Multiple sequence alignment - TraesCS4D01G277800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G277800 chr4D 100.000 2228 0 0 1 2228 449860929 449858702 0.000000e+00 4115.0
1 TraesCS4D01G277800 chr4D 79.320 735 78 41 688 1387 449876377 449875682 4.360000e-122 448.0
2 TraesCS4D01G277800 chr4D 83.333 348 43 7 945 1288 449739453 449739117 7.730000e-80 307.0
3 TraesCS4D01G277800 chr4B 91.567 1589 88 22 1 1560 562426390 562424819 0.000000e+00 2150.0
4 TraesCS4D01G277800 chr4B 90.694 591 48 6 1642 2228 562424715 562424128 0.000000e+00 780.0
5 TraesCS4D01G277800 chr4B 78.668 736 86 40 683 1363 562436670 562435951 7.350000e-115 424.0
6 TraesCS4D01G277800 chr4A 87.610 1251 62 29 109 1319 17027650 17028847 0.000000e+00 1365.0
7 TraesCS4D01G277800 chr4A 78.658 745 81 44 683 1387 17023955 17024661 7.350000e-115 424.0
8 TraesCS4D01G277800 chr4A 80.336 595 58 33 683 1265 17018018 17018565 1.600000e-106 396.0
9 TraesCS4D01G277800 chr4A 80.000 505 67 23 795 1285 17256409 17256893 2.120000e-90 342.0
10 TraesCS4D01G277800 chr4A 89.734 263 23 4 1968 2228 17029223 17029483 1.280000e-87 333.0
11 TraesCS4D01G277800 chr4A 82.709 347 46 7 947 1288 17032577 17032914 1.670000e-76 296.0
12 TraesCS4D01G277800 chr4A 91.509 106 7 2 1 105 17027501 17027605 6.410000e-31 145.0
13 TraesCS4D01G277800 chr1D 78.286 175 27 8 275 449 244361397 244361560 3.910000e-18 102.0
14 TraesCS4D01G277800 chr7B 80.952 126 19 2 247 368 696953602 696953726 6.550000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G277800 chr4D 449858702 449860929 2227 True 4115.0 4115 100.0000 1 2228 1 chr4D.!!$R2 2227
1 TraesCS4D01G277800 chr4D 449875682 449876377 695 True 448.0 448 79.3200 688 1387 1 chr4D.!!$R3 699
2 TraesCS4D01G277800 chr4B 562424128 562426390 2262 True 1465.0 2150 91.1305 1 2228 2 chr4B.!!$R2 2227
3 TraesCS4D01G277800 chr4B 562435951 562436670 719 True 424.0 424 78.6680 683 1363 1 chr4B.!!$R1 680
4 TraesCS4D01G277800 chr4A 17023955 17032914 8959 False 512.6 1365 86.0440 1 2228 5 chr4A.!!$F3 2227
5 TraesCS4D01G277800 chr4A 17018018 17018565 547 False 396.0 396 80.3360 683 1265 1 chr4A.!!$F1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 281 0.032615 CTAGTCCAGCCCTCTCCAGT 60.033 60.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1275 5624 0.042708 CGAACTCTATGTGCGCATGC 60.043 55.0 22.84 7.91 41.25 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 0.041982 GGCCAAAATAAGGGTGGGGA 59.958 55.000 0.00 0.00 32.71 4.81
50 51 0.929230 AATAAGGGTGGGGAAGGGGG 60.929 60.000 0.00 0.00 0.00 5.40
