Multiple sequence alignment - TraesCS4D01G275300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G275300 chr4D 100.000 7089 0 0 1 7089 446136469 446143557 0.000000e+00 13092.0
1 TraesCS4D01G275300 chr4A 88.286 5771 308 159 65 5643 21221279 21215685 0.000000e+00 6573.0
2 TraesCS4D01G275300 chr4A 88.176 1387 81 50 5710 7089 21215648 21214338 0.000000e+00 1576.0
3 TraesCS4D01G275300 chr4B 89.528 3810 178 91 86 3787 558043397 558047093 0.000000e+00 4621.0
4 TraesCS4D01G275300 chr4B 92.938 1416 57 30 4266 5668 558047701 558049086 0.000000e+00 2021.0
5 TraesCS4D01G275300 chr4B 92.744 634 34 6 5700 6331 558049085 558049708 0.000000e+00 905.0
6 TraesCS4D01G275300 chr4B 89.883 514 25 14 3784 4278 558047134 558047639 2.790000e-178 636.0
7 TraesCS4D01G275300 chr4B 96.567 233 8 0 6857 7089 558050198 558050430 3.100000e-103 387.0
8 TraesCS4D01G275300 chr4B 82.432 444 49 20 6372 6812 558049781 558050198 1.880000e-95 361.0
9 TraesCS4D01G275300 chr4B 81.250 160 30 0 1969 2128 535047259 535047418 5.770000e-26 130.0
10 TraesCS4D01G275300 chr1D 85.427 398 55 3 5248 5643 138199225 138198829 1.840000e-110 411.0
11 TraesCS4D01G275300 chr1D 87.097 124 16 0 6966 7089 176353378 176353255 2.670000e-29 141.0
12 TraesCS4D01G275300 chr1B 85.037 401 54 5 5248 5643 213595236 213595635 3.080000e-108 403.0
13 TraesCS4D01G275300 chr1B 85.484 124 18 0 6966 7089 242668432 242668309 5.770000e-26 130.0
14 TraesCS4D01G275300 chr5D 81.265 411 41 18 6655 7032 432930277 432929870 4.160000e-77 300.0
15 TraesCS4D01G275300 chrUn 84.825 257 25 10 5397 5643 27575680 27575428 5.490000e-61 246.0
16 TraesCS4D01G275300 chr5B 90.625 160 13 2 6678 6837 526256091 526255934 2.000000e-50 211.0
17 TraesCS4D01G275300 chr5B 85.965 114 13 3 6834 6946 526255911 526255800 1.250000e-22 119.0
18 TraesCS4D01G275300 chr6D 85.165 182 26 1 1984 2165 381524778 381524598 1.210000e-42 185.0
19 TraesCS4D01G275300 chr6A 84.615 182 27 1 1984 2165 522743357 522743177 5.650000e-41 180.0
20 TraesCS4D01G275300 chr2A 81.304 230 35 7 1468 1693 734887679 734887904 5.650000e-41 180.0
21 TraesCS4D01G275300 chr2B 81.223 229 36 5 1470 1694 731890691 731890916 2.030000e-40 178.0
22 TraesCS4D01G275300 chr2B 81.325 166 24 6 1107 1266 175532044 175532208 2.080000e-25 128.0
23 TraesCS4D01G275300 chr3D 80.833 240 33 9 1115 1349 397213427 397213196 7.310000e-40 176.0
24 TraesCS4D01G275300 chr3B 80.833 240 33 9 1115 1349 523156901 523156670 7.310000e-40 176.0
25 TraesCS4D01G275300 chr3A 80.833 240 33 9 1115 1349 516806112 516805881 7.310000e-40 176.0
26 TraesCS4D01G275300 chr2D 81.567 217 34 5 1470 1683 601597298 601597511 2.630000e-39 174.0
27 TraesCS4D01G275300 chr2D 80.952 168 18 11 1107 1266 179348246 179348085 3.470000e-23 121.0
28 TraesCS4D01G275300 chr2D 76.166 193 31 12 1112 1298 601596671 601596854 3.520000e-13 87.9
29 TraesCS4D01G275300 chr6B 81.319 182 33 1 1984 2165 570140291 570140111 5.730000e-31 147.0
30 TraesCS4D01G275300 chr1A 82.036 167 21 8 1107 1266 525189144 525189308 4.460000e-27 134.0
31 TraesCS4D01G275300 chr1A 85.484 124 18 0 6966 7089 232074548 232074425 5.770000e-26 130.0
32 TraesCS4D01G275300 chr7B 80.952 168 19 10 1107 1266 648148400 648148562 3.470000e-23 121.0
33 TraesCS4D01G275300 chr7B 78.916 166 33 2 1982 2146 59281782 59281618 2.090000e-20 111.0
34 TraesCS4D01G275300 chr7A 93.333 60 4 0 1293 1352 53907075 53907134 9.790000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G275300 chr4D 446136469 446143557 7088 False 13092.0 13092 100.000 1 7089 1 chr4D.!!$F1 7088
1 TraesCS4D01G275300 chr4A 21214338 21221279 6941 True 4074.5 6573 88.231 65 7089 2 chr4A.!!$R1 7024
2 TraesCS4D01G275300 chr4B 558043397 558050430 7033 False 1488.5 4621 90.682 86 7089 6 chr4B.!!$F2 7003

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.108804 CTGTGGGCAGTACACGTAGG 60.109 60.0 0.00 0.0 41.64 3.18 F
936 993 0.449786 TTCCAAACACAGCACACACG 59.550 50.0 0.00 0.0 0.00 4.49 F
1393 1454 0.669932 TGTTGCCATTGCCGATTTGC 60.670 50.0 0.00 0.0 36.33 3.68 F
2613 2801 0.035881 CATGCCGATGCCTATGTCCT 59.964 55.0 0.00 0.0 36.33 3.85 F
3374 3605 0.039256 CATTTGTGCCCGGTGAAGTG 60.039 55.0 0.00 0.0 0.00 3.16 F
4667 5110 0.098200 TCGTTCCACGCTATGTCGAG 59.902 55.0 0.00 0.0 42.21 4.04 F
5559 6019 0.030908 GGTGGATCGACGAGGATGAC 59.969 60.0 3.01 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1808 1875 0.249031 GTGCCACTGTGCTTTTGGTC 60.249 55.0 1.29 0.00 32.50 4.02 R
2341 2508 0.109458 GACAGACATACGCACGGTGA 60.109 55.0 13.29 0.00 0.00 4.02 R
2992 3186 0.041663 TTGTCACGCGCAAGTTAAGC 60.042 50.0 5.73 0.00 41.68 3.09 R
4002 4339 0.107066 TCTGGTCCGATGCATGCATT 60.107 50.0 32.60 17.42 36.70 3.56 R
4790 5233 0.036388 GTGATGAGGCCGGTCTTCAA 60.036 55.0 11.49 0.00 33.69 2.69 R
5698 6181 0.036010 AGTTTCAGATCCAGTGCCCG 60.036 55.0 0.00 0.00 0.00 6.13 R
6618 7147 0.109532 TGTGATTCCGTTGCCCTTCA 59.890 50.0 0.00 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.962884 ATTTTCATTAAAGAAAACCAGCAAGT 57.037 26.923 18.02 0.92 46.63 3.16
27 28 8.865590 TTTCATTAAAGAAAACCAGCAAGTAC 57.134 30.769 3.47 0.00 34.77 2.73
28 29 7.817418 TCATTAAAGAAAACCAGCAAGTACT 57.183 32.000 0.00 0.00 0.00 2.73
29 30 8.232913 TCATTAAAGAAAACCAGCAAGTACTT 57.767 30.769 1.12 1.12 0.00 2.24
30 31 8.349983 TCATTAAAGAAAACCAGCAAGTACTTC 58.650 33.333 4.77 1.12 0.00 3.01
31 32 4.813296 AAGAAAACCAGCAAGTACTTCG 57.187 40.909 4.77 3.03 0.00 3.79
32 33 4.067972 AGAAAACCAGCAAGTACTTCGA 57.932 40.909 4.77 0.00 0.00 3.71
33 34 4.058817 AGAAAACCAGCAAGTACTTCGAG 58.941 43.478 4.77 0.00 0.00 4.04
34 35 1.797025 AACCAGCAAGTACTTCGAGC 58.203 50.000 4.77 6.73 0.00 5.03
35 36 0.969894 ACCAGCAAGTACTTCGAGCT 59.030 50.000 11.97 11.97 35.63 4.09
36 37 2.168496 ACCAGCAAGTACTTCGAGCTA 58.832 47.619 16.12 0.00 33.59 3.32
37 38 2.094649 ACCAGCAAGTACTTCGAGCTAC 60.095 50.000 16.12 0.00 33.59 3.58
38 39 2.094700 CCAGCAAGTACTTCGAGCTACA 60.095 50.000 16.12 0.00 33.59 2.74
39 40 3.575630 CAGCAAGTACTTCGAGCTACAA 58.424 45.455 16.12 0.00 33.59 2.41
40 41 3.610242 CAGCAAGTACTTCGAGCTACAAG 59.390 47.826 16.12 3.68 33.59 3.16
41 42 2.345942 GCAAGTACTTCGAGCTACAAGC 59.654 50.000 4.77 0.00 42.84 4.01
42 43 3.575630 CAAGTACTTCGAGCTACAAGCA 58.424 45.455 4.77 0.00 45.56 3.91
43 44 3.936372 AGTACTTCGAGCTACAAGCAA 57.064 42.857 1.22 0.00 45.56 3.91
44 45 3.576648 AGTACTTCGAGCTACAAGCAAC 58.423 45.455 1.22 3.93 45.56 4.17
45 46 1.419374 ACTTCGAGCTACAAGCAACG 58.581 50.000 1.22 6.89 45.56 4.10
46 47 1.269621 ACTTCGAGCTACAAGCAACGT 60.270 47.619 14.42 0.00 45.56 3.99
47 48 1.792949 CTTCGAGCTACAAGCAACGTT 59.207 47.619 14.42 0.00 45.56 3.99
48 49 2.710220 TCGAGCTACAAGCAACGTTA 57.290 45.000 0.00 0.00 45.56 3.18
49 50 2.322161 TCGAGCTACAAGCAACGTTAC 58.678 47.619 0.00 0.00 45.56 2.50
50 51 1.389106 CGAGCTACAAGCAACGTTACC 59.611 52.381 0.00 0.00 45.56 2.85
51 52 1.730612 GAGCTACAAGCAACGTTACCC 59.269 52.381 0.00 0.00 45.56 3.69
52 53 0.800631 GCTACAAGCAACGTTACCCC 59.199 55.000 0.00 0.00 41.89 4.95
53 54 1.878948 GCTACAAGCAACGTTACCCCA 60.879 52.381 0.00 0.00 41.89 4.96
54 55 2.706890 CTACAAGCAACGTTACCCCAT 58.293 47.619 0.00 0.00 0.00 4.00
55 56 2.863132 ACAAGCAACGTTACCCCATA 57.137 45.000 0.00 0.00 0.00 2.74
56 57 3.143211 ACAAGCAACGTTACCCCATAA 57.857 42.857 0.00 0.00 0.00 1.90
57 58 2.815503 ACAAGCAACGTTACCCCATAAC 59.184 45.455 0.00 0.00 39.98 1.89
58 59 2.118313 AGCAACGTTACCCCATAACC 57.882 50.000 0.00 0.00 40.22 2.85
59 60 1.351683 AGCAACGTTACCCCATAACCA 59.648 47.619 0.00 0.00 40.22 3.67
60 61 1.741145 GCAACGTTACCCCATAACCAG 59.259 52.381 0.00 0.00 40.22 4.00
61 62 2.361789 CAACGTTACCCCATAACCAGG 58.638 52.381 0.00 0.00 40.22 4.45
62 63 1.955451 ACGTTACCCCATAACCAGGA 58.045 50.000 0.00 0.00 40.22 3.86
63 64 2.268107 ACGTTACCCCATAACCAGGAA 58.732 47.619 0.00 0.00 40.22 3.36
