Multiple sequence alignment - TraesCS4D01G274900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G274900 chr4D 100.000 2312 0 0 1 2312 445487989 445490300 0.000000e+00 4270.0
1 TraesCS4D01G274900 chr4D 94.874 1990 38 8 365 2312 485393867 485395834 0.000000e+00 3051.0
2 TraesCS4D01G274900 chr4D 94.340 53 0 2 1644 1695 445489564 445489614 6.850000e-11 78.7
3 TraesCS4D01G274900 chr4D 94.340 53 0 2 1576 1626 445489632 445489683 6.850000e-11 78.7
4 TraesCS4D01G274900 chr4D 94.340 53 0 2 1576 1626 485395163 485395214 6.850000e-11 78.7
5 TraesCS4D01G274900 chr1A 91.335 1281 49 10 367 1622 26479589 26480832 0.000000e+00 1694.0
6 TraesCS4D01G274900 chr1A 96.741 491 14 1 1824 2312 26480859 26481349 0.000000e+00 817.0
7 TraesCS4D01G274900 chr1A 94.737 76 0 1 1653 1724 26480794 26480869 5.220000e-22 115.0
8 TraesCS4D01G274900 chr7A 92.829 1032 56 12 366 1388 74974729 74973707 0.000000e+00 1480.0
9 TraesCS4D01G274900 chr7A 88.333 540 37 9 1797 2312 12342740 12343277 1.950000e-175 625.0
10 TraesCS4D01G274900 chr7A 94.057 387 19 3 1927 2312 74973207 74972824 3.310000e-163 584.0
11 TraesCS4D01G274900 chr7A 90.323 279 11 4 1672 1949 74973497 74973234 3.650000e-93 351.0
12 TraesCS4D01G274900 chr7A 93.939 231 12 1 1 229 19363376 19363606 4.730000e-92 348.0
13 TraesCS4D01G274900 chr7A 98.125 160 3 0 1408 1567 74973729 74973570 1.750000e-71 279.0
14 TraesCS4D01G274900 chr7A 90.476 63 4 2 1657 1718 9744978 9744917 5.290000e-12 82.4
15 TraesCS4D01G274900 chr7A 97.143 35 0 1 1657 1691 74973523 74973490 8.920000e-05 58.4
16 TraesCS4D01G274900 chr3D 91.596 1059 48 21 366 1384 354004241 354003184 0.000000e+00 1424.0
17 TraesCS4D01G274900 chr3D 94.157 753 29 6 650 1388 5461605 5462356 0.000000e+00 1133.0
18 TraesCS4D01G274900 chr3D 95.122 656 24 4 1657 2312 5462522 5463169 0.000000e+00 1027.0
19 TraesCS4D01G274900 chr3D 95.596 386 14 2 1927 2312 354002683 354002301 1.170000e-172 616.0
20 TraesCS4D01G274900 chr3D 90.811 370 27 4 359 728 5461271 5461633 2.670000e-134 488.0
21 TraesCS4D01G274900 chr3D 94.684 301 7 3 1657 1949 354003009 354002710 2.090000e-125 459.0
22 TraesCS4D01G274900 chr3D 95.045 222 4 3 1408 1622 354003197 354002976 2.200000e-90 342.0
23 TraesCS4D01G274900 chr3D 93.833 227 5 3 1408 1626 5462334 5462559 1.320000e-87 333.0
24 TraesCS4D01G274900 chr1B 89.864 1026 88 11 365 1388 599266302 599267313 0.000000e+00 1304.0
25 TraesCS4D01G274900 chr1B 87.013 1001 99 17 365 1350 61378888 61377904 0.000000e+00 1099.0
26 TraesCS4D01G274900 chr1B 86.654 1034 88 29 393 1379 680928886 680927856 0.000000e+00 1099.0
27 TraesCS4D01G274900 chr1B 88.538 253 11 4 1383 1618 599267257 599267508 8.080000e-75 291.0
28 TraesCS4D01G274900 chr1B 88.393 224 20 4 1383 1602 680927906 680927685 4.900000e-67 265.0
29 TraesCS4D01G274900 chr5B 88.792 1035 81 21 364 1379 6645214 6644196 0.000000e+00 1236.0
30 TraesCS4D01G274900 chr5B 91.471 680 51 6 723 1398 376514250 376514926 0.000000e+00 928.0
31 TraesCS4D01G274900 chr4A 96.837 664 21 0 650 1313 744186550 744185887 0.000000e+00 1110.0
32 TraesCS4D01G274900 chr4A 96.696 575 19 0 1738 2312 744185622 744185048 0.000000e+00 957.0
33 TraesCS4D01G274900 chr4A 94.475 362 18 2 367 728 744186881 744186522 7.220000e-155 556.0
34 TraesCS4D01G274900 chr4A 92.910 268 9 3 1432 1691 744185855 744185590 4.660000e-102 381.0
35 TraesCS4D01G274900 chr1D 91.902 531 29 6 1796 2312 406566511 406567041 0.000000e+00 730.0
36 TraesCS4D01G274900 chr2D 91.525 531 30 7 1796 2312 474437544 474437015 0.000000e+00 717.0
37 TraesCS4D01G274900 chr2D 88.364 550 39 10 365 892 474438746 474438200 2.510000e-179 638.0
38 TraesCS4D01G274900 chr2D 96.861 223 6 1 1 223 346401173 346400952 2.810000e-99 372.0
39 TraesCS4D01G274900 chr6B 90.977 532 32 8 1796 2312 668926486 668927016 0.000000e+00 702.0
40 TraesCS4D01G274900 chr7D 88.704 540 34 10 1797 2312 12982995 12983531 3.240000e-178 634.0
41 TraesCS4D01G274900 chr7D 95.633 229 7 1 1 229 548814186 548814411 4.690000e-97 364.0
42 TraesCS4D01G274900 chr5D 97.071 239 6 1 1 239 401380424 401380187 3.580000e-108 401.0
43 TraesCS4D01G274900 chr5D 96.087 230 8 1 1 229 417725518 417725747 7.800000e-100 374.0
44 TraesCS4D01G274900 chr5D 95.175 228 11 0 1 228 502657113 502656886 6.070000e-96 361.0
45 TraesCS4D01G274900 chrUn 96.943 229 6 1 1 229 43651653 43651426 1.300000e-102 383.0
46 TraesCS4D01G274900 chrUn 96.522 230 8 0 1 230 27119078 27119307 4.660000e-102 381.0
47 TraesCS4D01G274900 chr6D 94.323 229 13 0 1 229 344721137 344721365 3.650000e-93 351.0
48 TraesCS4D01G274900 chr3B 89.908 218 15 3 1408 1618 216204423 216204640 8.140000e-70 274.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G274900 chr4D 445487989 445490300 2311 False 1475.800000 4270 96.226667 1 2312 3 chr4D.!!$F1 2311
1 TraesCS4D01G274900 chr4D 485393867 485395834 1967 False 1564.850000 3051 94.607000 365 2312 2 chr4D.!!$F2 1947
2 TraesCS4D01G274900 chr1A 26479589 26481349 1760 False 875.333333 1694 94.271000 367 2312 3 chr1A.!!$F1 1945
3 TraesCS4D01G274900 chr7A 12342740 12343277 537 False 625.000000 625 88.333000 1797 2312 1 chr7A.!!$F1 515
4 TraesCS4D01G274900 chr7A 74972824 74974729 1905 True 550.480000 1480 94.495400 366 2312 5 chr7A.!!$R2 1946
5 TraesCS4D01G274900 chr3D 5461271 5463169 1898 False 745.250000 1133 93.480750 359 2312 4 chr3D.!!$F1 1953
6 TraesCS4D01G274900 chr3D 354002301 354004241 1940 True 710.250000 1424 94.230250 366 2312 4 chr3D.!!$R1 1946
7 TraesCS4D01G274900 chr1B 61377904 61378888 984 True 1099.000000 1099 87.013000 365 1350 1 chr1B.!!$R1 985
8 TraesCS4D01G274900 chr1B 599266302 599267508 1206 False 797.500000 1304 89.201000 365 1618 2 chr1B.!!$F1 1253
9 TraesCS4D01G274900 chr1B 680927685 680928886 1201 True 682.000000 1099 87.523500 393 1602 2 chr1B.!!$R2 1209
10 TraesCS4D01G274900 chr5B 6644196 6645214 1018 True 1236.000000 1236 88.792000 364 1379 1 chr5B.!!$R1 1015
11 TraesCS4D01G274900 chr5B 376514250 376514926 676 False 928.000000 928 91.471000 723 1398 1 chr5B.!!$F1 675
