Multiple sequence alignment - TraesCS4D01G277100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G277100 chr4D 100.000 5046 0 0 1 5046 449200671 449205716 0.000000e+00 9319.0
1 TraesCS4D01G277100 chr4D 96.288 458 10 5 4590 5046 494789891 494790342 0.000000e+00 745.0
2 TraesCS4D01G277100 chr4D 95.154 454 18 4 4594 5046 4342919 4343369 0.000000e+00 713.0
3 TraesCS4D01G277100 chr4B 95.643 2984 96 22 1621 4591 561589826 561592788 0.000000e+00 4759.0
4 TraesCS4D01G277100 chr4B 94.351 1186 43 14 450 1622 561588611 561589785 0.000000e+00 1797.0
5 TraesCS4D01G277100 chr4B 98.039 357 7 0 1 357 561587920 561588276 5.550000e-174 621.0
6 TraesCS4D01G277100 chr4B 94.444 36 1 1 1940 1974 278378163 278378198 3.000000e-03 54.7
7 TraesCS4D01G277100 chr4A 93.403 1440 52 16 505 1925 17484367 17482952 0.000000e+00 2093.0
8 TraesCS4D01G277100 chr4A 92.143 1400 96 8 2986 4377 17481887 17480494 0.000000e+00 1964.0
9 TraesCS4D01G277100 chr4A 94.904 471 12 8 1 468 17484827 17484366 0.000000e+00 726.0
10 TraesCS4D01G277100 chr4A 95.186 457 17 4 4592 5046 724606517 724606970 0.000000e+00 717.0
11 TraesCS4D01G277100 chr4A 92.000 175 9 2 4421 4591 17480440 17480267 1.820000e-59 241.0
12 TraesCS4D01G277100 chr4A 89.349 169 13 4 2372 2537 17482497 17482331 1.840000e-49 207.0
13 TraesCS4D01G277100 chr4A 88.710 124 10 3 2232 2351 17482686 17482563 1.130000e-31 148.0
14 TraesCS4D01G277100 chr4A 88.983 118 10 2 1972 2086 17482950 17482833 5.270000e-30 143.0
15 TraesCS4D01G277100 chr4A 88.889 72 5 3 2213 2283 17482742 17482673 9.000000e-13 86.1
16 TraesCS4D01G277100 chr4A 79.798 99 11 5 3491 3584 90422339 90422433 4.220000e-06 63.9
17 TraesCS4D01G277100 chr4A 94.444 36 1 1 4397 4431 17480507 17480472 3.000000e-03 54.7
18 TraesCS4D01G277100 chrUn 95.833 456 15 4 4592 5046 227962053 227962505 0.000000e+00 734.0
19 TraesCS4D01G277100 chr2D 95.833 456 15 4 4592 5046 622496519 622496971 0.000000e+00 734.0
20 TraesCS4D01G277100 chr5D 95.633 458 14 5 4592 5046 402707158 402706704 0.000000e+00 730.0
21 TraesCS4D01G277100 chr2B 95.374 454 17 4 4594 5046 763333572 763334022 0.000000e+00 719.0
22 TraesCS4D01G277100 chr6D 94.978 458 19 4 4590 5046 11489860 11489406 0.000000e+00 715.0
23 TraesCS4D01G277100 chr1D 94.760 458 20 4 4590 5046 483886325 483885871 0.000000e+00 710.0
24 TraesCS4D01G277100 chr1D 83.230 644 73 15 1012 1622 392949740 392949099 4.410000e-155 558.0
25 TraesCS4D01G277100 chr1D 90.968 155 14 0 1759 1913 392949031 392948877 5.120000e-50 209.0
26 TraesCS4D01G277100 chr1D 79.470 151 29 2 3403 3552 223387594 223387445 6.910000e-19 106.0
27 TraesCS4D01G277100 chr1A 84.311 631 65 16 1004 1602 492271806 492272434 2.020000e-163 586.0
28 TraesCS4D01G277100 chr1A 90.323 155 15 0 1759 1913 492272532 492272686 2.380000e-48 204.0
29 TraesCS4D01G277100 chr1A 81.633 147 25 2 3407 3552 290344951 290344806 2.470000e-23 121.0
30 TraesCS4D01G277100 chr1A 88.889 54 6 0 1922 1975 570413370 570413317 3.260000e-07 67.6
31 TraesCS4D01G277100 chr1A 87.719 57 6 1 1920 1975 570373729 570373673 1.170000e-06 65.8
32 TraesCS4D01G277100 chr1B 83.668 349 54 3 3737 4085 529706088 529706433 4.870000e-85 326.0
33 TraesCS4D01G277100 chr1B 91.772 158 13 0 1756 1913 529705837 529705994 2.360000e-53 220.0
34 TraesCS4D01G277100 chr5B 79.283 251 40 10 3349 3592 89303328 89303083 1.120000e-36 165.0
35 TraesCS4D01G277100 chr5B 89.000 100 10 1 3494 3592 527245299 527245398 6.860000e-24 122.0
36 TraesCS4D01G277100 chr5A 79.524 210 38 5 3345 3552 367850990 367851196 1.460000e-30 145.0
37 TraesCS4D01G277100 chr2A 82.292 96 15 2 3497 3592 749455065 749454972 1.160000e-11 82.4
38 TraesCS4D01G277100 chr2A 88.889 54 6 0 1922 1975 605104906 605104959 3.260000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G277100 chr4D 449200671 449205716 5045 False 9319.000000 9319 100.000 1 5046 1 chr4D.!!$F2 5045
1 TraesCS4D01G277100 chr4B 561587920 561592788 4868 False 2392.333333 4759 96.011 1 4591 3 chr4B.!!$F2 4590
2 TraesCS4D01G277100 chr4A 17480267 17484827 4560 True 629.200000 2093 91.425 1 4591 9 chr4A.!!$R1 4590
3 TraesCS4D01G277100 chr1D 392948877 392949740 863 True 383.500000 558 87.099 1012 1913 2 chr1D.!!$R3 901
4 TraesCS4D01G277100 chr1A 492271806 492272686 880 False 395.000000 586 87.317 1004 1913 2 chr1A.!!$F1 909
5 TraesCS4D01G277100 chr1B 529705837 529706433 596 False 273.000000 326 87.720 1756 4085 2 chr1B.!!$F1 2329

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
545 837 0.612453 GAGGGAGAGACGGACAGGTT 60.612 60.000 0.00 0.0 0.0 3.50 F
1241 1565 1.070289 GGACAAGGACCTGTTCTTCGT 59.930 52.381 0.00 0.0 0.0 3.85 F
2062 2495 0.725784 GCGTGCACAATCGACAAAGG 60.726 55.000 18.64 0.0 0.0 3.11 F
3286 3901 0.249657 TGTTTTTGCATTCCACCGGC 60.250 50.000 0.00 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1392 1716 2.678580 TCGACGATGAGGGTGGCA 60.679 61.111 0.00 0.00 0.00 4.92 R
2846 3375 0.035152 AGATCATGGTTTGCAGGCGA 60.035 50.000 0.00 0.00 0.00 5.54 R
3320 3935 1.336795 GGTGGCTGTTAAACATGTGGC 60.337 52.381 0.00 0.00 0.00 5.01 R
4640 5311 0.037303 TCTCAAAGCAAGGCTGGAGG 59.963 55.000 15.67 3.44 39.62 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
346 350 3.131755 TCATGCATGTGTCAGGTAGAGAG 59.868 47.826 25.43 0.00 0.00 3.20
411 417 5.765182 AGAGAGAGAGCTAGCTAAGTTCATC 59.235 44.000 19.38 13.84 37.88 2.92
415 421 4.285863 AGAGCTAGCTAAGTTCATCCACT 58.714 43.478 19.38 2.53 37.88 4.00
437 443 6.203530 CACTACTTGAGTTTGAAAGATGCTCA 59.796 38.462 0.00 0.00 35.64 4.26
445 451 5.296780 AGTTTGAAAGATGCTCAAAGTCGAA 59.703 36.000 0.00 0.00 40.72 3.71
448 740 4.212004 TGAAAGATGCTCAAAGTCGAAGTG 59.788 41.667 0.00 0.00 0.00 3.16
