Multiple sequence alignment - TraesCS4D01G276500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G276500 chr4D 100.000 4283 0 0 1 4283 447638020 447642302 0.000000e+00 7910.0
1 TraesCS4D01G276500 chr4D 96.535 202 6 1 74 275 437395404 437395604 2.470000e-87 333.0
2 TraesCS4D01G276500 chr4A 92.252 3291 176 28 342 3596 19623296 19620049 0.000000e+00 4591.0
3 TraesCS4D01G276500 chr4B 88.639 2447 198 42 1856 4281 560013452 560015839 0.000000e+00 2905.0
4 TraesCS4D01G276500 chr4B 92.054 1397 65 18 271 1658 560011998 560013357 0.000000e+00 1923.0
5 TraesCS4D01G276500 chr7D 96.172 209 7 1 67 274 593180782 593180990 1.470000e-89 340.0
6 TraesCS4D01G276500 chr7D 96.040 202 8 0 71 272 118926102 118926303 3.190000e-86 329.0
7 TraesCS4D01G276500 chr7D 81.081 148 17 3 1713 1851 30469517 30469662 1.630000e-19 108.0
8 TraesCS4D01G276500 chr3D 95.673 208 9 0 68 275 74404025 74404232 6.860000e-88 335.0
9 TraesCS4D01G276500 chr3D 96.482 199 7 0 74 272 29300995 29300797 3.190000e-86 329.0
10 TraesCS4D01G276500 chr1D 96.135 207 5 3 67 271 41295127 41295332 6.860000e-88 335.0
11 TraesCS4D01G276500 chr6D 96.040 202 8 0 71 272 244681609 244681810 3.190000e-86 329.0
12 TraesCS4D01G276500 chr5B 95.631 206 8 1 74 278 422567657 422567452 3.190000e-86 329.0
13 TraesCS4D01G276500 chr5B 84.914 232 31 4 1090 1319 612679823 612680052 9.260000e-57 231.0
14 TraesCS4D01G276500 chr5D 96.020 201 8 0 74 274 168559545 168559345 1.150000e-85 327.0
15 TraesCS4D01G276500 chr5D 85.470 234 30 4 1090 1321 495626196 495626427 1.540000e-59 241.0
16 TraesCS4D01G276500 chr5D 87.402 127 6 2 1736 1853 548975928 548976053 2.080000e-28 137.0
17 TraesCS4D01G276500 chr5D 86.466 133 7 3 1736 1858 214357639 214357770 7.470000e-28 135.0
18 TraesCS4D01G276500 chr1A 89.823 226 23 0 1093 1318 550314237 550314012 1.510000e-74 291.0
19 TraesCS4D01G276500 chr1B 89.177 231 24 1 1093 1323 627929088 627928859 1.950000e-73 287.0
20 TraesCS4D01G276500 chr1B 86.179 123 8 1 1739 1852 491703816 491703938 1.620000e-24 124.0
21 TraesCS4D01G276500 chr5A 84.000 250 35 4 1091 1337 619689721 619689968 7.160000e-58 235.0
22 TraesCS4D01G276500 chr7A 85.621 153 9 4 1713 1853 733031217 733031066 9.600000e-32 148.0
23 TraesCS4D01G276500 chr7A 83.333 150 12 10 1713 1852 642525056 642524910 4.500000e-25 126.0
24 TraesCS4D01G276500 chrUn 83.893 149 12 3 1713 1852 30115483 30115628 9.660000e-27 132.0
25 TraesCS4D01G276500 chrUn 85.366 123 8 2 1739 1852 367857937 367858058 7.520000e-23 119.0
26 TraesCS4D01G276500 chr6A 83.007 153 12 5 1713 1852 93344786 93344635 4.500000e-25 126.0
27 TraesCS4D01G276500 chr6A 82.581 155 11 6 1713 1852 93310651 93310498 5.820000e-24 122.0
28 TraesCS4D01G276500 chr3A 83.333 150 10 11 1713 1851 613529411 613529266 1.620000e-24 124.0
29 TraesCS4D01G276500 chr2B 82.517 143 15 7 1713 1852 793019274 793019139 2.710000e-22 117.0
30 TraesCS4D01G276500 chr2A 81.290 155 10 12 1713 1852 11648506 11648656 1.630000e-19 108.0
31 TraesCS4D01G276500 chr7B 97.500 40 1 0 3182 3221 192794673 192794634 7.680000e-08 69.4
32 TraesCS4D01G276500 chr3B 95.349 43 2 0 3179 3221 12396968 12397010 7.680000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G276500 chr4D 447638020 447642302 4282 False 7910 7910 100.0000 1 4283 1 chr4D.!!$F2 4282
1 TraesCS4D01G276500 chr4A 19620049 19623296 3247 True 4591 4591 92.2520 342 3596 1 chr4A.!!$R1 3254
2 TraesCS4D01G276500 chr4B 560011998 560015839 3841 False 2414 2905 90.3465 271 4281 2 chr4B.!!$F1 4010

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 309 0.108585 GCCGGATTGAAGATGCCCTA 59.891 55.0 5.05 0.00 0.00 3.53 F
1483 1496 0.099613 TCGCTCGAGCAAGAGATGAC 59.900 55.0 34.69 3.79 40.57 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1502 1515 0.037975 GAGCACCAAATGTTGCCCTG 60.038 55.0 0.0 0.0 0.00 4.45 R
3468 3559 0.689623 GCCGATGAGAATCCAGGGAT 59.310 55.0 0.0 0.0 36.23 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.674958 TAAGGGGTTCCAGACGTCC 58.325 57.895 13.01 0.00 34.83 4.79
19 20 1.252904 TAAGGGGTTCCAGACGTCCG 61.253 60.000 13.01 0.70 34.83 4.79
20 21 4.078516 GGGGTTCCAGACGTCCGG 62.079 72.222 11.84 11.84 0.00 5.14
21 22 3.308705 GGGTTCCAGACGTCCGGT 61.309 66.667 17.27 0.00 0.00 5.28
22 23 2.260743 GGTTCCAGACGTCCGGTC 59.739 66.667 17.27 11.42 46.45 4.79
29 30 3.776656 GACGTCCGGTCCGAAATG 58.223 61.111 14.39 8.51 39.90 2.32
30 31 1.213537 GACGTCCGGTCCGAAATGA 59.786 57.895 14.39 0.00 39.90 2.57
31 32 0.801067 GACGTCCGGTCCGAAATGAG 60.801 60.000 14.39 0.00 39.90 2.90
32 33 1.518572 CGTCCGGTCCGAAATGAGG 60.519 63.158 14.39 3.15 0.00 3.86
33 34 1.153429 GTCCGGTCCGAAATGAGGG 60.153 63.158 14.39 0.00 0.00 4.30
34 35 1.611261 TCCGGTCCGAAATGAGGGT 60.611 57.895 14.39 0.00 0.00 4.34
35 36 1.153429 CCGGTCCGAAATGAGGGTC 60.153 63.158 14.39 0.00 0.00 4.46
36 37 1.614241 CCGGTCCGAAATGAGGGTCT 61.614 60.000 14.39 0.00 0.00 3.85
37 38 0.460284 CGGTCCGAAATGAGGGTCTG 60.460 60.000 4.91 0.00 0.00 3.51
38 39 0.902531 GGTCCGAAATGAGGGTCTGA 59.097 55.000 0.00 0.00 0.00 3.27
39 40 1.278127 GGTCCGAAATGAGGGTCTGAA 59.722 52.381 0.00 0.00 0.00 3.02
40 41 2.092914 GGTCCGAAATGAGGGTCTGAAT 60.093 50.000 0.00 0.00 0.00 2.57
41 42 3.610911 GTCCGAAATGAGGGTCTGAATT 58.389 45.455 0.00 0.00 0.00 2.17
42 43 3.375299 GTCCGAAATGAGGGTCTGAATTG 59.625 47.826 0.00 0.00 0.00 2.32
43 44 2.684881 CCGAAATGAGGGTCTGAATTGG 59.315 50.000 0.00 0.00 0.00 3.16
44 45 3.609853 CGAAATGAGGGTCTGAATTGGA 58.390 45.455 0.00 0.00 0.00 3.53
45 46 4.009675 CGAAATGAGGGTCTGAATTGGAA 58.990 43.478 0.00 0.00 0.00 3.53
46 47 4.095483 CGAAATGAGGGTCTGAATTGGAAG 59.905 45.833 0.00 0.00 0.00 3.46
47 48 4.934797 AATGAGGGTCTGAATTGGAAGA 57.065 40.909 0.00 0.00 0.00 2.87
48 49 3.703001 TGAGGGTCTGAATTGGAAGAC 57.297 47.619 4.62 4.62 41.75 3.01
49 50 3.251484 TGAGGGTCTGAATTGGAAGACT 58.749 45.455 10.68 0.00 42.07 3.24
50 51 4.425772 TGAGGGTCTGAATTGGAAGACTA 58.574 43.478 10.68 0.00 42.07 2.59
51 52 4.844085 TGAGGGTCTGAATTGGAAGACTAA 59.156 41.667 10.68 0.00 42.07 2.24
52 53 5.309543 TGAGGGTCTGAATTGGAAGACTAAA 59.690 40.000 10.68 0.00 42.07 1.85
53 54 6.183361 TGAGGGTCTGAATTGGAAGACTAAAA 60.183 38.462 10.68 0.00 42.07 1.52
54 55 6.241645 AGGGTCTGAATTGGAAGACTAAAAG 58.758 40.000 10.68 0.00 42.07 2.27
55 56 6.004574 GGGTCTGAATTGGAAGACTAAAAGT 58.995 40.000 10.68 0.00 42.07 2.66
56 57 6.072452 GGGTCTGAATTGGAAGACTAAAAGTG 60.072 42.308 10.68 0.00 42.07 3.16
57 58 6.486993 GGTCTGAATTGGAAGACTAAAAGTGT 59.513 38.462 10.68 0.00 42.07 3.55
58 59 7.308049 GGTCTGAATTGGAAGACTAAAAGTGTC 60.308 40.741 10.68 0.00 42.07 3.67
59 60 7.226720 GTCTGAATTGGAAGACTAAAAGTGTCA 59.773 37.037 5.63 0.00 39.79 3.58
60 61 7.226720 TCTGAATTGGAAGACTAAAAGTGTCAC 59.773 37.037 0.00 0.00 36.94 3.67