12 TraesCS4D01G274900 chr4A 744185048 744186881 1833 True 751.000000 1110 95.229500 367 2312 4 chr4A.!!$R1 1945
13 TraesCS4D01G274900 chr1D 406566511 406567041 530 False 730.000000 730 91.902000 1796 2312 1 chr1D.!!$F1 516
14 TraesCS4D01G274900 chr2D 474437015 474438746 1731 True 677.500000 717 89.944500 365 2312 2 chr2D.!!$R2 1947
15 TraesCS4D01G274900 chr6B 668926486 668927016 530 False 702.000000 702 90.977000 1796 2312 1 chr6B.!!$F1 516
16 TraesCS4D01G274900 chr7D 12982995 12983531 536 False 634.000000 634 88.704000 1797 2312 1 chr7D.!!$F1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.031616 TTTGTGCCTTTTCCCCTGGT 60.032 50.0 0.0 0.0 0.0 4.00 F
29 30 0.031616 TGTGCCTTTTCCCCTGGTTT 60.032 50.0 0.0 0.0 0.0 3.27 F
31 32 0.031616 TGCCTTTTCCCCTGGTTTGT 60.032 50.0 0.0 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1056 1203 0.957395 CTGTTGCTCCAACGGCATCT 60.957 55.000 4.2 0.0 46.13 2.90 R
1138 1286 3.866449 GCCAAAGCAGCTCTACTAGTTGT 60.866 47.826 0.0 0.0 38.60 3.32 R
1384 1563 4.484912 ACAGTACTCCTTCCTCACTTCTT 58.515 43.478 0.0 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.977393 ACCTCGTGTTTGTGCCTT 57.023 50.000 0.00 0.00 0.00 4.35
18 19 3.184736 ACCTCGTGTTTGTGCCTTT 57.815 47.368 0.00 0.00 0.00 3.11
19 20 1.470051 ACCTCGTGTTTGTGCCTTTT 58.530 45.000 0.00 0.00 0.00 2.27
20 21 1.404035 ACCTCGTGTTTGTGCCTTTTC 59.596 47.619 0.00 0.00 0.00 2.29
21 22 1.269051 CCTCGTGTTTGTGCCTTTTCC 60.269 52.381 0.00 0.00 0.00 3.13
22 23 0.741915 TCGTGTTTGTGCCTTTTCCC 59.258 50.000 0.00 0.00 0.00 3.97
23 24 0.249280 CGTGTTTGTGCCTTTTCCCC 60.249 55.000 0.00 0.00 0.00 4.81
24 25 1.119684 GTGTTTGTGCCTTTTCCCCT 58.880 50.000 0.00 0.00 0.00 4.79
25 26 1.118838 TGTTTGTGCCTTTTCCCCTG 58.881 50.000 0.00 0.00 0.00 4.45
26 27 0.392706 GTTTGTGCCTTTTCCCCTGG 59.607 55.000 0.00 0.00 0.00 4.45
27 28 0.031616 TTTGTGCCTTTTCCCCTGGT 60.032 50.000 0.00 0.00 0.00 4.00
28 29 0.031616 TTGTGCCTTTTCCCCTGGTT 60.032 50.000 0.00 0.00 0.00 3.67
29 30 0.031616 TGTGCCTTTTCCCCTGGTTT 60.032 50.000 0.00 0.00 0.00 3.27
30 31 0.392706 GTGCCTTTTCCCCTGGTTTG 59.607 55.000 0.00 0.00 0.00 2.93
31 32 0.031616 TGCCTTTTCCCCTGGTTTGT 60.032 50.000 0.00 0.00 0.00 2.83
32 33 1.218196 TGCCTTTTCCCCTGGTTTGTA 59.782 47.619 0.00 0.00 0.00 2.41
33 34 2.321719 GCCTTTTCCCCTGGTTTGTAA 58.678 47.619 0.00 0.00 0.00 2.41
34 35 2.903784 GCCTTTTCCCCTGGTTTGTAAT 59.096 45.455 0.00 0.00 0.00 1.89
35 36 4.090819 GCCTTTTCCCCTGGTTTGTAATA 58.909 43.478 0.00 0.00 0.00 0.98
36 37 4.159693 GCCTTTTCCCCTGGTTTGTAATAG 59.840 45.833 0.00 0.00 0.00 1.73
37 38 4.159693 CCTTTTCCCCTGGTTTGTAATAGC 59.840 45.833 0.00 0.00 0.00 2.97
38 39 4.668138 TTTCCCCTGGTTTGTAATAGCT 57.332 40.909 0.00 0.00 0.00 3.32
39 40 5.782677 TTTCCCCTGGTTTGTAATAGCTA 57.217 39.130 0.00 0.00 0.00 3.32
40 41 5.367945 TTCCCCTGGTTTGTAATAGCTAG 57.632 43.478 0.00 0.00 0.00 3.42
41 42 4.627015 TCCCCTGGTTTGTAATAGCTAGA 58.373 43.478 0.00 0.00 0.00 2.43
42 43 4.407945 TCCCCTGGTTTGTAATAGCTAGAC 59.592 45.833 0.00 0.38 0.00 2.59
43 44 4.409247 CCCCTGGTTTGTAATAGCTAGACT 59.591 45.833 0.00 0.00 0.00 3.24
44 45 5.453480 CCCCTGGTTTGTAATAGCTAGACTC 60.453 48.000 0.00 0.00 0.00 3.36
45 46 5.128827 CCCTGGTTTGTAATAGCTAGACTCA 59.871 44.000 0.00 0.00 0.00 3.41
46 47 6.351881 CCCTGGTTTGTAATAGCTAGACTCAA 60.352 42.308 0.00 0.00 0.00 3.02
47 48 7.103641 CCTGGTTTGTAATAGCTAGACTCAAA 58.896 38.462 0.00 5.94 0.00 2.69
48 49 7.064728 CCTGGTTTGTAATAGCTAGACTCAAAC 59.935 40.741 23.20 23.20 40.92 2.93
49 50 7.676947 TGGTTTGTAATAGCTAGACTCAAACT 58.323 34.615 26.36 0.97 41.20 2.66
50 51 8.809066 TGGTTTGTAATAGCTAGACTCAAACTA 58.191 33.333 26.36 22.67 41.20 2.24
51 52 9.649167 GGTTTGTAATAGCTAGACTCAAACTAA 57.351 33.333 26.36 10.38 41.20 2.24
57 58 8.826293 AATAGCTAGACTCAAACTAAGTAGGT 57.174 34.615 0.00 0.00 0.00 3.08
58 59 6.518208 AGCTAGACTCAAACTAAGTAGGTG 57.482 41.667 0.00 0.00 0.00 4.00
59 60 5.103687 GCTAGACTCAAACTAAGTAGGTGC 58.896 45.833 0.00 0.00 0.00 5.01
60 61 5.105675 GCTAGACTCAAACTAAGTAGGTGCT 60.106 44.000 0.00 0.00 0.00 4.40
61 62 5.140747 AGACTCAAACTAAGTAGGTGCTG 57.859 43.478 0.00 0.00 0.00 4.41
62 63 4.589374 AGACTCAAACTAAGTAGGTGCTGT 59.411 41.667 0.00 0.00 0.00 4.40
63 64 4.884247 ACTCAAACTAAGTAGGTGCTGTC 58.116 43.478 0.00 0.00 0.00 3.51
64 65 4.344102 ACTCAAACTAAGTAGGTGCTGTCA 59.656 41.667 0.00 0.00 0.00 3.58
65 66 4.883083 TCAAACTAAGTAGGTGCTGTCAG 58.117 43.478 0.00 0.00 0.00 3.51
66 67 3.963428 AACTAAGTAGGTGCTGTCAGG 57.037 47.619 1.14 0.00 0.00 3.86
67 68 2.890814 ACTAAGTAGGTGCTGTCAGGT 58.109 47.619 1.14 0.00 0.00 4.00
68 69 3.240302 ACTAAGTAGGTGCTGTCAGGTT 58.760 45.455 1.14 0.00 0.00 3.50
69 70 3.646637 ACTAAGTAGGTGCTGTCAGGTTT 59.353 43.478 1.14 0.00 0.00 3.27
70 71 3.577805 AAGTAGGTGCTGTCAGGTTTT 57.422 42.857 1.14 0.00 0.00 2.43
71 72 3.127425 AGTAGGTGCTGTCAGGTTTTC 57.873 47.619 1.14 0.00 0.00 2.29
72 73 1.798813 GTAGGTGCTGTCAGGTTTTCG 59.201 52.381 1.14 0.00 0.00 3.46
73 74 1.166531 AGGTGCTGTCAGGTTTTCGC 61.167 55.000 1.14 0.00 0.00 4.70
74 75 1.282875 GTGCTGTCAGGTTTTCGCC 59.717 57.895 1.14 0.00 0.00 5.54
75 76 1.896660 TGCTGTCAGGTTTTCGCCC 60.897 57.895 1.14 0.00 0.00 6.13
76 77 2.626780 GCTGTCAGGTTTTCGCCCC 61.627 63.158 1.14 0.00 0.00 5.80
77 78 1.228124 CTGTCAGGTTTTCGCCCCA 60.228 57.895 0.00 0.00 0.00 4.96
78 79 0.609131 CTGTCAGGTTTTCGCCCCAT 60.609 55.000 0.00 0.00 0.00 4.00
79 80 0.893270 TGTCAGGTTTTCGCCCCATG 60.893 55.000 0.00 0.00 0.00 3.66
80 81 1.304052 TCAGGTTTTCGCCCCATGG 60.304 57.895 4.14 4.14 0.00 3.66
81 82 1.606313 CAGGTTTTCGCCCCATGGT 60.606 57.895 11.73 0.00 0.00 3.55
82 83 1.606313 AGGTTTTCGCCCCATGGTG 60.606 57.895 11.73 0.00 43.93 4.17
83 84 2.261361 GTTTTCGCCCCATGGTGC 59.739 61.111 9.47 9.47 42.19 5.01
84 85 2.117206 TTTTCGCCCCATGGTGCT 59.883 55.556 17.54 0.00 42.19 4.40
85 86 1.976474 TTTTCGCCCCATGGTGCTC 60.976 57.895 17.54 0.00 42.19 4.26
86 87 4.776322 TTCGCCCCATGGTGCTCG 62.776 66.667 17.54 11.07 42.19 5.03
89 90 2.676471 GCCCCATGGTGCTCGTTT 60.676 61.111 12.49 0.00 0.00 3.60
90 91 2.700773 GCCCCATGGTGCTCGTTTC 61.701 63.158 12.49 0.00 0.00 2.78