75 87 6.758416 GCAAACTGGAATTTCACTCTTTTTCT 59.242 34.615 0.00 0.00 0.00 2.52
81 93 9.538508 CTGGAATTTCACTCTTTTTCTGAAAAT 57.461 29.630 15.63 0.00 37.43 1.82
94 106 9.414295 CTTTTTCTGAAAATTGATCATACTGCA 57.586 29.630 15.63 0.00 34.45 4.41
101 113 9.752961 TGAAAATTGATCATACTGCAATATTGG 57.247 29.630 17.02 4.03 32.39 3.16
102 114 9.970395 GAAAATTGATCATACTGCAATATTGGA 57.030 29.630 17.02 13.34 32.39 3.53
141 153 6.036626 CGCATGTGATTGGTAATGTACACTTA 59.963 38.462 0.00 0.00 0.00 2.24
142 154 7.254761 CGCATGTGATTGGTAATGTACACTTAT 60.255 37.037 0.00 0.00 0.00 1.73
191 203 7.549615 AGACTGTGGTTTTTGTTAAGTAGTC 57.450 36.000 0.00 0.00 0.00 2.59
197 209 5.652891 TGGTTTTTGTTAAGTAGTCTTGCCA 59.347 36.000 0.00 0.00 35.36 4.92
266 279 1.311403 CCTAGTCCAGCCCTCTCCA 59.689 63.158 0.00 0.00 0.00 3.86
267 280 0.758685 CCTAGTCCAGCCCTCTCCAG 60.759 65.000 0.00 0.00 0.00 3.86
268 281 0.032615 CTAGTCCAGCCCTCTCCAGT 60.033 60.000 0.00 0.00 0.00 4.00
269 282 0.413832 TAGTCCAGCCCTCTCCAGTT 59.586 55.000 0.00 0.00 0.00 3.16
397 410 3.963428 ACGAATAAGGAGCAGTTCACT 57.037 42.857 0.00 0.00 0.00 3.41
399 412 4.745649 ACGAATAAGGAGCAGTTCACTAC 58.254 43.478 0.00 0.00 0.00 2.73
412 425 6.890814 AGCAGTTCACTACCTACTACTATGTT 59.109 38.462 0.00 0.00 0.00 2.71
437 450 3.218453 TGACCCAACAAATCGTCAACAT 58.782 40.909 0.00 0.00 32.51 2.71
454 467 1.425066 ACATGCTCCCCAAGAGAACAA 59.575 47.619 0.00 0.00 46.50 2.83
520 533 4.460382 AGTGAATTAGCAGAACCAATGGTG 59.540 41.667 5.34 0.00 35.34 4.17
537 550 3.944422 GGTGCAATACCGTACAAGATG 57.056 47.619 0.00 0.00 40.26 2.90
568 581 2.571757 CTGCTCGTCCGTGGCTTA 59.428 61.111 8.26 0.00 0.00 3.09
793 825 1.772453 ACTTTTCTCCTTCAACCCCGA 59.228 47.619 0.00 0.00 0.00 5.14
830 862 4.086706 CTATAAAAGGAACCCGCCATCT 57.913 45.455 0.00 0.00 0.00 2.90
885 944 4.166531 TCATTTCATCCATCACTCCATCCA 59.833 41.667 0.00 0.00 0.00 3.41
898 967 3.698040 ACTCCATCCAACGTACGTAGATT 59.302 43.478 23.12 9.05 0.00 2.40
905 974 0.101219 ACGTACGTAGATTTCGGCCC 59.899 55.000 21.41 0.00 0.00 5.80
916 985 1.161563 TTTCGGCCCGTCTGAAACAC 61.162 55.000 1.63 0.00 43.23 3.32
969 1051 4.022155 ACTCCGAGACTCAGAAGTTAAACC 60.022 45.833 1.33 0.00 35.28 3.27
1056 1138 0.034896 AATTCTGCGACGTGGTCCTT 59.965 50.000 0.00 0.00 0.00 3.36
1266 5615 5.292101 GCAGAGCACGATTAGTCAATTAGTT 59.708 40.000 0.00 0.00 0.00 2.24
1275 5624 5.469373 TTAGTCAATTAGTTCATGCTGCG 57.531 39.130 0.00 0.00 0.00 5.18
1308 5687 4.910746 AGAGTTCGTGTTCATTGATTCG 57.089 40.909 0.00 0.00 0.00 3.34
1320 5699 9.107367 GTGTTCATTGATTCGTTCTTTCTTTAG 57.893 33.333 0.00 0.00 0.00 1.85