82 83 3.418675 CTGTGGGCAGTACACGTAG 57.581 57.895 0.00 0.00 41.64 3.51
83 84 0.108804 CTGTGGGCAGTACACGTAGG 60.109 60.000 0.00 0.00 41.64 3.18
84 85 0.540133 TGTGGGCAGTACACGTAGGA 60.540 55.000 0.00 0.00 41.64 2.94
90 91 3.155501 GGCAGTACACGTAGGATAGGAT 58.844 50.000 0.00 0.00 0.00 3.24
93 94 4.063689 CAGTACACGTAGGATAGGATCGT 58.936 47.826 0.00 0.00 35.12 3.73
110 111 3.356983 TCGTACACGTGCAGGATTGCT 62.357 52.381 17.22 0.00 43.70 3.91
189 194 6.054295 GCATATCTTGTCTCAGTGGAATCTT 58.946 40.000 0.00 0.00 0.00 2.40
201 207 5.765182 TCAGTGGAATCTTCTCTGGTTTTTC 59.235 40.000 12.10 0.00 33.55 2.29
202 208 4.757149 AGTGGAATCTTCTCTGGTTTTTCG 59.243 41.667 0.00 0.00 0.00 3.46
208 214 5.243426 TCTTCTCTGGTTTTTCGTTTTGG 57.757 39.130 0.00 0.00 0.00 3.28
211 217 4.989044 TCTCTGGTTTTTCGTTTTGGTTC 58.011 39.130 0.00 0.00 0.00 3.62
216 222 1.910688 TTTTCGTTTTGGTTCGGCAC 58.089 45.000 0.00 0.00 0.00 5.01
309 316 1.573108 ACCACCGTTCCAGATCAGAT 58.427 50.000 0.00 0.00 0.00 2.90
893 943 1.375098 GCAGACCATCCAGAGCAAGC 61.375 60.000 0.00 0.00 0.00 4.01
936 993 0.449786 TTCCAAACACAGCACACACG 59.550 50.000 0.00 0.00 0.00 4.49
938 995 1.136356 CAAACACAGCACACACGCA 59.864 52.632 0.00 0.00 0.00 5.24
960 1021 2.227568 GCAGTTAGAGCGAGCGAGC 61.228 63.158 0.00 0.00 37.41 5.03
1393 1454 0.669932 TGTTGCCATTGCCGATTTGC 60.670 50.000 0.00 0.00 36.33 3.68
1394 1455 1.079266 TTGCCATTGCCGATTTGCC 60.079 52.632 0.00 0.00 36.33 4.52
1467 1528 5.473846 ACTGTATCTATCACTATGTGACCGG 59.526 44.000 0.00 0.00 45.65 5.28
1806 1873 4.755411 CCACATACGTAGTTGGTGAGAAT 58.245 43.478 14.49 0.00 43.02 2.40
1807 1874 4.566759 CCACATACGTAGTTGGTGAGAATG 59.433 45.833 14.49 1.87 43.02 2.67
1808 1875 4.566759 CACATACGTAGTTGGTGAGAATGG 59.433 45.833 0.08 0.00 43.02 3.16
1809 1876 4.464951 ACATACGTAGTTGGTGAGAATGGA 59.535 41.667 0.08 0.00 37.78 3.41
1863 1943 8.311650 TGTCAAAAGTTAATCAGCTTCTAGAC 57.688 34.615 0.00 0.00 0.00 2.59
1868 1948 9.438228 AAAAGTTAATCAGCTTCTAGACTAACC 57.562 33.333 0.00 0.00 0.00 2.85
1869 1949 7.719871 AGTTAATCAGCTTCTAGACTAACCA 57.280 36.000 0.00 0.00 0.00 3.67
1870 1950 7.777095 AGTTAATCAGCTTCTAGACTAACCAG 58.223 38.462 0.00 0.00 0.00 4.00
1871 1951 7.397761 AGTTAATCAGCTTCTAGACTAACCAGT 59.602 37.037 0.00 0.00 37.87 4.00
1872 1952 8.684520 GTTAATCAGCTTCTAGACTAACCAGTA 58.315 37.037 0.00 0.00 34.21 2.74
1873 1953 7.906199 AATCAGCTTCTAGACTAACCAGTAT 57.094 36.000 0.00 0.00 34.21 2.12
1874 1954 7.906199 ATCAGCTTCTAGACTAACCAGTATT 57.094 36.000 0.00 0.00 34.21 1.89
1875 1955 8.998277 ATCAGCTTCTAGACTAACCAGTATTA 57.002 34.615 0.00 0.00 34.21 0.98
1876 1956 8.453238 TCAGCTTCTAGACTAACCAGTATTAG 57.547 38.462 0.00 0.00 38.03 1.73
1892 1972 9.872684 ACCAGTATTAGTAATTAGCTGTAGGTA 57.127 33.333 0.00 0.00 0.00 3.08
1901 1981 8.142551 AGTAATTAGCTGTAGGTATGTAACTGC 58.857 37.037 0.00 0.00 38.07 4.40
1902 1982 6.732896 ATTAGCTGTAGGTATGTAACTGCT 57.267 37.500 0.00 10.26 46.15 4.24
1904 1984 5.517322 AGCTGTAGGTATGTAACTGCTAC 57.483 43.478 4.55 0.00 43.73 3.58
1907 1987 2.884894 AGGTATGTAACTGCTACGCC 57.115 50.000 0.00 0.00 32.65 5.68
1909 1989 3.559069 AGGTATGTAACTGCTACGCCTA 58.441 45.455 0.00 0.00 31.80 3.93
1910 1990 3.317430 AGGTATGTAACTGCTACGCCTAC 59.683 47.826 0.00 0.00 31.80 3.18
1911 1991 3.067180 GGTATGTAACTGCTACGCCTACA 59.933 47.826 0.00 0.00 32.65 2.74
1912 1992 4.261909 GGTATGTAACTGCTACGCCTACAT 60.262 45.833 0.00 0.00 32.65 2.29
1913 1993 5.048504 GGTATGTAACTGCTACGCCTACATA 60.049 44.000 0.00 0.00 32.65 2.29
1955 2068 3.629087 ACTGCTACGTACTTACTGGGAT 58.371 45.455 0.00 0.00 0.00 3.85
1956 2069 3.380637 ACTGCTACGTACTTACTGGGATG 59.619 47.826 0.00 0.00 0.00 3.51
1957 2070 2.691526 TGCTACGTACTTACTGGGATGG 59.308 50.000 0.00 0.00 0.00 3.51
1958 2071 2.954318 GCTACGTACTTACTGGGATGGA 59.046 50.000 0.00 0.00 0.00 3.41
1959 2072 3.573110 GCTACGTACTTACTGGGATGGAT 59.427 47.826 0.00 0.00 0.00 3.41
1960 2073 4.558898 GCTACGTACTTACTGGGATGGATG 60.559 50.000 0.00 0.00 0.00 3.51
1961 2074 2.698797 ACGTACTTACTGGGATGGATGG 59.301 50.000 0.00 0.00 0.00 3.51
1962 2075 2.963101 CGTACTTACTGGGATGGATGGA 59.037 50.000 0.00 0.00 0.00 3.41
1963 2076 3.578716 CGTACTTACTGGGATGGATGGAT 59.421 47.826 0.00 0.00 0.00 3.41
1964 2077 4.561530 CGTACTTACTGGGATGGATGGATG 60.562 50.000 0.00 0.00 0.00 3.51
1965 2078 2.107204 ACTTACTGGGATGGATGGATGC 59.893 50.000 0.00 0.00 0.00 3.91
1966 2079 1.818419 TACTGGGATGGATGGATGCA 58.182 50.000 0.00 0.00 0.00 3.96
1967 2080 1.155323 ACTGGGATGGATGGATGCAT 58.845 50.000 0.00 0.00 41.76 3.96
1968 2081 1.203013 ACTGGGATGGATGGATGCATG 60.203 52.381 2.46 0.00 39.04 4.06
1969 2082 0.854908 TGGGATGGATGGATGCATGT 59.145 50.000 2.46 0.00 39.04 3.21
1970 2083 1.254026 GGGATGGATGGATGCATGTG 58.746 55.000 2.46 0.00 39.04 3.21
1971 2084 1.479942 GGGATGGATGGATGCATGTGT 60.480 52.381 2.46 0.00 39.04 3.72
1972 2085 1.611977 GGATGGATGGATGCATGTGTG 59.388 52.381 2.46 0.00 39.04 3.82
1973 2086 2.304092 GATGGATGGATGCATGTGTGT 58.696 47.619 2.46 0.00 39.04 3.72
1974 2087 1.465794 TGGATGGATGCATGTGTGTG 58.534 50.000 2.46 0.00 0.00 3.82
1975 2088 1.272037 TGGATGGATGCATGTGTGTGT 60.272 47.619 2.46 0.00 0.00 3.72
1976 2089 1.133598 GGATGGATGCATGTGTGTGTG 59.866 52.381 2.46 0.00 0.00 3.82
2148 2261 2.970639 CGCTCCGTCTTCTCCCAA 59.029 61.111 0.00 0.00 0.00 4.12
2184 2297 8.243426 GTCCAGTATCTAATCACTCATCATCTC 58.757 40.741 0.00 0.00 0.00 2.75
2193 2309 7.838079 AATCACTCATCATCTCTTAGTAGCT 57.162 36.000 0.00 0.00 0.00 3.32
2197 2313 8.845227 TCACTCATCATCTCTTAGTAGCTAAAG 58.155 37.037 0.00 0.00 0.00 1.85
2224 2343 2.805671 TGACACTTGCATCTTGTTACCG 59.194 45.455 0.00 0.00 0.00 4.02
2236 2355 7.812669 TGCATCTTGTTACCGATACATACATAG 59.187 37.037 0.00 0.00 0.00 2.23
2341 2508 6.653989 AGTGGCTAGTAGTAGAATTTTGCAT 58.346 36.000 8.87 0.00 0.00 3.96
2373 2544 2.558378 TGTCTGTCCGTAGATAGTCGG 58.442 52.381 0.00 0.00 46.93 4.79
2387 2558 8.021973 CGTAGATAGTCGGCAAGAACTTATTAT 58.978 37.037 0.00 0.00 0.00 1.28
2388 2559 9.344309 GTAGATAGTCGGCAAGAACTTATTATC 57.656 37.037 0.00 0.00 0.00 1.75
2389 2560 7.952671 AGATAGTCGGCAAGAACTTATTATCA 58.047 34.615 0.00 0.00 0.00 2.15
2390 2561 8.085296 AGATAGTCGGCAAGAACTTATTATCAG 58.915 37.037 0.00 0.00 0.00 2.90
2391 2562 5.978814 AGTCGGCAAGAACTTATTATCAGT 58.021 37.500 0.00 0.00 0.00 3.41
2392 2563 6.043411 AGTCGGCAAGAACTTATTATCAGTC 58.957 40.000 0.00 0.00 0.00 3.51
2414 2585 0.109919 GCCATGAAAAACGGACGGAC 60.110 55.000 0.00 0.00 0.00 4.79
2415 2586 0.519961 CCATGAAAAACGGACGGACC 59.480 55.000 0.00 0.00 0.00 4.46
2486 2658 4.258457 AGGCACAATCCTCTAGAGTACT 57.742 45.455 18.42 0.00 0.00 2.73
2487 2659 5.390087 AGGCACAATCCTCTAGAGTACTA 57.610 43.478 18.42 1.75 0.00 1.82
2488 2660 5.381757 AGGCACAATCCTCTAGAGTACTAG 58.618 45.833 18.42 6.91 45.21 2.57
2489 2661 4.521256 GGCACAATCCTCTAGAGTACTAGG 59.479 50.000 18.42 0.00 44.30 3.02
2532 2704 3.434637 GCAAGGTTAATTACGTGCATGG 58.565 45.455 11.36 0.00 37.99 3.66
2556 2728 0.324943 CCCGTGAAGGACAGGAACAT 59.675 55.000 0.00 0.00 45.00 2.71
2613 2801 0.035881 CATGCCGATGCCTATGTCCT 59.964 55.000 0.00 0.00 36.33 3.85
2871 3060 4.789119 CGCTTCTTCGTAAGTCAAGTCTAG 59.211 45.833 0.00 0.00 39.48 2.43
2964 3158 5.450965 CCATATGCTTTCGATTGCCTTTTCT 60.451 40.000 0.00 0.00 0.00 2.52
2989 3183 4.816786 TTAACCGCAAGTTAAACACCTC 57.183 40.909 6.60 0.00 45.74 3.85
2990 3184 2.335316 ACCGCAAGTTAAACACCTCA 57.665 45.000 0.00 0.00 0.00 3.86
2991 3185 2.858745 ACCGCAAGTTAAACACCTCAT 58.141 42.857 0.00 0.00 0.00 2.90
2992 3186 2.552315 ACCGCAAGTTAAACACCTCATG 59.448 45.455 0.00 0.00 0.00 3.07
2993 3187 2.584791 CGCAAGTTAAACACCTCATGC 58.415 47.619 0.00 0.00 0.00 4.06
2994 3188 2.226437 CGCAAGTTAAACACCTCATGCT 59.774 45.455 0.00 0.00 0.00 3.79
2995 3189 3.304659 CGCAAGTTAAACACCTCATGCTT 60.305 43.478 0.00 0.00 0.00 3.91
3034 3244 1.175983 CCCGATTCGCCTCTCTAGCT 61.176 60.000 0.00 0.00 0.00 3.32
