Multiple sequence alignment - TraesCS4D01G277000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G277000 chr4D 100.000 3089 0 0 1 3089 449057381 449054293 0.000000e+00 5705.0
1 TraesCS4D01G277000 chr4B 92.085 2792 108 40 3 2755 561387898 561385181 0.000000e+00 3827.0
2 TraesCS4D01G277000 chr4B 92.308 247 12 3 2845 3089 561385153 561384912 8.200000e-91 344.0
3 TraesCS4D01G277000 chr4A 88.313 3012 162 72 143 3088 17674368 17677255 0.000000e+00 3437.0
4 TraesCS4D01G277000 chr4A 93.814 97 6 0 21 117 17674276 17674372 2.480000e-31 147.0
5 TraesCS4D01G277000 chr5A 74.153 236 57 4 1761 1995 620858154 620858386 9.120000e-16 95.3
6 TraesCS4D01G277000 chr5D 74.324 222 55 2 1775 1995 496847363 496847583 3.280000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G277000 chr4D 449054293 449057381 3088 True 5705.0 5705 100.0000 1 3089 1 chr4D.!!$R1 3088
1 TraesCS4D01G277000 chr4B 561384912 561387898 2986 True 2085.5 3827 92.1965 3 3089 2 chr4B.!!$R1 3086
2 TraesCS4D01G277000 chr4A 17674276 17677255 2979 False 1792.0 3437 91.0635 21 3088 2 chr4A.!!$F1 3067

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
839 873 0.106769 TCCTTCACAGCACAGCCAAA 60.107 50.0 0.0 0.0 0.0 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2433 2504 0.109132 CCCAATTTTGTGCTCTCCGC 60.109 55.0 0.0 0.0 39.77 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 46 0.750911 GAATCAGGAGGCTGGCTTGG 60.751 60.000 4.82 0.00 0.00 3.61
41 47 2.850828 AATCAGGAGGCTGGCTTGGC 62.851 60.000 4.82 0.00 0.00 4.52
43 49 3.263259 AGGAGGCTGGCTTGGCTT 61.263 61.111 4.82 0.00 43.09 4.35
44 50 3.066814 GGAGGCTGGCTTGGCTTG 61.067 66.667 4.82 0.00 43.09 4.01
45 51 2.282745 GAGGCTGGCTTGGCTTGT 60.283 61.111 4.82 0.00 43.09 3.16
46 52 2.599578 AGGCTGGCTTGGCTTGTG 60.600 61.111 0.00 0.00 40.00 3.33
47 53 2.914097 GGCTGGCTTGGCTTGTGT 60.914 61.111 0.00 0.00 0.00 3.72
48 54 2.337532 GCTGGCTTGGCTTGTGTG 59.662 61.111 0.00 0.00 0.00 3.82
49 55 2.337532 CTGGCTTGGCTTGTGTGC 59.662 61.111 0.00 0.00 0.00 4.57
50 56 3.547249 CTGGCTTGGCTTGTGTGCG 62.547 63.158 0.00 0.00 0.00 5.34
52 58 4.268939 GCTTGGCTTGTGTGCGCA 62.269 61.111 5.66 5.66 0.00 6.09
91 97 1.377202 ACGATCCGTGGCAAGCAAT 60.377 52.632 0.00 0.00 39.18 3.56
92 98 0.107897 ACGATCCGTGGCAAGCAATA 60.108 50.000 0.00 0.00 39.18 1.90
93 99 0.304705 CGATCCGTGGCAAGCAATAC 59.695 55.000 0.00 0.00 0.00 1.89
159 165 1.305930 GGCCCCATCAGTTTCGTGTC 61.306 60.000 0.00 0.00 0.00 3.67
171 177 2.490903 GTTTCGTGTCCAGTCTAGCCTA 59.509 50.000 0.00 0.00 0.00 3.93