1362 5743 0.776810 TGAACAAATGGAGCCCTGGA 59.223 50.000 0.00 0.00 0.00 3.86
1421 5818 7.059788 TGCATTAATAGGTCATGTAACCATGT 58.940 34.615 6.37 0.00 46.99 3.21
1542 6023 9.802039 TGATTATAGGTTTCAACTGTTTTACCT 57.198 29.630 17.15 17.15 39.25 3.08
1588 6069 4.483476 AAATACGAGTGAGCACAAAACC 57.517 40.909 3.19 0.00 0.00 3.27
1591 6072 1.282875 GAGTGAGCACAAAACCGGC 59.717 57.895 0.00 0.00 0.00 6.13
1592 6073 1.152963 AGTGAGCACAAAACCGGCT 60.153 52.632 0.00 0.00 41.35 5.52
1593 6074 0.107831 AGTGAGCACAAAACCGGCTA 59.892 50.000 0.00 0.00 38.15 3.93
1594 6075 0.948678 GTGAGCACAAAACCGGCTAA 59.051 50.000 0.00 0.00 38.15 3.09
1605 6086 2.579410 ACCGGCTAATTTTCACCACT 57.421 45.000 0.00 0.00 0.00 4.00
1620 6101 3.007831 TCACCACTGTTGACTGATATGCA 59.992 43.478 0.00 0.00 0.00 3.96
1636 6117 7.889589 TGATATGCAGGATGAAGTTTATACG 57.110 36.000 0.00 0.00 39.69 3.06
1646 6184 8.921205 AGGATGAAGTTTATACGGTACTACAAT 58.079 33.333 0.00 0.00 0.00 2.71
1700 6238 6.429692 TCATGGATGAACAAAATGACGTAAGT 59.570 34.615 0.00 0.00 44.54 2.24
1726 6264 6.127591 TGTGAGCTCTCCTAACTCATAGAAAC 60.128 42.308 16.19 0.00 42.08 2.78
1734 6272 5.475909 TCCTAACTCATAGAAACGTCACTGT 59.524 40.000 0.00 0.00 33.04 3.55
1746 6284 2.288273 ACGTCACTGTAGGTCAGAAAGC 60.288 50.000 1.79 0.00 46.27 3.51
1760 6298 7.620880 AGGTCAGAAAGCATACATACACTTTA 58.379 34.615 0.00 0.00 32.70 1.85
1761 6299 8.267894 AGGTCAGAAAGCATACATACACTTTAT 58.732 33.333 0.00 0.00 32.70 1.40
1792 6331 3.006112 TCAAAAGGCCGGTTGCATATA 57.994 42.857 14.67 0.00 43.89 0.86
1793 6332 3.561143 TCAAAAGGCCGGTTGCATATAT 58.439 40.909 14.67 0.00 43.89 0.86
1805 6344 7.485913 GCCGGTTGCATATATGAATTATTGAAG 59.514 37.037 17.10 0.00 40.77 3.02
1841 6380 7.205515 ACAACTCAGATGATCCTAGGAAAAT 57.794 36.000 17.30 12.38 0.00 1.82
1850 6389 5.428253 TGATCCTAGGAAAATCTTGAACGG 58.572 41.667 17.30 0.00 0.00 4.44
1854 6393 1.075536 AGGAAAATCTTGAACGGCCCT 59.924 47.619 0.00 0.00 0.00 5.19
1855 6394 1.472878 GGAAAATCTTGAACGGCCCTC 59.527 52.381 0.00 0.00 0.00 4.30
1880 6419 8.145122 TCAACAAAAGGATACATTTACCCAAAC 58.855 33.333 0.00 0.00 34.78 2.93
1885 6424 3.628942 GGATACATTTACCCAAACCCGAC 59.371 47.826 0.00 0.00 0.00 4.79
1889 6428 2.431954 TTTACCCAAACCCGACACAA 57.568 45.000 0.00 0.00 0.00 3.33
1899 6438 0.108615 CCCGACACAAGCAGGTAGAG 60.109 60.000 0.00 0.00 0.00 2.43
1919 6460 3.827876 GAGTAGAGAATACCTAGGGCCAC 59.172 52.174 14.81 1.97 0.00 5.01
1922 6463 1.614413 GAGAATACCTAGGGCCACGAG 59.386 57.143 14.81 0.00 0.00 4.18
1924 6465 2.158295 AGAATACCTAGGGCCACGAGAT 60.158 50.000 14.81 0.00 0.00 2.75