492 784 5.683876 AGCATATACTATGCCCCAGTAAG 57.316 43.478 13.92 0.00 45.59 2.34
503 795 2.369394 CCCCAGTAAGCATCACCTTTC 58.631 52.381 0.00 0.00 0.00 2.62
528 820 2.417933 CGGAGAAAAATGCAGAGTGGAG 59.582 50.000 0.00 0.00 0.00 3.86
545 837 0.612453 GAGGGAGAGACGGACAGGTT 60.612 60.000 0.00 0.00 0.00 3.50
548 840 1.340795 GGGAGAGACGGACAGGTTCTA 60.341 57.143 0.00 0.00 0.00 2.10
563 855 1.747355 GTTCTAGCTGCATGCATGGTT 59.253 47.619 27.34 11.22 45.94 3.67
565 857 1.746787 TCTAGCTGCATGCATGGTTTG 59.253 47.619 27.34 9.56 45.94 2.93
733 1025 9.479549 TCCACATGACATATATAGCTAGATGAA 57.520 33.333 11.16 4.12 32.16 2.57
792 1084 8.300286 TGGCAAATGTATCTTTATTTCGTTTGA 58.700 29.630 10.84 0.00 37.25 2.69
846 1140 3.128349 TGTTGACCAGTTCTTACGAAGC 58.872 45.455 0.00 0.00 0.00 3.86
847 1141 3.181469 TGTTGACCAGTTCTTACGAAGCT 60.181 43.478 0.00 0.00 0.00 3.74
848 1142 3.299340 TGACCAGTTCTTACGAAGCTC 57.701 47.619 0.00 0.00 0.00 4.09
927 1231 5.512942 TTCCAGTTCATACCCTGATCAAA 57.487 39.130 0.00 0.00 32.72 2.69
928 1232 5.715439 TCCAGTTCATACCCTGATCAAAT 57.285 39.130 0.00 0.00 32.72 2.32
930 1234 4.823989 CCAGTTCATACCCTGATCAAATCC 59.176 45.833 0.00 0.00 32.72 3.01
932 1236 3.769739 TCATACCCTGATCAAATCCGG 57.230 47.619 0.00 0.00 33.88 5.14
933 1237 3.313791 TCATACCCTGATCAAATCCGGA 58.686 45.455 6.61 6.61 35.89 5.14
945 1249 4.682787 TCAAATCCGGAGCTATATATGCG 58.317 43.478 11.34 0.00 35.28 4.73
1050 1368 1.431440 CCTGCTCCTCTTCGTCTCG 59.569 63.158 0.00 0.00 0.00 4.04
1241 1565 1.070289 GGACAAGGACCTGTTCTTCGT 59.930 52.381 0.00 0.00 0.00 3.85
1299 1623 1.450312 CTTCGTGCACATCCTCCCC 60.450 63.158 18.64 0.00 0.00 4.81
1675 2105 2.270923 GTGCATGCATACTCGACTGAA 58.729 47.619 25.64 0.00 0.00 3.02
2012 2442 8.262933 CAGAGAATGGTATGCATATATTCCTCA 58.737 37.037 26.52 13.11 0.00 3.86
2062 2495 0.725784 GCGTGCACAATCGACAAAGG 60.726 55.000 18.64 0.00 0.00 3.11
2196 2629 8.641499 AAATCTGAAATTTAGCGACAAAACAA 57.359 26.923 0.00 0.00 0.00 2.83
2331 2799 7.173390 TGGAATGTGACAAAATTCATACGTGTA 59.827 33.333 0.00 0.00 35.00 2.90
2395 2917 5.468409 TGTCATGTGCAAAAATAACGAGAGA 59.532 36.000 0.00 0.00 0.00 3.10
2396 2918 6.017523 TGTCATGTGCAAAAATAACGAGAGAA 60.018 34.615 0.00 0.00 0.00 2.87
2427 2949 7.062749 TGATTCCTTCTGCCGTATTACTATT 57.937 36.000 0.00 0.00 0.00 1.73
2703 3230 4.523943 TGTGGCAGCTGAAAAATAGTCAAT 59.476 37.500 20.43 0.00 0.00 2.57
2941 3470 7.170277 GGTTTCATAGTTTGGGGTTCTAGTTA 58.830 38.462 0.00 0.00 0.00 2.24
2984 3514 7.923878 TCAGGGTTCAAAACTAAAAATGTTAGC 59.076 33.333 0.00 0.00 0.00 3.09
3088 3702 9.625747 AATTTACACCAAAATGGAATTCAAGTT 57.374 25.926 7.93 0.00 40.96 2.66
3286 3901 0.249657 TGTTTTTGCATTCCACCGGC 60.250 50.000 0.00 0.00 0.00 6.13
3296 3911 1.320507 TTCCACCGGCTTTACAAACC 58.679 50.000 0.00 0.00 0.00 3.27
3320 3935 4.672413 GCAAGAAGTTCAAGTGATTTGACG 59.328 41.667 5.50 0.00 45.22 4.35
3331 3946 3.818210 AGTGATTTGACGCCACATGTTTA 59.182 39.130 0.00 0.00 33.53 2.01
3448 4066 5.545063 TCAAGTCATCAAGTACCAGACAA 57.455 39.130 0.00 0.00 0.00 3.18
3476 4094 8.825667 ATACAAATAAAAAGAAACGCAACCAT 57.174 26.923 0.00 0.00 0.00 3.55
3483 4101 7.406799 AAAAAGAAACGCAACCATAATTGAG 57.593 32.000 0.00 0.00 35.70 3.02
3485 4103 6.811253 AAGAAACGCAACCATAATTGAGTA 57.189 33.333 0.00 0.00 41.08 2.59
3487 4105 7.016361 AGAAACGCAACCATAATTGAGTATC 57.984 36.000 0.00 0.00 41.08 2.24
3572 4195 1.870580 CGCTACACAACCGTTTCCAGA 60.871 52.381 0.00 0.00 0.00 3.86
3594 4217 1.004080 CTGCACCCAGAGGTCACTG 60.004 63.158 0.00 0.00 46.45 3.66
4070 4693 6.542735 AGAAATCCTCCTCGGCTAAAAATAAC 59.457 38.462 0.00 0.00 0.00 1.89
4191 4816 7.226523 TGTGCATATATACATCAAACTCCACAC 59.773 37.037 0.00 0.00 0.00 3.82
4280 4905 5.088680 TCATGCATGAGTGTTCATACTGA 57.911 39.130 25.42 0.00 42.12 3.41
4302 4927 1.881973 GTGAGTGTGGTGCATGACAAT 59.118 47.619 0.00 1.86 0.00 2.71
4308 4933 4.523943 AGTGTGGTGCATGACAATTATGTT 59.476 37.500 0.00 0.00 40.74 2.71
4378 5003 6.373186 AGCTTTACAACTACCAAAACACTC 57.627 37.500 0.00 0.00 0.00 3.51
4391 5016 1.308998 AACACTCACTCGCCCAAAAG 58.691 50.000 0.00 0.00 0.00 2.27
4397 5022 2.360801 CTCACTCGCCCAAAAGGAAAAA 59.639 45.455 0.00 0.00 38.24 1.94
4591 5262 8.653338 CAATACCAACAGTAGTGTATGTACAAC 58.347 37.037 3.00 0.31 41.16 3.32
4592 5263 6.164417 ACCAACAGTAGTGTATGTACAACA 57.836 37.500 3.00 3.18 38.04 3.33
4593 5264 5.987347 ACCAACAGTAGTGTATGTACAACAC 59.013 40.000 22.82 22.82 46.09 3.32
4602 5273 6.613755 GTGTATGTACAACACAAAGTTCCT 57.386 37.500 24.20 0.66 45.26 3.36
4603 5274 7.023197 GTGTATGTACAACACAAAGTTCCTT 57.977 36.000 24.20 0.29 45.26 3.36
4604 5275 7.477494 GTGTATGTACAACACAAAGTTCCTTT 58.523 34.615 24.20 0.00 45.26 3.11
4605 5276 7.431084 GTGTATGTACAACACAAAGTTCCTTTG 59.569 37.037 24.20 13.62 45.06 2.77
4606 5277 7.121463 TGTATGTACAACACAAAGTTCCTTTGT 59.879 33.333 14.80 14.80 46.70 2.83
4614 5285 4.756084 CAAAGTTCCTTTGTAGCTCAGG 57.244 45.455 8.25 0.00 43.85 3.86
4615 5286 2.481289 AGTTCCTTTGTAGCTCAGGC 57.519 50.000 0.00 0.00 39.06 4.85
4616 5287 3.181439 AAAGTTCCTTTGTAGCTCAGGCT 60.181 43.478 0.00 0.00 41.04 4.58
4617 5288 4.041691 AAAGTTCCTTTGTAGCTCAGGCTA 59.958 41.667 0.00 0.00 39.78 3.93
4626 5297 3.086733 GCTCAGGCTACATGGAACC 57.913 57.895 0.00 0.00 35.22 3.62
4627 5298 0.543749 GCTCAGGCTACATGGAACCT 59.456 55.000 0.00 0.00 35.22 3.50
4628 5299 1.474143 GCTCAGGCTACATGGAACCTC 60.474 57.143 0.00 0.00 35.22 3.85
4629 5300 2.114616 CTCAGGCTACATGGAACCTCT 58.885 52.381 0.00 0.00 0.00 3.69
4630 5301 2.503356 CTCAGGCTACATGGAACCTCTT 59.497 50.000 0.00 0.00 0.00 2.85
4631 5302 3.706594 CTCAGGCTACATGGAACCTCTTA 59.293 47.826 0.00 0.00 0.00 2.10
4632 5303 4.298626 TCAGGCTACATGGAACCTCTTAT 58.701 43.478 0.00 0.00 0.00 1.73