3047 3263 3.280295 TCTCTAGCTAGTGTGGCAGTAC 58.720 50.000 20.10 0.00 0.00 2.73
3071 3287 1.446907 AAGTGGCGCAAGAATCTCTG 58.553 50.000 10.83 0.00 43.02 3.35
3072 3288 0.392193 AGTGGCGCAAGAATCTCTGG 60.392 55.000 10.83 0.00 43.02 3.86
3078 3294 1.741732 CGCAAGAATCTCTGGTCTGGG 60.742 57.143 0.00 0.00 43.02 4.45
3099 3315 3.942748 GGAAACTAATGACGTGCCCAATA 59.057 43.478 0.00 0.00 0.00 1.90
3105 3321 0.951525 TGACGTGCCCAATAACACCG 60.952 55.000 0.00 0.00 33.09 4.94
3140 3356 5.825593 AAACTAGGACCACAAGAGAATCA 57.174 39.130 0.00 0.00 37.82 2.57
3158 3378 1.140852 TCAATCGACCCATCCATCCAC 59.859 52.381 0.00 0.00 0.00 4.02
3161 3381 2.431454 CGACCCATCCATCCACGGA 61.431 63.158 0.00 0.00 40.07 4.69
3226 3446 6.183360 TGCATCTCTAACTCCATTACTGTACC 60.183 42.308 0.00 0.00 0.00 3.34
3232 3452 3.517612 ACTCCATTACTGTACCACCAGT 58.482 45.455 0.00 0.00 46.94 4.00
3306 3536 2.182791 CACAGACGCTGCCTCGAT 59.817 61.111 6.74 0.00 34.37 3.59
3326 3556 2.552031 TCGTGACACGATGTTTTGGAA 58.448 42.857 26.04 0.36 46.73 3.53
3327 3557 2.937149 TCGTGACACGATGTTTTGGAAA 59.063 40.909 26.04 0.00 46.73 3.13
3336 3567 4.221703 ACGATGTTTTGGAAATAATGGCCA 59.778 37.500 8.56 8.56 0.00 5.36
3341 3572 4.774660 TTTGGAAATAATGGCCATGCAT 57.225 36.364 21.63 13.20 0.00 3.96
3346 3577 4.039488 GGAAATAATGGCCATGCATGAGAA 59.961 41.667 28.31 12.49 0.00 2.87
3352 3583 2.236766 GGCCATGCATGAGAAGCTAAT 58.763 47.619 28.31 0.00 0.00 1.73
3364 3595 3.026694 AGAAGCTAATCCCATTTGTGCC 58.973 45.455 0.00 0.00 0.00 5.01
3367 3598 1.032014 CTAATCCCATTTGTGCCCGG 58.968 55.000 0.00 0.00 0.00 5.73
3368 3599 0.333312 TAATCCCATTTGTGCCCGGT 59.667 50.000 0.00 0.00 0.00 5.28
3369 3600 1.257055 AATCCCATTTGTGCCCGGTG 61.257 55.000 0.00 0.00 0.00 4.94
3370 3601 2.148723 ATCCCATTTGTGCCCGGTGA 62.149 55.000 0.00 0.00 0.00 4.02
3371 3602 1.905843 CCCATTTGTGCCCGGTGAA 60.906 57.895 0.00 0.00 0.00 3.18
3372 3603 1.586028 CCATTTGTGCCCGGTGAAG 59.414 57.895 0.00 0.00 0.00 3.02
3373 3604 1.178534 CCATTTGTGCCCGGTGAAGT 61.179 55.000 0.00 0.00 0.00 3.01
3374 3605 0.039256 CATTTGTGCCCGGTGAAGTG 60.039 55.000 0.00 0.00 0.00 3.16
3375 3606 0.179004 ATTTGTGCCCGGTGAAGTGA 60.179 50.000 0.00 0.00 0.00 3.41
3376 3607 0.394488 TTTGTGCCCGGTGAAGTGAA 60.394 50.000 0.00 0.00 0.00 3.18
3377 3608 0.179004 TTGTGCCCGGTGAAGTGAAT 60.179 50.000 0.00 0.00 0.00 2.57
3379 3610 1.338674 TGTGCCCGGTGAAGTGAATAG 60.339 52.381 0.00 0.00 0.00 1.73
3380 3611 0.392461 TGCCCGGTGAAGTGAATAGC 60.392 55.000 0.00 0.00 0.00 2.97
3382 3613 1.948611 GCCCGGTGAAGTGAATAGCAA 60.949 52.381 0.00 0.00 0.00 3.91
3384 3615 2.009774 CCGGTGAAGTGAATAGCAAGG 58.990 52.381 0.00 0.00 0.00 3.61
3396 3643 1.891933 TAGCAAGGATGGTCCATGGA 58.108 50.000 11.44 11.44 39.61 3.41
3408 3655 1.816835 GTCCATGGATGCATATGGCTG 59.183 52.381 19.62 5.66 42.82 4.85
3416 3663 0.535780 TGCATATGGCTGGCTAGTGC 60.536 55.000 4.56 14.62 45.15 4.40
3681 3952 4.886489 TCATCTCTGACGATCTGATCTTGT 59.114 41.667 15.16 6.95 0.00 3.16
3694 3965 6.566079 TCTGATCTTGTTCCATACTTCCAT 57.434 37.500 0.00 0.00 0.00 3.41
3721 3992 1.742831 CTTCCTCCTCGTCTGTCTCTG 59.257 57.143 0.00 0.00 0.00 3.35
3722 3993 0.984995 TCCTCCTCGTCTGTCTCTGA 59.015 55.000 0.00 0.00 0.00 3.27
3723 3994 1.351350 TCCTCCTCGTCTGTCTCTGAA 59.649 52.381 0.00 0.00 0.00 3.02
3741 4012 6.489700 TCTCTGAAGAACACCATGCAAAAATA 59.510 34.615 0.00 0.00 0.00 1.40
3743 4014 6.922957 TCTGAAGAACACCATGCAAAAATAAC 59.077 34.615 0.00 0.00 0.00 1.89
3744 4015 6.577103 TGAAGAACACCATGCAAAAATAACA 58.423 32.000 0.00 0.00 0.00 2.41
3759 4037 8.288913 GCAAAAATAACATGCCTTTACACAAAT 58.711 29.630 0.00 0.00 34.03 2.32
3781 4059 4.511527 TCCAATTTGATCTCTGCACTCTC 58.488 43.478 0.00 0.00 0.00 3.20
3782 4060 4.224594 TCCAATTTGATCTCTGCACTCTCT 59.775 41.667 0.00 0.00 0.00 3.10
3783 4061 5.423290 TCCAATTTGATCTCTGCACTCTCTA 59.577 40.000 0.00 0.00 0.00 2.43
3784 4062 5.754406 CCAATTTGATCTCTGCACTCTCTAG 59.246 44.000 0.00 0.00 0.00 2.43
3785 4063 6.339730 CAATTTGATCTCTGCACTCTCTAGT 58.660 40.000 0.00 0.00 35.91 2.57
3786 4064 7.417229 CCAATTTGATCTCTGCACTCTCTAGTA 60.417 40.741 0.00 0.00 33.48 1.82
3787 4065 6.443934 TTTGATCTCTGCACTCTCTAGTAC 57.556 41.667 0.00 0.00 33.48 2.73
3879 4210 0.594602 CGTGTTGGTAGTGACGGAGA 59.405 55.000 0.00 0.00 0.00 3.71
3890 4223 5.006746 GGTAGTGACGGAGAAGCATAATTTG 59.993 44.000 0.00 0.00 0.00 2.32
3937 4271 2.291465 GTGTCATTTTCTGTCAGCAGCA 59.709 45.455 0.00 0.00 42.29 4.41
3943 4277 0.469494 TTCTGTCAGCAGCAGGACAA 59.531 50.000 17.55 8.75 42.91 3.18
3953 4287 2.617274 GCAGGACAACGCTTGACCC 61.617 63.158 12.67 9.22 44.86 4.46
3966 4303 1.592400 TTGACCCGCGTCCTGACTAG 61.592 60.000 4.92 0.00 38.32 2.57
4033 4370 3.540211 GACCAGATATCATGGGCGG 57.460 57.895 19.24 7.57 42.48 6.13
4197 4540 6.546034 GTGTAGCCACCCAATTTTATATGTCT 59.454 38.462 0.00 0.00 35.44 3.41
4202 4545 6.653320 GCCACCCAATTTTATATGTCTCGATA 59.347 38.462 0.00 0.00 0.00 2.92
4233 4594 7.823745 ACTTGTTCTTGAGTATTCCAATGTT 57.176 32.000 0.00 0.00 0.00 2.71
4247 4608 4.532276 TCCAATGTTTTCGTCATGTTTCG 58.468 39.130 0.00 0.00 0.00 3.46
4255 4616 0.785708 CGTCATGTTTCGAAGCGCAC 60.786 55.000 11.47 1.68 0.00 5.34
4389 4831 3.020984 TGGTCCAAGTTGAACCAAGAAC 58.979 45.455 12.13 0.00 40.04 3.01
4396 4838 6.262273 TCCAAGTTGAACCAAGAACTGATTAC 59.738 38.462 3.87 0.00 32.66 1.89
4439 4881 4.574828 TGCTCTGAAACCACTTCAAGTTAC 59.425 41.667 0.00 0.00 43.54 2.50
4441 4883 4.124238 TCTGAAACCACTTCAAGTTACCG 58.876 43.478 0.00 0.00 43.54 4.02
4442 4884 3.207778 TGAAACCACTTCAAGTTACCGG 58.792 45.455 0.00 0.00 41.21 5.28
4443 4885 3.118334 TGAAACCACTTCAAGTTACCGGA 60.118 43.478 9.46 0.00 41.21 5.14
4444 4886 2.833631 ACCACTTCAAGTTACCGGAG 57.166 50.000 9.46 0.00 0.00 4.63
4445 4887 2.044758 ACCACTTCAAGTTACCGGAGT 58.955 47.619 9.46 0.00 0.00 3.85
4446 4888 3.233507 ACCACTTCAAGTTACCGGAGTA 58.766 45.455 9.46 0.00 0.00 2.59
4447 4889 3.257624 ACCACTTCAAGTTACCGGAGTAG 59.742 47.826 9.46 0.00 0.00 2.57
4448 4890 3.257624 CCACTTCAAGTTACCGGAGTAGT 59.742 47.826 9.46 0.00 0.00 2.73
4455 4897 6.344500 TCAAGTTACCGGAGTAGTACTCTAG 58.656 44.000 25.70 19.72 44.46 2.43
4492 4934 9.023962 TGTTTCATGGAACTAATCTTATGCTTT 57.976 29.630 17.76 0.00 0.00 3.51
4595 5037 0.618458 TGGTCTACTTCACCCATGCC 59.382 55.000 0.00 0.00 32.24 4.40
4616 5058 3.366476 CCGAAAACCATGGCGTTCAAATA 60.366 43.478 21.73 0.00 0.00 1.40
4631 5073 5.296780 CGTTCAAATAGTGAGCAACCCATAT 59.703 40.000 0.00 0.00 37.31 1.78
4632 5074 6.481976 CGTTCAAATAGTGAGCAACCCATATA 59.518 38.462 0.00 0.00 37.31 0.86
4639 5081 5.754782 AGTGAGCAACCCATATACATTCAA 58.245 37.500 0.00 0.00 0.00 2.69
4649 5091 7.771183 ACCCATATACATTCAACACAACATTC 58.229 34.615 0.00 0.00 0.00 2.67
4658 5101 0.306533 ACACAACATTCGTTCCACGC 59.693 50.000 0.00 0.00 42.21 5.34
4667 5110 0.098200 TCGTTCCACGCTATGTCGAG 59.902 55.000 0.00 0.00 42.21 4.04
4671 5114 0.733150 TCCACGCTATGTCGAGTGAG 59.267 55.000 2.09 0.00 36.93 3.51
4673 5116 1.669265 CCACGCTATGTCGAGTGAGTA 59.331 52.381 2.09 0.00 36.93 2.59
4676 5119 3.008330 ACGCTATGTCGAGTGAGTAACT 58.992 45.455 0.00 0.00 43.85 2.24
4790 5233 1.068083 CCGTACATGATGCTCGCCT 59.932 57.895 0.00 0.00 0.00 5.52
4843 5286 0.818445 TCGCCGTAAGCCCAACAAAA 60.818 50.000 0.00 0.00 38.78 2.44
4848 5291 3.129638 GCCGTAAGCCCAACAAAATCATA 59.870 43.478 0.00 0.00 34.35 2.15
4873 5333 3.420300 TCGCCCAAGTAAATTACACCA 57.580 42.857 5.89 0.00 0.00 4.17
4913 5373 2.847234 CCTGCCGGCTGGGGTATA 60.847 66.667 37.52 11.53 35.78 1.47
5025 5485 0.815615 GGACGATGAACATCCTGGGC 60.816 60.000 8.87 0.00 34.40 5.36
5556 6016 2.194212 CCGGTGGATCGACGAGGAT 61.194 63.158 13.28 0.00 0.00 3.24
5559 6019 0.030908 GGTGGATCGACGAGGATGAC 59.969 60.000 3.01 0.00 0.00 3.06
5667 6150 1.593196 TTGCTCCGTCTGAAACTTGG 58.407 50.000 0.00 0.00 0.00 3.61
5671 6154 2.678324 CTCCGTCTGAAACTTGGTCTC 58.322 52.381 0.00 0.00 0.00 3.36