61 62 5.924475 ATTGGAAGACTAAAAGTGTCACG 57.076 39.130 0.00 0.00 36.94 4.35
62 63 3.128349 TGGAAGACTAAAAGTGTCACGC 58.872 45.455 0.00 0.00 36.94 5.34
63 64 3.128349 GGAAGACTAAAAGTGTCACGCA 58.872 45.455 0.00 0.00 36.94 5.24
64 65 3.184581 GGAAGACTAAAAGTGTCACGCAG 59.815 47.826 0.00 0.00 36.94 5.18
65 66 3.728076 AGACTAAAAGTGTCACGCAGA 57.272 42.857 0.00 0.00 36.94 4.26
75 76 2.510615 GTCACGCAGACACATAAAGC 57.489 50.000 3.93 0.00 46.77 3.51
76 77 1.798223 GTCACGCAGACACATAAAGCA 59.202 47.619 3.93 0.00 46.77 3.91
77 78 2.416547 GTCACGCAGACACATAAAGCAT 59.583 45.455 3.93 0.00 46.77 3.79
78 79 2.416202 TCACGCAGACACATAAAGCATG 59.584 45.455 0.00 0.00 40.78 4.06
79 80 2.416202 CACGCAGACACATAAAGCATGA 59.584 45.455 0.00 0.00 38.10 3.07
80 81 3.064408 CACGCAGACACATAAAGCATGAT 59.936 43.478 0.00 0.00 38.10 2.45
81 82 3.691118 ACGCAGACACATAAAGCATGATT 59.309 39.130 0.00 0.00 38.10 2.57
82 83 4.033019 CGCAGACACATAAAGCATGATTG 58.967 43.478 0.00 0.00 38.10 2.67
83 84 4.357142 GCAGACACATAAAGCATGATTGG 58.643 43.478 0.00 0.00 38.10 3.16
84 85 4.142315 GCAGACACATAAAGCATGATTGGT 60.142 41.667 0.00 0.00 38.10 3.67
85 86 5.622914 GCAGACACATAAAGCATGATTGGTT 60.623 40.000 0.00 0.00 45.16 3.67
86 87 6.032094 CAGACACATAAAGCATGATTGGTTC 58.968 40.000 0.00 0.00 42.53 3.62
87 88 4.985413 ACACATAAAGCATGATTGGTTCG 58.015 39.130 0.00 0.00 42.53 3.95
88 89 4.699735 ACACATAAAGCATGATTGGTTCGA 59.300 37.500 0.00 0.00 42.53 3.71
89 90 5.357878 ACACATAAAGCATGATTGGTTCGAT 59.642 36.000 0.00 0.00 42.53 3.59
90 91 5.684184 CACATAAAGCATGATTGGTTCGATG 59.316 40.000 0.00 0.00 42.53 3.84
91 92 2.857592 AAGCATGATTGGTTCGATGC 57.142 45.000 0.00 0.00 39.27 3.91
92 93 1.027357 AGCATGATTGGTTCGATGCC 58.973 50.000 0.00 0.05 38.53 4.40
93 94 0.740149 GCATGATTGGTTCGATGCCA 59.260 50.000 0.00 5.26 35.03 4.92
100 101 2.791383 TGGTTCGATGCCAAAAGTTG 57.209 45.000 6.75 0.00 32.29 3.16
101 102 2.302260 TGGTTCGATGCCAAAAGTTGA 58.698 42.857 6.75 0.00 32.29 3.18
102 103 2.034053 TGGTTCGATGCCAAAAGTTGAC 59.966 45.455 6.75 0.00 32.29 3.18
103 104 2.034053 GGTTCGATGCCAAAAGTTGACA 59.966 45.455 2.10 0.00 0.00 3.58
104 105 3.305335 GGTTCGATGCCAAAAGTTGACAT 60.305 43.478 2.10 0.00 36.41 3.06
105 106 3.557577 TCGATGCCAAAAGTTGACATG 57.442 42.857 0.00 0.00 33.73 3.21
106 107 1.987770 CGATGCCAAAAGTTGACATGC 59.012 47.619 0.00 0.00 33.73 4.06
107 108 2.340337 GATGCCAAAAGTTGACATGCC 58.660 47.619 0.00 0.00 33.73 4.40
108 109 1.117994 TGCCAAAAGTTGACATGCCA 58.882 45.000 0.00 0.00 0.00 4.92
109 110 1.483827 TGCCAAAAGTTGACATGCCAA 59.516 42.857 0.00 0.00 0.00 4.52
110 111 2.104451 TGCCAAAAGTTGACATGCCAAT 59.896 40.909 0.00 0.00 0.00 3.16
111 112 3.323115 TGCCAAAAGTTGACATGCCAATA 59.677 39.130 0.00 0.00 0.00 1.90
112 113 4.020396 TGCCAAAAGTTGACATGCCAATAT 60.020 37.500 0.00 0.00 0.00 1.28
113 114 4.937015 GCCAAAAGTTGACATGCCAATATT 59.063 37.500 0.00 0.00 0.00 1.28
114 115 5.412286 GCCAAAAGTTGACATGCCAATATTT 59.588 36.000 0.00 0.31 0.00 1.40
115 116 6.621164 GCCAAAAGTTGACATGCCAATATTTG 60.621 38.462 19.21 19.21 35.98 2.32
145 146 5.151297 CCAAATTTTGGCTAGTGATTGGT 57.849 39.130 14.96 0.00 45.17 3.67
146 147 5.550290 CCAAATTTTGGCTAGTGATTGGTT 58.450 37.500 14.96 0.00 45.17 3.67
147 148 5.409214 CCAAATTTTGGCTAGTGATTGGTTG 59.591 40.000 14.96 0.00 45.17 3.77
148 149 4.806640 ATTTTGGCTAGTGATTGGTTGG 57.193 40.909 0.00 0.00 0.00 3.77
149 150 1.544724 TTGGCTAGTGATTGGTTGGC 58.455 50.000 0.00 0.00 0.00 4.52
150 151 0.698238 TGGCTAGTGATTGGTTGGCT 59.302 50.000 0.00 0.00 0.00 4.75
151 152 1.912731 TGGCTAGTGATTGGTTGGCTA 59.087 47.619 0.00 0.00 0.00 3.93
152 153 2.289565 GGCTAGTGATTGGTTGGCTAC 58.710 52.381 0.00 0.00 0.00 3.58
167 168 4.431416 TGGCTACCAACTTTTCTTCTCA 57.569 40.909 0.00 0.00 0.00 3.27
168 169 4.787551 TGGCTACCAACTTTTCTTCTCAA 58.212 39.130 0.00 0.00 0.00 3.02
169 170 4.578928 TGGCTACCAACTTTTCTTCTCAAC 59.421 41.667 0.00 0.00 0.00 3.18
170 171 4.023107 GGCTACCAACTTTTCTTCTCAACC 60.023 45.833 0.00 0.00 0.00 3.77
171 172 4.822350 GCTACCAACTTTTCTTCTCAACCT 59.178 41.667 0.00 0.00 0.00 3.50
172 173 5.049336 GCTACCAACTTTTCTTCTCAACCTC 60.049 44.000 0.00 0.00 0.00 3.85
173 174 4.855340 ACCAACTTTTCTTCTCAACCTCA 58.145 39.130 0.00 0.00 0.00 3.86
174 175 4.640647 ACCAACTTTTCTTCTCAACCTCAC 59.359 41.667 0.00 0.00 0.00 3.51
175 176 4.640201 CCAACTTTTCTTCTCAACCTCACA 59.360 41.667 0.00 0.00 0.00 3.58
176 177 5.125417 CCAACTTTTCTTCTCAACCTCACAA 59.875 40.000 0.00 0.00 0.00 3.33
177 178 6.350110 CCAACTTTTCTTCTCAACCTCACAAA 60.350 38.462 0.00 0.00 0.00 2.83
178 179 6.834168 ACTTTTCTTCTCAACCTCACAAAA 57.166 33.333 0.00 0.00 0.00 2.44
179 180 7.227049 ACTTTTCTTCTCAACCTCACAAAAA 57.773 32.000 0.00 0.00 0.00 1.94
180 181 7.315890 ACTTTTCTTCTCAACCTCACAAAAAG 58.684 34.615 0.00 0.00 37.27 2.27
181 182 6.834168 TTTCTTCTCAACCTCACAAAAAGT 57.166 33.333 0.00 0.00 0.00 2.66
182 183 6.834168 TTCTTCTCAACCTCACAAAAAGTT 57.166 33.333 0.00 0.00 0.00 2.66
183 184 6.194796 TCTTCTCAACCTCACAAAAAGTTG 57.805 37.500 0.00 0.00 40.72 3.16
184 185 4.370364 TCTCAACCTCACAAAAAGTTGC 57.630 40.909 0.00 0.00 39.51 4.17
185 186 3.130340 TCTCAACCTCACAAAAAGTTGCC 59.870 43.478 0.00 0.00 39.51 4.52
186 187 2.828520 TCAACCTCACAAAAAGTTGCCA 59.171 40.909 0.00 0.00 39.51 4.92
187 188 3.259374 TCAACCTCACAAAAAGTTGCCAA 59.741 39.130 0.00 0.00 39.51 4.52
188 189 3.245518 ACCTCACAAAAAGTTGCCAAC 57.754 42.857 0.00 0.00 38.39 3.77
189 190 2.564947 ACCTCACAAAAAGTTGCCAACA 59.435 40.909 10.69 0.00 38.39 3.33
190 191 3.197549 ACCTCACAAAAAGTTGCCAACAT 59.802 39.130 10.69 0.00 38.39 2.71
191 192 4.190772 CCTCACAAAAAGTTGCCAACATT 58.809 39.130 10.69 0.60 38.39 2.71
192 193 4.635324 CCTCACAAAAAGTTGCCAACATTT 59.365 37.500 10.69 7.67 38.39 2.32
193 194 5.447548 CCTCACAAAAAGTTGCCAACATTTG 60.448 40.000 24.88 24.88 41.84 2.32
206 207 5.754543 CCAACATTTGGCAACTTTTGATT 57.245 34.783 15.45 0.00 45.17 2.57
207 208 6.134040 CCAACATTTGGCAACTTTTGATTT 57.866 33.333 15.45 0.00 45.17 2.17
208 209 6.562518 CCAACATTTGGCAACTTTTGATTTT 58.437 32.000 15.45 0.00 45.17 1.82
209 210 6.472808 CCAACATTTGGCAACTTTTGATTTTG 59.527 34.615 15.45 8.13 45.17 2.44
210 211 5.580661 ACATTTGGCAACTTTTGATTTTGC 58.419 33.333 0.00 0.00 44.05 3.68
217 218 5.580661 GCAACTTTTGATTTTGCCAAATGT 58.419 33.333 0.00 0.00 40.94 2.71
218 219 6.035217 GCAACTTTTGATTTTGCCAAATGTT 58.965 32.000 0.00 5.81 44.92 2.71
260 261 1.994916 CCAATTGTCGGCATCAAACC 58.005 50.000 4.43 0.00 0.00 3.27
261 262 1.271934 CCAATTGTCGGCATCAAACCA 59.728 47.619 4.43 0.00 0.00 3.67
262 263 2.288702 CCAATTGTCGGCATCAAACCAA 60.289 45.455 4.43 0.00 0.00 3.67
263 264 3.587923 CAATTGTCGGCATCAAACCAAT 58.412 40.909 0.00 0.00 0.00 3.16
264 265 3.959535 ATTGTCGGCATCAAACCAATT 57.040 38.095 0.00 0.00 0.00 2.32
265 266 5.167121 CAATTGTCGGCATCAAACCAATTA 58.833 37.500 0.00 0.00 32.82 1.40