1944 6485 6.204108 CGAGATAACTCTCTCTAAGGAACTCC 59.796 46.154 0.00 0.00 44.92 3.85
1945 6486 6.975949 AGATAACTCTCTCTAAGGAACTCCA 58.024 40.000 0.00 0.00 38.49 3.86
1958 6499 4.298626 AGGAACTCCACAATATAGCCTCA 58.701 43.478 0.00 0.00 38.89 3.86
1962 6503 7.238514 AGGAACTCCACAATATAGCCTCATAAT 59.761 37.037 0.00 0.00 38.89 1.28
1966 6507 8.439971 ACTCCACAATATAGCCTCATAATTTCA 58.560 33.333 0.00 0.00 0.00 2.69
1977 6518 5.264395 CCTCATAATTTCAACAGAAGGGGT 58.736 41.667 0.00 0.00 0.00 4.95
2074 6617 5.949952 ACAAACAATAGGAAAGGGTCATACC 59.050 40.000 0.00 0.00 37.60 2.73
2194 6737 1.227615 GGCAAAAAGCTGCAGCCAA 60.228 52.632 34.39 0.00 44.52 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.705023 GCCTCTTTTACAGAAATTAGGCCA 59.295 41.667 5.01 0.00 42.07 5.36
44 45 1.977854 GAAATTCCAGTTTGCCCCCTT 59.022 47.619 0.00 0.00 0.00 3.95
50 51 6.758416 AGAAAAAGAGTGAAATTCCAGTTTGC 59.242 34.615 0.00 0.00 0.00 3.68
51 52 7.975616 TCAGAAAAAGAGTGAAATTCCAGTTTG 59.024 33.333 0.00 0.00 0.00 2.93
75 87 9.752961 CCAATATTGCAGTATGATCAATTTTCA 57.247 29.630 10.11 0.00 39.69 2.69
106 118 3.519579 CAATCACATGCGGGCATAAAAA 58.480 40.909 5.74 0.00 34.91 1.94
107 119 2.159128 CCAATCACATGCGGGCATAAAA 60.159 45.455 5.74 0.00 34.91 1.52
108 120 1.408340 CCAATCACATGCGGGCATAAA 59.592 47.619 5.74 0.00 34.91 1.40
109 121 1.031235 CCAATCACATGCGGGCATAA 58.969 50.000 5.74 0.00 34.91 1.90
110 122 0.106769 ACCAATCACATGCGGGCATA 60.107 50.000 5.74 0.00 34.91 3.14
173 185 5.652891 TGGCAAGACTACTTAACAAAAACCA 59.347 36.000 0.00 0.00 34.70 3.67
182 194 3.307480 GGGAGCTTGGCAAGACTACTTAA 60.307 47.826 30.45 0.00 34.70 1.85
189 201 2.747855 CGGGGAGCTTGGCAAGAC 60.748 66.667 30.45 20.94 0.00 3.01
243 256 3.181420 GGAGAGGGCTGGACTAGGTATTA 60.181 52.174 0.00 0.00 0.00 0.98
252 265 1.194781 TGAACTGGAGAGGGCTGGAC 61.195 60.000 0.00 0.00 0.00 4.02
256 269 3.532641 AAAATTGAACTGGAGAGGGCT 57.467 42.857 0.00 0.00 0.00 5.19
379 392 5.346181 AGGTAGTGAACTGCTCCTTATTC 57.654 43.478 0.00 0.00 0.00 1.75
397 410 7.585440 TGGGTCATGTAACATAGTAGTAGGTA 58.415 38.462 0.00 0.00 0.00 3.08
399 412 6.971726 TGGGTCATGTAACATAGTAGTAGG 57.028 41.667 0.00 0.00 0.00 3.18
412 425 4.009370 TGACGATTTGTTGGGTCATGTA 57.991 40.909 0.00 0.00 34.71 2.29
437 450 2.746279 TTTTGTTCTCTTGGGGAGCA 57.254 45.000 0.00 0.00 41.60 4.26
489 502 5.335897 GGTTCTGCTAATTCACTCATTTGCA 60.336 40.000 3.21 3.21 40.92 4.08
490 503 5.098211 GGTTCTGCTAATTCACTCATTTGC 58.902 41.667 0.00 0.00 35.99 3.68
520 533 2.914059 ACCCATCTTGTACGGTATTGC 58.086 47.619 0.00 0.00 0.00 3.56