4633 5304 4.345257 TCAGGCTACATGGAACCTCTTATC 59.655 45.833 0.00 0.00 0.00 1.75
4634 5305 3.648545 AGGCTACATGGAACCTCTTATCC 59.351 47.826 0.00 0.00 36.21 2.59
4635 5306 3.648545 GGCTACATGGAACCTCTTATCCT 59.351 47.826 0.00 0.00 36.64 3.24
4636 5307 4.262678 GGCTACATGGAACCTCTTATCCTC 60.263 50.000 0.00 0.00 36.64 3.71
4637 5308 4.345257 GCTACATGGAACCTCTTATCCTCA 59.655 45.833 0.00 0.00 36.64 3.86
4638 5309 5.163301 GCTACATGGAACCTCTTATCCTCAA 60.163 44.000 0.00 0.00 36.64 3.02
4639 5310 5.104259 ACATGGAACCTCTTATCCTCAAC 57.896 43.478 0.00 0.00 36.64 3.18
4640 5311 4.080299 ACATGGAACCTCTTATCCTCAACC 60.080 45.833 0.00 0.00 36.64 3.77
4641 5312 2.844348 TGGAACCTCTTATCCTCAACCC 59.156 50.000 0.00 0.00 36.64 4.11
4642 5313 3.116174 GGAACCTCTTATCCTCAACCCT 58.884 50.000 0.00 0.00 32.75 4.34
4643 5314 3.134985 GGAACCTCTTATCCTCAACCCTC 59.865 52.174 0.00 0.00 32.75 4.30
4644 5315 2.765502 ACCTCTTATCCTCAACCCTCC 58.234 52.381 0.00 0.00 0.00 4.30
4645 5316 2.045885 ACCTCTTATCCTCAACCCTCCA 59.954 50.000 0.00 0.00 0.00 3.86
4646 5317 2.703007 CCTCTTATCCTCAACCCTCCAG 59.297 54.545 0.00 0.00 0.00 3.86
4647 5318 2.103941 CTCTTATCCTCAACCCTCCAGC 59.896 54.545 0.00 0.00 0.00 4.85
4648 5319 1.141858 CTTATCCTCAACCCTCCAGCC 59.858 57.143 0.00 0.00 0.00 4.85
4649 5320 0.343372 TATCCTCAACCCTCCAGCCT 59.657 55.000 0.00 0.00 0.00 4.58
4650 5321 0.551131 ATCCTCAACCCTCCAGCCTT 60.551 55.000 0.00 0.00 0.00 4.35
4651 5322 1.001641 CCTCAACCCTCCAGCCTTG 60.002 63.158 0.00 0.00 0.00 3.61
4652 5323 1.676967 CTCAACCCTCCAGCCTTGC 60.677 63.158 0.00 0.00 0.00 4.01
4653 5324 2.134630 CTCAACCCTCCAGCCTTGCT 62.135 60.000 0.00 0.00 40.77 3.91
4654 5325 1.228675 CAACCCTCCAGCCTTGCTT 60.229 57.895 0.00 0.00 36.40 3.91
4655 5326 0.829182 CAACCCTCCAGCCTTGCTTT 60.829 55.000 0.00 0.00 36.40 3.51
4656 5327 0.829182 AACCCTCCAGCCTTGCTTTG 60.829 55.000 0.00 0.00 36.40 2.77
4657 5328 1.075482 CCCTCCAGCCTTGCTTTGA 59.925 57.895 0.00 0.00 36.40 2.69
4658 5329 0.964358 CCCTCCAGCCTTGCTTTGAG 60.964 60.000 5.73 5.73 36.40 3.02
4659 5330 0.037303 CCTCCAGCCTTGCTTTGAGA 59.963 55.000 11.86 0.00 37.23 3.27
4660 5331 1.340795 CCTCCAGCCTTGCTTTGAGAT 60.341 52.381 11.86 0.00 37.23 2.75
4661 5332 2.015587 CTCCAGCCTTGCTTTGAGATC 58.984 52.381 6.56 0.00 37.23 2.75
4662 5333 1.101331 CCAGCCTTGCTTTGAGATCC 58.899 55.000 0.00 0.00 36.40 3.36
4663 5334 0.731417 CAGCCTTGCTTTGAGATCCG 59.269 55.000 0.00 0.00 36.40 4.18
4664 5335 0.326264 AGCCTTGCTTTGAGATCCGT 59.674 50.000 0.00 0.00 33.89 4.69
4665 5336 1.555075 AGCCTTGCTTTGAGATCCGTA 59.445 47.619 0.00 0.00 33.89 4.02
4666 5337 1.666189 GCCTTGCTTTGAGATCCGTAC 59.334 52.381 0.00 0.00 0.00 3.67
4667 5338 2.678190 GCCTTGCTTTGAGATCCGTACT 60.678 50.000 0.00 0.00 0.00 2.73
4668 5339 3.190874 CCTTGCTTTGAGATCCGTACTC 58.809 50.000 0.00 0.00 35.26 2.59
4669 5340 3.118956 CCTTGCTTTGAGATCCGTACTCT 60.119 47.826 0.00 0.00 35.66 3.24
4670 5341 3.784701 TGCTTTGAGATCCGTACTCTC 57.215 47.619 4.13 4.13 39.69 3.20
4671 5342 2.427453 TGCTTTGAGATCCGTACTCTCC 59.573 50.000 7.85 0.00 38.70 3.71
4672 5343 2.427453 GCTTTGAGATCCGTACTCTCCA 59.573 50.000 7.85 0.00 38.70 3.86
4673 5344 3.119101 GCTTTGAGATCCGTACTCTCCAA 60.119 47.826 7.85 3.49 38.70 3.53
4674 5345 4.425520 CTTTGAGATCCGTACTCTCCAAC 58.574 47.826 7.85 0.00 38.70 3.77
4675 5346 3.367646 TGAGATCCGTACTCTCCAACT 57.632 47.619 7.85 0.00 38.70 3.16
4676 5347 4.498894 TGAGATCCGTACTCTCCAACTA 57.501 45.455 7.85 0.00 38.70 2.24
4677 5348 4.851843 TGAGATCCGTACTCTCCAACTAA 58.148 43.478 7.85 0.00 38.70 2.24
4678 5349 4.639310 TGAGATCCGTACTCTCCAACTAAC 59.361 45.833 7.85 0.00 38.70 2.34
4679 5350 4.857679 AGATCCGTACTCTCCAACTAACT 58.142 43.478 0.00 0.00 0.00 2.24
4680 5351 5.262804 AGATCCGTACTCTCCAACTAACTT 58.737 41.667 0.00 0.00 0.00 2.66
4681 5352 6.421485 AGATCCGTACTCTCCAACTAACTTA 58.579 40.000 0.00 0.00 0.00 2.24
4682 5353 5.886960 TCCGTACTCTCCAACTAACTTAC 57.113 43.478 0.00 0.00 0.00 2.34
4683 5354 5.316167 TCCGTACTCTCCAACTAACTTACA 58.684 41.667 0.00 0.00 0.00 2.41
4684 5355 5.769662 TCCGTACTCTCCAACTAACTTACAA 59.230 40.000 0.00 0.00 0.00 2.41
4685 5356 5.860716 CCGTACTCTCCAACTAACTTACAAC 59.139 44.000 0.00 0.00 0.00 3.32
4686 5357 6.294397 CCGTACTCTCCAACTAACTTACAACT 60.294 42.308 0.00 0.00 0.00 3.16
4687 5358 7.094634 CCGTACTCTCCAACTAACTTACAACTA 60.095 40.741 0.00 0.00 0.00 2.24
4688 5359 7.961827 CGTACTCTCCAACTAACTTACAACTAG 59.038 40.741 0.00 0.00 0.00 2.57
4689 5360 9.007901 GTACTCTCCAACTAACTTACAACTAGA 57.992 37.037 0.00 0.00 0.00 2.43
4690 5361 8.474710 ACTCTCCAACTAACTTACAACTAGAA 57.525 34.615 0.00 0.00 0.00 2.10
4691 5362 8.578151 ACTCTCCAACTAACTTACAACTAGAAG 58.422 37.037 0.00 0.00 0.00 2.85
4692 5363 8.701908 TCTCCAACTAACTTACAACTAGAAGA 57.298 34.615 0.00 0.00 0.00 2.87
4693 5364 9.310449 TCTCCAACTAACTTACAACTAGAAGAT 57.690 33.333 0.00 0.00 0.00 2.40
4694 5365 9.930693 CTCCAACTAACTTACAACTAGAAGATT 57.069 33.333 0.00 0.00 0.00 2.40
4743 5414 9.868277 TGAAACAACATATGAACTTCAAACTTT 57.132 25.926 10.38 0.00 0.00 2.66
4745 5416 7.698836 ACAACATATGAACTTCAAACTTTGC 57.301 32.000 10.38 0.00 0.00 3.68
4746 5417 7.264221 ACAACATATGAACTTCAAACTTTGCA 58.736 30.769 10.38 0.00 0.00 4.08
4747 5418 7.436080 ACAACATATGAACTTCAAACTTTGCAG 59.564 33.333 10.38 0.17 0.00 4.41
4748 5419 7.275888 ACATATGAACTTCAAACTTTGCAGA 57.724 32.000 10.38 0.00 0.00 4.26
4749 5420 7.889469 ACATATGAACTTCAAACTTTGCAGAT 58.111 30.769 10.38 0.00 0.00 2.90
4750 5421 8.025445 ACATATGAACTTCAAACTTTGCAGATC 58.975 33.333 10.38 6.38 0.00 2.75
4751 5422 4.847633 TGAACTTCAAACTTTGCAGATCG 58.152 39.130 8.00 0.00 30.58 3.69
4752 5423 4.574421 TGAACTTCAAACTTTGCAGATCGA 59.426 37.500 8.00 0.00 30.58 3.59