242 248 1.007387 CTCAAGTTTTGCACCGCCC 60.007 57.895 0.00 0.00 0.00 6.13
254 260 4.308458 CCGCCCCTTGTGTCGTGA 62.308 66.667 0.00 0.00 0.00 4.35
255 261 2.047274 CGCCCCTTGTGTCGTGAT 60.047 61.111 0.00 0.00 0.00 3.06
256 262 1.216977 CGCCCCTTGTGTCGTGATA 59.783 57.895 0.00 0.00 0.00 2.15
364 387 5.392380 CCTTCCCGAAATGAACTGAATTCTG 60.392 44.000 10.51 10.51 38.25 3.02
465 488 2.857483 TGCCTCGGAATTCAGTTTCAA 58.143 42.857 7.93 0.00 0.00 2.69
469 492 4.072131 CCTCGGAATTCAGTTTCAAAGGA 58.928 43.478 7.93 0.00 33.73 3.36
624 647 0.396417 CCCCATTTGCACCCCGAATA 60.396 55.000 0.00 0.00 0.00 1.75
630 653 1.780107 TTGCACCCCGAATACACCCA 61.780 55.000 0.00 0.00 0.00 4.51
671 694 2.271800 GGTAGGCGAGACATTTCACAG 58.728 52.381 0.00 0.00 0.00 3.66
672 695 2.353803 GGTAGGCGAGACATTTCACAGT 60.354 50.000 0.00 0.00 0.00 3.55
673 696 2.550830 AGGCGAGACATTTCACAGTT 57.449 45.000 0.00 0.00 0.00 3.16
800 834 1.075600 CCTCTCCCACTCCCCTCTC 60.076 68.421 0.00 0.00 0.00 3.20
814 848 0.452585 CCTCTCCGTCTTCTTCCGTC 59.547 60.000 0.00 0.00 0.00 4.79
839 873 0.106769 TCCTTCACAGCACAGCCAAA 60.107 50.000 0.00 0.00 0.00 3.28
843 881 1.180907 TCACAGCACAGCCAAACAAA 58.819 45.000 0.00 0.00 0.00 2.83
873 915 4.139038 TCGTAAAACAAAGGGGAGGAAAG 58.861 43.478 0.00 0.00 0.00 2.62
874 916 3.254903 CGTAAAACAAAGGGGAGGAAAGG 59.745 47.826 0.00 0.00 0.00 3.11
875 917 3.699025 AAAACAAAGGGGAGGAAAGGA 57.301 42.857 0.00 0.00 0.00 3.36
876 918 3.699025 AAACAAAGGGGAGGAAAGGAA 57.301 42.857 0.00 0.00 0.00 3.36
877 919 3.699025 AACAAAGGGGAGGAAAGGAAA 57.301 42.857 0.00 0.00 0.00 3.13
878 920 3.699025 ACAAAGGGGAGGAAAGGAAAA 57.301 42.857 0.00 0.00 0.00 2.29
879 921 4.213531 ACAAAGGGGAGGAAAGGAAAAT 57.786 40.909 0.00 0.00 0.00 1.82
976 1021 2.361483 TAGCCGCACCGACCAGTA 60.361 61.111 0.00 0.00 0.00 2.74
981 1026 3.688159 GCACCGACCAGTACCCGT 61.688 66.667 0.00 0.00 0.00 5.28
1396 1445 0.109781 TGCCGAGCGCTGAATTTTTC 60.110 50.000 18.48 0.00 38.78 2.29
1399 1448 2.922335 GCCGAGCGCTGAATTTTTCTTT 60.922 45.455 18.48 0.00 0.00 2.52
2073 2135 3.541713 GGCGAGGGAGGCGAAGAT 61.542 66.667 0.00 0.00 0.00 2.40
2084 2146 2.859992 GCGAAGATGGAGCCAAAGT 58.140 52.632 0.00 0.00 0.00 2.66
2370 2441 2.407361 CAGCAGCAAAGCAAATTTCTCG 59.593 45.455 0.00 0.00 36.85 4.04
2408 2479 2.283298 CCAGTGGAGAAATGTGATCGG 58.717 52.381 1.68 0.00 0.00 4.18
2409 2480 2.283298 CAGTGGAGAAATGTGATCGGG 58.717 52.381 0.00 0.00 0.00 5.14
2410 2481 2.093500 CAGTGGAGAAATGTGATCGGGA 60.093 50.000 0.00 0.00 0.00 5.14