91 92 2.398554 CCCCATGGTGCTCGTTTCG 61.399 63.158 11.73 0.00 0.00 3.46
92 93 1.375396 CCCATGGTGCTCGTTTCGA 60.375 57.895 11.73 0.00 0.00 3.71
93 94 0.744414 CCCATGGTGCTCGTTTCGAT 60.744 55.000 11.73 0.00 34.61 3.59
94 95 0.374758 CCATGGTGCTCGTTTCGATG 59.625 55.000 2.57 0.00 34.61 3.84
95 96 0.374758 CATGGTGCTCGTTTCGATGG 59.625 55.000 0.00 0.00 34.61 3.51
96 97 1.369091 ATGGTGCTCGTTTCGATGGC 61.369 55.000 0.00 0.00 34.61 4.40
97 98 2.395690 GTGCTCGTTTCGATGGCG 59.604 61.111 0.00 0.00 34.61 5.69
98 99 2.813474 TGCTCGTTTCGATGGCGG 60.813 61.111 0.00 0.00 38.28 6.13
99 100 3.564027 GCTCGTTTCGATGGCGGG 61.564 66.667 0.00 0.00 38.28 6.13
100 101 3.564027 CTCGTTTCGATGGCGGGC 61.564 66.667 0.00 0.00 38.28 6.13
103 104 3.564027 GTTTCGATGGCGGGCGAG 61.564 66.667 0.00 0.00 37.85 5.03
114 115 4.643387 GGGCGAGCACAGTGGGTT 62.643 66.667 1.84 0.00 0.00 4.11
115 116 2.594592 GGCGAGCACAGTGGGTTT 60.595 61.111 1.84 0.00 0.00 3.27
116 117 2.617274 GGCGAGCACAGTGGGTTTC 61.617 63.158 1.84 0.00 0.00 2.78
117 118 1.598130 GCGAGCACAGTGGGTTTCT 60.598 57.895 1.84 0.00 0.00 2.52
118 119 1.166531 GCGAGCACAGTGGGTTTCTT 61.167 55.000 1.84 0.00 0.00 2.52
119 120 0.588252 CGAGCACAGTGGGTTTCTTG 59.412 55.000 1.84 0.00 0.00 3.02
120 121 0.954452 GAGCACAGTGGGTTTCTTGG 59.046 55.000 1.84 0.00 0.00 3.61
121 122 1.109323 AGCACAGTGGGTTTCTTGGC 61.109 55.000 1.84 0.00 0.00 4.52
122 123 1.391157 GCACAGTGGGTTTCTTGGCA 61.391 55.000 1.84 0.00 0.00 4.92
123 124 0.670162 CACAGTGGGTTTCTTGGCAG 59.330 55.000 0.00 0.00 0.00 4.85
124 125 0.258774 ACAGTGGGTTTCTTGGCAGT 59.741 50.000 0.00 0.00 0.00 4.40
125 126 0.670162 CAGTGGGTTTCTTGGCAGTG 59.330 55.000 0.00 0.00 0.00 3.66
126 127 1.109323 AGTGGGTTTCTTGGCAGTGC 61.109 55.000 6.55 6.55 0.00 4.40
127 128 2.192861 TGGGTTTCTTGGCAGTGCG 61.193 57.895 9.45 0.00 0.00 5.34
128 129 2.193536 GGGTTTCTTGGCAGTGCGT 61.194 57.895 9.45 0.00 0.00 5.24
129 130 1.733526 GGTTTCTTGGCAGTGCGTT 59.266 52.632 9.45 0.00 0.00 4.84
130 131 0.594796 GGTTTCTTGGCAGTGCGTTG 60.595 55.000 9.45 1.18 0.00 4.10
131 132 0.380378 GTTTCTTGGCAGTGCGTTGA 59.620 50.000 9.45 3.76 0.00 3.18
132 133 1.098869 TTTCTTGGCAGTGCGTTGAA 58.901 45.000 9.45 9.80 0.00 2.69
133 134 0.380378 TTCTTGGCAGTGCGTTGAAC 59.620 50.000 9.45 0.00 0.00 3.18
134 135 0.463654 TCTTGGCAGTGCGTTGAACT 60.464 50.000 9.45 0.00 0.00 3.01
135 136 0.040958 CTTGGCAGTGCGTTGAACTC 60.041 55.000 9.45 0.00 0.00 3.01
136 137 1.771073 TTGGCAGTGCGTTGAACTCG 61.771 55.000 9.45 0.00 0.00 4.18
143 144 3.159984 CGTTGAACTCGCTGCTCC 58.840 61.111 0.00 0.00 0.00 4.70
144 145 1.373497 CGTTGAACTCGCTGCTCCT 60.373 57.895 0.00 0.00 0.00 3.69
145 146 1.347817 CGTTGAACTCGCTGCTCCTC 61.348 60.000 0.00 0.00 0.00 3.71
146 147 0.037790 GTTGAACTCGCTGCTCCTCT 60.038 55.000 0.00 0.00 0.00 3.69
147 148 0.681733 TTGAACTCGCTGCTCCTCTT 59.318 50.000 0.00 0.00 0.00 2.85
148 149 0.681733 TGAACTCGCTGCTCCTCTTT 59.318 50.000 0.00 0.00 0.00 2.52
149 150 1.337260 TGAACTCGCTGCTCCTCTTTC 60.337 52.381 0.00 0.00 0.00 2.62
150 151 0.036858 AACTCGCTGCTCCTCTTTCC 60.037 55.000 0.00 0.00 0.00 3.13
151 152 0.902516 ACTCGCTGCTCCTCTTTCCT 60.903 55.000 0.00 0.00 0.00 3.36
152 153 0.248843 CTCGCTGCTCCTCTTTCCTT 59.751 55.000 0.00 0.00 0.00 3.36
153 154 1.478510 CTCGCTGCTCCTCTTTCCTTA 59.521 52.381 0.00 0.00 0.00 2.69
154 155 1.204941 TCGCTGCTCCTCTTTCCTTAC 59.795 52.381 0.00 0.00 0.00 2.34
155 156 1.205893 CGCTGCTCCTCTTTCCTTACT 59.794 52.381 0.00 0.00 0.00 2.24
156 157 2.354203 CGCTGCTCCTCTTTCCTTACTT 60.354 50.000 0.00 0.00 0.00 2.24
157 158 3.266636 GCTGCTCCTCTTTCCTTACTTC 58.733 50.000 0.00 0.00 0.00 3.01
158 159 3.867857 CTGCTCCTCTTTCCTTACTTCC 58.132 50.000 0.00 0.00 0.00 3.46
159 160 3.517500 CTGCTCCTCTTTCCTTACTTCCT 59.482 47.826 0.00 0.00 0.00 3.36
160 161 3.261897 TGCTCCTCTTTCCTTACTTCCTG 59.738 47.826 0.00 0.00 0.00 3.86
161 162 3.369997 GCTCCTCTTTCCTTACTTCCTGG 60.370 52.174 0.00 0.00 0.00 4.45
162 163 2.572104 TCCTCTTTCCTTACTTCCTGGC 59.428 50.000 0.00 0.00 0.00 4.85
163 164 2.573915 CCTCTTTCCTTACTTCCTGGCT 59.426 50.000 0.00 0.00 0.00 4.75
164 165 3.604582 CTCTTTCCTTACTTCCTGGCTG 58.395 50.000 0.00 0.00 0.00 4.85
165 166 2.979678 TCTTTCCTTACTTCCTGGCTGT 59.020 45.455 0.00 0.00 0.00 4.40
166 167 4.164981 TCTTTCCTTACTTCCTGGCTGTA 58.835 43.478 0.00 0.00 0.00 2.74
167 168 4.783227 TCTTTCCTTACTTCCTGGCTGTAT 59.217 41.667 0.00 0.00 0.00 2.29
168 169 4.755266 TTCCTTACTTCCTGGCTGTATC 57.245 45.455 0.00 0.00 0.00 2.24
169 170 2.693591 TCCTTACTTCCTGGCTGTATCG 59.306 50.000 0.00 0.00 0.00 2.92
170 171 2.224066 CCTTACTTCCTGGCTGTATCGG 60.224 54.545 0.00 0.00 0.00 4.18
171 172 2.447408 TACTTCCTGGCTGTATCGGA 57.553 50.000 0.00 0.00 0.00 4.55
172 173 1.115467 ACTTCCTGGCTGTATCGGAG 58.885 55.000 0.00 0.00 0.00 4.63
173 174 1.342076 ACTTCCTGGCTGTATCGGAGA 60.342 52.381 0.00 0.00 45.75 3.71
174 175 1.067821 CTTCCTGGCTGTATCGGAGAC 59.932 57.143 0.00 0.00 42.51 3.36
175 176 0.259065 TCCTGGCTGTATCGGAGACT 59.741 55.000 4.23 0.00 42.51 3.24
176 177 0.387202 CCTGGCTGTATCGGAGACTG 59.613 60.000 4.23 4.87 42.51 3.51
177 178 1.107114 CTGGCTGTATCGGAGACTGT 58.893 55.000 10.63 0.00 42.51 3.55
178 179 1.478510 CTGGCTGTATCGGAGACTGTT 59.521 52.381 10.63 0.00 42.51 3.16
179 180 1.204704 TGGCTGTATCGGAGACTGTTG 59.795 52.381 10.63 0.00 42.51 3.33
180 181 1.204941 GGCTGTATCGGAGACTGTTGT 59.795 52.381 10.63 0.00 42.51 3.32
181 182 2.426024 GGCTGTATCGGAGACTGTTGTA 59.574 50.000 10.63 0.00 42.51 2.41
182 183 3.068307 GGCTGTATCGGAGACTGTTGTAT 59.932 47.826 10.63 0.00 42.51 2.29
183 184 4.441634 GGCTGTATCGGAGACTGTTGTATT 60.442 45.833 10.63 0.00 42.51 1.89
184 185 5.109903 GCTGTATCGGAGACTGTTGTATTT 58.890 41.667 10.63 0.00 42.51 1.40
185 186 5.232414 GCTGTATCGGAGACTGTTGTATTTC 59.768 44.000 10.63 0.00 42.51 2.17
186 187 5.657474 TGTATCGGAGACTGTTGTATTTCC 58.343 41.667 4.23 0.00 42.51 3.13
187 188 3.226346 TCGGAGACTGTTGTATTTCCG 57.774 47.619 4.47 4.47 41.73 4.30
188 189 2.559668 TCGGAGACTGTTGTATTTCCGT 59.440 45.455 10.11 0.00 41.42 4.69
189 190 3.006110 TCGGAGACTGTTGTATTTCCGTT 59.994 43.478 10.11 0.00 41.42 4.44