4753 5424 5.065859 TGAACTTCAAACTTTGCAGATCGAA 59.934 36.000 8.00 0.00 30.58 3.71
4754 5425 4.848757 ACTTCAAACTTTGCAGATCGAAC 58.151 39.130 8.00 0.00 0.00 3.95
4755 5426 4.335315 ACTTCAAACTTTGCAGATCGAACA 59.665 37.500 8.00 0.00 0.00 3.18
4756 5427 4.891627 TCAAACTTTGCAGATCGAACAA 57.108 36.364 0.00 0.00 0.00 2.83
4757 5428 5.242069 TCAAACTTTGCAGATCGAACAAA 57.758 34.783 9.48 9.48 0.00 2.83
4758 5429 5.034152 TCAAACTTTGCAGATCGAACAAAC 58.966 37.500 6.71 0.00 0.00 2.93
4759 5430 4.630894 AACTTTGCAGATCGAACAAACA 57.369 36.364 6.71 0.00 0.00 2.83
4760 5431 4.836125 ACTTTGCAGATCGAACAAACAT 57.164 36.364 6.71 0.00 0.00 2.71
4761 5432 5.186996 ACTTTGCAGATCGAACAAACATT 57.813 34.783 6.71 0.00 0.00 2.71
4762 5433 6.312399 ACTTTGCAGATCGAACAAACATTA 57.688 33.333 6.71 0.00 0.00 1.90
4763 5434 6.373779 ACTTTGCAGATCGAACAAACATTAG 58.626 36.000 6.71 1.57 0.00 1.73
4764 5435 6.204688 ACTTTGCAGATCGAACAAACATTAGA 59.795 34.615 6.71 0.00 0.00 2.10
4765 5436 6.552859 TTGCAGATCGAACAAACATTAGAA 57.447 33.333 0.00 0.00 0.00 2.10
4766 5437 5.927030 TGCAGATCGAACAAACATTAGAAC 58.073 37.500 0.00 0.00 0.00 3.01
4767 5438 5.468409 TGCAGATCGAACAAACATTAGAACA 59.532 36.000 0.00 0.00 0.00 3.18
4768 5439 6.149308 TGCAGATCGAACAAACATTAGAACAT 59.851 34.615 0.00 0.00 0.00 2.71
4769 5440 7.333174 TGCAGATCGAACAAACATTAGAACATA 59.667 33.333 0.00 0.00 0.00 2.29
4770 5441 8.175069 GCAGATCGAACAAACATTAGAACATAA 58.825 33.333 0.00 0.00 0.00 1.90
4775 5446 9.605955 TCGAACAAACATTAGAACATAAATGTG 57.394 29.630 1.78 0.00 43.66 3.21
4776 5447 9.393249 CGAACAAACATTAGAACATAAATGTGT 57.607 29.630 1.78 0.00 43.66 3.72
4912 5583 9.739276 TTTTTCCAGATTGTAGTCAGAATGTAT 57.261 29.630 0.00 0.00 37.40 2.29
4913 5584 9.739276 TTTTCCAGATTGTAGTCAGAATGTATT 57.261 29.630 0.00 0.00 37.40 1.89
4914 5585 8.722480 TTCCAGATTGTAGTCAGAATGTATTG 57.278 34.615 0.00 0.00 37.40 1.90
4915 5586 7.851228 TCCAGATTGTAGTCAGAATGTATTGT 58.149 34.615 0.00 0.00 37.40 2.71
4916 5587 8.321353 TCCAGATTGTAGTCAGAATGTATTGTT 58.679 33.333 0.00 0.00 37.40 2.83
4917 5588 8.393366 CCAGATTGTAGTCAGAATGTATTGTTG 58.607 37.037 0.00 0.00 37.40 3.33
4918 5589 8.939929 CAGATTGTAGTCAGAATGTATTGTTGT 58.060 33.333 0.00 0.00 37.40 3.32
4919 5590 9.507329 AGATTGTAGTCAGAATGTATTGTTGTT 57.493 29.630 0.00 0.00 37.40 2.83
4920 5591 9.760660 GATTGTAGTCAGAATGTATTGTTGTTC 57.239 33.333 0.00 0.00 37.40 3.18
4921 5592 8.902540 TTGTAGTCAGAATGTATTGTTGTTCT 57.097 30.769 0.00 0.00 37.40 3.01
4922 5593 8.310406 TGTAGTCAGAATGTATTGTTGTTCTG 57.690 34.615 7.45 7.45 45.47 3.02
4923 5594 6.246420 AGTCAGAATGTATTGTTGTTCTGC 57.754 37.500 8.63 5.20 44.38 4.26
4924 5595 5.764686 AGTCAGAATGTATTGTTGTTCTGCA 59.235 36.000 8.63 0.00 44.38 4.41
4925 5596 6.262944 AGTCAGAATGTATTGTTGTTCTGCAA 59.737 34.615 8.63 0.00 44.38 4.08
4926 5597 6.917477 GTCAGAATGTATTGTTGTTCTGCAAA 59.083 34.615 8.63 0.00 44.38 3.68
4927 5598 7.434897 GTCAGAATGTATTGTTGTTCTGCAAAA 59.565 33.333 8.63 0.00 44.38 2.44
4928 5599 8.143193 TCAGAATGTATTGTTGTTCTGCAAAAT 58.857 29.630 8.63 0.00 44.38 1.82
4929 5600 8.767085 CAGAATGTATTGTTGTTCTGCAAAATT 58.233 29.630 0.00 0.00 40.51 1.82
4930 5601 9.328845 AGAATGTATTGTTGTTCTGCAAAATTT 57.671 25.926 0.00 0.00 39.03 1.82
4931 5602 9.372541 GAATGTATTGTTGTTCTGCAAAATTTG 57.627 29.630 0.57 0.57 39.03 2.32
4932 5603 8.659925 ATGTATTGTTGTTCTGCAAAATTTGA 57.340 26.923 10.26 0.00 39.03 2.69
4933 5604 8.484641 TGTATTGTTGTTCTGCAAAATTTGAA 57.515 26.923 10.26 0.00 39.03 2.69
4934 5605 8.602328 TGTATTGTTGTTCTGCAAAATTTGAAG 58.398 29.630 10.26 8.76 39.03 3.02
4935 5606 7.614124 ATTGTTGTTCTGCAAAATTTGAAGT 57.386 28.000 13.03 0.00 37.59 3.01
4936 5607 7.432350 TTGTTGTTCTGCAAAATTTGAAGTT 57.568 28.000 13.03 0.00 37.59 2.66
4937 5608 7.432350 TGTTGTTCTGCAAAATTTGAAGTTT 57.568 28.000 13.03 0.00 37.59 2.66
4938 5609 8.539770 TGTTGTTCTGCAAAATTTGAAGTTTA 57.460 26.923 13.03 0.00 37.59 2.01
4939 5610 9.160496 TGTTGTTCTGCAAAATTTGAAGTTTAT 57.840 25.926 13.03 0.00 37.59 1.40
4951 5622 9.959749 AAATTTGAAGTTTATATGTTGTGTCGT 57.040 25.926 0.00 0.00 0.00 4.34
4952 5623 9.959749 AATTTGAAGTTTATATGTTGTGTCGTT 57.040 25.926 0.00 0.00 0.00 3.85
4953 5624 9.959749 ATTTGAAGTTTATATGTTGTGTCGTTT 57.040 25.926 0.00 0.00 0.00 3.60
4954 5625 8.775220 TTGAAGTTTATATGTTGTGTCGTTTG 57.225 30.769 0.00 0.00 0.00 2.93
4955 5626 8.144155 TGAAGTTTATATGTTGTGTCGTTTGA 57.856 30.769 0.00 0.00 0.00 2.69
4956 5627 8.279800 TGAAGTTTATATGTTGTGTCGTTTGAG 58.720 33.333 0.00 0.00 0.00 3.02
4957 5628 7.956420 AGTTTATATGTTGTGTCGTTTGAGA 57.044 32.000 0.00 0.00 0.00 3.27
4958 5629 8.018677 AGTTTATATGTTGTGTCGTTTGAGAG 57.981 34.615 0.00 0.00 0.00 3.20
4959 5630 7.870954 AGTTTATATGTTGTGTCGTTTGAGAGA 59.129 33.333 0.00 0.00 0.00 3.10
4960 5631 7.576750 TTATATGTTGTGTCGTTTGAGAGAC 57.423 36.000 0.00 0.00 37.85 3.36
4961 5632 3.239587 TGTTGTGTCGTTTGAGAGACA 57.760 42.857 0.00 0.00 44.11 3.41
4995 5666 3.474904 CGTTTGCACGGATCGCGA 61.475 61.111 13.09 13.09 43.16 5.87
4996 5667 2.798501 CGTTTGCACGGATCGCGAT 61.799 57.895 23.97 23.97 43.16 4.58
4997 5668 1.296867 GTTTGCACGGATCGCGATG 60.297 57.895 29.09 15.89 0.00 3.84
4998 5669 3.094661 TTTGCACGGATCGCGATGC 62.095 57.895 29.09 28.66 38.59 3.91
4999 5670 4.810661 TGCACGGATCGCGATGCA 62.811 61.111 34.64 30.48 45.45 3.96
5000 5671 3.993234 GCACGGATCGCGATGCAG 61.993 66.667 34.64 28.24 38.00 4.41
5001 5672 2.278792 CACGGATCGCGATGCAGA 60.279 61.111 34.64 3.06 0.00 4.26
5002 5673 1.878069 CACGGATCGCGATGCAGAA 60.878 57.895 34.64 2.24 0.00 3.02
5003 5674 1.153647 ACGGATCGCGATGCAGAAA 60.154 52.632 34.64 1.41 0.00 2.52
5004 5675 0.530650 ACGGATCGCGATGCAGAAAT 60.531 50.000 34.64 15.14 0.00 2.17
5005 5676 0.110956 CGGATCGCGATGCAGAAATG 60.111 55.000 34.64 17.16 0.00 2.32
