTACGA 59.907 38.462 0.00 0.00 0.00 3.43
1344 3584 4.861102 ACTCCAGAGCTCCAAAATTTTG 57.139 40.909 21.65 21.65 37.90 2.44
1358 3598 5.367945 AACTAAACCTGAACAACTCCAGA 57.632 39.130 0.00 0.00 32.37 3.86
1395 3637 6.000219 ACTGCTTTATTGCATATCCCTGTAG 59.000 40.000 0.00 0.00 42.48 2.74
1396 3638 5.940617 ACTGCTTTATTGCATATCCCTGTA 58.059 37.500 0.00 0.00 42.48 2.74
1397 3639 4.796606 ACTGCTTTATTGCATATCCCTGT 58.203 39.130 0.00 0.00 42.48 4.00
1398 3640 5.068636 AGACTGCTTTATTGCATATCCCTG 58.931 41.667 0.00 0.00 42.48 4.45
1399 3641 5.316158 AGACTGCTTTATTGCATATCCCT 57.684 39.130 0.00 0.00 42.48 4.20
1401 3643 7.359598 CGTCTAAGACTGCTTTATTGCATATCC 60.360 40.741 0.00 0.00 42.48 2.59
1406 3648 4.566004 ACGTCTAAGACTGCTTTATTGCA 58.434 39.130 0.00 0.00 41.05 4.08
1407 3649 5.232414 CCTACGTCTAAGACTGCTTTATTGC 59.768 44.000 0.00 0.00 35.56 3.56
1408 3650 6.331061 ACCTACGTCTAAGACTGCTTTATTG 58.669 40.000 0.00 0.00 35.56 1.90
1409 3651 6.405619 GGACCTACGTCTAAGACTGCTTTATT 60.406 42.308 0.00 0.00 39.15 1.40
1422 3664 1.280710 TGGTTACGGGACCTACGTCTA 59.719 52.381 10.31 0.00 44.37 2.59
1453 3695 9.436957 ACGAATAGAATGTGTCAAAATCTTACT 57.563 29.630 0.00 0.00 0.00 2.24
1460 3702 7.169476 TGTCGTAACGAATAGAATGTGTCAAAA 59.831 33.333 0.00 0.00 37.72 2.44
1472 3714 4.469552 TCACACTGTGTCGTAACGAATAG 58.530 43.478 11.12 0.00 37.72 1.73
1508 3754 8.791675 TCAGACAATTTATCAATAGCAAACACA 58.208 29.630 0.00 0.00 0.00 3.72
1555 3801 3.838903 GTCCCTTCTTCTCTCCCAAAGTA 59.161 47.826 0.00 0.00 0.00 2.24
1630 3883 4.561254 AGCTTTATTCTCTAGGGGGAGA 57.439 45.455 0.00 0.00 40.16 3.71
1631 3884 4.775253 CCTAGCTTTATTCTCTAGGGGGAG 59.225 50.000 0.00 0.00 43.49 4.30
1671 3924 3.005554 CCACAAAGGCTACAGATGTCAG 58.994 50.000 0.00 0.00 0.00 3.51
1675 3928 2.086869 CCACCACAAAGGCTACAGATG 58.913 52.381 0.00 0.00 43.14 2.90
1684 3937 1.228124 TCGCCTTCCACCACAAAGG 60.228 57.895 0.00 0.00 44.10 3.11
1704 3957 7.396419 GCATCTACAAAATGCATGAAAATGTC 58.604 34.615 0.00 0.00 46.93 3.06
1744 3997 0.912006 TGCCCAGGTATAGCCACACA 60.912 55.000 0.00 0.00 40.61 3.72
1752 4005 2.747177 CCCGAGATATGCCCAGGTATA 58.253 52.381 0.00 0.00 0.00 1.47
1753 4006 1.573108 CCCGAGATATGCCCAGGTAT 58.427 55.000 0.00 0.00 0.00 2.73
1754 4007 1.192146 GCCCGAGATATGCCCAGGTA 61.192 60.000 0.00 0.00 0.00 3.08
1755 4008 2.520536 GCCCGAGATATGCCCAGGT 61.521 63.158 0.00 0.00 0.00 4.00