2411 2482 2.571653 AGTGGAGAAATGTGATCGGGAA 59.428 45.455 0.00 0.00 0.00 3.97
2416 2487 3.610911 AGAAATGTGATCGGGAAGGAAC 58.389 45.455 0.00 0.00 0.00 3.62
2429 2500 3.551259 AGGAACTTGTATGTGGCGG 57.449 52.632 0.00 0.00 27.25 6.13
2430 2501 0.676782 AGGAACTTGTATGTGGCGGC 60.677 55.000 0.00 0.00 27.25 6.53
2431 2502 1.654023 GGAACTTGTATGTGGCGGCC 61.654 60.000 13.32 13.32 0.00 6.13
2432 2503 0.958382 GAACTTGTATGTGGCGGCCA 60.958 55.000 19.77 19.77 0.00 5.36
2433 2504 0.960364 AACTTGTATGTGGCGGCCAG 60.960 55.000 24.58 11.43 32.34 4.85
2698 2773 0.745845 CTGAAATCCTGGGCACGGAG 60.746 60.000 0.00 0.00 33.29 4.63
2700 2775 0.539986 GAAATCCTGGGCACGGAGTA 59.460 55.000 0.00 0.00 41.61 2.59
2701 2776 0.541863 AAATCCTGGGCACGGAGTAG 59.458 55.000 0.00 0.00 41.61 2.57
2702 2777 0.617820 AATCCTGGGCACGGAGTAGT 60.618 55.000 0.00 0.00 41.61 2.73
2703 2778 0.260816 ATCCTGGGCACGGAGTAGTA 59.739 55.000 0.00 0.00 41.61 1.82
2704 2779 0.395311 TCCTGGGCACGGAGTAGTAG 60.395 60.000 0.00 0.00 41.61 2.57
2705 2780 1.437986 CTGGGCACGGAGTAGTAGC 59.562 63.158 0.00 0.00 41.61 3.58
2706 2781 1.000019 TGGGCACGGAGTAGTAGCT 60.000 57.895 0.00 0.00 41.61 3.32
2707 2782 1.320344 TGGGCACGGAGTAGTAGCTG 61.320 60.000 0.00 0.00 41.61 4.24
2708 2783 1.321074 GGGCACGGAGTAGTAGCTGT 61.321 60.000 0.00 0.00 41.61 4.40
2709 2784 0.100861 GGCACGGAGTAGTAGCTGTC 59.899 60.000 0.00 0.00 41.61 3.51
2739 2818 8.581253 TGAGACAGTGATATTCTCTTCAGTAA 57.419 34.615 0.00 0.00 37.31 2.24
2789 2874 2.626780 GGACTGGAAGCGGCCAAAC 61.627 63.158 2.24 0.00 37.52 2.93
2802 2887 2.769539 CCAAACTGCACGCACCACA 61.770 57.895 0.00 0.00 0.00 4.17
2837 2922 3.675348 ATCTTGGGATGAAGCCATGAA 57.325 42.857 0.00 0.00 32.09 2.57
2838 2923 3.008835 TCTTGGGATGAAGCCATGAAG 57.991 47.619 0.00 0.00 32.09 3.02
2839 2924 1.407979 CTTGGGATGAAGCCATGAAGC 59.592 52.381 0.00 0.00 32.09 3.86
2841 2926 1.030457 GGGATGAAGCCATGAAGCTG 58.970 55.000 0.00 0.00 44.11 4.24
2842 2927 1.030457 GGATGAAGCCATGAAGCTGG 58.970 55.000 0.00 0.00 44.11 4.85
2843 2928 1.684248 GGATGAAGCCATGAAGCTGGT 60.684 52.381 0.00 0.00 44.11 4.00
2862 2947 6.207614 AGCTGGTTCAAGGATTAAAAGAAGTC 59.792 38.462 0.00 0.00 0.00 3.01
2885 2970 8.842280 AGTCTCTCGAATAGTTTAAGATAGTGG 58.158 37.037 0.00 0.00 0.00 4.00
2886 2971 8.623030 GTCTCTCGAATAGTTTAAGATAGTGGT 58.377 37.037 0.00 0.00 0.00 4.16
2962 3057 1.414158 AGTGGATAGGACCGTCCATG 58.586 55.000 19.95 0.00 45.57 3.66
2974 3069 4.940571 TCCATGGGGATGAGTGGT 57.059 55.556 13.02 0.00 38.64 4.16