5006 5677 0.236711 GGATCGCGATGCAGAAATGG 59.763 55.000 32.14 0.00 0.00 3.16
5007 5678 1.220529 GATCGCGATGCAGAAATGGA 58.779 50.000 29.09 0.00 0.00 3.41
5008 5679 1.802960 GATCGCGATGCAGAAATGGAT 59.197 47.619 29.09 0.00 0.00 3.41
5009 5680 0.939419 TCGCGATGCAGAAATGGATG 59.061 50.000 3.71 0.00 0.00 3.51
5010 5681 0.040692 CGCGATGCAGAAATGGATGG 60.041 55.000 0.00 0.00 0.00 3.51
5011 5682 0.318445 GCGATGCAGAAATGGATGGC 60.318 55.000 1.48 1.48 34.81 4.40
5012 5683 1.026584 CGATGCAGAAATGGATGGCA 58.973 50.000 0.00 0.00 39.03 4.92
5013 5684 1.406180 CGATGCAGAAATGGATGGCAA 59.594 47.619 0.00 0.00 38.08 4.52
5014 5685 2.159212 CGATGCAGAAATGGATGGCAAA 60.159 45.455 0.00 0.00 38.08 3.68
5015 5686 3.454375 GATGCAGAAATGGATGGCAAAG 58.546 45.455 0.00 0.00 38.08 2.77
5016 5687 2.527497 TGCAGAAATGGATGGCAAAGA 58.473 42.857 0.00 0.00 0.00 2.52
5017 5688 3.101437 TGCAGAAATGGATGGCAAAGAT 58.899 40.909 0.00 0.00 0.00 2.40
5018 5689 4.279982 TGCAGAAATGGATGGCAAAGATA 58.720 39.130 0.00 0.00 0.00 1.98
5019 5690 4.710865 TGCAGAAATGGATGGCAAAGATAA 59.289 37.500 0.00 0.00 0.00 1.75
5020 5691 5.163488 TGCAGAAATGGATGGCAAAGATAAG 60.163 40.000 0.00 0.00 0.00 1.73
5021 5692 5.738208 GCAGAAATGGATGGCAAAGATAAGG 60.738 44.000 0.00 0.00 0.00 2.69
5022 5693 4.897670 AGAAATGGATGGCAAAGATAAGGG 59.102 41.667 0.00 0.00 0.00 3.95
5023 5694 2.754012 TGGATGGCAAAGATAAGGGG 57.246 50.000 0.00 0.00 0.00 4.79
5024 5695 1.929494 TGGATGGCAAAGATAAGGGGT 59.071 47.619 0.00 0.00 0.00 4.95
5025 5696 3.127250 TGGATGGCAAAGATAAGGGGTA 58.873 45.455 0.00 0.00 0.00 3.69
5026 5697 3.117663 TGGATGGCAAAGATAAGGGGTAC 60.118 47.826 0.00 0.00 0.00 3.34
5038 5709 4.023137 GGGTACCGTGTAGCCTGA 57.977 61.111 19.05 0.00 40.86 3.86
5039 5710 1.814527 GGGTACCGTGTAGCCTGAG 59.185 63.158 19.05 0.00 40.86 3.35
5040 5711 1.141234 GGTACCGTGTAGCCTGAGC 59.859 63.158 0.00 0.00 40.32 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
346 350 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
411 417 5.471456 AGCATCTTTCAAACTCAAGTAGTGG 59.529 40.000 0.00 0.00 38.88 4.00
415 421 7.283127 ACTTTGAGCATCTTTCAAACTCAAGTA 59.717 33.333 0.00 0.00 45.24 2.24
437 443 7.360946 GGTTAATGATAGTTGCACTTCGACTTT 60.361 37.037 0.00 0.00 39.99 2.66
445 451 8.644374 TTTTAAGGGTTAATGATAGTTGCACT 57.356 30.769 0.00 0.00 0.00 4.40
448 740 7.543756 TGCTTTTAAGGGTTAATGATAGTTGC 58.456 34.615 0.00 0.00 0.00 4.17
492 784 1.480954 TCTCCGGTAGAAAGGTGATGC 59.519 52.381 0.00 0.00 0.00 3.91
503 795 3.372206 CACTCTGCATTTTTCTCCGGTAG 59.628 47.826 0.00 0.00 0.00 3.18
516 808 0.337773 TCTCTCCCTCCACTCTGCAT 59.662 55.000 0.00 0.00 0.00 3.96
521 813 1.033202 GTCCGTCTCTCCCTCCACTC 61.033 65.000 0.00 0.00 0.00 3.51
528 820 0.612453 AGAACCTGTCCGTCTCTCCC 60.612 60.000 0.00 0.00 0.00 4.30
545 837 1.746787 CAAACCATGCATGCAGCTAGA 59.253 47.619 26.69 0.16 45.94 2.43
565 857 2.105477 TCTCCAAGATCCCTGCAATAGC 59.895 50.000 0.00 0.00 42.57 2.97
568 860 1.918262 TGTCTCCAAGATCCCTGCAAT 59.082 47.619 0.00 0.00 0.00 3.56
569 861 1.280133 CTGTCTCCAAGATCCCTGCAA 59.720 52.381 0.00 0.00 0.00 4.08
730 1022 1.209261 TGCCGACTGCCAATCTATTCA 59.791 47.619 0.00 0.00 40.16 2.57
731 1023 1.869767 CTGCCGACTGCCAATCTATTC 59.130 52.381 0.00 0.00 40.16 1.75
733 1025 0.833287 ACTGCCGACTGCCAATCTAT 59.167 50.000 0.00 0.00 40.16 1.98
734 1026 0.613260 AACTGCCGACTGCCAATCTA 59.387 50.000 0.00 0.00 40.16 1.98
736 1028 1.796796 GAACTGCCGACTGCCAATC 59.203 57.895 0.00 0.00 40.16 2.67
792 1084 7.023197 ACGATAACTGCAAAAGTACAAAGTT 57.977 32.000 0.00 0.00 38.56 2.66
846 1140 1.950909 AGATCGCGTAAAGAGGAGGAG 59.049 52.381 5.77 0.00 0.00 3.69
847 1141 2.054232 AGATCGCGTAAAGAGGAGGA 57.946 50.000 5.77 0.00 0.00 3.71
848 1142 2.879646 AGTAGATCGCGTAAAGAGGAGG 59.120 50.000 5.77 0.00 0.00 4.30
927 1231 2.223829 GCACGCATATATAGCTCCGGAT 60.224 50.000 3.57 0.00 0.00 4.18
928 1232 1.134367 GCACGCATATATAGCTCCGGA 59.866 52.381 2.93 2.93 0.00 5.14
930 1234 1.135139 AGGCACGCATATATAGCTCCG 59.865 52.381 0.00 0.00 0.00 4.63
932 1236 3.364062 CGTAGGCACGCATATATAGCTC 58.636 50.000 0.00 0.00 42.05 4.09
933 1237 3.422417 CGTAGGCACGCATATATAGCT 57.578 47.619 0.00 0.00 42.05 3.32
1050 1368 2.436824 GCGAGCAAAGGGAGGGAC 60.437 66.667 0.00 0.00 0.00 4.46
1241 1565 2.125147 CCGCGAAGGCCTTGATGA 60.125 61.111 26.25 0.00 35.02 2.92
1344 1668 0.673644 CGAACGGGAACTTCTGCCAT 60.674 55.000 0.00 0.00 34.42 4.40
1392 1716 2.678580 TCGACGATGAGGGTGGCA 60.679 61.111 0.00 0.00 0.00 4.92
1675 2105 6.615617 TGACTAGTGATAGGAGCCTAAATCT 58.384 40.000 0.00 2.51 31.73 2.40
2062 2495 7.939039 TCCATGTCAGAATATTAGGAAATCCAC 59.061 37.037 1.67 0.00 38.89 4.02
2326 2794 3.305964 ACAAACTCACGTCTCATACACG 58.694 45.455 0.00 0.00 43.13 4.49
2427 2949 3.302365 GCAACCTGCAAAGCTTAATCA 57.698 42.857 0.00 0.00 44.26 2.57
2547 3073 8.148999 CCCTCCTAATCTTTACCATGTTACTAC 58.851 40.741 0.00 0.00 0.00 2.73
2844 3373 0.742505 ATCATGGTTTGCAGGCGATG 59.257 50.000 7.80 7.80 0.00 3.84
2845 3374 1.027357 GATCATGGTTTGCAGGCGAT 58.973 50.000 0.00 0.00 0.00 4.58
2846 3375 0.035152 AGATCATGGTTTGCAGGCGA 60.035 50.000 0.00 0.00 0.00 5.54
2847 3376 0.813184 AAGATCATGGTTTGCAGGCG 59.187 50.000 0.00 0.00 0.00 5.52
2848 3377 4.454728 TTTAAGATCATGGTTTGCAGGC 57.545 40.909 0.00 0.00 0.00 4.85
2850 3379 6.254157 CCGATTTTTAAGATCATGGTTTGCAG 59.746 38.462 0.00 0.00 0.00 4.41
2851 3380 6.098679 CCGATTTTTAAGATCATGGTTTGCA 58.901 36.000 0.00 0.00 0.00 4.08
2852 3381 6.099341 ACCGATTTTTAAGATCATGGTTTGC 58.901 36.000 0.00 0.00 0.00 3.68
2853 3382 6.751888 GGACCGATTTTTAAGATCATGGTTTG 59.248 38.462 0.00 0.00 0.00 2.93
2854 3383 6.435904 TGGACCGATTTTTAAGATCATGGTTT 59.564 34.615 0.00 0.00 0.00 3.27