5673 6156 3.493334 TCCGTCTGAAACTTGGTCTCTA 58.507 45.455 0.00 0.00 0.00 2.43
5675 6158 4.158025 TCCGTCTGAAACTTGGTCTCTATC 59.842 45.833 0.00 0.00 0.00 2.08
5678 6161 5.566826 CGTCTGAAACTTGGTCTCTATCCAA 60.567 44.000 0.00 0.00 41.84 3.53
5679 6162 6.410540 GTCTGAAACTTGGTCTCTATCCAAT 58.589 40.000 0.00 0.00 42.89 3.16
5680 6163 6.881602 GTCTGAAACTTGGTCTCTATCCAATT 59.118 38.462 0.00 0.00 42.89 2.32
5681 6164 8.041323 GTCTGAAACTTGGTCTCTATCCAATTA 58.959 37.037 0.00 0.00 42.89 1.40
5682 6165 8.041323 TCTGAAACTTGGTCTCTATCCAATTAC 58.959 37.037 0.00 0.00 42.89 1.89
5683 6166 7.685481 TGAAACTTGGTCTCTATCCAATTACA 58.315 34.615 0.00 0.00 42.89 2.41
5684 6167 7.606456 TGAAACTTGGTCTCTATCCAATTACAC 59.394 37.037 0.00 0.00 42.89 2.90
5685 6168 6.875972 ACTTGGTCTCTATCCAATTACACT 57.124 37.500 0.00 0.00 42.89 3.55
5686 6169 6.644347 ACTTGGTCTCTATCCAATTACACTG 58.356 40.000 0.00 0.00 42.89 3.66
5687 6170 5.023533 TGGTCTCTATCCAATTACACTGC 57.976 43.478 0.00 0.00 31.50 4.40
5688 6171 4.469586 TGGTCTCTATCCAATTACACTGCA 59.530 41.667 0.00 0.00 31.50 4.41
5689 6172 4.811557 GGTCTCTATCCAATTACACTGCAC 59.188 45.833 0.00 0.00 0.00 4.57
5690 6173 5.419542 GTCTCTATCCAATTACACTGCACA 58.580 41.667 0.00 0.00 0.00 4.57
5691 6174 5.874810 GTCTCTATCCAATTACACTGCACAA 59.125 40.000 0.00 0.00 0.00 3.33
5692 6175 6.371548 GTCTCTATCCAATTACACTGCACAAA 59.628 38.462 0.00 0.00 0.00 2.83
5693 6176 6.371548 TCTCTATCCAATTACACTGCACAAAC 59.628 38.462 0.00 0.00 0.00 2.93
5694 6177 6.000840 TCTATCCAATTACACTGCACAAACA 58.999 36.000 0.00 0.00 0.00 2.83
5695 6178 5.726980 ATCCAATTACACTGCACAAACAT 57.273 34.783 0.00 0.00 0.00 2.71
5696 6179 5.119931 TCCAATTACACTGCACAAACATC 57.880 39.130 0.00 0.00 0.00 3.06
5697 6180 4.826733 TCCAATTACACTGCACAAACATCT 59.173 37.500 0.00 0.00 0.00 2.90
5698 6181 5.048782 TCCAATTACACTGCACAAACATCTC 60.049 40.000 0.00 0.00 0.00 2.75
5704 6187 1.210155 GCACAAACATCTCGGGCAC 59.790 57.895 0.00 0.00 0.00 5.01
5718 6201 1.743996 GGGCACTGGATCTGAAACTC 58.256 55.000 0.00 0.00 0.00 3.01
5739 6222 0.946221 CGTTTCTCTCCGCAGCTGTT 60.946 55.000 16.64 0.00 0.00 3.16
5742 6225 1.758440 TTCTCTCCGCAGCTGTTGGT 61.758 55.000 21.66 0.00 0.00 3.67
5748 6231 1.308069 CCGCAGCTGTTGGTAGCATT 61.308 55.000 16.64 0.00 46.07 3.56
5790 6273 0.241213 TGGACGAGCTCAAGAAGACG 59.759 55.000 15.40 0.00 34.25 4.18
5826 6309 4.187694 GGATTCAGGTAAGAACAGAGCAG 58.812 47.826 0.00 0.00 0.00 4.24
5829 6312 2.368548 TCAGGTAAGAACAGAGCAGCAA 59.631 45.455 0.00 0.00 0.00 3.91
5833 6316 4.829492 AGGTAAGAACAGAGCAGCAAAAAT 59.171 37.500 0.00 0.00 0.00 1.82
5864 6347 4.952262 TCTGAAGAAAGTATGTGCATGC 57.048 40.909 11.82 11.82 0.00 4.06
5865 6348 4.582869 TCTGAAGAAAGTATGTGCATGCT 58.417 39.130 20.33 0.40 35.21 3.79
5866 6349 4.633126 TCTGAAGAAAGTATGTGCATGCTC 59.367 41.667 20.33 16.39 32.50 4.26
5873 6358 3.882444 AGTATGTGCATGCTCTGTCATT 58.118 40.909 20.33 0.00 0.00 2.57
5878 6363 3.012518 GTGCATGCTCTGTCATTAACCT 58.987 45.455 20.33 0.00 0.00 3.50
5920 6405 3.950794 GATCGTGCTGGCGAACCCA 62.951 63.158 3.14 0.00 44.38 4.51
6055 6540 3.443045 CACAAGCCGGGCATGGTC 61.443 66.667 26.06 0.00 31.12 4.02
6098 6583 1.988107 ACATGGTCTGATTGGGTCTGT 59.012 47.619 0.00 0.00 0.00 3.41
6099 6584 3.181329 ACATGGTCTGATTGGGTCTGTA 58.819 45.455 0.00 0.00 0.00 2.74
6101 6586 1.906574 TGGTCTGATTGGGTCTGTACC 59.093 52.381 0.00 0.00 45.97 3.34
6143 6628 1.884464 GCAATGCGAGCCGAGATCA 60.884 57.895 0.00 0.00 0.00 2.92
6145 6630 1.068753 AATGCGAGCCGAGATCAGG 59.931 57.895 0.00 0.00 0.00 3.86
6259 6744 9.884046 AGCCAAGCTTGTGCAAATGCAATATAA 62.884 37.037 29.45 3.09 45.10 0.98
6342 6827 1.458398 TGGTTGCATGACGTAATGGG 58.542 50.000 14.88 0.00 0.00 4.00
6343 6828 1.003696 TGGTTGCATGACGTAATGGGA 59.996 47.619 14.88 0.00 0.00 4.37
6345 6830 2.033299 GGTTGCATGACGTAATGGGATG 59.967 50.000 14.88 0.00 0.00 3.51
6346 6831 1.308047 TGCATGACGTAATGGGATGC 58.692 50.000 14.88 9.47 39.90 3.91
6347 6832 0.593128 GCATGACGTAATGGGATGCC 59.407 55.000 14.88 0.00 34.58 4.40
6348 6833 1.965935 CATGACGTAATGGGATGCCA 58.034 50.000 9.00 9.00 0.00 4.92
6349 6834 2.507484 CATGACGTAATGGGATGCCAT 58.493 47.619 13.89 13.89 0.00 4.40
6352 6837 1.873591 GACGTAATGGGATGCCATCAC 59.126 52.381 20.20 14.67 0.00 3.06
6355 6840 1.610522 GTAATGGGATGCCATCACTGC 59.389 52.381 20.20 3.91 32.63 4.40
6356 6841 0.260816 AATGGGATGCCATCACTGCT 59.739 50.000 20.20 0.00 32.63 4.24
6359 6844 1.496001 TGGGATGCCATCACTGCTAAT 59.504 47.619 8.67 0.00 32.63 1.73
6362 6847 3.503748 GGGATGCCATCACTGCTAATAAC 59.496 47.826 7.06 0.00 0.00 1.89
6363 6848 4.136796 GGATGCCATCACTGCTAATAACA 58.863 43.478 7.06 0.00 0.00 2.41
6364 6849 4.580167 GGATGCCATCACTGCTAATAACAA 59.420 41.667 7.06 0.00 0.00 2.83
6366 6851 5.973899 TGCCATCACTGCTAATAACAAAA 57.026 34.783 0.00 0.00 0.00 2.44
6368 6853 6.934056 TGCCATCACTGCTAATAACAAAATT 58.066 32.000 0.00 0.00 0.00 1.82
6369 6854 7.385267 TGCCATCACTGCTAATAACAAAATTT 58.615 30.769 0.00 0.00 0.00 1.82
6370 6855 7.331440 TGCCATCACTGCTAATAACAAAATTTG 59.669 33.333 3.89 3.89 0.00 2.32
6374 6891 7.601856 TCACTGCTAATAACAAAATTTGGGAG 58.398 34.615 10.71 4.34 34.12 4.30
6408 6925 1.486310 ACACTTGCAGAGGACAGACAA 59.514 47.619 0.00 0.00 0.00 3.18
6412 6929 4.940046 CACTTGCAGAGGACAGACAAATAT 59.060 41.667 0.00 0.00 0.00 1.28
6438 6956 9.554395 TGAACAGAAAAGTTAACAGACATATGA 57.446 29.630 10.38 0.00 0.00 2.15
6440 6958 8.553459 ACAGAAAAGTTAACAGACATATGAGG 57.447 34.615 10.38 0.63 0.00 3.86
6441 6959 7.119846 ACAGAAAAGTTAACAGACATATGAGGC 59.880 37.037 10.38 0.00 0.00 4.70
6442 6960 7.119699 CAGAAAAGTTAACAGACATATGAGGCA 59.880 37.037 10.38 0.00 0.00 4.75
6443 6961 6.743575 AAAGTTAACAGACATATGAGGCAC 57.256 37.500 10.38 0.00 0.00 5.01
6445 6963 5.423015 AGTTAACAGACATATGAGGCACTG 58.577 41.667 10.38 11.96 41.55 3.66
6446 6964 5.187772 AGTTAACAGACATATGAGGCACTGA 59.812 40.000 10.38 0.00 41.55 3.41
6447 6965 3.815856 ACAGACATATGAGGCACTGAG 57.184 47.619 10.38 0.00 41.55 3.35
6448 6966 3.369175 ACAGACATATGAGGCACTGAGA 58.631 45.455 10.38 0.00 41.55 3.27
6449 6967 3.384146 ACAGACATATGAGGCACTGAGAG 59.616 47.826 10.38 0.00 41.55 3.20
6450 6968 3.384146 CAGACATATGAGGCACTGAGAGT 59.616 47.826 10.38 0.00 41.55 3.24
6451 6969 4.582240 CAGACATATGAGGCACTGAGAGTA 59.418 45.833 10.38 0.00 41.55 2.59
6452 6970 5.243507 CAGACATATGAGGCACTGAGAGTAT 59.756 44.000 10.38 0.00 41.55 2.12
6453 6971 6.432472 CAGACATATGAGGCACTGAGAGTATA 59.568 42.308 10.38 0.00 41.55 1.47
6461 6979 6.008696 AGGCACTGAGAGTATAAGACTACT 57.991 41.667 0.00 0.00 35.96 2.57
6475 6993 9.890352 GTATAAGACTACTAATAACCAAGTCGG 57.110 37.037 0.00 0.00 41.12 4.79
6477 6995 4.037858 ACTACTAATAACCAAGTCGGCG 57.962 45.455 0.00 0.00 39.03 6.46
6478 6996 3.696051 ACTACTAATAACCAAGTCGGCGA 59.304 43.478 4.99 4.99 39.03 5.54
6479 6997 3.814005 ACTAATAACCAAGTCGGCGAT 57.186 42.857 14.79 0.00 39.03 4.58
6489 7018 2.264005 AGTCGGCGATAGATCAGAGT 57.736 50.000 14.79 0.00 39.76 3.24
6491 7020 3.068560 AGTCGGCGATAGATCAGAGTAC 58.931 50.000 14.79 0.00 39.76 2.73
6498 7027 5.065474 GGCGATAGATCAGAGTACCAGTATC 59.935 48.000 0.00 0.00 39.76 2.24
6515 7044 5.523916 CCAGTATCGACTACCAAATTCCAAG 59.476 44.000 0.00 0.00 33.32 3.61
6519 7048 4.513442 TCGACTACCAAATTCCAAGATGG 58.487 43.478 0.00 0.00 39.43 3.51
6559 7088 9.892130 ATCTAAATACAGTAAAAAGGGAGTGAG 57.108 33.333 0.00 0.00 0.00 3.51
6618 7147 5.798132 TCATTGCAGACATAGAGAAACAGT 58.202 37.500 0.00 0.00 0.00 3.55
6634 7163 0.804989 CAGTGAAGGGCAACGGAATC 59.195 55.000 0.00 0.00 37.60 2.52
6652 7181 4.496895 GGAATCACAAAATGCTTCGATTCG 59.503 41.667 0.00 0.00 39.60 3.34
6698 7227 4.341487 AGTTAAAACTAGGGGGACATTGC 58.659 43.478 0.00 0.00 37.52 3.56
6699 7228 2.231716 AAAACTAGGGGGACATTGCC 57.768 50.000 0.00 0.00 0.00 4.52
6700 7229 1.382914 AAACTAGGGGGACATTGCCT 58.617 50.000 0.00 0.00 0.00 4.75