3008 3106 2.877582 ATCGGTGTACGCGTTCGC 60.878 61.111 20.78 20.02 43.86 4.70
3041 3140 6.216569 TGTTTAATTCAGCGCCATAAACAAA 58.783 32.000 21.18 7.54 41.11 2.83
3074 3173 6.110411 TCCGAATCTTGGGGATAAGATAAC 57.890 41.667 0.00 0.00 44.43 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.255397 TCCTAAGGATGATGGTTGTGTTT 57.745 39.130 0.00 0.00 0.00 2.83
1 2 4.927267 TCCTAAGGATGATGGTTGTGTT 57.073 40.909 0.00 0.00 0.00 3.32
18 19 0.030705 AGCCAGCCTCCTGATTCCTA 60.031 55.000 0.00 0.00 41.77 2.94
51 57 4.409588 CGAAACGAGCACCGCGTG 62.410 66.667 4.92 4.73 39.18 5.34
91 97 3.571216 TGCCCCCAAGCAACCGTA 61.571 61.111 0.00 0.00 40.56 4.02
142 148 0.036164 TGGACACGAAACTGATGGGG 59.964 55.000 0.00 0.00 0.00 4.96
143 149 1.270839 ACTGGACACGAAACTGATGGG 60.271 52.381 0.00 0.00 0.00 4.00
159 165 3.449349 CCGGCTAGGCTAGACTGG 58.551 66.667 25.37 23.03 0.00 4.00
187 193 4.203076 CCATCGGTCGGTCGGTCC 62.203 72.222 0.00 0.00 0.00 4.46
242 248 2.095415 TCGTCAGTATCACGACACAAGG 60.095 50.000 0.00 0.00 41.27 3.61
254 260 4.203076 GCCCGGCGTCGTCAGTAT 62.203 66.667 9.28 0.00 33.95 2.12
275 293 0.028110 GCGGTTCCATCAATTCGCTC 59.972 55.000 0.00 0.00 36.89 5.03
381 404 9.507329 GAAGGGAATAATGCATCATTTACTAGA 57.493 33.333 0.00 0.00 35.54 2.43
383 406 8.448008 AGGAAGGGAATAATGCATCATTTACTA 58.552 33.333 0.00 0.00 35.54 1.82
465 488 0.684805 TTGCCACCGTGGTTTTCCTT 60.685 50.000 18.95 0.00 40.46 3.36
469 492 2.284190 CATTTTTGCCACCGTGGTTTT 58.716 42.857 18.95 0.00 40.46 2.43
630 653 0.538118 TCGCTTGGCCCGTAGTTAAT 59.462 50.000 0.00 0.00 0.00 1.40
671 694 0.391597 TCTGACAGGTGGGTCGAAAC 59.608 55.000 1.81 0.00 40.72 2.78
672 695 0.679505 CTCTGACAGGTGGGTCGAAA 59.320 55.000 1.81 0.00 40.72 3.46
673 696 1.816863 GCTCTGACAGGTGGGTCGAA 61.817 60.000 1.81 0.00 40.72 3.71
761 795 1.389555 GACCGGGATTTAAAGGCCTG 58.610 55.000 5.69 10.39 0.00 4.85
800 834 0.172803 AATCCGACGGAAGAAGACGG 59.827 55.000 22.55 0.00 44.09 4.79
814 848 1.466167 CTGTGCTGTGAAGGAAATCCG 59.534 52.381 0.00 0.00 42.08 4.18
839 873 7.703197 CCCTTTGTTTTACGAGTTACAATTTGT 59.297 33.333 7.30 7.30 31.30 2.83
843 881 6.063404 TCCCCTTTGTTTTACGAGTTACAAT 58.937 36.000 0.00 0.00 31.30 2.71
873 915 3.187842 CGCGGCTAGGGTTTATATTTTCC 59.812 47.826 0.00 0.00 0.00 3.13
874 916 3.364664 GCGCGGCTAGGGTTTATATTTTC 60.365 47.826 8.83 0.00 34.93 2.29
875 917 2.551032 GCGCGGCTAGGGTTTATATTTT 59.449 45.455 8.83 0.00 34.93 1.82
876 918 2.148768 GCGCGGCTAGGGTTTATATTT 58.851 47.619 8.83 0.00 34.93 1.40
877 919 1.609841 GGCGCGGCTAGGGTTTATATT 60.610 52.381 27.05 0.00 34.93 1.28