535 548 2.040606 AGGTCGCCAGGTACCCAT 59.959 61.111 8.74 0.00 36.34 4.00
537 550 4.468689 GCAGGTCGCCAGGTACCC 62.469 72.222 8.74 0.00 36.34 3.69
558 571 3.879998 TGCTCATTAATTAAGCCACGGA 58.120 40.909 14.19 0.00 35.12 4.69
561 574 7.651808 ACATACATGCTCATTAATTAAGCCAC 58.348 34.615 14.19 0.00 35.12 5.01
568 581 7.117812 GGCTACGTACATACATGCTCATTAATT 59.882 37.037 0.00 0.00 0.00 1.40
793 825 2.898920 ATAGGTTGCTGCATGCGCCT 62.899 55.000 24.60 20.82 46.29 5.52
830 862 0.110486 GGTTGTTGGAGGAGAGGCAA 59.890 55.000 0.00 0.00 0.00 4.52
885 944 1.469767 GGGCCGAAATCTACGTACGTT 60.470 52.381 27.92 7.90 0.00 3.99
898 967 1.595929 GTGTTTCAGACGGGCCGAA 60.596 57.895 35.78 14.07 0.00 4.30
905 974 1.190323 GTTGAGCGAGTGTTTCAGACG 59.810 52.381 0.00 0.00 0.00 4.18
916 985 1.084370 GGACGGATTGGTTGAGCGAG 61.084 60.000 0.00 0.00 0.00 5.03
969 1051 0.813184 ACGCCATGCAAATCTTCCTG 59.187 50.000 0.00 0.00 0.00 3.86
1249 5578 6.238211 GCAGCATGAACTAATTGACTAATCGT 60.238 38.462 0.00 0.00 39.69 3.73
1275 5624 0.042708 CGAACTCTATGTGCGCATGC 60.043 55.000 22.84 7.91 41.25 4.06
1282 5631 6.653273 ATCAATGAACACGAACTCTATGTG 57.347 37.500 0.00 0.00 39.47 3.21
1320 5699 4.167268 CGGAAGCTCTCTAACTGTACAAC 58.833 47.826 0.00 0.00 0.00 3.32
1362 5743 7.438160 GCAAACTAACTAAAATTGGAACTGCTT 59.562 33.333 0.00 0.00 0.00 3.91
1516 5913 9.802039 AGGTAAAACAGTTGAAACCTATAATCA 57.198 29.630 11.17 0.00 35.61 2.57
1541 6022 1.317613 TTAGCCACACAACCAAGCAG 58.682 50.000 0.00 0.00 0.00 4.24
1542 6023 1.769026 TTTAGCCACACAACCAAGCA 58.231 45.000 0.00 0.00 0.00 3.91
1543 6024 2.159170 TGTTTTAGCCACACAACCAAGC 60.159 45.455 0.00 0.00 0.00 4.01
1569 6050 2.066262 CGGTTTTGTGCTCACTCGTAT 58.934 47.619 1.47 0.00 0.00 3.06
1572 6053 1.569493 CCGGTTTTGTGCTCACTCG 59.431 57.895 0.00 0.00 0.00 4.18
1584 6065 3.005367 CAGTGGTGAAAATTAGCCGGTTT 59.995 43.478 1.90 0.00 0.00 3.27
1587 6068 2.159382 ACAGTGGTGAAAATTAGCCGG 58.841 47.619 0.00 0.00 0.00 6.13
1588 6069 3.252215 TCAACAGTGGTGAAAATTAGCCG 59.748 43.478 8.85 0.00 0.00 5.52
1591 6072 6.618287 TCAGTCAACAGTGGTGAAAATTAG 57.382 37.500 13.66 0.00 0.00 1.73
1592 6073 8.729756 CATATCAGTCAACAGTGGTGAAAATTA 58.270 33.333 13.66 3.67 0.00 1.40
1593 6074 7.596494 CATATCAGTCAACAGTGGTGAAAATT 58.404 34.615 13.66 1.35 0.00 1.82
1594 6075 6.349611 GCATATCAGTCAACAGTGGTGAAAAT 60.350 38.462 13.66 9.19 0.00 1.82
1605 6086 4.758773 TCATCCTGCATATCAGTCAACA 57.241 40.909 0.00 0.00 41.25 3.33
1620 6101 7.886629 TGTAGTACCGTATAAACTTCATCCT 57.113 36.000 0.00 0.00 0.00 3.24
1667 6205 9.727859 TCATTTTGTTCATCCATGATTTTTCAT 57.272 25.926 0.00 0.00 36.56 2.57