6701 7230 0.919710 AACTAGGGGGACATTGCCTC 59.080 55.000 0.00 0.00 0.00 4.70
6702 7231 0.253160 ACTAGGGGGACATTGCCTCA 60.253 55.000 0.00 0.00 26.14 3.86
6703 7232 1.143813 CTAGGGGGACATTGCCTCAT 58.856 55.000 0.00 0.00 26.14 2.90
6704 7233 1.496429 CTAGGGGGACATTGCCTCATT 59.504 52.381 0.00 0.00 26.14 2.57
6705 7234 0.712380 AGGGGGACATTGCCTCATTT 59.288 50.000 0.00 0.00 26.14 2.32
6706 7235 1.079323 AGGGGGACATTGCCTCATTTT 59.921 47.619 0.00 0.00 26.14 1.82
6707 7236 1.908619 GGGGGACATTGCCTCATTTTT 59.091 47.619 0.00 0.00 0.00 1.94
6745 7274 1.065701 CTGAATGCATGAGCTCCTTGC 59.934 52.381 24.45 24.45 43.79 4.01
6763 7292 4.097437 CCTTGCTAACATCATCATGCAACT 59.903 41.667 0.00 0.00 35.83 3.16
6778 7307 5.871524 TCATGCAACTCATTACAGAAGAGAC 59.128 40.000 0.00 0.00 31.79 3.36
6818 7347 2.224843 TGCAGCTCCAAATCAGAAGGAA 60.225 45.455 0.00 0.00 0.00 3.36
6821 7350 4.015084 CAGCTCCAAATCAGAAGGAACAT 58.985 43.478 0.00 0.00 0.00 2.71
6863 7392 1.462283 GAACGAAACGGTTAAGGCTCC 59.538 52.381 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.962884 ACTTGCTGGTTTTCTTTAATGAAAAT 57.037 26.923 24.00 9.56 44.42 1.82
1 2 9.308318 GTACTTGCTGGTTTTCTTTAATGAAAA 57.692 29.630 19.75 19.75 41.75 2.29
2 3 8.691797 AGTACTTGCTGGTTTTCTTTAATGAAA 58.308 29.630 11.39 11.39 34.55 2.69
3 4 8.232913 AGTACTTGCTGGTTTTCTTTAATGAA 57.767 30.769 0.00 0.00 0.00 2.57
4 5 7.817418 AGTACTTGCTGGTTTTCTTTAATGA 57.183 32.000 0.00 0.00 0.00 2.57
5 6 7.323656 CGAAGTACTTGCTGGTTTTCTTTAATG 59.676 37.037 14.14 0.00 0.00 1.90
6 7 7.227910 TCGAAGTACTTGCTGGTTTTCTTTAAT 59.772 33.333 14.14 0.00 0.00 1.40
7 8 6.539464 TCGAAGTACTTGCTGGTTTTCTTTAA 59.461 34.615 14.14 0.00 0.00 1.52
8 9 6.050432 TCGAAGTACTTGCTGGTTTTCTTTA 58.950 36.000 14.14 0.00 0.00 1.85
9 10 4.879545 TCGAAGTACTTGCTGGTTTTCTTT 59.120 37.500 14.14 0.00 0.00 2.52
10 11 4.448210 TCGAAGTACTTGCTGGTTTTCTT 58.552 39.130 14.14 0.00 0.00 2.52
11 12 4.058817 CTCGAAGTACTTGCTGGTTTTCT 58.941 43.478 14.14 0.00 0.00 2.52
12 13 3.364068 GCTCGAAGTACTTGCTGGTTTTC 60.364 47.826 14.14 0.00 0.00 2.29
13 14 2.548480 GCTCGAAGTACTTGCTGGTTTT 59.452 45.455 14.14 0.00 0.00 2.43
14 15 2.143925 GCTCGAAGTACTTGCTGGTTT 58.856 47.619 14.14 0.00 0.00 3.27
15 16 1.344763 AGCTCGAAGTACTTGCTGGTT 59.655 47.619 14.14 0.00 32.32 3.67
16 17 0.969894 AGCTCGAAGTACTTGCTGGT 59.030 50.000 14.14 5.12 32.32 4.00
17 18 2.094700 TGTAGCTCGAAGTACTTGCTGG 60.095 50.000 22.59 8.86 35.47 4.85
18 19 3.217599 TGTAGCTCGAAGTACTTGCTG 57.782 47.619 22.59 10.01 35.47 4.41
19 20 3.839293 CTTGTAGCTCGAAGTACTTGCT 58.161 45.455 14.14 17.37 37.72 3.91
20 21 2.345942 GCTTGTAGCTCGAAGTACTTGC 59.654 50.000 14.14 10.58 38.45 4.01
21 22 3.575630 TGCTTGTAGCTCGAAGTACTTG 58.424 45.455 14.14 5.81 42.97 3.16
22 23 3.936372 TGCTTGTAGCTCGAAGTACTT 57.064 42.857 8.13 8.13 42.97 2.24
23 24 3.576648 GTTGCTTGTAGCTCGAAGTACT 58.423 45.455 0.00 0.00 42.97 2.73
24 25 2.341760 CGTTGCTTGTAGCTCGAAGTAC 59.658 50.000 0.00 0.00 42.97 2.73
25 26 2.030540 ACGTTGCTTGTAGCTCGAAGTA 60.031 45.455 17.73 0.00 42.97 2.24
26 27 1.269621 ACGTTGCTTGTAGCTCGAAGT 60.270 47.619 17.73 4.41 42.97 3.01
27 28 1.419374 ACGTTGCTTGTAGCTCGAAG 58.581 50.000 17.73 0.00 42.97 3.79
28 29 1.860676 AACGTTGCTTGTAGCTCGAA 58.139 45.000 17.73 0.00 42.97 3.71
29 30 2.322161 GTAACGTTGCTTGTAGCTCGA 58.678 47.619 11.99 0.00 42.97 4.04
30 31 1.389106 GGTAACGTTGCTTGTAGCTCG 59.611 52.381 16.07 12.33 42.97 5.03
31 32 1.730612 GGGTAACGTTGCTTGTAGCTC 59.269 52.381 16.07 0.00 39.17 4.09
32 33 1.609841 GGGGTAACGTTGCTTGTAGCT 60.610 52.381 16.07 0.00 39.17 3.32
33 34 0.800631 GGGGTAACGTTGCTTGTAGC 59.199 55.000 16.07 1.76 38.93 3.58
34 35 2.172851 TGGGGTAACGTTGCTTGTAG 57.827 50.000 16.07 0.00 37.60 2.74
35 36 2.863132 ATGGGGTAACGTTGCTTGTA 57.137 45.000 16.07 1.56 37.60 2.41
36 37 2.815503 GTTATGGGGTAACGTTGCTTGT 59.184 45.455 16.07 3.37 33.89 3.16
37 38 2.162809 GGTTATGGGGTAACGTTGCTTG 59.837 50.000 16.07 0.00 42.95 4.01
38 39 2.224818 TGGTTATGGGGTAACGTTGCTT 60.225 45.455 16.07 2.28 42.95 3.91
39 40 1.351683 TGGTTATGGGGTAACGTTGCT 59.648 47.619 16.07 0.00 42.95 3.91
40 41 1.741145 CTGGTTATGGGGTAACGTTGC 59.259 52.381 11.99 9.89 42.95 4.17
41 42 2.027007 TCCTGGTTATGGGGTAACGTTG 60.027 50.000 11.99 0.00 42.95 4.10
42 43 2.268107 TCCTGGTTATGGGGTAACGTT 58.732 47.619 5.88 5.88 42.95 3.99
43 44 1.955451 TCCTGGTTATGGGGTAACGT 58.045 50.000 0.00 0.00 42.95 3.99
44 45 2.237893 AGTTCCTGGTTATGGGGTAACG 59.762 50.000 0.00 0.00 42.95 3.18
45 46 3.009805 ACAGTTCCTGGTTATGGGGTAAC 59.990 47.826 0.00 0.00 41.61 2.50
46 47 3.009695 CACAGTTCCTGGTTATGGGGTAA 59.990 47.826 0.00 0.00 35.51 2.85
47 48 2.574369 CACAGTTCCTGGTTATGGGGTA 59.426 50.000 0.00 0.00 35.51 3.69
48 49 1.354368 CACAGTTCCTGGTTATGGGGT 59.646 52.381 0.00 0.00 35.51 4.95
49 50 1.340991 CCACAGTTCCTGGTTATGGGG 60.341 57.143 0.00 0.00 35.51 4.96
50 51 1.340991 CCCACAGTTCCTGGTTATGGG 60.341 57.143 8.94 8.94 37.59 4.00
51 52 1.955208 GCCCACAGTTCCTGGTTATGG 60.955 57.143 0.00 0.00 35.51 2.74
52 53 1.271871 TGCCCACAGTTCCTGGTTATG 60.272 52.381 0.00 0.00 35.51 1.90
53 54 1.004745 CTGCCCACAGTTCCTGGTTAT 59.995 52.381 0.00 0.00 39.22 1.89
54 55 0.400213 CTGCCCACAGTTCCTGGTTA 59.600 55.000 0.00 0.00 39.22 2.85
55 56 1.151450 CTGCCCACAGTTCCTGGTT 59.849 57.895 0.00 0.00 39.22 3.67
56 57 2.839098 CTGCCCACAGTTCCTGGT 59.161 61.111 0.00 0.00 39.22 4.00
71 72 4.063689 ACGATCCTATCCTACGTGTACTG 58.936 47.826 0.00 0.00 35.91 2.74
80 81 2.810274 GCACGTGTACGATCCTATCCTA 59.190 50.000 18.38 0.00 43.02 2.94
81 82 1.607628 GCACGTGTACGATCCTATCCT 59.392 52.381 18.38 0.00 43.02 3.24
82 83 1.335810 TGCACGTGTACGATCCTATCC 59.664 52.381 18.38 0.00 43.02 2.59
83 84 2.604855 CCTGCACGTGTACGATCCTATC 60.605 54.545 18.38 0.00 43.02 2.08
84 85 1.337071 CCTGCACGTGTACGATCCTAT 59.663 52.381 18.38 0.00 43.02 2.57
90 91 3.116073 CAATCCTGCACGTGTACGA 57.884 52.632 18.38 12.50 43.02 3.43
110 111 2.844451 GCAAAACGCCACAGAGCCA 61.844 57.895 0.00 0.00 32.94 4.75
111 112 2.050077 GCAAAACGCCACAGAGCC 60.050 61.111 0.00 0.00 32.94 4.70
116 117 0.678395 AATGGATGCAAAACGCCACA 59.322 45.000 0.00 0.00 41.33 4.17
139 141 6.567132 GATGATCACATCGCAAATATGCTTCA 60.567 38.462 0.00 0.00 44.35 3.02
140 142 5.793952 GATGATCACATCGCAAATATGCTTC 59.206 40.000 0.00 0.00 44.35 3.86
141 143 5.696822 GATGATCACATCGCAAATATGCTT 58.303 37.500 0.00 0.00 44.35 3.91
142 144 5.292671 GATGATCACATCGCAAATATGCT 57.707 39.130 0.00 0.00 44.35 3.79
189 194 4.437659 CGAACCAAAACGAAAAACCAGAGA 60.438 41.667 0.00 0.00 0.00 3.10
201 207 2.724358 GCGTGCCGAACCAAAACG 60.724 61.111 0.00 0.00 37.32 3.60
202 208 1.942223 GTGCGTGCCGAACCAAAAC 60.942 57.895 0.00 0.00 27.43 2.43
208 214 2.052237 CAACTGTGCGTGCCGAAC 60.052 61.111 0.00 0.00 35.71 3.95
309 316 4.499188 CCCTAGTTTCTGCATATCGAACGA 60.499 45.833 0.00 0.00 0.00 3.85
383 401 9.351570 TGCAATTTTTGTGTATGTGTATGTATG 57.648 29.630 0.00 0.00 0.00 2.39
605 645 2.981898 AGGGTTATTGTTGGCGTCTAC 58.018 47.619 0.00 0.00 0.00 2.59
606 646 5.599656 AGTATAGGGTTATTGTTGGCGTCTA 59.400 40.000 0.00 0.00 0.00 2.59
814 864 0.101939 GATTAGGTGTCCGGTCCGAC 59.898 60.000 14.39 9.76 0.00 4.79
815 865 1.039233 GGATTAGGTGTCCGGTCCGA 61.039 60.000 14.39 0.00 0.00 4.55
893 943 0.314935 ATTTCACCACTTGCCTTGCG 59.685 50.000 0.00 0.00 0.00 4.85
1320 1381 3.645268 GAGGATGGGCGGCAGGTTT 62.645 63.158 12.47 0.00 0.00 3.27
1423 1484 2.649349 GAGACTAGCTCACGCGCG 60.649 66.667 30.96 30.96 43.38 6.86
1438 1499 8.503196 GTCACATAGTGATAGATACAGTGAGAG 58.497 40.741 2.90 0.00 44.63 3.20
1439 1500 7.445707 GGTCACATAGTGATAGATACAGTGAGA 59.554 40.741 2.90 0.00 44.63 3.27
1467 1528 2.157701 CGAAGCTCGAGTCTGCAGC 61.158 63.158 15.13 4.26 43.74 5.25
1806 1873 1.391157 GCCACTGTGCTTTTGGTCCA 61.391 55.000 1.29 0.00 32.50 4.02
1807 1874 1.363807 GCCACTGTGCTTTTGGTCC 59.636 57.895 1.29 0.00 32.50 4.46