878 920 0.036671 GGCGCGGCTAGGGTTTATAT 60.037 55.000 27.05 0.00 34.93 0.86
879 921 1.368579 GGCGCGGCTAGGGTTTATA 59.631 57.895 27.05 0.00 34.93 0.98
936 978 3.148279 GGCGATCCTGGTCTCCGT 61.148 66.667 0.00 0.00 0.00 4.69
966 1011 2.677875 GGACGGGTACTGGTCGGT 60.678 66.667 9.62 0.00 40.47 4.69
1396 1445 3.329386 TGAAGCAAGACGATCAGGAAAG 58.671 45.455 0.00 0.00 0.00 2.62
1399 1448 2.480244 CGATGAAGCAAGACGATCAGGA 60.480 50.000 0.00 0.00 0.00 3.86
1443 1493 1.355971 GCTCGTTGCTTCCGTTATCA 58.644 50.000 0.00 0.00 38.95 2.15
1451 1501 2.938823 TTCGTGCGCTCGTTGCTTC 61.939 57.895 28.33 0.00 40.11 3.86
1452 1502 2.964925 TTCGTGCGCTCGTTGCTT 60.965 55.556 28.33 0.00 40.11 3.91
1455 1505 1.817217 TTCAGTTCGTGCGCTCGTTG 61.817 55.000 28.33 23.17 0.00 4.10
2073 2135 6.295236 CCTTGATTAATCAAACTTTGGCTCCA 60.295 38.462 26.57 5.18 45.26 3.86
2084 2146 4.531854 TGGCCGATCCTTGATTAATCAAA 58.468 39.130 26.57 16.31 45.26 2.69
2324 2393 8.629158 TGAGTAAAAGCAACAATTCAACATACT 58.371 29.630 0.00 0.00 0.00 2.12
2325 2394 8.795786 TGAGTAAAAGCAACAATTCAACATAC 57.204 30.769 0.00 0.00 0.00 2.39
2370 2441 1.436983 GGCCGCCACATACTAGTTGC 61.437 60.000 3.91 0.00 0.00 4.17
2386 2457 2.019984 GATCACATTTCTCCACTGGCC 58.980 52.381 0.00 0.00 0.00 5.36
2408 2479 1.737793 CGCCACATACAAGTTCCTTCC 59.262 52.381 0.00 0.00 0.00 3.46
2409 2480 1.737793 CCGCCACATACAAGTTCCTTC 59.262 52.381 0.00 0.00 0.00 3.46
2410 2481 1.821216 CCGCCACATACAAGTTCCTT 58.179 50.000 0.00 0.00 0.00 3.36
2411 2482 0.676782 GCCGCCACATACAAGTTCCT 60.677 55.000 0.00 0.00 0.00 3.36
2416 2487 2.764314 GCTGGCCGCCACATACAAG 61.764 63.158 8.43 0.00 0.00 3.16
2417 2488 2.749839 GCTGGCCGCCACATACAA 60.750 61.111 8.43 0.00 0.00 2.41
2428 2499 4.704833 TTGTGCTCTCCGCTGGCC 62.705 66.667 0.00 0.00 40.11 5.36
2429 2500 1.589716 ATTTTGTGCTCTCCGCTGGC 61.590 55.000 0.00 0.00 40.11 4.85
2430 2501 0.883833 AATTTTGTGCTCTCCGCTGG 59.116 50.000 0.00 0.00 40.11 4.85
2431 2502 1.401931 CCAATTTTGTGCTCTCCGCTG 60.402 52.381 0.00 0.00 40.11 5.18
2432 2503 0.883833 CCAATTTTGTGCTCTCCGCT 59.116 50.000 0.00 0.00 40.11 5.52
2433 2504 0.109132 CCCAATTTTGTGCTCTCCGC 60.109 55.000 0.00 0.00 39.77 5.54
2434 2505 0.527565 CCCCAATTTTGTGCTCTCCG 59.472 55.000 0.00 0.00 0.00 4.63
2435 2506 1.273327 CACCCCAATTTTGTGCTCTCC 59.727 52.381 0.00 0.00 0.00 3.71
2440 2511 2.736192 CGATTTCACCCCAATTTTGTGC 59.264 45.455 0.00 0.00 0.00 4.57
2448 2519 0.768622 ACCACTCGATTTCACCCCAA 59.231 50.000 0.00 0.00 0.00 4.12