2855 3384 5.949354 TGGACCGATTTTTAAGATCATGGTT 59.051 36.000 0.00 0.00 0.00 3.67
2856 3385 5.505780 TGGACCGATTTTTAAGATCATGGT 58.494 37.500 0.00 0.00 0.00 3.55
2941 3470 4.776308 ACCCTGAACTATCGTACTTTTCCT 59.224 41.667 0.00 0.00 0.00 3.36
3064 3677 7.011857 GCAACTTGAATTCCATTTTGGTGTAAA 59.988 33.333 2.27 0.00 39.03 2.01
3088 3702 6.889177 TCATAATCCAACACAATCCTAAAGCA 59.111 34.615 0.00 0.00 0.00 3.91
3286 3901 4.915704 TGAACTTCTTGCGGTTTGTAAAG 58.084 39.130 0.00 0.00 0.00 1.85
3296 3911 4.672413 GTCAAATCACTTGAACTTCTTGCG 59.328 41.667 0.00 0.00 45.67 4.85
3320 3935 1.336795 GGTGGCTGTTAAACATGTGGC 60.337 52.381 0.00 0.00 0.00 5.01
3483 4101 7.121315 GGATGAGCTATGTAATTTTGGGGATAC 59.879 40.741 0.00 0.00 0.00 2.24
3485 4103 6.012745 GGATGAGCTATGTAATTTTGGGGAT 58.987 40.000 0.00 0.00 0.00 3.85
3487 4105 5.010012 GTGGATGAGCTATGTAATTTTGGGG 59.990 44.000 0.00 0.00 0.00 4.96
3659 4282 9.261035 TCATTTTATGGGCCAAGAAGTTAATTA 57.739 29.630 11.89 0.00 0.00 1.40
3660 4283 8.144862 TCATTTTATGGGCCAAGAAGTTAATT 57.855 30.769 11.89 0.00 0.00 1.40
3661 4284 7.732222 TCATTTTATGGGCCAAGAAGTTAAT 57.268 32.000 11.89 2.38 0.00 1.40
3662 4285 7.364585 CCATCATTTTATGGGCCAAGAAGTTAA 60.365 37.037 11.89 0.00 42.41 2.01
3940 4563 3.523157 TCTGCACCCTAGGATTCATGAAA 59.477 43.478 13.09 0.00 0.00 2.69
4191 4816 9.650371 CCGAACAAATGTACATGTATATTTCAG 57.350 33.333 27.92 22.03 35.58 3.02
4280 4905 0.880278 GTCATGCACCACACTCACGT 60.880 55.000 0.00 0.00 0.00 4.49
4308 4933 9.807921 AATGTTCTTTCTGGGTATAAAGAAGAA 57.192 29.630 9.77 3.84 46.72 2.52
4378 5003 2.159170 TGTTTTTCCTTTTGGGCGAGTG 60.159 45.455 0.00 0.00 40.87 3.51
4391 5016 6.903419 TGGTTTTGTGTTTTGATGTTTTTCC 58.097 32.000 0.00 0.00 0.00 3.13
4397 5022 7.679164 GCATGAAATGGTTTTGTGTTTTGATGT 60.679 33.333 0.00 0.00 46.86 3.06
4458 5125 3.988517 GGTAGAGCTTGACAGTGTAACAC 59.011 47.826 0.00 0.00 41.43 3.32
4465 5136 4.561734 GCTAAAGTGGTAGAGCTTGACAGT 60.562 45.833 0.00 0.00 32.04 3.55
4595 5266 2.784347 GCCTGAGCTACAAAGGAACTT 58.216 47.619 8.11 0.00 44.29 2.66
4596 5267 2.481289 GCCTGAGCTACAAAGGAACT 57.519 50.000 8.11 0.00 36.38 3.01
4608 5279 0.543749 AGGTTCCATGTAGCCTGAGC 59.456 55.000 0.00 0.00 40.32 4.26
4609 5280 2.114616 AGAGGTTCCATGTAGCCTGAG 58.885 52.381 0.00 0.00 0.00 3.35
4610 5281 2.254152 AGAGGTTCCATGTAGCCTGA 57.746 50.000 0.00 0.00 0.00 3.86
4611 5282 4.503991 GGATAAGAGGTTCCATGTAGCCTG 60.504 50.000 0.00 0.00 31.99 4.85
4612 5283 3.648545 GGATAAGAGGTTCCATGTAGCCT 59.351 47.826 0.00 0.00 31.99 4.58
4613 5284 3.648545 AGGATAAGAGGTTCCATGTAGCC 59.351 47.826 0.00 0.00 34.27 3.93
4614 5285 4.345257 TGAGGATAAGAGGTTCCATGTAGC 59.655 45.833 0.00 0.00 34.27 3.58
4615 5286 6.284459 GTTGAGGATAAGAGGTTCCATGTAG 58.716 44.000 0.00 0.00 34.27 2.74
4616 5287 5.130477 GGTTGAGGATAAGAGGTTCCATGTA 59.870 44.000 0.00 0.00 34.27 2.29
4617 5288 4.080299 GGTTGAGGATAAGAGGTTCCATGT 60.080 45.833 0.00 0.00 34.27 3.21
4618 5289 4.455606 GGTTGAGGATAAGAGGTTCCATG 58.544 47.826 0.00 0.00 34.27 3.66
4619 5290 3.459969 GGGTTGAGGATAAGAGGTTCCAT 59.540 47.826 0.00 0.00 34.27 3.41
4620 5291 2.844348 GGGTTGAGGATAAGAGGTTCCA 59.156 50.000 0.00 0.00 34.27 3.53
4621 5292 3.116174 AGGGTTGAGGATAAGAGGTTCC 58.884 50.000 0.00 0.00 0.00 3.62
4622 5293 3.134985 GGAGGGTTGAGGATAAGAGGTTC 59.865 52.174 0.00 0.00 0.00 3.62
4623 5294 3.116174 GGAGGGTTGAGGATAAGAGGTT 58.884 50.000 0.00 0.00 0.00 3.50
4624 5295 2.045885 TGGAGGGTTGAGGATAAGAGGT 59.954 50.000 0.00 0.00 0.00 3.85
4625 5296 2.703007 CTGGAGGGTTGAGGATAAGAGG 59.297 54.545 0.00 0.00 0.00 3.69
4626 5297 2.103941 GCTGGAGGGTTGAGGATAAGAG 59.896 54.545 0.00 0.00 0.00 2.85
4627 5298 2.119495 GCTGGAGGGTTGAGGATAAGA 58.881 52.381 0.00 0.00 0.00 2.10
4628 5299 1.141858 GGCTGGAGGGTTGAGGATAAG 59.858 57.143 0.00 0.00 0.00 1.73
4629 5300 1.213296 GGCTGGAGGGTTGAGGATAA 58.787 55.000 0.00 0.00 0.00 1.75
4630 5301 0.343372 AGGCTGGAGGGTTGAGGATA 59.657 55.000 0.00 0.00 0.00 2.59
4631 5302 0.551131 AAGGCTGGAGGGTTGAGGAT 60.551 55.000 0.00 0.00 0.00 3.24
4632 5303 1.151810 AAGGCTGGAGGGTTGAGGA 60.152 57.895 0.00 0.00 0.00 3.71
4633 5304 1.001641 CAAGGCTGGAGGGTTGAGG 60.002 63.158 0.00 0.00 0.00 3.86
4634 5305 1.676967 GCAAGGCTGGAGGGTTGAG 60.677 63.158 0.00 0.00 0.00 3.02
4635 5306 1.719063 AAGCAAGGCTGGAGGGTTGA 61.719 55.000 0.00 0.00 39.62 3.18
4636 5307 0.829182 AAAGCAAGGCTGGAGGGTTG 60.829 55.000 0.00 0.00 39.62 3.77
4637 5308 0.829182 CAAAGCAAGGCTGGAGGGTT 60.829 55.000 0.00 0.00 39.62 4.11
4638 5309 1.228675 CAAAGCAAGGCTGGAGGGT 60.229 57.895 0.00 0.00 39.62 4.34
4639 5310 0.964358 CTCAAAGCAAGGCTGGAGGG 60.964 60.000 0.00 0.00 39.62 4.30
4640 5311 0.037303 TCTCAAAGCAAGGCTGGAGG 59.963 55.000 15.67 3.44 39.62 4.30
4641 5312 2.015587 GATCTCAAAGCAAGGCTGGAG 58.984 52.381 11.70 11.70 39.62 3.86
4642 5313 1.340405 GGATCTCAAAGCAAGGCTGGA 60.340 52.381 0.00 0.00 39.62 3.86
4643 5314 1.101331 GGATCTCAAAGCAAGGCTGG 58.899 55.000 0.00 0.00 39.62 4.85
4644 5315 0.731417 CGGATCTCAAAGCAAGGCTG 59.269 55.000 0.00 0.00 39.62 4.85
4645 5316 0.326264 ACGGATCTCAAAGCAAGGCT 59.674 50.000 0.00 0.00 42.56 4.58
4646 5317 1.666189 GTACGGATCTCAAAGCAAGGC 59.334 52.381 0.00 0.00 0.00 4.35
4647 5318 3.118956 AGAGTACGGATCTCAAAGCAAGG 60.119 47.826 0.00 0.00 34.73 3.61
4648 5319 4.109050 GAGAGTACGGATCTCAAAGCAAG 58.891 47.826 5.89 0.00 42.32 4.01
4649 5320 3.119101 GGAGAGTACGGATCTCAAAGCAA 60.119 47.826 11.48 0.00 44.16 3.91
4650 5321 2.427453 GGAGAGTACGGATCTCAAAGCA 59.573 50.000 11.48 0.00 44.16 3.91
4651 5322 2.427453 TGGAGAGTACGGATCTCAAAGC 59.573 50.000 11.48 0.00 44.16 3.51
4652 5323 4.158764 AGTTGGAGAGTACGGATCTCAAAG 59.841 45.833 11.48 0.00 44.16 2.77