1756 4009 2.348998 GCCCGAGATATGCCCAGG 59.651 66.667 0.00 0.00 0.00 4.45
1757 4010 2.348998 GGCCCGAGATATGCCCAG 59.651 66.667 0.00 0.00 39.30 4.45
1758 4011 3.625897 CGGCCCGAGATATGCCCA 61.626 66.667 0.00 0.00 42.29 5.36
1759 4012 3.178540 AACGGCCCGAGATATGCCC 62.179 63.158 11.71 0.00 42.29 5.36
1762 4015 4.675404 GGAACGGCCCGAGATATG 57.325 61.111 11.71 0.00 0.00 1.78
1787 4040 4.475051 AGGTTTTTAGCAACGGGTTTTT 57.525 36.364 0.00 0.00 0.00 1.94
1790 4043 3.151554 CCTAGGTTTTTAGCAACGGGTT 58.848 45.455 0.00 0.00 0.00 4.11
1792 4045 1.471287 GCCTAGGTTTTTAGCAACGGG 59.529 52.381 11.31 0.00 0.00 5.28
1794 4047 1.471287 GGGCCTAGGTTTTTAGCAACG 59.529 52.381 11.31 0.00 0.00 4.10
1795 4048 1.471287 CGGGCCTAGGTTTTTAGCAAC 59.529 52.381 11.31 0.00 0.00 4.17
1796 4049 1.351683 TCGGGCCTAGGTTTTTAGCAA 59.648 47.619 11.31 0.00 0.00 3.91
1797 4050 0.985760 TCGGGCCTAGGTTTTTAGCA 59.014 50.000 11.31 0.00 0.00 3.49
1798 4051 1.664873 CTCGGGCCTAGGTTTTTAGC 58.335 55.000 11.31 0.00 0.00 3.09
1799 4052 1.664873 GCTCGGGCCTAGGTTTTTAG 58.335 55.000 11.31 3.48 0.00 1.85
1800 4053 3.867549 GCTCGGGCCTAGGTTTTTA 57.132 52.632 11.31 0.00 0.00 1.52
1828 4081 1.337823 CCGATTTAGTAGGCCCGATGG 60.338 57.143 0.00 0.00 0.00 3.51
1829 4082 1.337823 CCCGATTTAGTAGGCCCGATG 60.338 57.143 0.00 0.00 0.00 3.84
1830 4083 0.974383 CCCGATTTAGTAGGCCCGAT 59.026 55.000 0.00 0.00 0.00 4.18
1831 4084 1.751349 GCCCGATTTAGTAGGCCCGA 61.751 60.000 0.00 0.00 39.60 5.14
1832 4085 1.301479 GCCCGATTTAGTAGGCCCG 60.301 63.158 0.00 0.00 39.60 6.13
1833 4086 4.794199 GCCCGATTTAGTAGGCCC 57.206 61.111 0.00 0.00 39.60 5.80
1835 4088 1.301479 CGGGCCCGATTTAGTAGGC 60.301 63.158 41.82 0.00 44.99 3.93
1836 4089 2.433217 TCGGGCCCGATTTAGTAGG 58.567 57.895 42.66 11.59 44.01 3.18
1847 4100 3.724914 CTTTCTCGAGCTCGGGCCC 62.725 68.421 33.98 13.57 40.23 5.80
1848 4101 2.202810 CTTTCTCGAGCTCGGGCC 60.203 66.667 33.98 0.00 40.23 5.80
1849 4102 2.888051 GCTTTCTCGAGCTCGGGC 60.888 66.667 33.98 24.09 40.23 6.13
1850 4103 2.202810 GGCTTTCTCGAGCTCGGG 60.203 66.667 33.98 32.22 42.32 5.14
1851 4104 1.518133 CAGGCTTTCTCGAGCTCGG 60.518 63.158 33.98 24.14 42.32 4.63
1852 4105 0.800300 GTCAGGCTTTCTCGAGCTCG 60.800 60.000 30.03 30.03 42.32 5.03
1853 4106 0.244994 TGTCAGGCTTTCTCGAGCTC 59.755 55.000 7.81 2.73 42.32 4.09
1854 4107 0.037790 GTGTCAGGCTTTCTCGAGCT 60.038 55.000 7.81 0.00 42.32 4.09