190 191 3.744426 CGGAGACTGTTGTATTTCCGTTT 59.256 43.478 2.77 0.00 38.66 3.60
191 192 4.925054 CGGAGACTGTTGTATTTCCGTTTA 59.075 41.667 2.77 0.00 38.66 2.01
192 193 5.579511 CGGAGACTGTTGTATTTCCGTTTAT 59.420 40.000 2.77 0.00 38.66 1.40
193 194 6.091713 CGGAGACTGTTGTATTTCCGTTTATT 59.908 38.462 2.77 0.00 38.66 1.40
194 195 7.360607 CGGAGACTGTTGTATTTCCGTTTATTT 60.361 37.037 2.77 0.00 38.66 1.40
195 196 8.294577 GGAGACTGTTGTATTTCCGTTTATTTT 58.705 33.333 0.00 0.00 0.00 1.82
208 209 6.937392 TCCGTTTATTTTAAATGGAAAGGGG 58.063 36.000 15.32 9.12 41.08 4.79
209 210 5.583061 CCGTTTATTTTAAATGGAAAGGGGC 59.417 40.000 11.24 0.00 38.31 5.80
210 211 6.166982 CGTTTATTTTAAATGGAAAGGGGCA 58.833 36.000 0.00 0.00 0.00 5.36
211 212 6.091577 CGTTTATTTTAAATGGAAAGGGGCAC 59.908 38.462 0.00 0.00 0.00 5.01
224 225 2.522193 GGCACCCCCGGTTCAAAA 60.522 61.111 0.00 0.00 31.02 2.44
225 226 2.134933 GGCACCCCCGGTTCAAAAA 61.135 57.895 0.00 0.00 31.02 1.94
246 247 4.751767 AAAAGCTGGTTTTGGATTGTGA 57.248 36.364 15.96 0.00 36.96 3.58
247 248 4.751767 AAAGCTGGTTTTGGATTGTGAA 57.248 36.364 0.00 0.00 0.00 3.18
248 249 4.326504 AAGCTGGTTTTGGATTGTGAAG 57.673 40.909 0.00 0.00 0.00 3.02
249 250 2.036346 AGCTGGTTTTGGATTGTGAAGC 59.964 45.455 0.00 0.00 0.00 3.86
250 251 2.224018 GCTGGTTTTGGATTGTGAAGCA 60.224 45.455 0.00 0.00 0.00 3.91
251 252 3.555586 GCTGGTTTTGGATTGTGAAGCAT 60.556 43.478 0.00 0.00 0.00 3.79
252 253 4.321899 GCTGGTTTTGGATTGTGAAGCATA 60.322 41.667 0.00 0.00 0.00 3.14
253 254 5.625197 GCTGGTTTTGGATTGTGAAGCATAT 60.625 40.000 0.00 0.00 0.00 1.78
254 255 5.964758 TGGTTTTGGATTGTGAAGCATATC 58.035 37.500 0.00 0.00 0.00 1.63
255 256 5.716228 TGGTTTTGGATTGTGAAGCATATCT 59.284 36.000 0.00 0.00 0.00 1.98
256 257 6.038356 GGTTTTGGATTGTGAAGCATATCTG 58.962 40.000 0.00 0.00 0.00 2.90
273 274 7.853377 CATATCTGCATTATCAGTTGCTTTG 57.147 36.000 0.00 0.00 39.60 2.77
274 275 7.645402 CATATCTGCATTATCAGTTGCTTTGA 58.355 34.615 0.00 0.00 39.60 2.69
275 276 5.556355 TCTGCATTATCAGTTGCTTTGAG 57.444 39.130 0.00 0.00 39.60 3.02
276 277 5.005740 TCTGCATTATCAGTTGCTTTGAGT 58.994 37.500 0.00 0.00 39.60 3.41
277 278 5.474532 TCTGCATTATCAGTTGCTTTGAGTT 59.525 36.000 0.00 0.00 39.60 3.01
278 279 5.463286 TGCATTATCAGTTGCTTTGAGTTG 58.537 37.500 0.00 0.00 39.60 3.16
279 280 4.860907 GCATTATCAGTTGCTTTGAGTTGG 59.139 41.667 0.00 0.00 35.95 3.77
280 281 5.565439 GCATTATCAGTTGCTTTGAGTTGGT 60.565 40.000 0.00 0.00 35.95 3.67
281 282 6.349280 GCATTATCAGTTGCTTTGAGTTGGTA 60.349 38.462 0.00 0.00 35.95 3.25
282 283 7.629222 GCATTATCAGTTGCTTTGAGTTGGTAT 60.629 37.037 0.00 0.00 35.95 2.73
283 284 7.759489 TTATCAGTTGCTTTGAGTTGGTATT 57.241 32.000 0.00 0.00 0.00 1.89
284 285 5.437289 TCAGTTGCTTTGAGTTGGTATTG 57.563 39.130 0.00 0.00 0.00 1.90
285 286 4.887071 TCAGTTGCTTTGAGTTGGTATTGT 59.113 37.500 0.00 0.00 0.00 2.71
286 287 5.359576 TCAGTTGCTTTGAGTTGGTATTGTT 59.640 36.000 0.00 0.00 0.00 2.83
287 288 6.544197 TCAGTTGCTTTGAGTTGGTATTGTTA 59.456 34.615 0.00 0.00 0.00 2.41
288 289 7.067615 TCAGTTGCTTTGAGTTGGTATTGTTAA 59.932 33.333 0.00 0.00 0.00 2.01
289 290 7.867403 CAGTTGCTTTGAGTTGGTATTGTTAAT 59.133 33.333 0.00 0.00 0.00 1.40
290 291 8.421002 AGTTGCTTTGAGTTGGTATTGTTAATT 58.579 29.630 0.00 0.00 0.00 1.40
291 292 9.040939 GTTGCTTTGAGTTGGTATTGTTAATTT 57.959 29.630 0.00 0.00 0.00 1.82
292 293 9.606631 TTGCTTTGAGTTGGTATTGTTAATTTT 57.393 25.926 0.00 0.00 0.00 1.82
324 325 2.961526 AAACAGAGACGTGTGTGAGT 57.038 45.000 17.08 1.05 28.64 3.41
325 326 2.209838 AACAGAGACGTGTGTGAGTG 57.790 50.000 17.08 0.00 28.64 3.51
326 327 1.103803 ACAGAGACGTGTGTGAGTGT 58.896 50.000 17.08 0.00 0.00 3.55
327 328 1.202302 ACAGAGACGTGTGTGAGTGTG 60.202 52.381 17.08 0.00 0.00 3.82
328 329 1.103803 AGAGACGTGTGTGAGTGTGT 58.896 50.000 0.00 0.00 0.00 3.72
329 330 1.200483 GAGACGTGTGTGAGTGTGTG 58.800 55.000 0.00 0.00 0.00 3.82
330 331 0.530744 AGACGTGTGTGAGTGTGTGT 59.469 50.000 0.00 0.00 0.00 3.72
331 332 0.645355 GACGTGTGTGAGTGTGTGTG 59.355 55.000 0.00 0.00 0.00 3.82
332 333 0.037697 ACGTGTGTGAGTGTGTGTGT 60.038 50.000 0.00 0.00 0.00 3.72
333 334 0.369931 CGTGTGTGAGTGTGTGTGTG 59.630 55.000 0.00 0.00 0.00 3.82
334 335 1.438651 GTGTGTGAGTGTGTGTGTGT 58.561 50.000 0.00 0.00 0.00 3.72
335 336 1.128507 GTGTGTGAGTGTGTGTGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
336 337 1.270571 TGTGTGAGTGTGTGTGTGTGT 60.271 47.619 0.00 0.00 0.00 3.72
337 338 1.128507 GTGTGAGTGTGTGTGTGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
338 339 1.270571 TGTGAGTGTGTGTGTGTGTGT 60.271 47.619 0.00 0.00 0.00 3.72
339 340 1.128507 GTGAGTGTGTGTGTGTGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
340 341 1.270571 TGAGTGTGTGTGTGTGTGTGT 60.271 47.619 0.00 0.00 0.00 3.72
341 342 1.128507 GAGTGTGTGTGTGTGTGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
342 343 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
343 344 1.136085 GTGTGTGTGTGTGTGTGTGTC 60.136 52.381 0.00 0.00 0.00 3.67
344 345 1.152510 GTGTGTGTGTGTGTGTGTCA 58.847 50.000 0.00 0.00 0.00 3.58
345 346 1.533299 GTGTGTGTGTGTGTGTGTCAA 59.467 47.619 0.00 0.00 0.00 3.18
346 347 1.533299 TGTGTGTGTGTGTGTGTCAAC 59.467 47.619 0.00 0.00 0.00 3.18
347 348 1.135803 GTGTGTGTGTGTGTGTCAACC 60.136 52.381 0.00 0.00 0.00 3.77
348 349 1.271108 TGTGTGTGTGTGTGTCAACCT 60.271 47.619 0.00 0.00 0.00 3.50
349 350 2.028020 TGTGTGTGTGTGTGTCAACCTA 60.028 45.455 0.00 0.00 0.00 3.08
350 351 2.350498 GTGTGTGTGTGTGTCAACCTAC 59.650 50.000 0.00 0.00 0.00 3.18
351 352 2.235155 TGTGTGTGTGTGTCAACCTACT 59.765 45.455 0.00 0.00 0.00 2.57
352 353 2.864343 GTGTGTGTGTGTCAACCTACTC 59.136 50.000 0.00 0.00 0.00 2.59
353 354 2.159014 TGTGTGTGTGTCAACCTACTCC 60.159 50.000 0.00 0.00 0.00 3.85
354 355 2.102588 GTGTGTGTGTCAACCTACTCCT 59.897 50.000 0.00 0.00 0.00 3.69
355 356 2.769663 TGTGTGTGTCAACCTACTCCTT 59.230 45.455 0.00 0.00 0.00 3.36
356 357 3.131396 GTGTGTGTCAACCTACTCCTTG 58.869 50.000 0.00 0.00 0.00 3.61
357 358 2.769663 TGTGTGTCAACCTACTCCTTGT 59.230 45.455 0.00 0.00 0.00 3.16
358 359 3.199071 TGTGTGTCAACCTACTCCTTGTT 59.801 43.478 0.00 0.00 0.00 2.83