4653 5324 4.087182 AGTTGGAGAGTACGGATCTCAAA 58.913 43.478 11.48 5.01 44.16 2.69
4654 5325 3.698289 AGTTGGAGAGTACGGATCTCAA 58.302 45.455 11.48 0.00 44.16 3.02
4655 5326 3.367646 AGTTGGAGAGTACGGATCTCA 57.632 47.619 11.48 0.00 44.16 3.27
4656 5327 4.883006 AGTTAGTTGGAGAGTACGGATCTC 59.117 45.833 2.70 2.70 42.08 2.75
4657 5328 4.857679 AGTTAGTTGGAGAGTACGGATCT 58.142 43.478 0.00 0.00 0.00 2.75
4658 5329 5.579564 AAGTTAGTTGGAGAGTACGGATC 57.420 43.478 0.00 0.00 0.00 3.36
4659 5330 5.948162 TGTAAGTTAGTTGGAGAGTACGGAT 59.052 40.000 0.00 0.00 0.00 4.18
4660 5331 5.316167 TGTAAGTTAGTTGGAGAGTACGGA 58.684 41.667 0.00 0.00 0.00 4.69
4661 5332 5.633830 TGTAAGTTAGTTGGAGAGTACGG 57.366 43.478 0.00 0.00 0.00 4.02
4662 5333 6.675987 AGTTGTAAGTTAGTTGGAGAGTACG 58.324 40.000 0.00 0.00 0.00 3.67
4663 5334 9.007901 TCTAGTTGTAAGTTAGTTGGAGAGTAC 57.992 37.037 0.00 0.00 0.00 2.73
4664 5335 9.578576 TTCTAGTTGTAAGTTAGTTGGAGAGTA 57.421 33.333 0.00 0.00 0.00 2.59
4665 5336 8.474710 TTCTAGTTGTAAGTTAGTTGGAGAGT 57.525 34.615 0.00 0.00 0.00 3.24
4666 5337 8.794553 TCTTCTAGTTGTAAGTTAGTTGGAGAG 58.205 37.037 0.00 0.00 0.00 3.20
4667 5338 8.701908 TCTTCTAGTTGTAAGTTAGTTGGAGA 57.298 34.615 0.00 0.00 0.00 3.71
4668 5339 9.930693 AATCTTCTAGTTGTAAGTTAGTTGGAG 57.069 33.333 0.00 0.00 0.00 3.86
4717 5388 9.868277 AAAGTTTGAAGTTCATATGTTGTTTCA 57.132 25.926 6.36 6.60 0.00 2.69
4719 5390 8.603181 GCAAAGTTTGAAGTTCATATGTTGTTT 58.397 29.630 19.82 0.00 0.00 2.83
4720 5391 7.763528 TGCAAAGTTTGAAGTTCATATGTTGTT 59.236 29.630 19.82 0.00 0.00 2.83
4721 5392 7.264221 TGCAAAGTTTGAAGTTCATATGTTGT 58.736 30.769 19.82 0.00 0.00 3.32
4722 5393 7.648908 TCTGCAAAGTTTGAAGTTCATATGTTG 59.351 33.333 20.86 10.86 37.59 3.33
4723 5394 7.715657 TCTGCAAAGTTTGAAGTTCATATGTT 58.284 30.769 20.86 0.00 37.59 2.71
4724 5395 7.275888 TCTGCAAAGTTTGAAGTTCATATGT 57.724 32.000 20.86 0.00 37.59 2.29
4725 5396 7.217636 CGATCTGCAAAGTTTGAAGTTCATATG 59.782 37.037 24.83 11.62 37.59 1.78
4726 5397 7.119699 TCGATCTGCAAAGTTTGAAGTTCATAT 59.880 33.333 24.83 12.71 37.59 1.78
4727 5398 6.426633 TCGATCTGCAAAGTTTGAAGTTCATA 59.573 34.615 24.83 14.70 37.59 2.15
4728 5399 5.239306 TCGATCTGCAAAGTTTGAAGTTCAT 59.761 36.000 24.83 13.29 37.59 2.57
4729 5400 4.574421 TCGATCTGCAAAGTTTGAAGTTCA 59.426 37.500 24.83 14.47 37.59 3.18
4730 5401 5.095691 TCGATCTGCAAAGTTTGAAGTTC 57.904 39.130 20.86 19.87 37.59 3.01
4731 5402 5.163663 TGTTCGATCTGCAAAGTTTGAAGTT 60.164 36.000 20.86 14.10 37.59 2.66
4732 5403 4.335315 TGTTCGATCTGCAAAGTTTGAAGT 59.665 37.500 20.86 10.18 37.59 3.01
4733 5404 4.847633 TGTTCGATCTGCAAAGTTTGAAG 58.152 39.130 19.82 18.11 37.69 3.02
4734 5405 4.891627 TGTTCGATCTGCAAAGTTTGAA 57.108 36.364 19.82 8.06 0.00 2.69
4735 5406 4.891627 TTGTTCGATCTGCAAAGTTTGA 57.108 36.364 19.82 3.95 0.00 2.69
4736 5407 4.797868 TGTTTGTTCGATCTGCAAAGTTTG 59.202 37.500 11.41 11.41 33.50 2.93
4737 5408 4.992688 TGTTTGTTCGATCTGCAAAGTTT 58.007 34.783 6.49 0.00 33.50 2.66
4738 5409 4.630894 TGTTTGTTCGATCTGCAAAGTT 57.369 36.364 6.49 0.00 33.50 2.66
4739 5410 4.836125 ATGTTTGTTCGATCTGCAAAGT 57.164 36.364 6.49 0.00 33.50 2.66
4740 5411 6.602179 TCTAATGTTTGTTCGATCTGCAAAG 58.398 36.000 6.49 0.00 33.50 2.77
4741 5412 6.552859 TCTAATGTTTGTTCGATCTGCAAA 57.447 33.333 0.00 0.00 0.00 3.68
4742 5413 6.017523 TGTTCTAATGTTTGTTCGATCTGCAA 60.018 34.615 0.00 0.00 0.00 4.08
4743 5414 5.468409 TGTTCTAATGTTTGTTCGATCTGCA 59.532 36.000 0.00 0.00 0.00 4.41
4744 5415 5.927030 TGTTCTAATGTTTGTTCGATCTGC 58.073 37.500 0.00 0.00 0.00 4.26
4749 5420 9.605955 CACATTTATGTTCTAATGTTTGTTCGA 57.394 29.630 0.00 0.00 41.65 3.71
4750 5421 9.393249 ACACATTTATGTTCTAATGTTTGTTCG 57.607 29.630 0.00 0.00 41.65 3.95
4886 5557 9.739276 ATACATTCTGACTACAATCTGGAAAAA 57.261 29.630 0.00 0.00 0.00 1.94
4887 5558 9.739276 AATACATTCTGACTACAATCTGGAAAA 57.261 29.630 0.00 0.00 0.00 2.29
4888 5559 9.166173 CAATACATTCTGACTACAATCTGGAAA 57.834 33.333 0.00 0.00 0.00 3.13
4889 5560 8.321353 ACAATACATTCTGACTACAATCTGGAA 58.679 33.333 0.00 0.00 0.00 3.53
4890 5561 7.851228 ACAATACATTCTGACTACAATCTGGA 58.149 34.615 0.00 0.00 0.00 3.86
4891 5562 8.393366 CAACAATACATTCTGACTACAATCTGG 58.607 37.037 0.00 0.00 0.00 3.86
4892 5563 8.939929 ACAACAATACATTCTGACTACAATCTG 58.060 33.333 0.00 0.00 0.00 2.90
4893 5564 9.507329 AACAACAATACATTCTGACTACAATCT 57.493 29.630 0.00 0.00 0.00 2.40
4894 5565 9.760660 GAACAACAATACATTCTGACTACAATC 57.239 33.333 0.00 0.00 0.00 2.67
4895 5566 9.507329 AGAACAACAATACATTCTGACTACAAT 57.493 29.630 0.00 0.00 30.26 2.71
4896 5567 8.902540 AGAACAACAATACATTCTGACTACAA 57.097 30.769 0.00 0.00 30.26 2.41
4904 5575 8.891671 AATTTTGCAGAACAACAATACATTCT 57.108 26.923 0.00 0.00 38.23 2.40
4905 5576 9.372541 CAAATTTTGCAGAACAACAATACATTC 57.627 29.630 0.00 0.00 38.23 2.67
4906 5577 9.107177 TCAAATTTTGCAGAACAACAATACATT 57.893 25.926 4.19 0.00 38.23 2.71
4907 5578 8.659925 TCAAATTTTGCAGAACAACAATACAT 57.340 26.923 4.19 0.00 38.23 2.29
4908 5579 8.484641 TTCAAATTTTGCAGAACAACAATACA 57.515 26.923 4.19 0.00 38.23 2.29
4909 5580 8.603181 ACTTCAAATTTTGCAGAACAACAATAC 58.397 29.630 14.44 0.00 38.23 1.89
4910 5581 8.715191 ACTTCAAATTTTGCAGAACAACAATA 57.285 26.923 14.44 0.00 38.23 1.90
4911 5582 7.614124 ACTTCAAATTTTGCAGAACAACAAT 57.386 28.000 14.44 0.00 38.23 2.71
4912 5583 7.432350 AACTTCAAATTTTGCAGAACAACAA 57.568 28.000 14.44 0.00 38.23 2.83
4913 5584 7.432350 AAACTTCAAATTTTGCAGAACAACA 57.568 28.000 14.44 0.00 38.23 3.33
4925 5596 9.959749 ACGACACAACATATAAACTTCAAATTT 57.040 25.926 0.00 0.00 0.00 1.82
4926 5597 9.959749 AACGACACAACATATAAACTTCAAATT 57.040 25.926 0.00 0.00 0.00 1.82
4927 5598 9.959749 AAACGACACAACATATAAACTTCAAAT 57.040 25.926 0.00 0.00 0.00 2.32