1808 1875 0.249031 GTGCCACTGTGCTTTTGGTC 60.249 55.000 1.29 0.00 32.50 4.02
1809 1876 1.675720 GGTGCCACTGTGCTTTTGGT 61.676 55.000 1.29 0.00 32.50 3.67
1866 1946 8.779096 ACCTACAGCTAATTACTAATACTGGT 57.221 34.615 0.00 0.00 0.00 4.00
1875 1955 8.142551 GCAGTTACATACCTACAGCTAATTACT 58.857 37.037 0.00 0.00 0.00 2.24
1876 1956 8.142551 AGCAGTTACATACCTACAGCTAATTAC 58.857 37.037 0.00 0.00 33.62 1.89
1901 1981 3.305403 CCTCCACACATATGTAGGCGTAG 60.305 52.174 17.56 11.74 36.72 3.51
1902 1982 2.626266 CCTCCACACATATGTAGGCGTA 59.374 50.000 17.56 4.63 36.72 4.42
1904 1984 1.412710 ACCTCCACACATATGTAGGCG 59.587 52.381 18.48 13.50 37.90 5.52
1907 1987 6.049149 CACCTAAACCTCCACACATATGTAG 58.951 44.000 8.32 2.08 36.72 2.74
1909 1989 4.288626 ACACCTAAACCTCCACACATATGT 59.711 41.667 1.41 1.41 40.80 2.29
1910 1990 4.843728 ACACCTAAACCTCCACACATATG 58.156 43.478 0.00 0.00 0.00 1.78
1911 1991 6.214819 AGTTACACCTAAACCTCCACACATAT 59.785 38.462 0.00 0.00 0.00 1.78
1912 1992 5.544948 AGTTACACCTAAACCTCCACACATA 59.455 40.000 0.00 0.00 0.00 2.29
1913 1993 4.349930 AGTTACACCTAAACCTCCACACAT 59.650 41.667 0.00 0.00 0.00 3.21
1955 2068 1.272037 ACACACACATGCATCCATCCA 60.272 47.619 0.00 0.00 0.00 3.41
1956 2069 1.133598 CACACACACATGCATCCATCC 59.866 52.381 0.00 0.00 0.00 3.51
1957 2070 1.814394 ACACACACACATGCATCCATC 59.186 47.619 0.00 0.00 0.00 3.51
1958 2071 1.913778 ACACACACACATGCATCCAT 58.086 45.000 0.00 0.00 0.00 3.41
1959 2072 2.150390 GTACACACACACATGCATCCA 58.850 47.619 0.00 0.00 0.00 3.41
1960 2073 1.128507 CGTACACACACACATGCATCC 59.871 52.381 0.00 0.00 0.00 3.51
1961 2074 1.798223 ACGTACACACACACATGCATC 59.202 47.619 0.00 0.00 0.00 3.91
1962 2075 1.530720 CACGTACACACACACATGCAT 59.469 47.619 0.00 0.00 0.00 3.96
1963 2076 0.933796 CACGTACACACACACATGCA 59.066 50.000 0.00 0.00 0.00 3.96
1964 2077 0.384230 GCACGTACACACACACATGC 60.384 55.000 0.00 0.00 0.00 4.06
1965 2078 0.933796 TGCACGTACACACACACATG 59.066 50.000 0.00 0.00 0.00 3.21
1966 2079 1.217001 CTGCACGTACACACACACAT 58.783 50.000 0.00 0.00 0.00 3.21
1967 2080 0.808060 CCTGCACGTACACACACACA 60.808 55.000 0.00 0.00 0.00 3.72
1968 2081 1.931551 CCTGCACGTACACACACAC 59.068 57.895 0.00 0.00 0.00 3.82
1969 2082 1.885388 GCCTGCACGTACACACACA 60.885 57.895 0.00 0.00 0.00 3.72
1970 2083 1.594293 AGCCTGCACGTACACACAC 60.594 57.895 0.00 0.00 0.00 3.82
1971 2084 1.594021 CAGCCTGCACGTACACACA 60.594 57.895 0.00 0.00 0.00 3.72
1972 2085 2.317609 CCAGCCTGCACGTACACAC 61.318 63.158 0.00 0.00 0.00 3.82
1973 2086 2.030412 CCAGCCTGCACGTACACA 59.970 61.111 0.00 0.00 0.00 3.72
1974 2087 2.742372 CCCAGCCTGCACGTACAC 60.742 66.667 0.00 0.00 0.00 2.90
1975 2088 4.697756 GCCCAGCCTGCACGTACA 62.698 66.667 0.00 0.00 0.00 2.90
1976 2089 3.901797 AAGCCCAGCCTGCACGTAC 62.902 63.158 0.00 0.00 0.00 3.67
2148 2261 2.621070 AGATACTGGACCTGGTGTGTT 58.379 47.619 2.82 0.00 0.00 3.32
2191 2307 7.701445 AGATGCAAGTGTCAATTATCTTTAGC 58.299 34.615 0.00 0.00 0.00 3.09
2193 2309 9.013229 ACAAGATGCAAGTGTCAATTATCTTTA 57.987 29.630 7.86 0.00 32.75 1.85
2197 2313 7.698130 GGTAACAAGATGCAAGTGTCAATTATC 59.302 37.037 0.00 0.00 0.00 1.75
2325 2492 5.560148 CACGGTGATGCAAAATTCTACTAC 58.440 41.667 0.74 0.00 0.00 2.73
2341 2508 0.109458 GACAGACATACGCACGGTGA 60.109 55.000 13.29 0.00 0.00 4.02
2373 2544 5.008118 GGCCTGACTGATAATAAGTTCTTGC 59.992 44.000 0.00 0.00 0.00 4.01
2387 2558 1.879380 CGTTTTTCATGGCCTGACTGA 59.121 47.619 3.32 0.00 32.17 3.41
2388 2559 1.068333 CCGTTTTTCATGGCCTGACTG 60.068 52.381 3.32 0.00 32.17 3.51
2389 2560 1.202879 TCCGTTTTTCATGGCCTGACT 60.203 47.619 3.32 0.00 32.17 3.41
2390 2561 1.068541 GTCCGTTTTTCATGGCCTGAC 60.069 52.381 3.32 0.00 32.17 3.51
2391 2562 1.243902 GTCCGTTTTTCATGGCCTGA 58.756 50.000 3.32 2.06 0.00 3.86
2392 2563 0.109781 CGTCCGTTTTTCATGGCCTG 60.110 55.000 3.32 0.00 0.00 4.85
2414 2585 1.151777 GCACCGGTGTCATCATACGG 61.152 60.000 33.92 6.10 45.51 4.02
2415 2586 0.459411 TGCACCGGTGTCATCATACG 60.459 55.000 33.92 6.66 0.00 3.06
2417 2588 1.952193 CATGCACCGGTGTCATCATA 58.048 50.000 33.92 13.22 0.00 2.15
2465 2636 4.258457 AGTACTCTAGAGGATTGTGCCT 57.742 45.455 23.50 4.74 42.17 4.75
2473 2645 3.395604 AGCCACCTAGTACTCTAGAGGA 58.604 50.000 23.50 13.25 44.52 3.71
2479 2651 8.165267 AGACATATATAGCCACCTAGTACTCT 57.835 38.462 0.00 0.00 0.00 3.24
2481 2653 9.281680 TCTAGACATATATAGCCACCTAGTACT 57.718 37.037 0.00 0.00 0.00 2.73
2485 2657 6.483974 CGGTCTAGACATATATAGCCACCTAG 59.516 46.154 23.91 0.00 0.00 3.02
2486 2658 6.354938 CGGTCTAGACATATATAGCCACCTA 58.645 44.000 23.91 0.00 0.00 3.08
2487 2659 5.194432 CGGTCTAGACATATATAGCCACCT 58.806 45.833 23.91 0.00 0.00 4.00
2488 2660 4.338682 CCGGTCTAGACATATATAGCCACC 59.661 50.000 23.91 1.94 0.00 4.61
2489 2661 4.202030 GCCGGTCTAGACATATATAGCCAC 60.202 50.000 23.91 1.61 0.00 5.01
2532 2704 2.359850 TGTCCTTCACGGGCATGC 60.360 61.111 9.90 9.90 44.09 4.06
2541 2713 2.547855 CGTGTCATGTTCCTGTCCTTCA 60.548 50.000 0.00 0.00 0.00 3.02
2556 2728 4.400109 GAGCTCGCCGTCGTGTCA 62.400 66.667 0.00 0.00 36.96 3.58
2693 2881 2.990642 CATGCAATGGTCGATCGGA 58.009 52.632 16.41 0.00 41.79 4.55
2766 2954 3.328505 CAAATCAAGCCATCCAACCAAC 58.671 45.455 0.00 0.00 0.00 3.77
2938 3132 4.085357 AGGCAATCGAAAGCATATGGTA 57.915 40.909 8.04 0.00 0.00 3.25
2939 3133 2.936202 AGGCAATCGAAAGCATATGGT 58.064 42.857 13.45 0.40 0.00 3.55
2972 3166 2.668279 GCATGAGGTGTTTAACTTGCGG 60.668 50.000 0.00 0.00 0.00 5.69
2974 3168 3.923017 AGCATGAGGTGTTTAACTTGC 57.077 42.857 0.00 0.00 0.00 4.01
2982 3176 2.226437 CGCAAGTTAAGCATGAGGTGTT 59.774 45.455 0.00 0.00 0.00 3.32
2983 3177 1.806542 CGCAAGTTAAGCATGAGGTGT 59.193 47.619 0.00 0.00 0.00 4.16
2984 3178 1.466360 GCGCAAGTTAAGCATGAGGTG 60.466 52.381 0.30 0.00 41.68 4.00
2985 3179 0.804989 GCGCAAGTTAAGCATGAGGT 59.195 50.000 0.30 0.00 41.68 3.85
2986 3180 0.247814 CGCGCAAGTTAAGCATGAGG 60.248 55.000 8.75 0.00 41.68 3.86
2987 3181 0.443869 ACGCGCAAGTTAAGCATGAG 59.556 50.000 5.73 0.00 41.68 2.90
2988 3182 0.165727 CACGCGCAAGTTAAGCATGA 59.834 50.000 5.73 0.00 41.68 3.07
2989 3183 0.165727 TCACGCGCAAGTTAAGCATG 59.834 50.000 5.73 0.00 41.68 4.06
2990 3184 0.165944 GTCACGCGCAAGTTAAGCAT 59.834 50.000 5.73 0.00 41.68 3.79
2991 3185 1.154814 TGTCACGCGCAAGTTAAGCA 61.155 50.000 5.73 0.00 41.68 3.91
2992 3186 0.041663 TTGTCACGCGCAAGTTAAGC 60.042 50.000 5.73 0.00 41.68 3.09
2993 3187 2.376915 TTTGTCACGCGCAAGTTAAG 57.623 45.000 5.73 0.00 41.68 1.85
2994 3188 2.826979 TTTTGTCACGCGCAAGTTAA 57.173 40.000 5.73 0.00 41.68 2.01
2995 3189 2.350007 GGATTTTGTCACGCGCAAGTTA 60.350 45.455 5.73 0.00 41.68 2.24
3034 3244 4.703575 CCACTTACTAGTACTGCCACACTA 59.296 45.833 5.39 0.00 31.96 2.74
3047 3263 3.786635 AGATTCTTGCGCCACTTACTAG 58.213 45.455 4.18 0.00 0.00 2.57
3071 3287 3.000727 CACGTCATTAGTTTCCCAGACC 58.999 50.000 0.00 0.00 0.00 3.85
3072 3288 2.415512 GCACGTCATTAGTTTCCCAGAC 59.584 50.000 0.00 0.00 0.00 3.51
3078 3294 5.106475 TGTTATTGGGCACGTCATTAGTTTC 60.106 40.000 0.00 0.00 0.00 2.78
3105 3321 3.945921 GTCCTAGTTTATGCACCCCTTTC 59.054 47.826 0.00 0.00 0.00 2.62
3140 3356 0.106708 CGTGGATGGATGGGTCGATT 59.893 55.000 0.00 0.00 0.00 3.34
3161 3381 2.304180 GAGGACGATCCATGGATCCATT 59.696 50.000 37.70 26.49 45.95 3.16
3181 3401 3.306919 GCAAGAAAAGGCCCAATGATTGA 60.307 43.478 6.76 0.00 0.00 2.57
3226 3446 5.405571 GGACGATTATAACATGCTACTGGTG 59.594 44.000 0.00 0.00 0.00 4.17
3326 3556 3.006537 GCTTCTCATGCATGGCCATTATT 59.993 43.478 25.97 0.00 0.00 1.40
3327 3557 2.561419 GCTTCTCATGCATGGCCATTAT 59.439 45.455 25.97 11.09 0.00 1.28
3336 3567 3.870538 TGGGATTAGCTTCTCATGCAT 57.129 42.857 0.00 0.00 0.00 3.96
3341 3572 3.696051 GCACAAATGGGATTAGCTTCTCA 59.304 43.478 0.00 0.00 0.00 3.27
3346 3577 1.780503 GGGCACAAATGGGATTAGCT 58.219 50.000 0.00 0.00 0.00 3.32