266 267 5.596836 ATTGTCGGCATCAAACCAATTAT 57.403 34.783 0.00 0.00 0.00 1.28
267 268 4.368874 TGTCGGCATCAAACCAATTATG 57.631 40.909 0.00 0.00 0.00 1.90
268 269 3.115554 GTCGGCATCAAACCAATTATGC 58.884 45.455 0.00 0.00 43.13 3.14
269 270 3.023119 TCGGCATCAAACCAATTATGCT 58.977 40.909 8.17 0.00 43.33 3.79
272 273 4.500205 CGGCATCAAACCAATTATGCTCAT 60.500 41.667 8.17 0.00 43.33 2.90
285 286 1.779221 TGCTCATAGGGGCAATTTGG 58.221 50.000 0.00 0.00 35.40 3.28
294 295 1.976474 GGCAATTTGGTGAGCCGGA 60.976 57.895 5.05 0.00 37.41 5.14
308 309 0.108585 GCCGGATTGAAGATGCCCTA 59.891 55.000 5.05 0.00 0.00 3.53
382 383 3.705604 ACACAGAAAGCGACAAAATTGG 58.294 40.909 0.00 0.00 0.00 3.16
431 432 6.721704 AACAGAGATATGACATGAGCACTA 57.278 37.500 0.00 0.00 0.00 2.74
482 490 2.544267 CCTTTCCAGAGAACACACGAAC 59.456 50.000 0.00 0.00 0.00 3.95
493 501 2.742372 CACGAACAAGCCCGGGAG 60.742 66.667 29.31 16.10 0.00 4.30
498 506 0.881796 GAACAAGCCCGGGAGAAAAG 59.118 55.000 29.31 9.56 0.00 2.27
499 507 1.179174 AACAAGCCCGGGAGAAAAGC 61.179 55.000 29.31 6.58 0.00 3.51
501 509 1.152830 AAGCCCGGGAGAAAAGCAA 59.847 52.632 29.31 0.00 0.00 3.91
508 516 2.287608 CCGGGAGAAAAGCAACAACTTC 60.288 50.000 0.00 0.00 0.00 3.01
517 525 0.307760 GCAACAACTTCTGTGTCCCG 59.692 55.000 0.00 0.00 38.67 5.14
577 585 1.302752 TTGCAGCCAATCACGAGCT 60.303 52.632 0.00 0.00 37.32 4.09
584 593 1.656652 CCAATCACGAGCTCGGAAAT 58.343 50.000 36.93 23.95 44.95 2.17
906 915 1.008538 CAAAGACCACCTGCGTTGC 60.009 57.895 0.00 0.00 0.00 4.17
921 930 2.250939 TTGCGTGCCACTGTGCTAC 61.251 57.895 1.29 2.63 0.00 3.58
922 931 3.423154 GCGTGCCACTGTGCTACC 61.423 66.667 1.29 0.00 0.00 3.18
1080 1093 0.907230 AGGAGGAGGAGTTGGAGCAC 60.907 60.000 0.00 0.00 0.00 4.40
1164 1177 4.657824 ACGTTCGACCTGGTGGCG 62.658 66.667 2.82 5.66 36.63 5.69
1296 1309 1.179814 ACTTCTCCAGCTTCGTCCGT 61.180 55.000 0.00 0.00 0.00 4.69
1318 1331 2.228103 CAGCTCAACACCTACGTGAGTA 59.772 50.000 0.00 0.00 46.88 2.59
1331 1344 2.226330 CGTGAGTATCTCCTCTCCTGG 58.774 57.143 0.00 0.00 34.92 4.45
1332 1345 1.960689 GTGAGTATCTCCTCTCCTGGC 59.039 57.143 0.00 0.00 34.92 4.85
1333 1346 1.133325 TGAGTATCTCCTCTCCTGGCC 60.133 57.143 0.00 0.00 34.92 5.36
1334 1347 1.146982 GAGTATCTCCTCTCCTGGCCT 59.853 57.143 3.32 0.00 0.00 5.19
1335 1348 1.133199 AGTATCTCCTCTCCTGGCCTG 60.133 57.143 3.32 2.54 0.00 4.85
1337 1350 3.478274 CTCCTCTCCTGGCCTGCC 61.478 72.222 3.32 0.00 0.00 4.85
1338 1351 3.999705 CTCCTCTCCTGGCCTGCCT 63.000 68.421 9.97 0.00 36.94 4.75
1339 1352 3.478274 CCTCTCCTGGCCTGCCTC 61.478 72.222 9.97 0.00 36.94 4.70
1340 1353 3.478274 CTCTCCTGGCCTGCCTCC 61.478 72.222 9.97 0.00 36.94 4.30
1341 1354 3.999705 CTCTCCTGGCCTGCCTCCT 63.000 68.421 9.97 0.00 36.94 3.69
1342 1355 3.478274 CTCCTGGCCTGCCTCCTC 61.478 72.222 9.97 0.00 36.94 3.71
1345 1358 3.478274 CTGGCCTGCCTCCTCCTC 61.478 72.222 9.97 0.00 36.94 3.71
1346 1359 3.999705 CTGGCCTGCCTCCTCCTCT 63.000 68.421 9.97 0.00 36.94 3.69
1347 1360 3.478274 GGCCTGCCTCCTCCTCTG 61.478 72.222 0.00 0.00 0.00 3.35
1348 1361 3.478274 GCCTGCCTCCTCCTCTGG 61.478 72.222 0.00 0.00 0.00 3.86
1349 1362 2.040278 CCTGCCTCCTCCTCTGGT 59.960 66.667 0.00 0.00 0.00 4.00
1350 1363 1.614824 CCTGCCTCCTCCTCTGGTT 60.615 63.158 0.00 0.00 0.00 3.67
1351 1364 1.601171 CTGCCTCCTCCTCTGGTTG 59.399 63.158 0.00 0.00 0.00 3.77
1352 1365 2.270527 GCCTCCTCCTCTGGTTGC 59.729 66.667 0.00 0.00 0.00 4.17
1353 1366 2.993853 CCTCCTCCTCTGGTTGCC 59.006 66.667 0.00 0.00 0.00 4.52
1354 1367 1.614824 CCTCCTCCTCTGGTTGCCT 60.615 63.158 0.00 0.00 0.00 4.75
1355 1368 0.325671 CCTCCTCCTCTGGTTGCCTA 60.326 60.000 0.00 0.00 0.00 3.93
1356 1369 1.118838 CTCCTCCTCTGGTTGCCTAG 58.881 60.000 0.00 0.00 0.00 3.02
1357 1370 0.413832 TCCTCCTCTGGTTGCCTAGT 59.586 55.000 0.00 0.00 0.00 2.57
1358 1371 1.644337 TCCTCCTCTGGTTGCCTAGTA 59.356 52.381 0.00 0.00 0.00 1.82
1359 1372 2.043939 TCCTCCTCTGGTTGCCTAGTAA 59.956 50.000 0.00 0.00 0.00 2.24
1360 1373 2.432510 CCTCCTCTGGTTGCCTAGTAAG 59.567 54.545 0.00 0.00 0.00 2.34
1361 1374 2.432510 CTCCTCTGGTTGCCTAGTAAGG 59.567 54.545 0.00 0.00 46.76 2.69
1369 1382 4.222145 TGGTTGCCTAGTAAGGTTACTCAG 59.778 45.833 5.66 1.08 45.64 3.35
1392 1405 7.656137 TCAGTCATTACTTGTTCAGTTAACCTC 59.344 37.037 0.88 0.00 36.88 3.85
1403 1416 1.968493 AGTTAACCTCCACTTGCGAGA 59.032 47.619 8.31 0.00 0.00 4.04
1419 1432 0.657840 GAGACGCTTGCTTGTGTTGT 59.342 50.000 0.00 0.00 0.00 3.32
1426 1439 2.352342 GCTTGCTTGTGTTGTTGCAATT 59.648 40.909 0.59 0.00 43.17 2.32
1427 1440 3.555139 GCTTGCTTGTGTTGTTGCAATTA 59.445 39.130 0.59 0.00 43.17 1.40
1465 1478 4.254492 AGAACCAAGATTTTAGCCGAGTC 58.746 43.478 0.00 0.00 0.00 3.36
1469 1482 2.211353 AGATTTTAGCCGAGTCGCTC 57.789 50.000 7.12 0.60 40.39 5.03
1483 1496 0.099613 TCGCTCGAGCAAGAGATGAC 59.900 55.000 34.69 3.79 40.57 3.06
1485 1498 0.529555 GCTCGAGCAAGAGATGACCC 60.530 60.000 31.91 0.00 40.57 4.46
1487 1500 1.205655 CTCGAGCAAGAGATGACCCAA 59.794 52.381 0.00 0.00 40.57 4.12
1494 1507 5.021458 AGCAAGAGATGACCCAAAAATGAT 58.979 37.500 0.00 0.00 0.00 2.45
1497 1510 8.000709 AGCAAGAGATGACCCAAAAATGATATA 58.999 33.333 0.00 0.00 0.00 0.86
1539 1559 2.545113 GCTCGTCTTACAACTGTGGTGA 60.545 50.000 0.00 0.00 0.00 4.02
1540 1560 3.050619 CTCGTCTTACAACTGTGGTGAC 58.949 50.000 0.00 0.00 0.00 3.67
1541 1561 2.691526 TCGTCTTACAACTGTGGTGACT 59.308 45.455 0.00 0.00 0.00 3.41
1543 1563 4.521639 TCGTCTTACAACTGTGGTGACTAT 59.478 41.667 0.00 0.00 0.00 2.12
1544 1564 4.621460 CGTCTTACAACTGTGGTGACTATG 59.379 45.833 0.00 0.00 0.00 2.23
1545 1565 4.929808 GTCTTACAACTGTGGTGACTATGG 59.070 45.833 0.00 0.00 0.00 2.74
1635 1664 5.048846 AGATGGTTCAGTTTGGTAGTTGT 57.951 39.130 0.00 0.00 0.00 3.32
1645 1674 7.208777 TCAGTTTGGTAGTTGTGTACGAATTA 58.791 34.615 0.00 0.00 0.00 1.40
1717 1797 6.046593 CGGTTCTATATGGCAGTGAACTTTA 58.953 40.000 17.54 0.00 37.66 1.85
1727 1807 3.120649 GCAGTGAACTTTACTAGTTGCCG 60.121 47.826 0.00 0.00 47.00 5.69
1728 1808 3.432252 CAGTGAACTTTACTAGTTGCCGG 59.568 47.826 0.00 0.00 47.00 6.13
1729 1809 2.159037 GTGAACTTTACTAGTTGCCGGC 59.841 50.000 22.73 22.73 47.00 6.13
1730 1810 2.224329 TGAACTTTACTAGTTGCCGGCA 60.224 45.455 29.03 29.03 47.00 5.69
1731 1811 2.781681 ACTTTACTAGTTGCCGGCAT 57.218 45.000 33.25 19.97 31.29 4.40
1732 1812 2.356135 ACTTTACTAGTTGCCGGCATG 58.644 47.619 33.25 21.99 31.29 4.06
1733 1813 2.290071 ACTTTACTAGTTGCCGGCATGT 60.290 45.455 33.25 26.13 31.29 3.21
1734 1814 2.483014 TTACTAGTTGCCGGCATGTT 57.517 45.000 33.25 20.68 0.00 2.71
1735 1815 2.483014 TACTAGTTGCCGGCATGTTT 57.517 45.000 33.25 18.05 0.00 2.83
1736 1816 1.616159 ACTAGTTGCCGGCATGTTTT 58.384 45.000 33.25 16.20 0.00 2.43
1737 1817 1.960689 ACTAGTTGCCGGCATGTTTTT 59.039 42.857 33.25 14.38 0.00 1.94
1781 1861 2.063979 CATCCAGAGGCCGGGTGTA 61.064 63.158 2.18 0.00 0.00 2.90