359 360 4.196971 GTGTGTCAACCTACTCCTTGTTT 58.803 43.478 0.00 0.00 0.00 2.83
360 361 5.104859 TGTGTGTCAACCTACTCCTTGTTTA 60.105 40.000 0.00 0.00 0.00 2.01
361 362 5.465724 GTGTGTCAACCTACTCCTTGTTTAG 59.534 44.000 0.00 0.00 0.00 1.85
362 363 4.995487 GTGTCAACCTACTCCTTGTTTAGG 59.005 45.833 0.00 0.00 46.27 2.69
419 420 2.325082 GCGCGGTCACTTTGGTCAT 61.325 57.895 8.83 0.00 0.00 3.06
627 629 5.238736 AGATAGAAATCCCCAATTCTCCCT 58.761 41.667 0.00 0.00 37.16 4.20
823 955 1.443407 CCAGGCGATGGTGAGGTAG 59.557 63.158 0.00 0.00 44.91 3.18
1364 1543 7.670140 TGATGAAGGAGTACTGTAGAAGAAGAA 59.330 37.037 0.00 0.00 0.00 2.52
1365 1544 7.455641 TGAAGGAGTACTGTAGAAGAAGAAG 57.544 40.000 0.00 0.00 0.00 2.85
1366 1545 7.232188 TGAAGGAGTACTGTAGAAGAAGAAGA 58.768 38.462 0.00 0.00 0.00 2.87
1367 1546 7.724506 TGAAGGAGTACTGTAGAAGAAGAAGAA 59.275 37.037 0.00 0.00 0.00 2.52
1368 1547 7.696992 AGGAGTACTGTAGAAGAAGAAGAAG 57.303 40.000 0.00 0.00 0.00 2.85
1369 1548 7.463431 AGGAGTACTGTAGAAGAAGAAGAAGA 58.537 38.462 0.00 0.00 0.00 2.87
1370 1549 7.945664 AGGAGTACTGTAGAAGAAGAAGAAGAA 59.054 37.037 0.00 0.00 0.00 2.52
1371 1550 8.241367 GGAGTACTGTAGAAGAAGAAGAAGAAG 58.759 40.741 0.00 0.00 0.00 2.85
1372 1551 8.927675 AGTACTGTAGAAGAAGAAGAAGAAGA 57.072 34.615 0.00 0.00 0.00 2.87
1373 1552 9.357161 AGTACTGTAGAAGAAGAAGAAGAAGAA 57.643 33.333 0.00 0.00 0.00 2.52
1374 1553 9.620660 GTACTGTAGAAGAAGAAGAAGAAGAAG 57.379 37.037 0.00 0.00 0.00 2.85
1375 1554 8.472007 ACTGTAGAAGAAGAAGAAGAAGAAGA 57.528 34.615 0.00 0.00 0.00 2.87
1376 1555 8.919145 ACTGTAGAAGAAGAAGAAGAAGAAGAA 58.081 33.333 0.00 0.00 0.00 2.52
1377 1556 9.410556 CTGTAGAAGAAGAAGAAGAAGAAGAAG 57.589 37.037 0.00 0.00 0.00 2.85
1378 1557 9.137459 TGTAGAAGAAGAAGAAGAAGAAGAAGA 57.863 33.333 0.00 0.00 0.00 2.87
1379 1558 9.974980 GTAGAAGAAGAAGAAGAAGAAGAAGAA 57.025 33.333 0.00 0.00 0.00 2.52
1381 1560 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1382 1561 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1383 1562 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1384 1563 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1393 1572 8.143835 AGAAGAAGAAGAAGAAGAAGAAGTGAG 58.856 37.037 0.00 0.00 0.00 3.51
1525 1705 7.885297 AGCATTAGCATGTTTAGAACTTTCAA 58.115 30.769 0.00 0.00 45.49 2.69
1944 2178 7.496346 AGAATGACAAGAAATGGGTAGACTA 57.504 36.000 0.00 0.00 0.00 2.59
2047 2327 5.308825 AGAAAGGGAAACACAGTCATAGTG 58.691 41.667 0.00 0.00 42.56 2.74
2143 2423 3.159213 TGATCTTTGTGGCACATTCCT 57.841 42.857 22.73 7.07 44.52 3.36
2144 2424 2.821378 TGATCTTTGTGGCACATTCCTG 59.179 45.455 22.73 9.91 44.52 3.86
2284 2579 2.549778 GGAGTGCTTGTCTCTCTGCTTT 60.550 50.000 0.00 0.00 36.02 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.404035 GAAAAGGCACAAACACGAGGT 59.596 47.619 0.00 0.00 0.00 3.85
1 2 1.269051 GGAAAAGGCACAAACACGAGG 60.269 52.381 0.00 0.00 0.00 4.63
2 3 1.269051 GGGAAAAGGCACAAACACGAG 60.269 52.381 0.00 0.00 0.00 4.18
3 4 0.741915 GGGAAAAGGCACAAACACGA 59.258 50.000 0.00 0.00 0.00 4.35
4 5 0.249280 GGGGAAAAGGCACAAACACG 60.249 55.000 0.00 0.00 0.00 4.49
5 6 1.119684 AGGGGAAAAGGCACAAACAC 58.880 50.000 0.00 0.00 0.00 3.32
6 7 1.118838 CAGGGGAAAAGGCACAAACA 58.881 50.000 0.00 0.00 0.00 2.83
7 8 0.392706 CCAGGGGAAAAGGCACAAAC 59.607 55.000 0.00 0.00 0.00 2.93
8 9 0.031616 ACCAGGGGAAAAGGCACAAA 60.032 50.000 0.00 0.00 0.00 2.83
9 10 0.031616 AACCAGGGGAAAAGGCACAA 60.032 50.000 0.00 0.00 0.00 3.33
10 11 0.031616 AAACCAGGGGAAAAGGCACA 60.032 50.000 0.00 0.00 0.00 4.57
11 12 0.392706 CAAACCAGGGGAAAAGGCAC 59.607 55.000 0.00 0.00 0.00 5.01
12 13 0.031616 ACAAACCAGGGGAAAAGGCA 60.032 50.000 0.00 0.00 0.00 4.75
13 14 2.003937 TACAAACCAGGGGAAAAGGC 57.996 50.000 0.00 0.00 0.00 4.35
14 15 4.159693 GCTATTACAAACCAGGGGAAAAGG 59.840 45.833 0.00 0.00 0.00 3.11
15 16 5.016831 AGCTATTACAAACCAGGGGAAAAG 58.983 41.667 0.00 0.00 0.00 2.27
16 17 5.005628 AGCTATTACAAACCAGGGGAAAA 57.994 39.130 0.00 0.00 0.00 2.29
17 18 4.668138 AGCTATTACAAACCAGGGGAAA 57.332 40.909 0.00 0.00 0.00 3.13
18 19 5.034200 TCTAGCTATTACAAACCAGGGGAA 58.966 41.667 0.00 0.00 0.00 3.97
19 20 4.407945 GTCTAGCTATTACAAACCAGGGGA 59.592 45.833 0.00 0.00 0.00 4.81
20 21 4.409247 AGTCTAGCTATTACAAACCAGGGG 59.591 45.833 0.00 0.00 0.00 4.79
21 22 5.128827 TGAGTCTAGCTATTACAAACCAGGG 59.871 44.000 0.00 0.00 0.00 4.45
22 23 6.222038 TGAGTCTAGCTATTACAAACCAGG 57.778 41.667 0.00 0.00 0.00 4.45
23 24 7.819900 AGTTTGAGTCTAGCTATTACAAACCAG 59.180 37.037 24.80 4.99 43.26 4.00
24 25 7.676947 AGTTTGAGTCTAGCTATTACAAACCA 58.323 34.615 24.80 11.12 43.26 3.67
25 26 9.649167 TTAGTTTGAGTCTAGCTATTACAAACC 57.351 33.333 24.80 15.77 43.26 3.27
31 32 9.917887 ACCTACTTAGTTTGAGTCTAGCTATTA 57.082 33.333 0.00 0.00 0.00 0.98
32 33 8.688151 CACCTACTTAGTTTGAGTCTAGCTATT 58.312 37.037 0.00 0.00 0.00 1.73
33 34 7.201839 GCACCTACTTAGTTTGAGTCTAGCTAT 60.202 40.741 0.00 0.00 0.00 2.97
34 35 6.095160 GCACCTACTTAGTTTGAGTCTAGCTA 59.905 42.308 0.00 0.00 0.00 3.32
35 36 5.105675 GCACCTACTTAGTTTGAGTCTAGCT 60.106 44.000 0.00 0.00 0.00 3.32
36 37 5.103687 GCACCTACTTAGTTTGAGTCTAGC 58.896 45.833 0.00 0.00 0.00 3.42
37 38 6.071840 ACAGCACCTACTTAGTTTGAGTCTAG 60.072 42.308 0.00 0.00 0.00 2.43
38 39 5.773680 ACAGCACCTACTTAGTTTGAGTCTA 59.226 40.000 0.00 0.00 0.00 2.59
39 40 4.589374 ACAGCACCTACTTAGTTTGAGTCT 59.411 41.667 0.00 0.00 0.00 3.24
40 41 4.884247 ACAGCACCTACTTAGTTTGAGTC 58.116 43.478 0.00 0.00 0.00 3.36
41 42 4.344102 TGACAGCACCTACTTAGTTTGAGT 59.656 41.667 0.00 0.00 0.00 3.41
42 43 4.883083 TGACAGCACCTACTTAGTTTGAG 58.117 43.478 0.00 0.00 0.00 3.02
43 44 4.262463 CCTGACAGCACCTACTTAGTTTGA 60.262 45.833 0.00 0.00 0.00 2.69
44 45 3.997021 CCTGACAGCACCTACTTAGTTTG 59.003 47.826 0.00 0.00 0.00 2.93
45 46 3.646637 ACCTGACAGCACCTACTTAGTTT 59.353 43.478 0.00 0.00 0.00 2.66
46 47 3.240302 ACCTGACAGCACCTACTTAGTT 58.760 45.455 0.00 0.00 0.00 2.24
47 48 2.890814 ACCTGACAGCACCTACTTAGT 58.109 47.619 0.00 0.00 0.00 2.24
48 49 3.963428 AACCTGACAGCACCTACTTAG 57.037 47.619 0.00 0.00 0.00 2.18
49 50 4.638304 GAAAACCTGACAGCACCTACTTA 58.362 43.478 0.00 0.00 0.00 2.24