3352 3583 2.282816 CACCGGGCACAAATGGGA 60.283 61.111 6.32 0.00 0.00 4.37
3364 3595 2.009774 CCTTGCTATTCACTTCACCGG 58.990 52.381 0.00 0.00 0.00 5.28
3367 3598 4.265073 ACCATCCTTGCTATTCACTTCAC 58.735 43.478 0.00 0.00 0.00 3.18
3368 3599 4.517285 GACCATCCTTGCTATTCACTTCA 58.483 43.478 0.00 0.00 0.00 3.02
3369 3600 3.879892 GGACCATCCTTGCTATTCACTTC 59.120 47.826 0.00 0.00 32.53 3.01
3370 3601 3.266772 TGGACCATCCTTGCTATTCACTT 59.733 43.478 0.00 0.00 37.46 3.16
3371 3602 2.846206 TGGACCATCCTTGCTATTCACT 59.154 45.455 0.00 0.00 37.46 3.41
3372 3603 3.281727 TGGACCATCCTTGCTATTCAC 57.718 47.619 0.00 0.00 37.46 3.18
3373 3604 3.435457 CCATGGACCATCCTTGCTATTCA 60.435 47.826 5.56 0.00 39.57 2.57
3374 3605 3.152341 CCATGGACCATCCTTGCTATTC 58.848 50.000 5.56 0.00 39.57 1.75
3375 3606 2.785269 TCCATGGACCATCCTTGCTATT 59.215 45.455 11.44 0.00 39.57 1.73
3376 3607 2.421725 TCCATGGACCATCCTTGCTAT 58.578 47.619 11.44 0.00 39.57 2.97
3377 3608 1.891933 TCCATGGACCATCCTTGCTA 58.108 50.000 11.44 0.00 39.57 3.49
3379 3610 1.325355 CATCCATGGACCATCCTTGC 58.675 55.000 18.99 0.00 39.57 4.01
3380 3611 1.325355 GCATCCATGGACCATCCTTG 58.675 55.000 18.99 10.86 40.32 3.61
3382 3613 1.155323 ATGCATCCATGGACCATCCT 58.845 50.000 18.99 0.00 37.46 3.24
3384 3615 3.021695 CCATATGCATCCATGGACCATC 58.978 50.000 25.23 13.09 43.80 3.51
3396 3643 1.885359 GCACTAGCCAGCCATATGCAT 60.885 52.381 3.79 3.79 37.30 3.96
3416 3663 2.678190 GCAGCTAAACACTGGGTCTAGG 60.678 54.545 0.00 0.00 35.62 3.02
3484 3731 5.987347 CAGCACAAAATTGTCTTTCCTTCAT 59.013 36.000 0.00 0.00 39.91 2.57
3487 3734 5.105392 TCACAGCACAAAATTGTCTTTCCTT 60.105 36.000 0.00 0.00 39.91 3.36
3681 3952 6.069440 AGGAAGATGACAATGGAAGTATGGAA 60.069 38.462 0.00 0.00 0.00 3.53
3694 3965 2.493675 CAGACGAGGAGGAAGATGACAA 59.506 50.000 0.00 0.00 0.00 3.18
3721 3992 7.512297 CATGTTATTTTTGCATGGTGTTCTTC 58.488 34.615 0.00 0.00 37.08 2.87
3722 3993 6.073112 GCATGTTATTTTTGCATGGTGTTCTT 60.073 34.615 0.00 0.00 40.03 2.52
3723 3994 5.409214 GCATGTTATTTTTGCATGGTGTTCT 59.591 36.000 0.00 0.00 40.03 3.01
3741 4012 5.543507 TTGGATTTGTGTAAAGGCATGTT 57.456 34.783 0.00 0.00 0.00 2.71
3743 4014 6.833839 CAAATTGGATTTGTGTAAAGGCATG 58.166 36.000 5.46 0.00 43.47 4.06
3759 4037 4.224594 AGAGAGTGCAGAGATCAAATTGGA 59.775 41.667 0.00 0.00 0.00 3.53
3776 4054 9.985730 GTCACATATACTACTGTACTAGAGAGT 57.014 37.037 0.00 0.00 39.92 3.24
3782 4060 9.128404 CCCAAAGTCACATATACTACTGTACTA 57.872 37.037 0.00 0.00 0.00 1.82
3783 4061 7.069578 CCCCAAAGTCACATATACTACTGTACT 59.930 40.741 0.00 0.00 0.00 2.73
3784 4062 7.208080 CCCCAAAGTCACATATACTACTGTAC 58.792 42.308 0.00 0.00 0.00 2.90
3785 4063 6.325545 CCCCCAAAGTCACATATACTACTGTA 59.674 42.308 0.00 0.00 0.00 2.74
3786 4064 5.130477 CCCCCAAAGTCACATATACTACTGT 59.870 44.000 0.00 0.00 0.00 3.55
3787 4065 5.611374 CCCCCAAAGTCACATATACTACTG 58.389 45.833 0.00 0.00 0.00 2.74
3879 4210 3.698040 CTGTCTGGCTCCAAATTATGCTT 59.302 43.478 0.00 0.00 0.00 3.91
3937 4271 2.030562 CGGGTCAAGCGTTGTCCT 59.969 61.111 11.41 0.00 38.64 3.85
3953 4287 0.524392 CAAGCTCTAGTCAGGACGCG 60.524 60.000 3.53 3.53 36.20 6.01
3956 4290 3.675698 CGAAAACAAGCTCTAGTCAGGAC 59.324 47.826 0.00 0.00 0.00 3.85
3966 4303 0.517316 ACCGATGCGAAAACAAGCTC 59.483 50.000 0.00 0.00 0.00 4.09
4002 4339 0.107066 TCTGGTCCGATGCATGCATT 60.107 50.000 32.60 17.42 36.70 3.56
4033 4370 2.269241 CAGGTCGGCTCTTTCCCC 59.731 66.667 0.00 0.00 0.00 4.81
4108 4445 9.064706 CAGGCATCTCATTTCAGATTAGTTAAT 57.935 33.333 0.00 0.00 30.07 1.40
4208 4551 7.823745 ACATTGGAATACTCAAGAACAAGTT 57.176 32.000 0.00 0.00 0.00 2.66
4209 4552 7.823745 AACATTGGAATACTCAAGAACAAGT 57.176 32.000 0.00 0.00 0.00 3.16
4210 4553 9.185192 GAAAACATTGGAATACTCAAGAACAAG 57.815 33.333 0.00 0.00 0.00 3.16
4211 4554 7.860373 CGAAAACATTGGAATACTCAAGAACAA 59.140 33.333 0.00 0.00 0.00 2.83
4213 4556 7.360361 ACGAAAACATTGGAATACTCAAGAAC 58.640 34.615 0.00 0.00 0.00 3.01
4214 4557 7.227711 TGACGAAAACATTGGAATACTCAAGAA 59.772 33.333 0.00 0.00 0.00 2.52
4216 4559 6.898041 TGACGAAAACATTGGAATACTCAAG 58.102 36.000 0.00 0.00 0.00 3.02
4217 4560 6.869315 TGACGAAAACATTGGAATACTCAA 57.131 33.333 0.00 0.00 0.00 3.02
4221 4582 7.201232 CGAAACATGACGAAAACATTGGAATAC 60.201 37.037 0.00 0.00 0.00 1.89
4233 4594 1.397945 GCGCTTCGAAACATGACGAAA 60.398 47.619 19.93 10.08 45.37 3.46
4247 4608 4.849310 TATGGCCGGGTGCGCTTC 62.849 66.667 9.73 1.18 42.61 3.86
4255 4616 3.100545 GGCATATCATATGGCCGGG 57.899 57.895 18.53 0.00 38.48 5.73
4341 4782 4.455606 CCTCAAAGTTCAGACCAAGAAGT 58.544 43.478 0.00 0.00 0.00 3.01
4389 4831 7.414540 GCAAGAAATGGTCTGTTAGGTAATCAG 60.415 40.741 0.00 0.00 36.40 2.90
4396 4838 3.119708 GCAGCAAGAAATGGTCTGTTAGG 60.120 47.826 0.00 0.00 37.77 2.69
4475 4917 8.413229 TGCCCAAATAAAGCATAAGATTAGTTC 58.587 33.333 0.00 0.00 0.00 3.01
4489 4931 3.129988 CCTCTTGCTCTGCCCAAATAAAG 59.870 47.826 0.00 0.00 0.00 1.85
4492 4934 1.683011 GCCTCTTGCTCTGCCCAAATA 60.683 52.381 0.00 0.00 36.87 1.40
4565 5007 2.128507 GTAGACCAGGAGGCTCCCG 61.129 68.421 29.62 20.10 37.19 5.14
4595 5037 2.126914 TTTGAACGCCATGGTTTTCG 57.873 45.000 14.67 10.81 0.00 3.46
4616 5058 5.372343 TGAATGTATATGGGTTGCTCACT 57.628 39.130 0.00 0.00 0.00 3.41
4631 5073 5.297029 TGGAACGAATGTTGTGTTGAATGTA 59.703 36.000 0.00 0.00 38.78 2.29
4632 5074 4.097135 TGGAACGAATGTTGTGTTGAATGT 59.903 37.500 0.00 0.00 38.78 2.71
4658 5101 5.351740 TCAGTCAGTTACTCACTCGACATAG 59.648 44.000 0.00 0.00 35.76 2.23
4667 5110 5.631512 GTCAGTCATTCAGTCAGTTACTCAC 59.368 44.000 0.00 0.00 35.76 3.51
4671 5114 3.365220 GCGTCAGTCATTCAGTCAGTTAC 59.635 47.826 0.00 0.00 0.00 2.50
4673 5116 2.408050 GCGTCAGTCATTCAGTCAGTT 58.592 47.619 0.00 0.00 0.00 3.16
4676 5119 0.388520 CGGCGTCAGTCATTCAGTCA 60.389 55.000 0.00 0.00 0.00 3.41
4790 5233 0.036388 GTGATGAGGCCGGTCTTCAA 60.036 55.000 11.49 0.00 33.69 2.69
4873 5333 5.525378 GGTGTGAGATATTCAATCTTTCGCT 59.475 40.000 0.00 0.00 37.61 4.93
4913 5373 2.412323 CCTTCCTGCGCATGTGCAT 61.412 57.895 32.36 0.00 45.26 3.96
5025 5485 0.827368 GGTAGCAGGAGGTGAAGGAG 59.173 60.000 0.00 0.00 0.00 3.69
5076 5536 2.961669 GCACCCGGCGTTGTAGTTG 61.962 63.158 6.01 0.00 0.00 3.16
5493 5953 0.541863 AGTTGGCGAAGTAGATGGGG 59.458 55.000 0.00 0.00 0.00 4.96
5667 6150 5.419542 TGTGCAGTGTAATTGGATAGAGAC 58.580 41.667 0.00 0.00 0.00 3.36
5671 6154 6.252967 TGTTTGTGCAGTGTAATTGGATAG 57.747 37.500 0.00 0.00 0.00 2.08
5673 6156 5.477984 AGATGTTTGTGCAGTGTAATTGGAT 59.522 36.000 0.00 0.00 0.00 3.41
5675 6158 5.125100 AGATGTTTGTGCAGTGTAATTGG 57.875 39.130 0.00 0.00 0.00 3.16
5678 6161 3.436704 CCGAGATGTTTGTGCAGTGTAAT 59.563 43.478 0.00 0.00 0.00 1.89
5679 6162 2.805671 CCGAGATGTTTGTGCAGTGTAA 59.194 45.455 0.00 0.00 0.00 2.41
5680 6163 2.412870 CCGAGATGTTTGTGCAGTGTA 58.587 47.619 0.00 0.00 0.00 2.90
5681 6164 1.229428 CCGAGATGTTTGTGCAGTGT 58.771 50.000 0.00 0.00 0.00 3.55
5682 6165 0.518636 CCCGAGATGTTTGTGCAGTG 59.481 55.000 0.00 0.00 0.00 3.66
5683 6166 1.237285 GCCCGAGATGTTTGTGCAGT 61.237 55.000 0.00 0.00 0.00 4.40
5684 6167 1.236616 TGCCCGAGATGTTTGTGCAG 61.237 55.000 0.00 0.00 0.00 4.41
5685 6168 1.228094 TGCCCGAGATGTTTGTGCA 60.228 52.632 0.00 0.00 0.00 4.57
5686 6169 1.210155 GTGCCCGAGATGTTTGTGC 59.790 57.895 0.00 0.00 0.00 4.57
5687 6170 0.518636 CAGTGCCCGAGATGTTTGTG 59.481 55.000 0.00 0.00 0.00 3.33
5688 6171 0.606401 CCAGTGCCCGAGATGTTTGT 60.606 55.000 0.00 0.00 0.00 2.83
5689 6172 0.321564 TCCAGTGCCCGAGATGTTTG 60.322 55.000 0.00 0.00 0.00 2.93
5690 6173 0.620556 ATCCAGTGCCCGAGATGTTT 59.379 50.000 0.00 0.00 0.00 2.83
5691 6174 0.179000 GATCCAGTGCCCGAGATGTT 59.821 55.000 0.00 0.00 0.00 2.71
5692 6175 0.689080 AGATCCAGTGCCCGAGATGT 60.689 55.000 0.00 0.00 0.00 3.06
5693 6176 0.249784 CAGATCCAGTGCCCGAGATG 60.250 60.000 0.00 0.00 0.00 2.90
5694 6177 0.397675 TCAGATCCAGTGCCCGAGAT 60.398 55.000 0.00 0.00 0.00 2.75