1783 1863 0.190069 ATCCAGAGGCCGGGTGTATA 59.810 55.000 2.18 0.00 0.00 1.47
1803 1883 8.114290 GTGTATACTCATTGTGTTTTGTATCCG 58.886 37.037 4.17 0.00 0.00 4.18
1822 1902 3.255395 TCCGCTTGATGCTTCATTTTGAA 59.745 39.130 2.75 0.00 40.11 2.69
2004 2089 4.489810 AGCTTGATCTTCAACAGACTACG 58.510 43.478 0.00 0.00 32.83 3.51
2045 2133 9.443365 AGTACTCCTACTAGGATAGATAGGATC 57.557 40.741 5.20 0.00 44.81 3.36
2084 2173 6.273825 CCACTATCTGCTTACGTAAAGTCAT 58.726 40.000 9.68 2.64 37.53 3.06
2204 2295 1.988107 AGAACAAGGAGATGCTGGGAA 59.012 47.619 0.00 0.00 0.00 3.97
2223 2314 3.796764 GCTGAATAGCCTGCCTCTT 57.203 52.632 0.00 0.00 44.33 2.85
2253 2344 9.438291 GACGAACATATTTAATTTCTGACATGG 57.562 33.333 0.00 0.00 0.00 3.66
2278 2369 6.539103 GTCTTTCTCCAACTTCTTACTGTGTT 59.461 38.462 0.00 0.00 0.00 3.32
2455 2546 3.788333 ATGTTGTGAAGTATGCCATGC 57.212 42.857 0.00 0.00 0.00 4.06
2482 2573 0.942884 GCTTTGCTGCTTGTGGCTTC 60.943 55.000 0.00 0.00 42.39 3.86
2686 2777 3.456277 ACCATTGTCCTATCTCCCTTCAC 59.544 47.826 0.00 0.00 0.00 3.18
2691 2782 2.838202 GTCCTATCTCCCTTCACCACAA 59.162 50.000 0.00 0.00 0.00 3.33
2694 2785 3.200825 CCTATCTCCCTTCACCACAACAT 59.799 47.826 0.00 0.00 0.00 2.71
2736 2827 0.609131 AGGTTGGCCAGTTCGGATTG 60.609 55.000 5.11 0.00 36.56 2.67
2783 2874 1.400629 CGACAAGAACGCCTTACTCGA 60.401 52.381 9.77 0.00 36.83 4.04
2928 3019 4.779993 ACAGAACCCTGACTTCTTTCTT 57.220 40.909 0.00 0.00 43.02 2.52
2961 3052 5.416952 CCAGCAACAAGATAAACTGAAGGAT 59.583 40.000 0.00 0.00 0.00 3.24
2964 3055 6.944862 AGCAACAAGATAAACTGAAGGATCTT 59.055 34.615 0.00 0.00 38.81 2.40
2972 3063 1.205893 ACTGAAGGATCTTGAGGACGC 59.794 52.381 0.00 0.00 0.00 5.19
2976 3067 3.706594 TGAAGGATCTTGAGGACGCTTAT 59.293 43.478 0.00 0.00 0.00 1.73
2977 3068 4.162320 TGAAGGATCTTGAGGACGCTTATT 59.838 41.667 0.00 0.00 0.00 1.40
2981 3072 3.861276 TCTTGAGGACGCTTATTCGAA 57.139 42.857 0.00 0.00 0.00 3.71
2982 3073 3.508762 TCTTGAGGACGCTTATTCGAAC 58.491 45.455 0.00 0.00 0.00 3.95
2995 3086 2.011122 TTCGAACAAGAGGAGGAGGT 57.989 50.000 0.00 0.00 0.00 3.85
3140 3231 1.358830 ATCAGGAAGGGCATGGAGGG 61.359 60.000 0.00 0.00 0.00 4.30
3157 3248 2.657237 GTGACAGAGGTGGTCGGG 59.343 66.667 0.00 0.00 38.10 5.14
3162 3253 0.544357 ACAGAGGTGGTCGGGATCAA 60.544 55.000 0.00 0.00 0.00 2.57
3241 3332 1.767088 TGAGGGATGAAGCTGAGATGG 59.233 52.381 0.00 0.00 0.00 3.51
3300 3391 2.128771 AGCGCAAAGTATGGGTCATT 57.871 45.000 11.47 0.00 43.56 2.57
3475 3566 8.174733 TCTAGTCGTATAAAAACTATCCCTGG 57.825 38.462 0.00 0.00 0.00 4.45
3486 3577 3.169099 ACTATCCCTGGATTCTCATCGG 58.831 50.000 3.59 0.00 36.17 4.18
3494 3585 3.009723 TGGATTCTCATCGGCAGTTTTC 58.990 45.455 0.00 0.00 0.00 2.29
3510 3601 6.597280 GGCAGTTTTCTACTCTGATGATCTTT 59.403 38.462 0.00 0.00 33.85 2.52
3542 3637 2.693591 AGGCCTGCTGAATGAATGATTG 59.306 45.455 3.11 0.00 0.00 2.67
3547 3642 5.623824 GCCTGCTGAATGAATGATTGTTCTT 60.624 40.000 0.00 0.00 0.00 2.52
3553 3648 7.814107 GCTGAATGAATGATTGTTCTTGGTTTA 59.186 33.333 0.00 0.00 0.00 2.01
3575 3670 1.620822 ATCTGCAACCGAAGCCTTTT 58.379 45.000 0.00 0.00 0.00 2.27
3577 3672 0.940991 CTGCAACCGAAGCCTTTTGC 60.941 55.000 5.57 5.57 43.80 3.68
3578 3673 1.664649 GCAACCGAAGCCTTTTGCC 60.665 57.895 1.68 0.00 42.71 4.52
3580 3675 0.318955 CAACCGAAGCCTTTTGCCTG 60.319 55.000 0.00 0.00 42.71 4.85
3605 3700 0.608130 CCTAGTGTGCCTAGTGTGCA 59.392 55.000 0.00 0.00 41.48 4.57
3649 3744 7.678947 ATAACCATTGCATTGATAGCTCTAC 57.321 36.000 10.14 0.00 0.00 2.59
3655 3750 7.148457 CCATTGCATTGATAGCTCTACTGTATG 60.148 40.741 10.14 0.00 0.00 2.39
3664 3759 3.259374 AGCTCTACTGTATGTTGCAGTGT 59.741 43.478 8.27 0.00 45.59 3.55
3669 3764 7.491372 GCTCTACTGTATGTTGCAGTGTTAATA 59.509 37.037 8.27 0.00 45.59 0.98
3701 3796 4.666512 AGAATGGTTGTATTGCAGTTCCT 58.333 39.130 0.00 0.00 0.00 3.36
3703 3798 2.513753 TGGTTGTATTGCAGTTCCTGG 58.486 47.619 0.00 0.00 31.21 4.45
3705 3800 3.073209 TGGTTGTATTGCAGTTCCTGGTA 59.927 43.478 0.00 0.00 31.21 3.25
3706 3801 4.263727 TGGTTGTATTGCAGTTCCTGGTAT 60.264 41.667 0.00 0.00 31.21 2.73
3707 3802 4.096382 GGTTGTATTGCAGTTCCTGGTATG 59.904 45.833 0.00 0.00 31.21 2.39
3709 3804 4.260985 TGTATTGCAGTTCCTGGTATGTG 58.739 43.478 0.00 0.00 31.21 3.21
3710 3805 2.198827 TTGCAGTTCCTGGTATGTGG 57.801 50.000 0.00 0.00 31.21 4.17
3711 3806 0.322456 TGCAGTTCCTGGTATGTGGC 60.322 55.000 0.00 0.00 31.21 5.01
3712 3807 0.322456 GCAGTTCCTGGTATGTGGCA 60.322 55.000 0.00 0.00 31.21 4.92
3713 3808 1.683011 GCAGTTCCTGGTATGTGGCAT 60.683 52.381 0.00 0.00 31.21 4.40
3714 3809 2.421388 GCAGTTCCTGGTATGTGGCATA 60.421 50.000 0.00 0.00 31.21 3.14
3715 3810 3.884895 CAGTTCCTGGTATGTGGCATAA 58.115 45.455 0.00 0.00 0.00 1.90
3716 3811 4.464008 CAGTTCCTGGTATGTGGCATAAT 58.536 43.478 0.00 0.00 0.00 1.28
3717 3812 5.620206 CAGTTCCTGGTATGTGGCATAATA 58.380 41.667 0.00 0.00 0.00 0.98
3719 3814 6.545666 CAGTTCCTGGTATGTGGCATAATAAA 59.454 38.462 0.00 0.00 0.00 1.40
3720 3815 7.068103 CAGTTCCTGGTATGTGGCATAATAAAA 59.932 37.037 0.00 0.00 0.00 1.52
3721 3816 7.285401 AGTTCCTGGTATGTGGCATAATAAAAG 59.715 37.037 0.00 0.00 0.00 2.27
3723 3818 5.278957 CCTGGTATGTGGCATAATAAAAGGC 60.279 44.000 0.00 0.00 0.00 4.35
3724 3819 5.454062 TGGTATGTGGCATAATAAAAGGCT 58.546 37.500 0.00 0.00 0.00 4.58
3725 3820 5.301551 TGGTATGTGGCATAATAAAAGGCTG 59.698 40.000 0.00 0.00 0.00 4.85
3728 3828 4.599041 TGTGGCATAATAAAAGGCTGTCT 58.401 39.130 0.00 0.00 0.00 3.41
3760 3860 6.371548 TCTTATCGACAATTTTCTGAACCCTG 59.628 38.462 0.00 0.00 0.00 4.45
3761 3861 4.079980 TCGACAATTTTCTGAACCCTGA 57.920 40.909 0.00 0.00 0.00 3.86
3764 3864 4.216257 CGACAATTTTCTGAACCCTGATGT 59.784 41.667 0.00 0.00 0.00 3.06
3778 3878 3.629398 CCCTGATGTTCTTAGTTCATGCC 59.371 47.826 0.00 0.00 0.00 4.40
3780 3880 3.270027 TGATGTTCTTAGTTCATGCCCG 58.730 45.455 0.00 0.00 0.00 6.13
3784 3884 1.823899 CTTAGTTCATGCCCGGGCC 60.824 63.158 41.75 26.08 41.09 5.80
3785 3885 2.270874 CTTAGTTCATGCCCGGGCCT 62.271 60.000 41.75 31.24 41.09 5.19
3786 3886 2.550699 TTAGTTCATGCCCGGGCCTG 62.551 60.000 41.75 39.17 41.09 4.85
3787 3887 4.740822 GTTCATGCCCGGGCCTGT 62.741 66.667 39.13 25.92 41.09 4.00
3788 3888 4.424711 TTCATGCCCGGGCCTGTC 62.425 66.667 39.13 18.16 41.09 3.51
3816 3916 6.155475 TGGAATGATCGTTTCTTGGTTTTT 57.845 33.333 7.48 0.00 0.00 1.94
3820 3920 7.223777 GGAATGATCGTTTCTTGGTTTTTGAAA 59.776 33.333 0.77 0.00 0.00 2.69
3826 3926 6.147821 TCGTTTCTTGGTTTTTGAAATTGCAA 59.852 30.769 0.00 0.00 33.20 4.08
3843 3943 1.002468 GCAACTGAAGCTTTTCTGCGA 60.002 47.619 0.00 0.00 38.13 5.10
3879 3979 8.556194 TGTACTTGATATATTTTGACGAATGCC 58.444 33.333 0.00 0.00 0.00 4.40
3884 3984 2.900122 ATTTTGACGAATGCCAGACG 57.100 45.000 0.00 0.00 0.00 4.18
3891 3991 2.991190 GACGAATGCCAGACGAACTAAA 59.009 45.455 0.00 0.00 0.00 1.85