50 51 3.477530 GAAAACCTGACAGCACCTACTT 58.522 45.455 0.00 0.00 0.00 2.24
51 52 2.548067 CGAAAACCTGACAGCACCTACT 60.548 50.000 0.00 0.00 0.00 2.57
52 53 1.798813 CGAAAACCTGACAGCACCTAC 59.201 52.381 0.00 0.00 0.00 3.18
53 54 1.876416 GCGAAAACCTGACAGCACCTA 60.876 52.381 0.00 0.00 0.00 3.08
54 55 1.166531 GCGAAAACCTGACAGCACCT 61.167 55.000 0.00 0.00 0.00 4.00
55 56 1.282875 GCGAAAACCTGACAGCACC 59.717 57.895 0.00 0.00 0.00 5.01
56 57 1.282875 GGCGAAAACCTGACAGCAC 59.717 57.895 0.00 0.00 0.00 4.40
57 58 1.896660 GGGCGAAAACCTGACAGCA 60.897 57.895 0.00 0.00 0.00 4.41
58 59 2.626780 GGGGCGAAAACCTGACAGC 61.627 63.158 0.00 0.00 0.00 4.40
59 60 0.609131 ATGGGGCGAAAACCTGACAG 60.609 55.000 0.00 0.00 0.00 3.51
60 61 0.893270 CATGGGGCGAAAACCTGACA 60.893 55.000 0.00 0.00 0.00 3.58
61 62 1.595093 CCATGGGGCGAAAACCTGAC 61.595 60.000 2.85 0.00 0.00 3.51
62 63 1.304052 CCATGGGGCGAAAACCTGA 60.304 57.895 2.85 0.00 0.00 3.86
63 64 1.606313 ACCATGGGGCGAAAACCTG 60.606 57.895 18.09 0.00 37.90 4.00
64 65 1.606313 CACCATGGGGCGAAAACCT 60.606 57.895 18.09 0.00 37.90 3.50
65 66 2.969827 CACCATGGGGCGAAAACC 59.030 61.111 18.09 0.00 37.90 3.27
66 67 2.212900 GAGCACCATGGGGCGAAAAC 62.213 60.000 32.75 18.31 37.90 2.43
67 68 1.976474 GAGCACCATGGGGCGAAAA 60.976 57.895 32.75 0.00 37.90 2.29
68 69 2.361104 GAGCACCATGGGGCGAAA 60.361 61.111 32.75 0.00 37.90 3.46
69 70 4.776322 CGAGCACCATGGGGCGAA 62.776 66.667 32.75 0.00 37.90 4.70
72 73 2.676471 AAACGAGCACCATGGGGC 60.676 61.111 32.58 32.58 37.90 5.80
73 74 2.398554 CGAAACGAGCACCATGGGG 61.399 63.158 18.09 14.63 41.29 4.96
74 75 0.744414 ATCGAAACGAGCACCATGGG 60.744 55.000 18.09 6.26 39.91 4.00
75 76 0.374758 CATCGAAACGAGCACCATGG 59.625 55.000 11.19 11.19 39.91 3.66
76 77 0.374758 CCATCGAAACGAGCACCATG 59.625 55.000 0.00 0.00 39.91 3.66
77 78 1.369091 GCCATCGAAACGAGCACCAT 61.369 55.000 0.00 0.00 39.91 3.55
78 79 2.032634 GCCATCGAAACGAGCACCA 61.033 57.895 0.00 0.00 39.91 4.17
79 80 2.785258 GCCATCGAAACGAGCACC 59.215 61.111 0.00 0.00 39.91 5.01
80 81 2.395690 CGCCATCGAAACGAGCAC 59.604 61.111 0.00 0.00 39.91 4.40
81 82 2.813474 CCGCCATCGAAACGAGCA 60.813 61.111 6.66 0.00 39.91 4.26
82 83 3.564027 CCCGCCATCGAAACGAGC 61.564 66.667 6.66 0.00 39.91 5.03
83 84 3.564027 GCCCGCCATCGAAACGAG 61.564 66.667 6.66 0.00 39.91 4.18
86 87 3.564027 CTCGCCCGCCATCGAAAC 61.564 66.667 0.00 0.00 38.10 2.78
97 98 4.643387 AACCCACTGTGCTCGCCC 62.643 66.667 1.29 0.00 0.00 6.13
98 99 2.594592 AAACCCACTGTGCTCGCC 60.595 61.111 1.29 0.00 0.00 5.54
99 100 1.166531 AAGAAACCCACTGTGCTCGC 61.167 55.000 1.29 0.00 0.00 5.03
100 101 0.588252 CAAGAAACCCACTGTGCTCG 59.412 55.000 1.29 0.00 0.00 5.03
101 102 0.954452 CCAAGAAACCCACTGTGCTC 59.046 55.000 1.29 0.00 0.00 4.26
102 103 1.109323 GCCAAGAAACCCACTGTGCT 61.109 55.000 1.29 0.00 0.00 4.40
103 104 1.363807 GCCAAGAAACCCACTGTGC 59.636 57.895 1.29 0.00 0.00 4.57
104 105 0.670162 CTGCCAAGAAACCCACTGTG 59.330 55.000 0.00 0.00 0.00 3.66
105 106 0.258774 ACTGCCAAGAAACCCACTGT 59.741 50.000 0.00 0.00 0.00 3.55
106 107 0.670162 CACTGCCAAGAAACCCACTG 59.330 55.000 0.00 0.00 0.00 3.66
107 108 1.109323 GCACTGCCAAGAAACCCACT 61.109 55.000 0.00 0.00 0.00 4.00
108 109 1.363807 GCACTGCCAAGAAACCCAC 59.636 57.895 0.00 0.00 0.00 4.61
109 110 2.192861 CGCACTGCCAAGAAACCCA 61.193 57.895 0.00 0.00 0.00 4.51
110 111 1.734388 AACGCACTGCCAAGAAACCC 61.734 55.000 0.00 0.00 0.00 4.11
111 112 0.594796 CAACGCACTGCCAAGAAACC 60.595 55.000 0.00 0.00 0.00 3.27
112 113 0.380378 TCAACGCACTGCCAAGAAAC 59.620 50.000 0.00 0.00 0.00 2.78
113 114 1.098869 TTCAACGCACTGCCAAGAAA 58.901 45.000 0.00 0.00 0.00 2.52
114 115 0.380378 GTTCAACGCACTGCCAAGAA 59.620 50.000 0.00 0.00 0.00 2.52
115 116 0.463654 AGTTCAACGCACTGCCAAGA 60.464 50.000 0.00 0.00 0.00 3.02
116 117 0.040958 GAGTTCAACGCACTGCCAAG 60.041 55.000 0.00 0.00 0.00 3.61
117 118 1.771073 CGAGTTCAACGCACTGCCAA 61.771 55.000 0.00 0.00 0.00 4.52
118 119 2.243957 CGAGTTCAACGCACTGCCA 61.244 57.895 0.00 0.00 0.00 4.92
119 120 2.551270 CGAGTTCAACGCACTGCC 59.449 61.111 0.00 0.00 0.00 4.85
126 127 1.347817 GAGGAGCAGCGAGTTCAACG 61.348 60.000 0.00 0.00 0.00 4.10
127 128 0.037790 AGAGGAGCAGCGAGTTCAAC 60.038 55.000 0.00 0.00 0.00 3.18
128 129 0.681733 AAGAGGAGCAGCGAGTTCAA 59.318 50.000 0.00 0.00 0.00 2.69
129 130 0.681733 AAAGAGGAGCAGCGAGTTCA 59.318 50.000 0.00 0.00 0.00 3.18
130 131 1.355005 GAAAGAGGAGCAGCGAGTTC 58.645 55.000 0.00 0.00 0.00 3.01
131 132 0.036858 GGAAAGAGGAGCAGCGAGTT 60.037 55.000 0.00 0.00 0.00 3.01
132 133 0.902516 AGGAAAGAGGAGCAGCGAGT 60.903 55.000 0.00 0.00 0.00 4.18
133 134 0.248843 AAGGAAAGAGGAGCAGCGAG 59.751 55.000 0.00 0.00 0.00 5.03
134 135 1.204941 GTAAGGAAAGAGGAGCAGCGA 59.795 52.381 0.00 0.00 0.00 4.93
135 136 1.205893 AGTAAGGAAAGAGGAGCAGCG 59.794 52.381 0.00 0.00 0.00 5.18
136 137 3.266636 GAAGTAAGGAAAGAGGAGCAGC 58.733 50.000 0.00 0.00 0.00 5.25
137 138 3.517500 AGGAAGTAAGGAAAGAGGAGCAG 59.482 47.826 0.00 0.00 0.00 4.24
138 139 3.261897 CAGGAAGTAAGGAAAGAGGAGCA 59.738 47.826 0.00 0.00 0.00 4.26
139 140 3.369997 CCAGGAAGTAAGGAAAGAGGAGC 60.370 52.174 0.00 0.00 0.00 4.70
140 141 3.369997 GCCAGGAAGTAAGGAAAGAGGAG 60.370 52.174 0.00 0.00 0.00 3.69
141 142 2.572104 GCCAGGAAGTAAGGAAAGAGGA 59.428 50.000 0.00 0.00 0.00 3.71
142 143 2.573915 AGCCAGGAAGTAAGGAAAGAGG 59.426 50.000 0.00 0.00 0.00 3.69
143 144 3.008485 ACAGCCAGGAAGTAAGGAAAGAG 59.992 47.826 0.00 0.00 0.00 2.85
144 145 2.979678 ACAGCCAGGAAGTAAGGAAAGA 59.020 45.455 0.00 0.00 0.00 2.52
145 146 3.425162 ACAGCCAGGAAGTAAGGAAAG 57.575 47.619 0.00 0.00 0.00 2.62
146 147 4.382685 CGATACAGCCAGGAAGTAAGGAAA 60.383 45.833 0.00 0.00 0.00 3.13
147 148 3.132289 CGATACAGCCAGGAAGTAAGGAA 59.868 47.826 0.00 0.00 0.00 3.36
148 149 2.693591 CGATACAGCCAGGAAGTAAGGA 59.306 50.000 0.00 0.00 0.00 3.36
149 150 2.224066 CCGATACAGCCAGGAAGTAAGG 60.224 54.545 0.00 0.00 0.00 2.69
150 151 2.693591 TCCGATACAGCCAGGAAGTAAG 59.306 50.000 0.00 0.00 0.00 2.34
151 152 2.693591 CTCCGATACAGCCAGGAAGTAA 59.306 50.000 0.00 0.00 31.67 2.24