5695 6178 0.614697 TTCAGATCCAGTGCCCGAGA 60.615 55.000 0.00 0.00 0.00 4.04
5696 6179 0.250234 TTTCAGATCCAGTGCCCGAG 59.750 55.000 0.00 0.00 0.00 4.63
5697 6180 0.036388 GTTTCAGATCCAGTGCCCGA 60.036 55.000 0.00 0.00 0.00 5.14
5698 6181 0.036010 AGTTTCAGATCCAGTGCCCG 60.036 55.000 0.00 0.00 0.00 6.13
5718 6201 1.075425 CAGCTGCGGAGAGAAACGAG 61.075 60.000 8.65 0.00 0.00 4.18
5739 6222 0.673333 CGCTGGTGTCAATGCTACCA 60.673 55.000 7.89 7.89 41.90 3.25
5742 6225 1.078497 CCCGCTGGTGTCAATGCTA 60.078 57.895 0.00 0.00 0.00 3.49
5748 6231 3.680786 CTCGTCCCGCTGGTGTCA 61.681 66.667 0.00 0.00 0.00 3.58
5790 6273 1.988982 GAATCCCCCTCCTGTCCAGC 61.989 65.000 0.00 0.00 0.00 4.85
5826 6309 5.697633 TCTTCAGAAAGATGGCAATTTTTGC 59.302 36.000 11.77 3.65 44.88 3.68
5853 6336 5.504665 GGTTAATGACAGAGCATGCACATAC 60.505 44.000 21.98 8.74 31.77 2.39
5857 6340 3.012518 AGGTTAATGACAGAGCATGCAC 58.987 45.455 21.98 14.59 0.00 4.57
5860 6343 3.181493 GCCAAGGTTAATGACAGAGCATG 60.181 47.826 0.00 0.00 0.00 4.06
5862 6345 2.040278 AGCCAAGGTTAATGACAGAGCA 59.960 45.455 0.00 0.00 0.00 4.26
5863 6346 2.421424 CAGCCAAGGTTAATGACAGAGC 59.579 50.000 0.00 0.00 0.00 4.09
5864 6347 3.942829 TCAGCCAAGGTTAATGACAGAG 58.057 45.455 0.00 0.00 0.00 3.35
5865 6348 4.574674 ATCAGCCAAGGTTAATGACAGA 57.425 40.909 0.00 0.00 0.00 3.41
5866 6349 5.416952 AGAAATCAGCCAAGGTTAATGACAG 59.583 40.000 0.00 0.00 0.00 3.51
5873 6358 4.335416 CAAGGAGAAATCAGCCAAGGTTA 58.665 43.478 0.00 0.00 0.00 2.85
5878 6363 2.978156 ACCAAGGAGAAATCAGCCAA 57.022 45.000 0.00 0.00 0.00 4.52
5920 6405 2.079170 TCTTCATGATCTCGCTCCCT 57.921 50.000 0.00 0.00 0.00 4.20
6073 6558 2.283298 CCCAATCAGACCATGTTCTCG 58.717 52.381 0.00 0.00 0.00 4.04
6098 6583 2.313317 ACAACTCAACTCAGGTCGGTA 58.687 47.619 0.00 0.00 0.00 4.02
6099 6584 1.120530 ACAACTCAACTCAGGTCGGT 58.879 50.000 0.00 0.00 0.00 4.69
6101 6586 4.116961 TGTTAACAACTCAACTCAGGTCG 58.883 43.478 5.64 0.00 0.00 4.79
6143 6628 6.412362 ACAATAGCTCGAGATGTTTATCCT 57.588 37.500 18.75 2.44 33.64 3.24
6145 6630 7.539366 GGAGTACAATAGCTCGAGATGTTTATC 59.461 40.741 18.75 9.01 32.83 1.75
6191 6676 8.087750 ACAAAAACGGTGATATTCATTTCATGT 58.912 29.630 0.00 0.00 0.00 3.21
6259 6744 6.460781 TCATTTGTTCACATTACCGACTACT 58.539 36.000 0.00 0.00 0.00 2.57
6260 6745 6.715344 TCATTTGTTCACATTACCGACTAC 57.285 37.500 0.00 0.00 0.00 2.73
6342 6827 5.756195 TTGTTATTAGCAGTGATGGCATC 57.244 39.130 20.52 20.52 0.00 3.91
6343 6828 6.528537 TTTTGTTATTAGCAGTGATGGCAT 57.471 33.333 0.00 0.00 0.00 4.40
6345 6830 7.201548 CCAAATTTTGTTATTAGCAGTGATGGC 60.202 37.037 8.26 0.00 0.00 4.40
6346 6831 7.278424 CCCAAATTTTGTTATTAGCAGTGATGG 59.722 37.037 8.26 0.00 0.00 3.51
6347 6832 8.034215 TCCCAAATTTTGTTATTAGCAGTGATG 58.966 33.333 8.26 0.00 0.00 3.07
6348 6833 8.133024 TCCCAAATTTTGTTATTAGCAGTGAT 57.867 30.769 8.26 0.00 0.00 3.06
6349 6834 7.450014 TCTCCCAAATTTTGTTATTAGCAGTGA 59.550 33.333 8.26 0.00 0.00 3.41
6352 6837 7.601856 TGTCTCCCAAATTTTGTTATTAGCAG 58.398 34.615 8.26 0.00 0.00 4.24
6356 6841 9.527157 TGATCTGTCTCCCAAATTTTGTTATTA 57.473 29.630 8.26 0.00 0.00 0.98
6359 6844 7.230747 TCTGATCTGTCTCCCAAATTTTGTTA 58.769 34.615 8.26 0.00 0.00 2.41
6362 6847 6.579666 TTCTGATCTGTCTCCCAAATTTTG 57.420 37.500 1.99 1.99 0.00 2.44
6363 6848 7.787623 ATTTCTGATCTGTCTCCCAAATTTT 57.212 32.000 0.00 0.00 0.00 1.82
6364 6849 7.890127 TGTATTTCTGATCTGTCTCCCAAATTT 59.110 33.333 0.00 0.00 0.00 1.82
6366 6851 6.825721 GTGTATTTCTGATCTGTCTCCCAAAT 59.174 38.462 0.00 0.00 0.00 2.32
6368 6853 5.485353 AGTGTATTTCTGATCTGTCTCCCAA 59.515 40.000 0.00 0.00 0.00 4.12
6369 6854 5.026121 AGTGTATTTCTGATCTGTCTCCCA 58.974 41.667 0.00 0.00 0.00 4.37
6370 6855 5.606348 AGTGTATTTCTGATCTGTCTCCC 57.394 43.478 0.00 0.00 0.00 4.30
6374 6891 5.871524 TCTGCAAGTGTATTTCTGATCTGTC 59.128 40.000 0.00 0.00 33.76 3.51
6412 6929 9.554395 TCATATGTCTGTTAACTTTTCTGTTCA 57.446 29.630 7.22 0.00 0.00 3.18
6430 6948 5.720371 ATACTCTCAGTGCCTCATATGTC 57.280 43.478 1.90 0.00 0.00 3.06
6431 6949 7.007116 TCTTATACTCTCAGTGCCTCATATGT 58.993 38.462 1.90 0.00 0.00 2.29
6432 6950 7.176515 AGTCTTATACTCTCAGTGCCTCATATG 59.823 40.741 0.00 0.00 30.33 1.78
6433 6951 7.237982 AGTCTTATACTCTCAGTGCCTCATAT 58.762 38.462 0.00 0.00 30.33 1.78
6434 6952 6.606069 AGTCTTATACTCTCAGTGCCTCATA 58.394 40.000 0.00 0.00 30.33 2.15
6435 6953 5.454062 AGTCTTATACTCTCAGTGCCTCAT 58.546 41.667 0.00 0.00 30.33 2.90
6436 6954 4.861196 AGTCTTATACTCTCAGTGCCTCA 58.139 43.478 0.00 0.00 30.33 3.86
6437 6955 6.059484 AGTAGTCTTATACTCTCAGTGCCTC 58.941 44.000 0.00 0.00 39.80 4.70
6438 6956 6.008696 AGTAGTCTTATACTCTCAGTGCCT 57.991 41.667 0.00 0.00 39.80 4.75
6439 6957 7.804843 TTAGTAGTCTTATACTCTCAGTGCC 57.195 40.000 0.00 0.00 39.80 5.01
6449 6967 9.890352 CCGACTTGGTTATTAGTAGTCTTATAC 57.110 37.037 0.00 0.00 34.51 1.47
6450 6968 8.571336 GCCGACTTGGTTATTAGTAGTCTTATA 58.429 37.037 0.00 0.00 41.21 0.98
6451 6969 7.432059 GCCGACTTGGTTATTAGTAGTCTTAT 58.568 38.462 0.00 0.00 41.21 1.73
6452 6970 6.458751 CGCCGACTTGGTTATTAGTAGTCTTA 60.459 42.308 0.00 0.00 41.21 2.10
6453 6971 5.658468 GCCGACTTGGTTATTAGTAGTCTT 58.342 41.667 0.00 0.00 41.21 3.01
6461 6979 5.242171 TGATCTATCGCCGACTTGGTTATTA 59.758 40.000 0.00 0.00 41.21 0.98
6471 6989 2.160022 GGTACTCTGATCTATCGCCGAC 59.840 54.545 0.00 0.00 0.00 4.79
6473 6991 2.152016 TGGTACTCTGATCTATCGCCG 58.848 52.381 0.00 0.00 0.00 6.46
6475 6993 5.220510 CGATACTGGTACTCTGATCTATCGC 60.221 48.000 0.00 0.00 0.00 4.58
6477 6995 7.101054 AGTCGATACTGGTACTCTGATCTATC 58.899 42.308 0.00 0.00 33.57 2.08
6478 6996 7.011499 AGTCGATACTGGTACTCTGATCTAT 57.989 40.000 0.00 0.00 33.57 1.98
6479 6997 6.422344 AGTCGATACTGGTACTCTGATCTA 57.578 41.667 0.00 0.00 33.57 1.98
6489 7018 5.657745 TGGAATTTGGTAGTCGATACTGGTA 59.342 40.000 0.00 0.00 36.36 3.25
6491 7020 5.018539 TGGAATTTGGTAGTCGATACTGG 57.981 43.478 0.00 0.00 36.36 4.00
6498 7027 4.513442 TCCATCTTGGAATTTGGTAGTCG 58.487 43.478 0.00 0.00 45.00 4.18
6532 7061 9.886132 TCACTCCCTTTTTACTGTATTTAGATC 57.114 33.333 0.00 0.00 0.00 2.75
6533 7062 9.892130 CTCACTCCCTTTTTACTGTATTTAGAT 57.108 33.333 0.00 0.00 0.00 1.98
6535 7064 9.720769 TTCTCACTCCCTTTTTACTGTATTTAG 57.279 33.333 0.00 0.00 0.00 1.85
6559 7088 9.294614 AGAATGCTTCTTTCAGGGATATAATTC 57.705 33.333 0.00 0.00 36.36 2.17
6618 7147 0.109532 TGTGATTCCGTTGCCCTTCA 59.890 50.000 0.00 0.00 0.00 3.02
6634 7163 5.143660 TGTTACGAATCGAAGCATTTTGTG 58.856 37.500 10.55 0.00 0.00 3.33
6683 7212 0.253160 TGAGGCAATGTCCCCCTAGT 60.253 55.000 0.00 0.00 0.00 2.57
6684 7213 1.143813 ATGAGGCAATGTCCCCCTAG 58.856 55.000 0.00 0.00 0.00 3.02
6685 7214 1.607225 AATGAGGCAATGTCCCCCTA 58.393 50.000 0.00 0.00 0.00 3.53
6686 7215 0.712380 AAATGAGGCAATGTCCCCCT 59.288 50.000 0.00 0.00 0.00 4.79
6705 7234 9.364989 CATTCAGAGTTTTGTCCTTGTTAAAAA 57.635 29.630 0.00 0.00 0.00 1.94
6706 7235 7.491048 GCATTCAGAGTTTTGTCCTTGTTAAAA 59.509 33.333 0.00 0.00 0.00 1.52
6707 7236 6.978080 GCATTCAGAGTTTTGTCCTTGTTAAA 59.022 34.615 0.00 0.00 0.00 1.52
6708 7237 6.096141 TGCATTCAGAGTTTTGTCCTTGTTAA 59.904 34.615 0.00 0.00 0.00 2.01
6709 7238 5.592282 TGCATTCAGAGTTTTGTCCTTGTTA 59.408 36.000 0.00 0.00 0.00 2.41
6745 7274 7.922837 TGTAATGAGTTGCATGATGATGTTAG 58.077 34.615 0.00 0.00 37.28 2.34
6752 7281 6.537660 TCTCTTCTGTAATGAGTTGCATGATG 59.462 38.462 0.00 0.00 37.28 3.07
6763 7292 8.178313 TGTCTTTAGTGTCTCTTCTGTAATGA 57.822 34.615 0.00 0.00 0.00 2.57
6778 7307 3.499537 TGCAGCAAGTGATGTCTTTAGTG 59.500 43.478 0.00 0.00 33.30 2.74
6835 7364 0.390124 ACCGTTTCGTTCTGTAGGCA 59.610 50.000 0.00 0.00 0.00 4.75
6863 7392 1.732683 GCGCCCCAAAACAATGACG 60.733 57.895 0.00 0.00 0.00 4.35
6986 7515 1.257743 TCAAGAGGGTCAAGGTCTCG 58.742 55.000 0.00 0.00 33.16 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.