3902 4002 3.751698 AGACGAACTAAAGCACAATTCCC 59.248 43.478 0.00 0.00 0.00 3.97
3904 4004 2.817258 CGAACTAAAGCACAATTCCCCA 59.183 45.455 0.00 0.00 0.00 4.96
3912 4012 2.631062 AGCACAATTCCCCATGCATATG 59.369 45.455 0.00 0.00 40.63 1.78
3920 4020 2.985311 TCCCCATGCATATGTGTGGATA 59.015 45.455 22.48 11.73 33.53 2.59
3950 4050 5.212532 ACCTTGCAAAATGATGCTGTTTA 57.787 34.783 0.00 0.00 46.54 2.01
3976 4076 8.658499 AACCTGAAATTTACATATACTCGGAC 57.342 34.615 0.00 0.00 0.00 4.79
3981 4081 8.086522 TGAAATTTACATATACTCGGACTAGCC 58.913 37.037 0.00 0.00 0.00 3.93
3987 4087 7.534723 ACATATACTCGGACTAGCCAAAATA 57.465 36.000 0.00 0.00 35.94 1.40
3995 4095 5.995282 TCGGACTAGCCAAAATACCATTATG 59.005 40.000 0.00 0.00 35.94 1.90
4208 4308 6.601613 TGAAGTGGATTATTAAATGAAGCCGT 59.398 34.615 0.00 0.00 33.69 5.68
4209 4309 7.771361 TGAAGTGGATTATTAAATGAAGCCGTA 59.229 33.333 0.00 0.00 33.69 4.02
4213 4313 8.185505 GTGGATTATTAAATGAAGCCGTACAAA 58.814 33.333 0.00 0.00 33.69 2.83
4214 4314 8.908903 TGGATTATTAAATGAAGCCGTACAAAT 58.091 29.630 0.00 0.00 33.69 2.32
4229 4332 7.704899 AGCCGTACAAATATTTAGGAAAAATGC 59.295 33.333 0.00 0.00 0.00 3.56
4230 4333 7.489757 GCCGTACAAATATTTAGGAAAAATGCA 59.510 33.333 0.00 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.252904 CGGACGTCTGGAACCCCTTA 61.253 60.000 16.99 0.00 0.00 2.69
1 2 2.580601 CGGACGTCTGGAACCCCTT 61.581 63.158 16.99 0.00 0.00 3.95
2 3 2.995574 CGGACGTCTGGAACCCCT 60.996 66.667 16.99 0.00 0.00 4.79
3 4 4.078516 CCGGACGTCTGGAACCCC 62.079 72.222 35.70 6.58 45.36 4.95
4 5 3.292500 GACCGGACGTCTGGAACCC 62.293 68.421 42.84 25.71 45.36 4.11
5 6 2.260743 GACCGGACGTCTGGAACC 59.739 66.667 42.84 27.85 45.36 3.62
6 7 2.260743 GGACCGGACGTCTGGAAC 59.739 66.667 42.84 32.90 45.36 3.62
7 8 3.367743 CGGACCGGACGTCTGGAA 61.368 66.667 42.84 0.00 45.36 3.53
8 9 3.848301 TTCGGACCGGACGTCTGGA 62.848 63.158 42.84 22.69 46.44 3.86
9 10 2.221906 ATTTCGGACCGGACGTCTGG 62.222 60.000 36.59 36.59 46.44 3.86
11 12 1.214589 CATTTCGGACCGGACGTCT 59.785 57.895 16.46 0.00 41.64 4.18
12 13 0.801067 CTCATTTCGGACCGGACGTC 60.801 60.000 15.25 7.13 41.15 4.34
13 14 1.214589 CTCATTTCGGACCGGACGT 59.785 57.895 15.25 0.00 0.00 4.34
14 15 1.518572 CCTCATTTCGGACCGGACG 60.519 63.158 15.25 13.27 0.00 4.79
15 16 1.153429 CCCTCATTTCGGACCGGAC 60.153 63.158 15.25 0.00 0.00 4.79
16 17 1.610554 GACCCTCATTTCGGACCGGA 61.611 60.000 15.25 0.77 0.00 5.14
17 18 1.153429 GACCCTCATTTCGGACCGG 60.153 63.158 15.25 0.00 0.00 5.28
18 19 0.460284 CAGACCCTCATTTCGGACCG 60.460 60.000 7.84 7.84 0.00 4.79
19 20 0.902531 TCAGACCCTCATTTCGGACC 59.097 55.000 0.00 0.00 0.00 4.46
20 21 2.762535 TTCAGACCCTCATTTCGGAC 57.237 50.000 0.00 0.00 0.00 4.79
21 22 3.609853 CAATTCAGACCCTCATTTCGGA 58.390 45.455 0.00 0.00 0.00 4.55
22 23 2.684881 CCAATTCAGACCCTCATTTCGG 59.315 50.000 0.00 0.00 0.00 4.30
23 24 3.609853 TCCAATTCAGACCCTCATTTCG 58.390 45.455 0.00 0.00 0.00 3.46
24 25 5.124617 GTCTTCCAATTCAGACCCTCATTTC 59.875 44.000 0.00 0.00 34.43 2.17
25 26 5.012893 GTCTTCCAATTCAGACCCTCATTT 58.987 41.667 0.00 0.00 34.43 2.32
26 27 4.290722 AGTCTTCCAATTCAGACCCTCATT 59.709 41.667 5.65 0.00 40.42 2.57
27 28 3.848975 AGTCTTCCAATTCAGACCCTCAT 59.151 43.478 5.65 0.00 40.42 2.90
28 29 3.251484 AGTCTTCCAATTCAGACCCTCA 58.749 45.455 5.65 0.00 40.42 3.86
29 30 3.990959 AGTCTTCCAATTCAGACCCTC 57.009 47.619 5.65 0.00 40.42 4.30
30 31 5.843019 TTTAGTCTTCCAATTCAGACCCT 57.157 39.130 5.65 0.00 40.42 4.34
31 32 6.004574 ACTTTTAGTCTTCCAATTCAGACCC 58.995 40.000 5.65 0.00 40.42 4.46
32 33 6.486993 ACACTTTTAGTCTTCCAATTCAGACC 59.513 38.462 5.65 0.00 40.42 3.85
33 34 7.226720 TGACACTTTTAGTCTTCCAATTCAGAC 59.773 37.037 0.00 2.04 39.92 3.51
34 35 7.226720 GTGACACTTTTAGTCTTCCAATTCAGA 59.773 37.037 0.00 0.00 36.94 3.27
35 36 7.355778 GTGACACTTTTAGTCTTCCAATTCAG 58.644 38.462 0.00 0.00 36.94 3.02
36 37 6.018262 CGTGACACTTTTAGTCTTCCAATTCA 60.018 38.462 3.68 0.00 36.94 2.57
37 38 6.363473 CGTGACACTTTTAGTCTTCCAATTC 58.637 40.000 3.68 0.00 36.94 2.17
38 39 5.277828 GCGTGACACTTTTAGTCTTCCAATT 60.278 40.000 3.68 0.00 36.94 2.32
39 40 4.213482 GCGTGACACTTTTAGTCTTCCAAT 59.787 41.667 3.68 0.00 36.94 3.16
40 41 3.558418 GCGTGACACTTTTAGTCTTCCAA 59.442 43.478 3.68 0.00 36.94 3.53
41 42 3.128349 GCGTGACACTTTTAGTCTTCCA 58.872 45.455 3.68 0.00 36.94 3.53
42 43 3.128349 TGCGTGACACTTTTAGTCTTCC 58.872 45.455 3.68 0.00 36.94 3.46
43 44 4.049186 TCTGCGTGACACTTTTAGTCTTC 58.951 43.478 3.68 0.00 36.94 2.87
44 45 3.802685 GTCTGCGTGACACTTTTAGTCTT 59.197 43.478 3.68 0.00 44.73 3.01
45 46 3.381949 GTCTGCGTGACACTTTTAGTCT 58.618 45.455 3.68 0.00 44.73 3.24
46 47 3.772522 GTCTGCGTGACACTTTTAGTC 57.227 47.619 3.68 0.00 44.73 2.59
56 57 1.798223 TGCTTTATGTGTCTGCGTGAC 59.202 47.619 3.11 3.11 45.54 3.67
57 58 2.162319 TGCTTTATGTGTCTGCGTGA 57.838 45.000 0.00 0.00 0.00 4.35
58 59 2.416202 TCATGCTTTATGTGTCTGCGTG 59.584 45.455 0.00 0.00 40.69 5.34
59 60 2.698803 TCATGCTTTATGTGTCTGCGT 58.301 42.857 0.00 0.00 38.01 5.24
60 61 3.957671 ATCATGCTTTATGTGTCTGCG 57.042 42.857 0.00 0.00 38.01 5.18
61 62 4.142315 ACCAATCATGCTTTATGTGTCTGC 60.142 41.667 0.00 0.00 38.01 4.26
62 63 5.571784 ACCAATCATGCTTTATGTGTCTG 57.428 39.130 0.00 0.00 38.01 3.51
63 64 5.163723 CGAACCAATCATGCTTTATGTGTCT 60.164 40.000 0.00 0.00 38.01 3.41
64 65 5.030295 CGAACCAATCATGCTTTATGTGTC 58.970 41.667 0.00 0.00 38.01 3.67
65 66 4.699735 TCGAACCAATCATGCTTTATGTGT 59.300 37.500 0.00 0.00 38.01 3.72
66 67 5.233957 TCGAACCAATCATGCTTTATGTG 57.766 39.130 0.00 0.00 38.01 3.21
67 68 5.734220 GCATCGAACCAATCATGCTTTATGT 60.734 40.000 0.00 0.00 38.47 2.29
68 69 4.678287 GCATCGAACCAATCATGCTTTATG 59.322 41.667 0.00 0.00 38.47 1.90
69 70 4.261741 GGCATCGAACCAATCATGCTTTAT 60.262 41.667 3.08 0.00 39.96 1.40
70 71 3.066621 GGCATCGAACCAATCATGCTTTA 59.933 43.478 3.08 0.00 39.96 1.85
71 72 2.159198 GGCATCGAACCAATCATGCTTT 60.159 45.455 3.08 0.00 39.96 3.51
72 73 1.406539 GGCATCGAACCAATCATGCTT 59.593 47.619 3.08 0.00 39.96 3.91
73 74 1.027357 GGCATCGAACCAATCATGCT 58.973 50.000 3.08 0.00 39.96 3.79
74 75 0.740149 TGGCATCGAACCAATCATGC 59.260 50.000 8.01 1.52 39.64 4.06
75 76 3.507103 TTTGGCATCGAACCAATCATG 57.493 42.857 20.29 0.00 46.25 3.07
76 77 3.511146 ACTTTTGGCATCGAACCAATCAT 59.489 39.130 20.29 8.83 46.25 2.45
77 78 2.890311 ACTTTTGGCATCGAACCAATCA 59.110 40.909 20.29 11.54 46.25 2.57
78 79 3.575965 ACTTTTGGCATCGAACCAATC 57.424 42.857 20.29 0.00 46.25 2.67
79 80 3.320541 TCAACTTTTGGCATCGAACCAAT 59.679 39.130 20.29 6.70 46.25 3.16
80 81 2.690497 TCAACTTTTGGCATCGAACCAA 59.310 40.909 16.88 16.88 45.37 3.67
81 82 2.034053 GTCAACTTTTGGCATCGAACCA 59.966 45.455 6.45 6.45 34.79 3.67
82 83 2.034053 TGTCAACTTTTGGCATCGAACC 59.966 45.455 0.00 0.00 40.96 3.62