1855 4108 0.319900 TGTGTCAGGCTTTCTCGAGC 60.320 55.000 7.81 0.00 41.96 5.03
1856 4109 1.707632 CTGTGTCAGGCTTTCTCGAG 58.292 55.000 5.93 5.93 0.00 4.04
1857 4110 0.319900 GCTGTGTCAGGCTTTCTCGA 60.320 55.000 0.00 0.00 31.21 4.04
1858 4111 2.157421 GCTGTGTCAGGCTTTCTCG 58.843 57.895 0.00 0.00 31.21 4.04
1886 4139 2.831742 TAGTCGTAGCTGGGCCGG 60.832 66.667 8.39 8.39 0.00 6.13
1887 4140 1.381928 TTCTAGTCGTAGCTGGGCCG 61.382 60.000 0.00 0.00 0.00 6.13
1888 4141 1.041437 ATTCTAGTCGTAGCTGGGCC 58.959 55.000 0.00 0.00 0.00 5.80
1889 4142 1.681793 TCATTCTAGTCGTAGCTGGGC 59.318 52.381 0.00 0.00 0.00 5.36
1890 4143 4.592485 AATCATTCTAGTCGTAGCTGGG 57.408 45.455 0.00 0.00 0.00 4.45
1891 4144 5.689514 CAGAAATCATTCTAGTCGTAGCTGG 59.310 44.000 0.00 0.00 44.11 4.85
1892 4145 5.174761 GCAGAAATCATTCTAGTCGTAGCTG 59.825 44.000 0.00 0.00 44.11 4.24
1893 4146 5.163509 TGCAGAAATCATTCTAGTCGTAGCT 60.164 40.000 0.00 0.00 44.11 3.32
1894 4147 5.043903 TGCAGAAATCATTCTAGTCGTAGC 58.956 41.667 0.00 0.00 44.11 3.58
1895 4148 5.460419 GGTGCAGAAATCATTCTAGTCGTAG 59.540 44.000 0.00 0.00 44.11 3.51
1896 4149 5.127194 AGGTGCAGAAATCATTCTAGTCGTA 59.873 40.000 0.00 0.00 44.11 3.43
1897 4150 4.081420 AGGTGCAGAAATCATTCTAGTCGT 60.081 41.667 0.00 0.00 44.11 4.34
1898 4151 4.437239 AGGTGCAGAAATCATTCTAGTCG 58.563 43.478 0.00 0.00 44.11 4.18
1958 4211 2.959707 AGATCCTCCCTAACGTCATCAC 59.040 50.000 0.00 0.00 0.00 3.06
1987 4240 5.009854 TGTCATGAGATATCTCGTTGCAA 57.990 39.130 22.40 12.79 45.72 4.08
1988 4241 4.654091 TGTCATGAGATATCTCGTTGCA 57.346 40.909 22.40 19.64 45.72 4.08
1993 4246 3.667726 CGTGCTTGTCATGAGATATCTCG 59.332 47.826 24.27 13.35 45.72 4.04
2006 4344 1.230635 ATGTGAGGTGCGTGCTTGTC 61.231 55.000 0.00 0.00 0.00 3.18
2014 4352 0.107993 AGGATGTGATGTGAGGTGCG 60.108 55.000 0.00 0.00 0.00 5.34
2017 4355 1.632409 AGCAAGGATGTGATGTGAGGT 59.368 47.619 0.00 0.00 0.00 3.85
2077 4417 2.009042 GCCAATCTCGTCTGGTCCAAG 61.009 57.143 0.00 0.00 34.97 3.61
2131 4471 8.781067 TCGCTAATTGGAAATTTCATTAATCG 57.219 30.769 19.49 17.47 0.00 3.34
2155 4495 4.099419 TGGAGTGGCTTCCTTTTCTTTTTC 59.901 41.667 9.47 0.00 38.12 2.29
2166 4506 0.035458 CCGGATATGGAGTGGCTTCC 59.965 60.000 0.00 2.19 37.77 3.46
2175 4539 2.836154 GGCCTTGCCGGATATGGA 59.164 61.111 5.05 0.00 39.62 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.