152 153 2.092049 TCTCCGATACAGCCAGGAAGTA 60.092 50.000 0.00 0.00 31.67 2.24
153 154 1.115467 CTCCGATACAGCCAGGAAGT 58.885 55.000 0.00 0.00 31.67 3.01
154 155 1.067821 GTCTCCGATACAGCCAGGAAG 59.932 57.143 0.00 0.00 31.67 3.46
155 156 1.112113 GTCTCCGATACAGCCAGGAA 58.888 55.000 0.00 0.00 31.67 3.36
156 157 0.259065 AGTCTCCGATACAGCCAGGA 59.741 55.000 0.00 0.00 0.00 3.86
157 158 0.387202 CAGTCTCCGATACAGCCAGG 59.613 60.000 0.00 0.00 0.00 4.45
158 159 1.107114 ACAGTCTCCGATACAGCCAG 58.893 55.000 0.00 0.00 0.00 4.85
159 160 1.204704 CAACAGTCTCCGATACAGCCA 59.795 52.381 0.00 0.00 0.00 4.75
160 161 1.204941 ACAACAGTCTCCGATACAGCC 59.795 52.381 0.00 0.00 0.00 4.85
161 162 2.656560 ACAACAGTCTCCGATACAGC 57.343 50.000 0.00 0.00 0.00 4.40
162 163 5.749109 GGAAATACAACAGTCTCCGATACAG 59.251 44.000 0.00 0.00 0.00 2.74
163 164 5.657474 GGAAATACAACAGTCTCCGATACA 58.343 41.667 0.00 0.00 0.00 2.29
164 165 4.738740 CGGAAATACAACAGTCTCCGATAC 59.261 45.833 2.19 0.00 46.83 2.24
165 166 4.400251 ACGGAAATACAACAGTCTCCGATA 59.600 41.667 14.67 0.00 46.83 2.92
166 167 3.194968 ACGGAAATACAACAGTCTCCGAT 59.805 43.478 14.67 0.00 46.83 4.18
167 168 2.559668 ACGGAAATACAACAGTCTCCGA 59.440 45.455 14.67 0.00 46.83 4.55
169 170 6.980051 ATAAACGGAAATACAACAGTCTCC 57.020 37.500 0.00 0.00 0.00 3.71
181 182 9.443323 CCCTTTCCATTTAAAATAAACGGAAAT 57.557 29.630 18.07 0.00 39.57 2.17
182 183 7.878644 CCCCTTTCCATTTAAAATAAACGGAAA 59.121 33.333 17.24 17.24 38.40 3.13
183 184 7.387643 CCCCTTTCCATTTAAAATAAACGGAA 58.612 34.615 6.36 6.36 0.00 4.30
184 185 6.574662 GCCCCTTTCCATTTAAAATAAACGGA 60.575 38.462 0.00 0.00 0.00 4.69
185 186 5.583061 GCCCCTTTCCATTTAAAATAAACGG 59.417 40.000 0.00 0.00 0.00 4.44
186 187 6.091577 GTGCCCCTTTCCATTTAAAATAAACG 59.908 38.462 0.00 0.00 0.00 3.60
187 188 6.373216 GGTGCCCCTTTCCATTTAAAATAAAC 59.627 38.462 0.00 0.00 0.00 2.01
188 189 6.477253 GGTGCCCCTTTCCATTTAAAATAAA 58.523 36.000 0.00 0.00 0.00 1.40
189 190 5.045505 GGGTGCCCCTTTCCATTTAAAATAA 60.046 40.000 3.16 0.00 41.34 1.40
190 191 4.471747 GGGTGCCCCTTTCCATTTAAAATA 59.528 41.667 3.16 0.00 41.34 1.40
191 192 3.265737 GGGTGCCCCTTTCCATTTAAAAT 59.734 43.478 3.16 0.00 41.34 1.82
192 193 2.640332 GGGTGCCCCTTTCCATTTAAAA 59.360 45.455 3.16 0.00 41.34 1.52
193 194 2.261729 GGGTGCCCCTTTCCATTTAAA 58.738 47.619 3.16 0.00 41.34 1.52
194 195 1.945580 GGGTGCCCCTTTCCATTTAA 58.054 50.000 3.16 0.00 41.34 1.52
195 196 3.701800 GGGTGCCCCTTTCCATTTA 57.298 52.632 3.16 0.00 41.34 1.40
196 197 4.559148 GGGTGCCCCTTTCCATTT 57.441 55.556 3.16 0.00 41.34 2.32
206 207 4.607025 TTTGAACCGGGGGTGCCC 62.607 66.667 6.32 0.00 44.51 5.36
207 208 2.134933 TTTTTGAACCGGGGGTGCC 61.135 57.895 6.32 0.00 35.34 5.01
208 209 3.539842 TTTTTGAACCGGGGGTGC 58.460 55.556 6.32 0.00 35.34 5.01
224 225 5.096443 TCACAATCCAAAACCAGCTTTTT 57.904 34.783 0.00 0.00 28.85 1.94
225 226 4.751767 TCACAATCCAAAACCAGCTTTT 57.248 36.364 0.00 0.00 31.77 2.27
226 227 4.696455 CTTCACAATCCAAAACCAGCTTT 58.304 39.130 0.00 0.00 0.00 3.51
227 228 3.493176 GCTTCACAATCCAAAACCAGCTT 60.493 43.478 0.00 0.00 0.00 3.74
228 229 2.036346 GCTTCACAATCCAAAACCAGCT 59.964 45.455 0.00 0.00 0.00 4.24
229 230 2.224018 TGCTTCACAATCCAAAACCAGC 60.224 45.455 0.00 0.00 0.00 4.85
230 231 3.731652 TGCTTCACAATCCAAAACCAG 57.268 42.857 0.00 0.00 0.00 4.00
231 232 5.716228 AGATATGCTTCACAATCCAAAACCA 59.284 36.000 0.00 0.00 0.00 3.67
232 233 6.038356 CAGATATGCTTCACAATCCAAAACC 58.962 40.000 0.00 0.00 0.00 3.27
233 234 5.517770 GCAGATATGCTTCACAATCCAAAAC 59.482 40.000 4.74 0.00 0.00 2.43
234 235 5.185442 TGCAGATATGCTTCACAATCCAAAA 59.815 36.000 14.34 0.00 35.49 2.44
235 236 4.705991 TGCAGATATGCTTCACAATCCAAA 59.294 37.500 14.34 0.00 35.49 3.28
236 237 4.271661 TGCAGATATGCTTCACAATCCAA 58.728 39.130 14.34 0.00 35.49 3.53
237 238 3.888583 TGCAGATATGCTTCACAATCCA 58.111 40.909 14.34 0.00 35.49 3.41
238 239 5.449107 AATGCAGATATGCTTCACAATCC 57.551 39.130 14.34 0.00 35.49 3.01
239 240 7.813645 TGATAATGCAGATATGCTTCACAATC 58.186 34.615 14.34 9.11 35.49 2.67
240 241 7.447545 ACTGATAATGCAGATATGCTTCACAAT 59.552 33.333 14.34 0.00 39.20 2.71
241 242 6.769341 ACTGATAATGCAGATATGCTTCACAA 59.231 34.615 14.34 0.00 39.20 3.33
242 243 6.293698 ACTGATAATGCAGATATGCTTCACA 58.706 36.000 14.34 7.58 39.20 3.58
243 244 6.798315 ACTGATAATGCAGATATGCTTCAC 57.202 37.500 14.34 3.62 39.20 3.18
244 245 6.293790 GCAACTGATAATGCAGATATGCTTCA 60.294 38.462 14.34 10.05 42.12 3.02
245 246 6.072618 AGCAACTGATAATGCAGATATGCTTC 60.073 38.462 14.34 6.11 43.71 3.86
246 247 5.768662 AGCAACTGATAATGCAGATATGCTT 59.231 36.000 14.34 4.15 43.71 3.91
247 248 5.314529 AGCAACTGATAATGCAGATATGCT 58.685 37.500 14.34 13.71 44.95 3.79
248 249 5.624344 AGCAACTGATAATGCAGATATGC 57.376 39.130 5.09 5.09 44.95 3.14
249 250 7.645402 TCAAAGCAACTGATAATGCAGATATG 58.355 34.615 0.00 0.00 44.95 1.78
250 251 7.501559 ACTCAAAGCAACTGATAATGCAGATAT 59.498 33.333 0.00 0.00 44.95 1.63
251 252 6.825213 ACTCAAAGCAACTGATAATGCAGATA 59.175 34.615 0.00 0.00 44.95 1.98
252 253 5.651139 ACTCAAAGCAACTGATAATGCAGAT 59.349 36.000 0.00 0.00 44.95 2.90
253 254 5.005740 ACTCAAAGCAACTGATAATGCAGA 58.994 37.500 0.00 0.00 44.95 4.26
254 255 5.306532 ACTCAAAGCAACTGATAATGCAG 57.693 39.130 0.00 0.00 44.95 4.41
255 256 5.463286 CAACTCAAAGCAACTGATAATGCA 58.537 37.500 0.00 0.00 44.95 3.96
256 257 4.860907 CCAACTCAAAGCAACTGATAATGC 59.139 41.667 0.00 0.00 42.87 3.56
257 258 6.017400 ACCAACTCAAAGCAACTGATAATG 57.983 37.500 0.00 0.00 0.00 1.90
258 259 7.944729 ATACCAACTCAAAGCAACTGATAAT 57.055 32.000 0.00 0.00 0.00 1.28
259 260 7.230510 ACAATACCAACTCAAAGCAACTGATAA 59.769 33.333 0.00 0.00 0.00 1.75
260 261 6.714810 ACAATACCAACTCAAAGCAACTGATA 59.285 34.615 0.00 0.00 0.00 2.15
261 262 5.536161 ACAATACCAACTCAAAGCAACTGAT 59.464 36.000 0.00 0.00 0.00 2.90
262 263 4.887071 ACAATACCAACTCAAAGCAACTGA 59.113 37.500 0.00 0.00 0.00 3.41
263 264 5.186996 ACAATACCAACTCAAAGCAACTG 57.813 39.130 0.00 0.00 0.00 3.16
264 265 5.852282 AACAATACCAACTCAAAGCAACT 57.148 34.783 0.00 0.00 0.00 3.16