83 84 3.347958 TGTCAACTTTTGGCATCGAAC 57.652 42.857 0.00 0.00 40.96 3.95
90 91 2.237393 TTGGCATGTCAACTTTTGGC 57.763 45.000 9.09 0.00 35.37 4.52
91 92 6.128227 CCAAATATTGGCATGTCAACTTTTGG 60.128 38.462 32.61 32.61 45.17 3.28
92 93 6.833839 CCAAATATTGGCATGTCAACTTTTG 58.166 36.000 27.01 27.01 45.17 2.44
124 125 5.409214 CCAACCAATCACTAGCCAAAATTTG 59.591 40.000 0.00 0.00 0.00 2.32
125 126 5.550290 CCAACCAATCACTAGCCAAAATTT 58.450 37.500 0.00 0.00 0.00 1.82
126 127 4.563374 GCCAACCAATCACTAGCCAAAATT 60.563 41.667 0.00 0.00 0.00 1.82
127 128 3.055891 GCCAACCAATCACTAGCCAAAAT 60.056 43.478 0.00 0.00 0.00 1.82
128 129 2.298729 GCCAACCAATCACTAGCCAAAA 59.701 45.455 0.00 0.00 0.00 2.44
129 130 1.892474 GCCAACCAATCACTAGCCAAA 59.108 47.619 0.00 0.00 0.00 3.28
130 131 1.075374 AGCCAACCAATCACTAGCCAA 59.925 47.619 0.00 0.00 0.00 4.52
131 132 0.698238 AGCCAACCAATCACTAGCCA 59.302 50.000 0.00 0.00 0.00 4.75
132 133 2.289565 GTAGCCAACCAATCACTAGCC 58.710 52.381 0.00 0.00 0.00 3.93
145 146 4.787551 TGAGAAGAAAAGTTGGTAGCCAA 58.212 39.130 0.00 0.00 41.69 4.52
146 147 4.431416 TGAGAAGAAAAGTTGGTAGCCA 57.569 40.909 0.00 0.00 0.00 4.75
147 148 4.023107 GGTTGAGAAGAAAAGTTGGTAGCC 60.023 45.833 0.00 0.00 0.00 3.93
148 149 4.822350 AGGTTGAGAAGAAAAGTTGGTAGC 59.178 41.667 0.00 0.00 0.00 3.58
149 150 6.017852 GTGAGGTTGAGAAGAAAAGTTGGTAG 60.018 42.308 0.00 0.00 0.00 3.18
150 151 5.820947 GTGAGGTTGAGAAGAAAAGTTGGTA 59.179 40.000 0.00 0.00 0.00 3.25
151 152 4.640647 GTGAGGTTGAGAAGAAAAGTTGGT 59.359 41.667 0.00 0.00 0.00 3.67
152 153 4.640201 TGTGAGGTTGAGAAGAAAAGTTGG 59.360 41.667 0.00 0.00 0.00 3.77
153 154 5.818136 TGTGAGGTTGAGAAGAAAAGTTG 57.182 39.130 0.00 0.00 0.00 3.16
154 155 6.834168 TTTGTGAGGTTGAGAAGAAAAGTT 57.166 33.333 0.00 0.00 0.00 2.66
155 156 6.834168 TTTTGTGAGGTTGAGAAGAAAAGT 57.166 33.333 0.00 0.00 0.00 2.66
156 157 7.315890 ACTTTTTGTGAGGTTGAGAAGAAAAG 58.684 34.615 0.00 0.00 37.50 2.27
157 158 7.227049 ACTTTTTGTGAGGTTGAGAAGAAAA 57.773 32.000 0.00 0.00 0.00 2.29
158 159 6.834168 ACTTTTTGTGAGGTTGAGAAGAAA 57.166 33.333 0.00 0.00 0.00 2.52
159 160 6.620678 CAACTTTTTGTGAGGTTGAGAAGAA 58.379 36.000 0.00 0.00 40.74 2.52
160 161 5.393027 GCAACTTTTTGTGAGGTTGAGAAGA 60.393 40.000 8.55 0.00 40.74 2.87
161 162 4.800471 GCAACTTTTTGTGAGGTTGAGAAG 59.200 41.667 8.55 0.00 40.74 2.85
162 163 4.381505 GGCAACTTTTTGTGAGGTTGAGAA 60.382 41.667 8.55 0.00 40.74 2.87
163 164 3.130340 GGCAACTTTTTGTGAGGTTGAGA 59.870 43.478 8.55 0.00 40.74 3.27
164 165 3.119173 TGGCAACTTTTTGTGAGGTTGAG 60.119 43.478 8.55 0.00 40.74 3.02
165 166 2.828520 TGGCAACTTTTTGTGAGGTTGA 59.171 40.909 8.55 0.00 40.74 3.18
166 167 3.244033 TGGCAACTTTTTGTGAGGTTG 57.756 42.857 0.00 0.00 41.07 3.77
167 168 3.007398 TGTTGGCAACTTTTTGTGAGGTT 59.993 39.130 28.71 0.00 34.90 3.50
168 169 2.564947 TGTTGGCAACTTTTTGTGAGGT 59.435 40.909 28.71 0.00 34.90 3.85
169 170 3.244033 TGTTGGCAACTTTTTGTGAGG 57.756 42.857 28.71 0.00 34.90 3.86
170 171 5.447548 CCAAATGTTGGCAACTTTTTGTGAG 60.448 40.000 32.56 24.17 45.17 3.51
171 172 4.394300 CCAAATGTTGGCAACTTTTTGTGA 59.606 37.500 32.56 16.94 45.17 3.58
172 173 4.660105 CCAAATGTTGGCAACTTTTTGTG 58.340 39.130 32.56 25.34 45.17 3.33
173 174 4.961435 CCAAATGTTGGCAACTTTTTGT 57.039 36.364 32.56 19.32 45.17 2.83
185 186 6.020520 GCAAAATCAAAAGTTGCCAAATGTTG 60.021 34.615 1.39 1.39 41.41 3.33
186 187 6.035217 GCAAAATCAAAAGTTGCCAAATGTT 58.965 32.000 0.00 0.00 41.41 2.71
187 188 5.580661 GCAAAATCAAAAGTTGCCAAATGT 58.419 33.333 0.00 0.00 41.41 2.71
194 195 5.580661 ACATTTGGCAAAATCAAAAGTTGC 58.419 33.333 17.70 0.00 45.48 4.17
195 196 7.439204 CAACATTTGGCAAAATCAAAAGTTG 57.561 32.000 17.70 17.09 46.81 3.16
196 197 6.562518 CCAACATTTGGCAAAATCAAAAGTT 58.437 32.000 17.70 9.90 45.17 2.66
197 198 6.134040 CCAACATTTGGCAAAATCAAAAGT 57.866 33.333 17.70 4.62 45.17 2.66
241 242 1.271934 TGGTTTGATGCCGACAATTGG 59.728 47.619 10.83 0.00 0.00 3.16
242 243 2.721274 TGGTTTGATGCCGACAATTG 57.279 45.000 3.24 3.24 0.00 2.32
243 244 3.959535 ATTGGTTTGATGCCGACAATT 57.040 38.095 0.00 0.00 0.00 2.32
244 245 3.959535 AATTGGTTTGATGCCGACAAT 57.040 38.095 0.00 0.00 0.00 2.71
245 246 4.742417 CATAATTGGTTTGATGCCGACAA 58.258 39.130 0.00 0.00 0.00 3.18
246 247 3.428725 GCATAATTGGTTTGATGCCGACA 60.429 43.478 0.00 0.00 39.00 4.35
247 248 3.115554 GCATAATTGGTTTGATGCCGAC 58.884 45.455 0.00 0.00 39.00 4.79
248 249 3.023119 AGCATAATTGGTTTGATGCCGA 58.977 40.909 5.24 0.00 44.65 5.54
249 250 3.181488 TGAGCATAATTGGTTTGATGCCG 60.181 43.478 5.24 0.00 44.65 5.69
250 251 4.389890 TGAGCATAATTGGTTTGATGCC 57.610 40.909 5.24 0.00 44.65 4.40
251 252 6.154445 CCTATGAGCATAATTGGTTTGATGC 58.846 40.000 1.15 1.15 44.05 3.91
252 253 6.294899 CCCCTATGAGCATAATTGGTTTGATG 60.295 42.308 0.00 0.00 32.62 3.07
253 254 5.776716 CCCCTATGAGCATAATTGGTTTGAT 59.223 40.000 0.00 0.00 32.62 2.57
254 255 5.139727 CCCCTATGAGCATAATTGGTTTGA 58.860 41.667 0.00 0.00 32.62 2.69
255 256 4.262164 GCCCCTATGAGCATAATTGGTTTG 60.262 45.833 0.00 0.00 32.62 2.93
256 257 3.897505 GCCCCTATGAGCATAATTGGTTT 59.102 43.478 0.00 0.00 32.62 3.27
257 258 3.117169 TGCCCCTATGAGCATAATTGGTT 60.117 43.478 0.00 0.00 33.08 3.67
258 259 2.446666 TGCCCCTATGAGCATAATTGGT 59.553 45.455 0.00 0.00 33.08 3.67
259 260 3.159213 TGCCCCTATGAGCATAATTGG 57.841 47.619 0.00 0.00 33.08 3.16
260 261 5.733620 AATTGCCCCTATGAGCATAATTG 57.266 39.130 0.00 0.00 39.11 2.32
261 262 5.012354 CCAAATTGCCCCTATGAGCATAATT 59.988 40.000 0.00 0.00 39.11 1.40
262 263 4.529377 CCAAATTGCCCCTATGAGCATAAT 59.471 41.667 0.00 0.00 39.11 1.28
263 264 3.896888 CCAAATTGCCCCTATGAGCATAA 59.103 43.478 0.00 0.00 39.11 1.90
264 265 3.117169 ACCAAATTGCCCCTATGAGCATA 60.117 43.478 0.00 0.00 39.11 3.14
265 266 2.322658 CCAAATTGCCCCTATGAGCAT 58.677 47.619 0.00 0.00 39.11 3.79
266 267 1.006998 ACCAAATTGCCCCTATGAGCA 59.993 47.619 0.00 0.00 37.18 4.26
267 268 1.410153 CACCAAATTGCCCCTATGAGC 59.590 52.381 0.00 0.00 0.00 4.26
268 269 2.954318 CTCACCAAATTGCCCCTATGAG 59.046 50.000 0.00 0.00 0.00 2.90
269 270 2.949963 GCTCACCAAATTGCCCCTATGA 60.950 50.000 0.00 0.00 0.00 2.15
272 273 0.324275 GGCTCACCAAATTGCCCCTA 60.324 55.000 0.00 0.00 39.49 3.53
285 286 0.659957 GCATCTTCAATCCGGCTCAC 59.340 55.000 0.00 0.00 0.00 3.51
294 295 9.646522 ACACTTTATTATTAGGGCATCTTCAAT 57.353 29.630 0.00 0.00 0.00 2.57
332 333 3.807553 TGCCTCAAATGATCGCTTCATA 58.192 40.909 1.75 0.00 44.51 2.15
334 335 2.112380 TGCCTCAAATGATCGCTTCA 57.888 45.000 4.80 0.00 39.12 3.02
382 383 0.104855 TACGGTGAGATGCATCTGCC 59.895 55.000 33.33 28.78 41.18 4.85
431 432 3.215671 AGAGCCGCCTCTCAAGTAT 57.784 52.632 0.00 0.00 45.21 2.12
482 490 1.178534 TTGCTTTTCTCCCGGGCTTG 61.179 55.000 18.49 8.76 0.00 4.01
493 501 4.105486 GGACACAGAAGTTGTTGCTTTTC 58.895 43.478 0.00 0.00 38.16 2.29