4928 5599 9.227490 CAAACGACACAACATATAAACTTCAAA 57.773 29.630 0.00 0.00 0.00 2.69
4929 5600 8.613482 TCAAACGACACAACATATAAACTTCAA 58.387 29.630 0.00 0.00 0.00 2.69
4930 5601 8.144155 TCAAACGACACAACATATAAACTTCA 57.856 30.769 0.00 0.00 0.00 3.02
4931 5602 8.492748 TCTCAAACGACACAACATATAAACTTC 58.507 33.333 0.00 0.00 0.00 3.01
4932 5603 8.373048 TCTCAAACGACACAACATATAAACTT 57.627 30.769 0.00 0.00 0.00 2.66
4933 5604 7.870954 TCTCTCAAACGACACAACATATAAACT 59.129 33.333 0.00 0.00 0.00 2.66
4934 5605 7.950496 GTCTCTCAAACGACACAACATATAAAC 59.050 37.037 0.00 0.00 0.00 2.01
4935 5606 7.654116 TGTCTCTCAAACGACACAACATATAAA 59.346 33.333 0.00 0.00 35.40 1.40
4936 5607 7.149307 TGTCTCTCAAACGACACAACATATAA 58.851 34.615 0.00 0.00 35.40 0.98
4937 5608 6.683715 TGTCTCTCAAACGACACAACATATA 58.316 36.000 0.00 0.00 35.40 0.86
4938 5609 5.538118 TGTCTCTCAAACGACACAACATAT 58.462 37.500 0.00 0.00 35.40 1.78
4939 5610 4.939271 TGTCTCTCAAACGACACAACATA 58.061 39.130 0.00 0.00 35.40 2.29
4940 5611 3.792401 TGTCTCTCAAACGACACAACAT 58.208 40.909 0.00 0.00 35.40 2.71
4941 5612 3.239587 TGTCTCTCAAACGACACAACA 57.760 42.857 0.00 0.00 35.40 3.33
4965 5636 3.241932 CGTGCAAACGCATTTGTCTTTTT 60.242 39.130 7.14 0.00 45.97 1.94
4966 5637 2.281234 CGTGCAAACGCATTTGTCTTTT 59.719 40.909 7.14 0.00 45.97 2.27
4967 5638 1.851666 CGTGCAAACGCATTTGTCTTT 59.148 42.857 7.14 0.00 45.97 2.52
4968 5639 1.476074 CGTGCAAACGCATTTGTCTT 58.524 45.000 7.14 0.00 45.97 3.01
4969 5640 0.317770 CCGTGCAAACGCATTTGTCT 60.318 50.000 7.14 0.00 45.97 3.41
4970 5641 0.317436 TCCGTGCAAACGCATTTGTC 60.317 50.000 7.14 0.26 45.97 3.18
4971 5642 0.313672 ATCCGTGCAAACGCATTTGT 59.686 45.000 7.14 0.00 45.97 2.83
4972 5643 0.984109 GATCCGTGCAAACGCATTTG 59.016 50.000 0.00 0.00 46.81 2.32
4973 5644 0.454285 CGATCCGTGCAAACGCATTT 60.454 50.000 0.00 0.00 42.51 2.32
4974 5645 1.134487 CGATCCGTGCAAACGCATT 59.866 52.632 0.00 0.00 42.51 3.56
4975 5646 2.784596 CGATCCGTGCAAACGCAT 59.215 55.556 0.00 0.00 42.51 4.73
4976 5647 4.083600 GCGATCCGTGCAAACGCA 62.084 61.111 15.38 0.00 46.75 5.24
4978 5649 2.798501 ATCGCGATCCGTGCAAACG 61.799 57.895 17.62 0.00 37.28 3.60
4979 5650 1.296867 CATCGCGATCCGTGCAAAC 60.297 57.895 20.85 0.00 37.28 2.93
4980 5651 3.088914 CATCGCGATCCGTGCAAA 58.911 55.556 20.85 0.00 37.28 3.68
4981 5652 3.563088 GCATCGCGATCCGTGCAA 61.563 61.111 23.50 0.00 40.87 4.08
4982 5653 4.810661 TGCATCGCGATCCGTGCA 62.811 61.111 26.30 26.30 45.02 4.57
4983 5654 3.993234 CTGCATCGCGATCCGTGC 61.993 66.667 20.85 21.59 41.25 5.34
4984 5655 1.420641 TTTCTGCATCGCGATCCGTG 61.421 55.000 20.85 11.19 38.82 4.94
4985 5656 0.530650 ATTTCTGCATCGCGATCCGT 60.531 50.000 20.85 0.00 38.35 4.69
4986 5657 0.110956 CATTTCTGCATCGCGATCCG 60.111 55.000 20.85 10.59 38.61 4.18
4987 5658 0.236711 CCATTTCTGCATCGCGATCC 59.763 55.000 20.85 11.77 0.00 3.36
4988 5659 1.220529 TCCATTTCTGCATCGCGATC 58.779 50.000 20.85 14.50 0.00 3.69
4989 5660 1.534163 CATCCATTTCTGCATCGCGAT 59.466 47.619 17.62 17.62 0.00 4.58
4990 5661 0.939419 CATCCATTTCTGCATCGCGA 59.061 50.000 13.09 13.09 0.00 5.87
4991 5662 0.040692 CCATCCATTTCTGCATCGCG 60.041 55.000 0.00 0.00 0.00 5.87
4992 5663 0.318445 GCCATCCATTTCTGCATCGC 60.318 55.000 0.00 0.00 0.00 4.58
4993 5664 1.026584 TGCCATCCATTTCTGCATCG 58.973 50.000 0.00 0.00 0.00 3.84
4994 5665 3.131577 TCTTTGCCATCCATTTCTGCATC 59.868 43.478 0.00 0.00 0.00 3.91
4995 5666 3.101437 TCTTTGCCATCCATTTCTGCAT 58.899 40.909 0.00 0.00 0.00 3.96
4996 5667 2.527497 TCTTTGCCATCCATTTCTGCA 58.473 42.857 0.00 0.00 0.00 4.41
4997 5668 3.814005 ATCTTTGCCATCCATTTCTGC 57.186 42.857 0.00 0.00 0.00 4.26
4998 5669 5.221382 CCCTTATCTTTGCCATCCATTTCTG 60.221 44.000 0.00 0.00 0.00 3.02
4999 5670 4.897670 CCCTTATCTTTGCCATCCATTTCT 59.102 41.667 0.00 0.00 0.00 2.52
5000 5671 4.039609 CCCCTTATCTTTGCCATCCATTTC 59.960 45.833 0.00 0.00 0.00 2.17
5001 5672 3.969312 CCCCTTATCTTTGCCATCCATTT 59.031 43.478 0.00 0.00 0.00 2.32
5002 5673 3.051880 ACCCCTTATCTTTGCCATCCATT 60.052 43.478 0.00 0.00 0.00 3.16
5003 5674 2.519691 ACCCCTTATCTTTGCCATCCAT 59.480 45.455 0.00 0.00 0.00 3.41
5004 5675 1.929494 ACCCCTTATCTTTGCCATCCA 59.071 47.619 0.00 0.00 0.00 3.41
5005 5676 2.755952 ACCCCTTATCTTTGCCATCC 57.244 50.000 0.00 0.00 0.00 3.51
5006 5677 3.487372 GGTACCCCTTATCTTTGCCATC 58.513 50.000 0.00 0.00 0.00 3.51
5007 5678 2.158667 CGGTACCCCTTATCTTTGCCAT 60.159 50.000 6.25 0.00 0.00 4.40
5008 5679 1.210967 CGGTACCCCTTATCTTTGCCA 59.789 52.381 6.25 0.00 0.00 4.92
5009 5680 1.211212 ACGGTACCCCTTATCTTTGCC 59.789 52.381 6.25 0.00 0.00 4.52
5010 5681 2.285977 CACGGTACCCCTTATCTTTGC 58.714 52.381 6.25 0.00 0.00 3.68
5011 5682 3.622166 ACACGGTACCCCTTATCTTTG 57.378 47.619 6.25 0.00 0.00 2.77
5012 5683 3.133542 GCTACACGGTACCCCTTATCTTT 59.866 47.826 6.25 0.00 0.00 2.52
5013 5684 2.697229 GCTACACGGTACCCCTTATCTT 59.303 50.000 6.25 0.00 0.00 2.40
5014 5685 2.314246 GCTACACGGTACCCCTTATCT 58.686 52.381 6.25 0.00 0.00 1.98
5015 5686 1.342496 GGCTACACGGTACCCCTTATC 59.658 57.143 6.25 0.00 0.00 1.75
5016 5687 1.062658 AGGCTACACGGTACCCCTTAT 60.063 52.381 6.25 0.00 0.00 1.73
5017 5688 0.336048 AGGCTACACGGTACCCCTTA 59.664 55.000 6.25 0.00 0.00 2.69
5018 5689 1.079804 AGGCTACACGGTACCCCTT 59.920 57.895 6.25 0.00 0.00 3.95
5019 5690 1.684734 CAGGCTACACGGTACCCCT 60.685 63.158 6.25 2.50 0.00 4.79
5020 5691 1.673808 CTCAGGCTACACGGTACCCC 61.674 65.000 6.25 0.00 0.00 4.95
5021 5692 1.814527 CTCAGGCTACACGGTACCC 59.185 63.158 6.25 0.00 0.00 3.69
5022 5693 1.141234 GCTCAGGCTACACGGTACC 59.859 63.158 0.16 0.16 35.22 3.34
5023 5694 4.808649 GCTCAGGCTACACGGTAC 57.191 61.111 0.00 0.00 35.22 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.