1700 6238 5.510430 TCTATGAGTTAGGAGAGCTCACAA 58.490 41.667 17.77 0.00 41.33 3.33
1708 6246 5.944599 AGTGACGTTTCTATGAGTTAGGAGA 59.055 40.000 0.00 0.00 0.00 3.71
1710 6248 5.475909 ACAGTGACGTTTCTATGAGTTAGGA 59.524 40.000 0.00 0.00 0.00 2.94
1726 6264 2.288213 TGCTTTCTGACCTACAGTGACG 60.288 50.000 0.00 0.00 45.86 4.35
1734 6272 6.791867 AGTGTATGTATGCTTTCTGACCTA 57.208 37.500 0.00 0.00 0.00 3.08
1760 6298 5.480422 ACCGGCCTTTTGATTTAGAAGAAAT 59.520 36.000 0.00 0.00 0.00 2.17
1761 6299 4.830600 ACCGGCCTTTTGATTTAGAAGAAA 59.169 37.500 0.00 0.00 0.00 2.52
1773 6311 3.317711 TCATATATGCAACCGGCCTTTTG 59.682 43.478 7.92 4.89 43.89 2.44
1805 6344 9.724839 GATCATCTGAGTTGTTTAGTAGTAGTC 57.275 37.037 0.00 0.00 0.00 2.59
1811 6350 8.059461 TCCTAGGATCATCTGAGTTGTTTAGTA 58.941 37.037 7.62 0.00 0.00 1.82
1812 6351 6.897966 TCCTAGGATCATCTGAGTTGTTTAGT 59.102 38.462 7.62 0.00 0.00 2.24
1813 6352 7.353414 TCCTAGGATCATCTGAGTTGTTTAG 57.647 40.000 7.62 0.00 0.00 1.85
1841 6380 0.181587 TTGTTGAGGGCCGTTCAAGA 59.818 50.000 18.49 15.50 35.39 3.02
1850 6389 5.405935 AAATGTATCCTTTTGTTGAGGGC 57.594 39.130 0.00 0.00 34.93 5.19
1854 6393 7.841282 TTGGGTAAATGTATCCTTTTGTTGA 57.159 32.000 0.00 0.00 30.88 3.18
1855 6394 7.386573 GGTTTGGGTAAATGTATCCTTTTGTTG 59.613 37.037 0.00 0.00 30.88 3.33
1880 6419 0.108615 CTCTACCTGCTTGTGTCGGG 60.109 60.000 0.00 0.00 36.07 5.14
1885 6424 5.590530 ATTCTCTACTCTACCTGCTTGTG 57.409 43.478 0.00 0.00 0.00 3.33
1889 6428 5.656549 AGGTATTCTCTACTCTACCTGCT 57.343 43.478 0.00 0.00 41.81 4.24
1899 6438 2.557490 CGTGGCCCTAGGTATTCTCTAC 59.443 54.545 8.29 0.00 0.00 2.59
1919 6460 8.117813 TGGAGTTCCTTAGAGAGAGTTATCTCG 61.118 44.444 0.00 0.00 45.71 4.04
1922 6463 6.603997 TGTGGAGTTCCTTAGAGAGAGTTATC 59.396 42.308 0.00 0.00 36.82 1.75
1924 6465 5.888901 TGTGGAGTTCCTTAGAGAGAGTTA 58.111 41.667 0.00 0.00 36.82 2.24
1944 6485 9.888878 CTGTTGAAATTATGAGGCTATATTGTG 57.111 33.333 0.00 0.00 0.00 3.33
1945 6486 9.851686 TCTGTTGAAATTATGAGGCTATATTGT 57.148 29.630 0.00 0.00 0.00 2.71
1958 6499 3.769300 GGCACCCCTTCTGTTGAAATTAT 59.231 43.478 0.00 0.00 0.00 1.28
1962 6503 3.125520 GGCACCCCTTCTGTTGAAA 57.874 52.632 0.00 0.00 0.00 2.69
1997 6538 5.303259 TGCATGCCATTGGTCTAGTTATA 57.697 39.130 16.68 0.00 0.00 0.98
2042 6583 6.183360 CCCTTTCCTATTGTTTGTCGTCATAC 60.183 42.308 0.00 0.00 0.00 2.39
2097 6640 7.989947 TTCCTTCTCTAACCCTTGTACATAT 57.010 36.000 0.00 0.00 0.00 1.78
2194 6737 9.147732 AGAAAACTACTCCAAAAATTGAAGGAT 57.852 29.630 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.