498 506 0.307760 CGGGACACAGAAGTTGTTGC 59.692 55.000 0.00 0.00 38.16 4.17
499 507 0.944386 CCGGGACACAGAAGTTGTTG 59.056 55.000 0.00 0.00 38.16 3.33
501 509 1.052124 TCCCGGGACACAGAAGTTGT 61.052 55.000 22.63 0.00 41.94 3.32
517 525 2.903855 TCGGATACTCGGCGTCCC 60.904 66.667 6.85 1.33 0.00 4.46
577 585 7.950512 ACAAATTTCATATGCCATATTTCCGA 58.049 30.769 0.00 0.00 0.00 4.55
584 593 4.320129 CGGCGACAAATTTCATATGCCATA 60.320 41.667 0.00 0.00 41.25 2.74
906 915 2.742372 GGGTAGCACAGTGGCACG 60.742 66.667 12.71 9.83 35.83 5.34
999 1012 3.650950 AGCAGCACCCGGTCCATT 61.651 61.111 0.00 0.00 0.00 3.16
1274 1287 1.000955 GGACGAAGCTGGAGAAGTTGA 59.999 52.381 0.00 0.00 0.00 3.18
1296 1309 1.269723 CTCACGTAGGTGTTGAGCTGA 59.730 52.381 14.78 0.00 44.68 4.26
1318 1331 1.765657 GCAGGCCAGGAGAGGAGAT 60.766 63.158 5.01 0.00 0.00 2.75
1321 1334 3.991924 GAGGCAGGCCAGGAGAGGA 62.992 68.421 13.63 0.00 38.92 3.71
1331 1344 3.478274 CCAGAGGAGGAGGCAGGC 61.478 72.222 0.00 0.00 0.00 4.85
1332 1345 1.614824 AACCAGAGGAGGAGGCAGG 60.615 63.158 0.00 0.00 0.00 4.85
1333 1346 1.601171 CAACCAGAGGAGGAGGCAG 59.399 63.158 0.00 0.00 0.00 4.85
1334 1347 2.596851 GCAACCAGAGGAGGAGGCA 61.597 63.158 0.00 0.00 33.57 4.75
1335 1348 2.270527 GCAACCAGAGGAGGAGGC 59.729 66.667 0.00 0.00 0.00 4.70
1337 1350 1.118838 CTAGGCAACCAGAGGAGGAG 58.881 60.000 0.00 0.00 37.17 3.69
1338 1351 0.413832 ACTAGGCAACCAGAGGAGGA 59.586 55.000 0.00 0.00 37.17 3.71
1339 1352 2.160721 TACTAGGCAACCAGAGGAGG 57.839 55.000 0.00 0.00 37.17 4.30
1340 1353 2.432510 CCTTACTAGGCAACCAGAGGAG 59.567 54.545 0.00 0.00 33.99 3.69
1341 1354 2.225547 ACCTTACTAGGCAACCAGAGGA 60.226 50.000 0.00 0.00 46.22 3.71
1342 1355 2.188817 ACCTTACTAGGCAACCAGAGG 58.811 52.381 0.00 0.00 46.22 3.69
1343 1356 3.983044 AACCTTACTAGGCAACCAGAG 57.017 47.619 0.00 0.00 46.22 3.35
1344 1357 4.422984 AGTAACCTTACTAGGCAACCAGA 58.577 43.478 0.00 0.00 46.22 3.86
1345 1358 4.222145 TGAGTAACCTTACTAGGCAACCAG 59.778 45.833 0.00 0.00 46.22 4.00
1346 1359 4.161876 TGAGTAACCTTACTAGGCAACCA 58.838 43.478 0.00 0.00 46.22 3.67
1347 1360 4.222366 ACTGAGTAACCTTACTAGGCAACC 59.778 45.833 0.00 0.00 46.22 3.77
1348 1361 5.047519 TGACTGAGTAACCTTACTAGGCAAC 60.048 44.000 0.00 0.00 46.22 4.17
1349 1362 5.081728 TGACTGAGTAACCTTACTAGGCAA 58.918 41.667 0.00 0.00 46.22 4.52
1350 1363 4.669700 TGACTGAGTAACCTTACTAGGCA 58.330 43.478 0.00 2.96 46.22 4.75
1351 1364 5.855740 ATGACTGAGTAACCTTACTAGGC 57.144 43.478 0.00 0.75 46.22 3.93
1352 1365 8.522542 AGTAATGACTGAGTAACCTTACTAGG 57.477 38.462 0.00 0.00 43.64 3.02
1353 1366 9.790389 CAAGTAATGACTGAGTAACCTTACTAG 57.210 37.037 8.20 0.00 38.37 2.57
1354 1367 9.305555 ACAAGTAATGACTGAGTAACCTTACTA 57.694 33.333 8.20 0.00 38.37 1.82
1355 1368 8.191534 ACAAGTAATGACTGAGTAACCTTACT 57.808 34.615 0.00 0.00 39.88 2.24
1356 1369 8.828688 AACAAGTAATGACTGAGTAACCTTAC 57.171 34.615 0.00 0.00 35.52 2.34
1357 1370 8.644216 TGAACAAGTAATGACTGAGTAACCTTA 58.356 33.333 0.00 0.00 35.52 2.69
1358 1371 7.506114 TGAACAAGTAATGACTGAGTAACCTT 58.494 34.615 0.00 0.00 35.52 3.50
1359 1372 7.062749 TGAACAAGTAATGACTGAGTAACCT 57.937 36.000 0.00 0.00 35.52 3.50
1360 1373 6.929606 ACTGAACAAGTAATGACTGAGTAACC 59.070 38.462 0.00 0.00 37.36 2.85
1361 1374 7.948278 ACTGAACAAGTAATGACTGAGTAAC 57.052 36.000 0.00 0.00 37.36 2.50
1369 1382 6.708949 TGGAGGTTAACTGAACAAGTAATGAC 59.291 38.462 5.42 0.00 38.56 3.06
1403 1416 0.801836 GCAACAACACAAGCAAGCGT 60.802 50.000 0.00 0.00 0.00 5.07
1426 1439 7.446931 TCTTGGTTCTACAAATGCAAGATTGTA 59.553 33.333 17.08 17.08 40.14 2.41
1427 1440 6.265196 TCTTGGTTCTACAAATGCAAGATTGT 59.735 34.615 16.74 16.74 42.16 2.71
1465 1478 0.869454 GGTCATCTCTTGCTCGAGCG 60.869 60.000 30.75 18.54 45.83 5.03
1469 1482 2.099141 TTTGGGTCATCTCTTGCTCG 57.901 50.000 0.00 0.00 0.00 5.03
1483 1496 8.365060 TGCCCTGATATTATATCATTTTTGGG 57.635 34.615 22.24 22.24 33.86 4.12
1494 1507 6.015519 GCACCAAATGTTGCCCTGATATTATA 60.016 38.462 0.00 0.00 0.00 0.98
1497 1510 3.118665 GCACCAAATGTTGCCCTGATATT 60.119 43.478 0.00 0.00 0.00 1.28
1500 1513 0.609662 GCACCAAATGTTGCCCTGAT 59.390 50.000 0.00 0.00 0.00 2.90
1501 1514 0.469705 AGCACCAAATGTTGCCCTGA 60.470 50.000 0.00 0.00 0.00 3.86
1502 1515 0.037975 GAGCACCAAATGTTGCCCTG 60.038 55.000 0.00 0.00 0.00 4.45
1504 1517 1.080569 CGAGCACCAAATGTTGCCC 60.081 57.895 0.00 0.00 0.00 5.36
1515 1533 1.792949 CACAGTTGTAAGACGAGCACC 59.207 52.381 0.00 0.00 0.00 5.01
1631 1660 8.709646 ACTCTTCTTTCATAATTCGTACACAAC 58.290 33.333 0.00 0.00 0.00 3.32
1632 1661 8.827177 ACTCTTCTTTCATAATTCGTACACAA 57.173 30.769 0.00 0.00 0.00 3.33
1635 1664 9.917129 TGTTACTCTTCTTTCATAATTCGTACA 57.083 29.630 0.00 0.00 0.00 2.90
1671 1751 3.253677 GCTTACCGCTAGATGCTAAGAGA 59.746 47.826 0.00 0.00 40.11 3.10
1717 1797 1.616159 AAAACATGCCGGCAACTAGT 58.384 45.000 36.33 25.34 0.00 2.57
1734 1814 3.393800 CCAACACCAACACACACAAAAA 58.606 40.909 0.00 0.00 0.00 1.94
1735 1815 2.868044 GCCAACACCAACACACACAAAA 60.868 45.455 0.00 0.00 0.00 2.44
1736 1816 1.337260 GCCAACACCAACACACACAAA 60.337 47.619 0.00 0.00 0.00 2.83
1737 1817 0.244994 GCCAACACCAACACACACAA 59.755 50.000 0.00 0.00 0.00 3.33
1738 1818 0.610509 AGCCAACACCAACACACACA 60.611 50.000 0.00 0.00 0.00 3.72
1739 1819 0.179140 CAGCCAACACCAACACACAC 60.179 55.000 0.00 0.00 0.00 3.82
1740 1820 0.610509 ACAGCCAACACCAACACACA 60.611 50.000 0.00 0.00 0.00 3.72
1781 1861 5.880332 AGCGGATACAAAACACAATGAGTAT 59.120 36.000 0.00 0.00 0.00 2.12
1783 1863 4.072131 AGCGGATACAAAACACAATGAGT 58.928 39.130 0.00 0.00 0.00 3.41
1803 1883 7.823149 ATTAGTTCAAAATGAAGCATCAAGC 57.177 32.000 0.00 0.00 37.00 4.01
1822 1902 6.478129 TCGACAAAGGGTGGATTTTATTAGT 58.522 36.000 0.00 0.00 28.37 2.24
1852 1932 5.643348 CAGTAACATAGTTCACTGCCATGAA 59.357 40.000 0.00 0.00 36.23 2.57
1853 1933 5.178061 CAGTAACATAGTTCACTGCCATGA 58.822 41.667 0.00 0.00 32.72 3.07
1854 1934 4.937620 ACAGTAACATAGTTCACTGCCATG 59.062 41.667 13.97 0.00 41.67 3.66
2004 2089 8.761689 AGTAGGAGTACTAGTACCATAGCTATC 58.238 40.741 25.97 15.36 37.76 2.08
2045 2133 6.164876 CAGATAGTGGCAGAGATATTGAAGG 58.835 44.000 0.00 0.00 0.00 3.46
2104 2193 1.347062 GCCCCAACCTCATTTTTCCA 58.653 50.000 0.00 0.00 0.00 3.53
2183 2272 1.556911 TCCCAGCATCTCCTTGTTCTC 59.443 52.381 0.00 0.00 0.00 2.87
2253 2344 6.049790 ACACAGTAAGAAGTTGGAGAAAGAC 58.950 40.000 0.00 0.00 0.00 3.01
2278 2369 2.101415 CGGTGTCTTGATCCATCTAGCA 59.899 50.000 0.00 0.00 31.18 3.49
2437 2528 3.941483 ACTAGCATGGCATACTTCACAAC 59.059 43.478 5.37 0.00 0.00 3.32
2438 2529 4.220693 ACTAGCATGGCATACTTCACAA 57.779 40.909 5.37 0.00 0.00 3.33
2455 2546 2.551459 ACAAGCAGCAAAGCTCAACTAG 59.449 45.455 0.00 0.00 45.89 2.57
2482 2573 3.397482 ACTGCAGTTAGCTCAAGTTCAG 58.603 45.455 15.25 0.00 45.94 3.02
2686 2777 1.252904 CCAAGGGCCTGATGTTGTGG 61.253 60.000 6.92 5.06 0.00 4.17