265 266 8.587952 AATTAACAATACCAACTCAAAGCAAC 57.412 30.769 0.00 0.00 0.00 4.17
266 267 9.606631 AAAATTAACAATACCAACTCAAAGCAA 57.393 25.926 0.00 0.00 0.00 3.91
303 304 3.370978 CACTCACACACGTCTCTGTTTTT 59.629 43.478 0.00 0.00 0.00 1.94
304 305 2.930040 CACTCACACACGTCTCTGTTTT 59.070 45.455 0.00 0.00 0.00 2.43
305 306 2.094182 ACACTCACACACGTCTCTGTTT 60.094 45.455 0.00 0.00 0.00 2.83
306 307 1.476891 ACACTCACACACGTCTCTGTT 59.523 47.619 0.00 0.00 0.00 3.16
307 308 1.103803 ACACTCACACACGTCTCTGT 58.896 50.000 0.00 0.00 0.00 3.41
308 309 1.202302 ACACACTCACACACGTCTCTG 60.202 52.381 0.00 0.00 0.00 3.35
309 310 1.103803 ACACACTCACACACGTCTCT 58.896 50.000 0.00 0.00 0.00 3.10
310 311 1.200483 CACACACTCACACACGTCTC 58.800 55.000 0.00 0.00 0.00 3.36
311 312 0.530744 ACACACACTCACACACGTCT 59.469 50.000 0.00 0.00 0.00 4.18
312 313 0.645355 CACACACACTCACACACGTC 59.355 55.000 0.00 0.00 0.00 4.34
313 314 0.037697 ACACACACACTCACACACGT 60.038 50.000 0.00 0.00 0.00 4.49
314 315 0.369931 CACACACACACTCACACACG 59.630 55.000 0.00 0.00 0.00 4.49
315 316 1.128507 CACACACACACACTCACACAC 59.871 52.381 0.00 0.00 0.00 3.82
316 317 1.270571 ACACACACACACACTCACACA 60.271 47.619 0.00 0.00 0.00 3.72
317 318 1.128507 CACACACACACACACTCACAC 59.871 52.381 0.00 0.00 0.00 3.82
318 319 1.270571 ACACACACACACACACTCACA 60.271 47.619 0.00 0.00 0.00 3.58
319 320 1.128507 CACACACACACACACACTCAC 59.871 52.381 0.00 0.00 0.00 3.51
320 321 1.270571 ACACACACACACACACACTCA 60.271 47.619 0.00 0.00 0.00 3.41
321 322 1.128507 CACACACACACACACACACTC 59.871 52.381 0.00 0.00 0.00 3.51
322 323 1.155889 CACACACACACACACACACT 58.844 50.000 0.00 0.00 0.00 3.55
323 324 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
324 325 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
325 326 1.152510 TGACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
326 327 1.533299 GTTGACACACACACACACACA 59.467 47.619 0.00 0.00 0.00 3.72
327 328 1.135803 GGTTGACACACACACACACAC 60.136 52.381 0.00 0.00 0.00 3.82
328 329 1.160989 GGTTGACACACACACACACA 58.839 50.000 0.00 0.00 0.00 3.72
329 330 1.448985 AGGTTGACACACACACACAC 58.551 50.000 0.00 0.00 0.00 3.82
330 331 2.235155 AGTAGGTTGACACACACACACA 59.765 45.455 0.00 0.00 0.00 3.72
331 332 2.864343 GAGTAGGTTGACACACACACAC 59.136 50.000 0.00 0.00 0.00 3.82
332 333 2.159014 GGAGTAGGTTGACACACACACA 60.159 50.000 0.00 0.00 0.00 3.72
333 334 2.102588 AGGAGTAGGTTGACACACACAC 59.897 50.000 0.00 0.00 0.00 3.82
334 335 2.394632 AGGAGTAGGTTGACACACACA 58.605 47.619 0.00 0.00 0.00 3.72
335 336 3.131396 CAAGGAGTAGGTTGACACACAC 58.869 50.000 0.00 0.00 0.00 3.82
336 337 2.769663 ACAAGGAGTAGGTTGACACACA 59.230 45.455 0.00 0.00 0.00 3.72
337 338 3.470645 ACAAGGAGTAGGTTGACACAC 57.529 47.619 0.00 0.00 0.00 3.82
338 339 4.497291 AAACAAGGAGTAGGTTGACACA 57.503 40.909 0.00 0.00 0.00 3.72
358 359 9.595823 CCGTAGATGAATTTTACTCTTTCCTAA 57.404 33.333 0.00 0.00 0.00 2.69
359 360 8.755977 ACCGTAGATGAATTTTACTCTTTCCTA 58.244 33.333 0.00 0.00 0.00 2.94
360 361 7.621796 ACCGTAGATGAATTTTACTCTTTCCT 58.378 34.615 0.00 0.00 0.00 3.36
361 362 7.845066 ACCGTAGATGAATTTTACTCTTTCC 57.155 36.000 0.00 0.00 0.00 3.13
362 363 8.815189 GGTACCGTAGATGAATTTTACTCTTTC 58.185 37.037 0.00 0.00 0.00 2.62
419 420 2.894902 TGCGTGAGTTCTTGTGTACAA 58.105 42.857 0.00 0.00 0.00 2.41
597 598 4.104383 TGGGGATTTCTATCTCATTGGC 57.896 45.455 0.00 0.00 32.50 4.52
627 629 2.431057 GCGAGAACTAGGGATTTGGAGA 59.569 50.000 0.00 0.00 0.00 3.71
823 955 3.004024 TCCTCTGTGTTCGAAACGTAC 57.996 47.619 0.00 0.00 0.00 3.67
1056 1203 0.957395 CTGTTGCTCCAACGGCATCT 60.957 55.000 4.20 0.00 46.13 2.90
1138 1286 3.866449 GCCAAAGCAGCTCTACTAGTTGT 60.866 47.826 0.00 0.00 38.60 3.32
1364 1543 8.704668 ACTTCTTCTTCTTCTTCTTCTTCTTCT 58.295 33.333 0.00 0.00 0.00 2.85
1365 1544 8.764287 CACTTCTTCTTCTTCTTCTTCTTCTTC 58.236 37.037 0.00 0.00 0.00 2.87
1366 1545 8.482128 TCACTTCTTCTTCTTCTTCTTCTTCTT 58.518 33.333 0.00 0.00 0.00 2.52
1367 1546 8.017418 TCACTTCTTCTTCTTCTTCTTCTTCT 57.983 34.615 0.00 0.00 0.00 2.85
1368 1547 7.384932 CCTCACTTCTTCTTCTTCTTCTTCTTC 59.615 40.741 0.00 0.00 0.00 2.87
1369 1548 7.070571 TCCTCACTTCTTCTTCTTCTTCTTCTT 59.929 37.037 0.00 0.00 0.00 2.52
1370 1549 6.553100 TCCTCACTTCTTCTTCTTCTTCTTCT 59.447 38.462 0.00 0.00 0.00 2.85
1371 1550 6.754193 TCCTCACTTCTTCTTCTTCTTCTTC 58.246 40.000 0.00 0.00 0.00 2.87
1372 1551 6.739331 TCCTCACTTCTTCTTCTTCTTCTT 57.261 37.500 0.00 0.00 0.00 2.52
1373 1552 6.239572 CCTTCCTCACTTCTTCTTCTTCTTCT 60.240 42.308 0.00 0.00 0.00 2.85
1374 1553 5.931724 CCTTCCTCACTTCTTCTTCTTCTTC 59.068 44.000 0.00 0.00 0.00 2.87
1375 1554 5.604650 TCCTTCCTCACTTCTTCTTCTTCTT 59.395 40.000 0.00 0.00 0.00 2.52
1376 1555 5.151454 TCCTTCCTCACTTCTTCTTCTTCT 58.849 41.667 0.00 0.00 0.00 2.85
1377 1556 5.011635 ACTCCTTCCTCACTTCTTCTTCTTC 59.988 44.000 0.00 0.00 0.00 2.87
1378 1557 4.904853 ACTCCTTCCTCACTTCTTCTTCTT 59.095 41.667 0.00 0.00 0.00 2.52
1379 1558 4.488770 ACTCCTTCCTCACTTCTTCTTCT 58.511 43.478 0.00 0.00 0.00 2.85
1380 1559 4.882842 ACTCCTTCCTCACTTCTTCTTC 57.117 45.455 0.00 0.00 0.00 2.87
1381 1560 5.245075 CAGTACTCCTTCCTCACTTCTTCTT 59.755 44.000 0.00 0.00 0.00 2.52
1382 1561 4.770010 CAGTACTCCTTCCTCACTTCTTCT 59.230 45.833 0.00 0.00 0.00 2.85
1383 1562 4.525100 ACAGTACTCCTTCCTCACTTCTTC 59.475 45.833 0.00 0.00 0.00 2.87
1384 1563 4.484912 ACAGTACTCCTTCCTCACTTCTT 58.515 43.478 0.00 0.00 0.00 2.52
1393 1572 6.660094 TCTTCTTCTTCTACAGTACTCCTTCC 59.340 42.308 0.00 0.00 0.00 3.46
1525 1705 9.507329 CATAGCCATGTCCTAACATTAAACTAT 57.493 33.333 0.00 0.00 43.74 2.12
1944 2178 9.030452 ACTACAGAATCTATGAGACTCTTTGTT 57.970 33.333 3.68 0.00 26.66 2.83
2047 2327 8.030106 AGTAAGAGTACTCTTTCAGCAATGTAC 58.970 37.037 36.24 24.78 46.95 2.90
2143 2423 2.892852 CAAAGAAACATGGAGGAAGCCA 59.107 45.455 0.00 0.00 43.23 4.75
2144 2424 2.893489 ACAAAGAAACATGGAGGAAGCC 59.107 45.455 0.00 0.00 0.00 4.35
2244 2539 2.026822 TCCTAGCAAAGAAGCAGGAAGG 60.027 50.000 0.00 0.00 38.21 3.46
2284 2579 2.260247 GCCATTGCTGCACAGAAGA 58.740 52.632 0.00 0.00 33.53 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.