2497 2572 2.128035 GTCAGTTCAGTTCACCACTCG 58.872 52.381 0.00 0.00 30.92 4.18
2579 2654 1.601759 CACGCCATCCATCCATCCC 60.602 63.158 0.00 0.00 0.00 3.85
2580 2655 2.263741 GCACGCCATCCATCCATCC 61.264 63.158 0.00 0.00 0.00 3.51
2581 2656 2.610694 CGCACGCCATCCATCCATC 61.611 63.158 0.00 0.00 0.00 3.51
2582 2657 2.592574 CGCACGCCATCCATCCAT 60.593 61.111 0.00 0.00 0.00 3.41
2708 2783 6.600388 AGAGAATATCACTGTCTCAGCTAGA 58.400 40.000 0.00 0.00 40.26 2.43
2709 2784 6.882610 AGAGAATATCACTGTCTCAGCTAG 57.117 41.667 4.59 0.00 40.26 3.42
2833 2918 6.721208 TCTTTTAATCCTTGAACCAGCTTCAT 59.279 34.615 0.00 0.00 38.74 2.57
2834 2919 6.068010 TCTTTTAATCCTTGAACCAGCTTCA 58.932 36.000 0.00 0.00 37.08 3.02
2835 2920 6.575162 TCTTTTAATCCTTGAACCAGCTTC 57.425 37.500 0.00 0.00 0.00 3.86
2836 2921 6.551227 ACTTCTTTTAATCCTTGAACCAGCTT 59.449 34.615 0.00 0.00 0.00 3.74
2837 2922 6.071320 ACTTCTTTTAATCCTTGAACCAGCT 58.929 36.000 0.00 0.00 0.00 4.24
2838 2923 6.207614 AGACTTCTTTTAATCCTTGAACCAGC 59.792 38.462 0.00 0.00 0.00 4.85
2839 2924 7.663493 AGAGACTTCTTTTAATCCTTGAACCAG 59.337 37.037 0.00 0.00 0.00 4.00
2840 2925 7.518188 AGAGACTTCTTTTAATCCTTGAACCA 58.482 34.615 0.00 0.00 0.00 3.67
2841 2926 7.148557 CGAGAGACTTCTTTTAATCCTTGAACC 60.149 40.741 0.00 0.00 32.53 3.62
2842 2927 7.599245 TCGAGAGACTTCTTTTAATCCTTGAAC 59.401 37.037 0.00 0.00 32.53 3.18
2843 2928 7.667557 TCGAGAGACTTCTTTTAATCCTTGAA 58.332 34.615 0.00 0.00 32.53 2.69
2847 2932 8.973182 ACTATTCGAGAGACTTCTTTTAATCCT 58.027 33.333 3.62 0.00 41.84 3.24
2862 2947 8.622157 TCACCACTATCTTAAACTATTCGAGAG 58.378 37.037 0.00 0.00 0.00 3.20
2884 2969 0.034896 CACAGTACACCCACCTCACC 59.965 60.000 0.00 0.00 0.00 4.02
2885 2970 0.602905 GCACAGTACACCCACCTCAC 60.603 60.000 0.00 0.00 0.00 3.51
2886 2971 1.051556 TGCACAGTACACCCACCTCA 61.052 55.000 0.00 0.00 0.00 3.86
2917 3002 2.125753 CGTCACCTGAGCAGAGCC 60.126 66.667 0.00 0.00 0.00 4.70
2962 3057 7.565398 AGATATATGTATACACCACTCATCCCC 59.435 40.741 7.96 0.00 0.00 4.81
2967 3062 7.775053 TGCAGATATATGTATACACCACTCA 57.225 36.000 7.96 0.00 0.00 3.41
2972 3067 6.697455 CACCGATGCAGATATATGTATACACC 59.303 42.308 7.96 0.00 0.00 4.16
2973 3068 7.258441 ACACCGATGCAGATATATGTATACAC 58.742 38.462 7.96 0.00 0.00 2.90
2974 3069 7.404671 ACACCGATGCAGATATATGTATACA 57.595 36.000 8.27 8.27 0.00 2.29
3008 3106 4.723862 GCGCTGAATTAAACAATACGTGAG 59.276 41.667 0.00 0.00 0.00 3.51
3041 3140 2.878406 CCAAGATTCGGATTTACGGCAT 59.122 45.455 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.