2721 2812 1.002624 GTCCAATCCGAACTGGCCA 60.003 57.895 4.71 4.71 37.80 5.36
2736 2827 8.768591 GCTTTAGCACTTCGATTTCTTCGTCC 62.769 46.154 0.00 0.00 43.83 4.79
2783 2874 1.202818 GCCTCAGTTTCACCACCTCTT 60.203 52.381 0.00 0.00 0.00 2.85
2928 3019 3.490439 TCTTGTTGCTGGATCAACTGA 57.510 42.857 7.93 4.28 44.83 3.41
2961 3052 3.057104 TGTTCGAATAAGCGTCCTCAAGA 60.057 43.478 0.00 0.00 0.00 3.02
2964 3055 3.057104 TCTTGTTCGAATAAGCGTCCTCA 60.057 43.478 24.92 7.61 0.00 3.86
2972 3063 4.160626 ACCTCCTCCTCTTGTTCGAATAAG 59.839 45.833 24.07 24.07 0.00 1.73
2976 3067 1.893801 GACCTCCTCCTCTTGTTCGAA 59.106 52.381 0.00 0.00 0.00 3.71
2977 3068 1.546961 GACCTCCTCCTCTTGTTCGA 58.453 55.000 0.00 0.00 0.00 3.71
2981 3072 1.872773 GATGGACCTCCTCCTCTTGT 58.127 55.000 0.00 0.00 40.26 3.16
2982 3073 0.749649 CGATGGACCTCCTCCTCTTG 59.250 60.000 0.00 0.00 40.26 3.02
3031 3122 1.375268 GTGGCTCACTCTGACTGGC 60.375 63.158 0.00 0.00 0.00 4.85
3140 3231 1.258445 ATCCCGACCACCTCTGTCAC 61.258 60.000 0.00 0.00 32.91 3.67
3157 3248 1.817099 CCTCACCGCAGCCTTGATC 60.817 63.158 0.00 0.00 0.00 2.92
3180 3271 0.962489 CCCAGAAGTCGTCAGTCAGT 59.038 55.000 0.00 0.00 0.00 3.41
3241 3332 2.741145 TCTCCTCCTTTCCAGCTCTAC 58.259 52.381 0.00 0.00 0.00 2.59
3289 3380 5.813672 TCGCTGTTACTTAAATGACCCATAC 59.186 40.000 0.00 0.00 0.00 2.39
3300 3391 7.279313 GGTAGATTTTGGATCGCTGTTACTTAA 59.721 37.037 0.00 0.00 0.00 1.85
3456 3547 8.148351 TGAGAATCCAGGGATAGTTTTTATACG 58.852 37.037 0.32 0.00 33.97 3.06
3464 3555 3.580458 CCGATGAGAATCCAGGGATAGTT 59.420 47.826 0.32 0.00 33.97 2.24
3468 3559 0.689623 GCCGATGAGAATCCAGGGAT 59.310 55.000 0.00 0.00 36.23 3.85
3475 3566 5.112686 AGTAGAAAACTGCCGATGAGAATC 58.887 41.667 0.00 0.00 36.93 2.52
3486 3577 7.118971 ACAAAGATCATCAGAGTAGAAAACTGC 59.881 37.037 0.00 0.00 39.07 4.40
3494 3585 9.462174 GAGTATGAACAAAGATCATCAGAGTAG 57.538 37.037 0.00 0.00 38.44 2.57
3510 3601 1.065926 CAGCAGGCCTGAGTATGAACA 60.066 52.381 37.21 0.00 44.64 3.18
3542 3637 5.461526 GGTTGCAGATTCTAAACCAAGAAC 58.538 41.667 18.82 0.00 41.44 3.01
3547 3642 3.410631 TCGGTTGCAGATTCTAAACCA 57.589 42.857 21.52 11.60 41.81 3.67
3553 3648 0.326264 AGGCTTCGGTTGCAGATTCT 59.674 50.000 0.00 0.00 0.00 2.40
3575 3670 2.146724 ACACTAGGCACACCAGGCA 61.147 57.895 0.00 0.00 39.06 4.75
3577 3672 1.672356 GCACACTAGGCACACCAGG 60.672 63.158 0.00 0.00 39.06 4.45
3578 3673 1.672356 GGCACACTAGGCACACCAG 60.672 63.158 0.00 0.00 39.06 4.00
3580 3675 0.108138 CTAGGCACACTAGGCACACC 60.108 60.000 0.00 0.00 44.50 4.16
3623 3718 9.388506 GTAGAGCTATCAATGCAATGGTTATAT 57.611 33.333 1.05 0.00 0.00 0.86
3635 3730 6.703165 TGCAACATACAGTAGAGCTATCAATG 59.297 38.462 0.00 0.00 0.00 2.82
3643 3738 3.589988 ACACTGCAACATACAGTAGAGC 58.410 45.455 0.00 0.00 46.44 4.09
3695 3790 4.796110 ATTATGCCACATACCAGGAACT 57.204 40.909 0.00 0.00 43.88 3.01
3701 3796 5.301551 CAGCCTTTTATTATGCCACATACCA 59.698 40.000 0.00 0.00 0.00 3.25
3703 3798 6.263168 AGACAGCCTTTTATTATGCCACATAC 59.737 38.462 0.00 0.00 0.00 2.39
3705 3800 5.203528 AGACAGCCTTTTATTATGCCACAT 58.796 37.500 0.00 0.00 0.00 3.21
3706 3801 4.599041 AGACAGCCTTTTATTATGCCACA 58.401 39.130 0.00 0.00 0.00 4.17
3707 3802 4.884164 AGAGACAGCCTTTTATTATGCCAC 59.116 41.667 0.00 0.00 0.00 5.01
3709 3804 7.568199 TTAAGAGACAGCCTTTTATTATGCC 57.432 36.000 0.00 0.00 0.00 4.40
3710 3805 9.670719 GAATTAAGAGACAGCCTTTTATTATGC 57.329 33.333 0.00 0.00 0.00 3.14
3716 3811 9.314321 CGATAAGAATTAAGAGACAGCCTTTTA 57.686 33.333 0.00 0.00 32.17 1.52
3717 3812 8.041323 TCGATAAGAATTAAGAGACAGCCTTTT 58.959 33.333 0.00 0.00 32.17 2.27
3719 3814 6.981559 GTCGATAAGAATTAAGAGACAGCCTT 59.018 38.462 0.00 0.00 34.61 4.35
3720 3815 6.096987 TGTCGATAAGAATTAAGAGACAGCCT 59.903 38.462 0.00 0.00 37.36 4.58
3721 3816 6.273825 TGTCGATAAGAATTAAGAGACAGCC 58.726 40.000 0.00 0.00 37.36 4.85
3757 3857 3.629398 GGGCATGAACTAAGAACATCAGG 59.371 47.826 0.00 0.00 0.00 3.86
3760 3860 2.614057 CCGGGCATGAACTAAGAACATC 59.386 50.000 0.00 0.00 0.00 3.06
3761 3861 2.643551 CCGGGCATGAACTAAGAACAT 58.356 47.619 0.00 0.00 0.00 2.71
3764 3864 0.393808 GCCCGGGCATGAACTAAGAA 60.394 55.000 40.73 0.00 41.49 2.52
3780 3880 1.103398 CATTCCATTCGGACAGGCCC 61.103 60.000 0.00 0.00 42.67 5.80
3784 3884 2.826428 ACGATCATTCCATTCGGACAG 58.174 47.619 0.00 0.00 42.67 3.51
3785 3885 2.979814 ACGATCATTCCATTCGGACA 57.020 45.000 0.00 0.00 42.67 4.02
3786 3886 3.871594 AGAAACGATCATTCCATTCGGAC 59.128 43.478 0.00 0.00 42.67 4.79
3787 3887 4.137116 AGAAACGATCATTCCATTCGGA 57.863 40.909 0.00 0.00 40.60 4.55
3788 3888 4.496341 CCAAGAAACGATCATTCCATTCGG 60.496 45.833 0.00 0.00 37.20 4.30
3789 3889 4.094887 ACCAAGAAACGATCATTCCATTCG 59.905 41.667 0.00 0.00 38.76 3.34
3790 3890 5.567138 ACCAAGAAACGATCATTCCATTC 57.433 39.130 0.00 0.00 0.00 2.67
3792 3892 5.982890 AAACCAAGAAACGATCATTCCAT 57.017 34.783 0.00 0.00 0.00 3.41
3793 3893 5.782893 AAAACCAAGAAACGATCATTCCA 57.217 34.783 0.00 0.00 0.00 3.53
3794 3894 6.212955 TCAAAAACCAAGAAACGATCATTCC 58.787 36.000 0.00 0.00 0.00 3.01
3802 3902 5.862811 TGCAATTTCAAAAACCAAGAAACG 58.137 33.333 0.00 0.00 34.47 3.60
3803 3903 7.271008 CAGTTGCAATTTCAAAAACCAAGAAAC 59.729 33.333 0.59 0.00 34.47 2.78
3816 3916 5.521010 CAGAAAAGCTTCAGTTGCAATTTCA 59.479 36.000 16.13 0.00 39.11 2.69
3820 3920 3.387397 GCAGAAAAGCTTCAGTTGCAAT 58.613 40.909 0.59 0.00 32.95 3.56
3826 3926 1.202698 ACCTCGCAGAAAAGCTTCAGT 60.203 47.619 0.00 0.00 34.09 3.41
3871 3971 2.736144 TTAGTTCGTCTGGCATTCGT 57.264 45.000 10.29 0.00 0.00 3.85
3872 3972 2.222819 GCTTTAGTTCGTCTGGCATTCG 60.223 50.000 5.35 5.35 0.00 3.34
3876 3976 1.202592 TGTGCTTTAGTTCGTCTGGCA 60.203 47.619 0.00 0.00 0.00 4.92
3879 3979 4.378459 GGGAATTGTGCTTTAGTTCGTCTG 60.378 45.833 0.00 0.00 0.00 3.51
3884 3984 4.747810 CATGGGGAATTGTGCTTTAGTTC 58.252 43.478 0.00 0.00 0.00 3.01
3891 3991 2.457813 TATGCATGGGGAATTGTGCT 57.542 45.000 10.16 0.00 0.00 4.40
3902 4002 4.698780 CCTCTTATCCACACATATGCATGG 59.301 45.833 10.16 16.47 36.39 3.66
3904 4004 4.598807 TCCCTCTTATCCACACATATGCAT 59.401 41.667 3.79 3.79 0.00 3.96
3912 4012 3.610911 CAAGGTTCCCTCTTATCCACAC 58.389 50.000 0.00 0.00 30.89 3.82
3920 4020 3.575805 TCATTTTGCAAGGTTCCCTCTT 58.424 40.909 0.00 0.00 30.89 2.85
3933 4033 5.695816 TCAGGTTTAAACAGCATCATTTTGC 59.304 36.000 19.57 0.00 43.09 3.68
3936 4036 8.907222 AATTTCAGGTTTAAACAGCATCATTT 57.093 26.923 19.57 1.68 0.00 2.32
3950 4050 9.106070 GTCCGAGTATATGTAAATTTCAGGTTT 57.894 33.333 0.00 0.00 0.00 3.27
3971 4071 4.497291 AATGGTATTTTGGCTAGTCCGA 57.503 40.909 0.00 0.00 37.80 4.55
4183 4283 6.601613 ACGGCTTCATTTAATAATCCACTTCA 59.398 34.615 0.00 0.00 0.00 3.02
4215 4315 9.571816 TTCCTTCAATTTGCATTTTTCCTAAAT 57.428 25.926 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.