Multiple sequence alignment - TraesCS4D01G274700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G274700 chr4D 100.000 4622 0 0 1 4622 445340945 445336324 0.000000e+00 8536.0
1 TraesCS4D01G274700 chr4A 94.652 4076 120 33 597 4622 22731515 22727488 0.000000e+00 6229.0
2 TraesCS4D01G274700 chr4A 90.154 325 29 2 3931 4255 615367889 615367568 1.990000e-113 420.0
3 TraesCS4D01G274700 chr4B 94.230 2877 118 19 1691 4537 554816944 554814086 0.000000e+00 4349.0
4 TraesCS4D01G274700 chr4B 85.943 1437 145 31 180 1588 554818349 554816942 0.000000e+00 1482.0
5 TraesCS4D01G274700 chr4B 82.413 688 86 21 430 1090 554820121 554819442 6.710000e-158 568.0
6 TraesCS4D01G274700 chr4B 94.253 87 5 0 4536 4622 554813885 554813799 2.900000e-27 134.0
7 TraesCS4D01G274700 chr4B 88.889 72 7 1 885 955 554818448 554818377 2.290000e-13 87.9
8 TraesCS4D01G274700 chr2D 83.408 1796 213 46 1836 3560 349561374 349559593 0.000000e+00 1587.0
9 TraesCS4D01G274700 chr2B 83.278 1794 219 43 1833 3560 415315611 415313833 0.000000e+00 1576.0
10 TraesCS4D01G274700 chr2A 83.267 1769 208 59 1833 3541 464856090 464854350 0.000000e+00 1546.0
11 TraesCS4D01G274700 chr7A 89.941 338 28 2 3929 4260 271628865 271628528 9.190000e-117 431.0
12 TraesCS4D01G274700 chr5D 87.834 337 39 2 3930 4265 434719069 434718734 1.210000e-105 394.0
13 TraesCS4D01G274700 chr6D 87.915 331 40 0 3930 4260 414210349 414210019 1.560000e-104 390.0
14 TraesCS4D01G274700 chr3D 87.240 337 43 0 3929 4265 18817028 18817364 7.250000e-103 385.0
15 TraesCS4D01G274700 chrUn 87.576 330 33 7 3929 4253 21942154 21942480 4.370000e-100 375.0
16 TraesCS4D01G274700 chr7B 85.672 335 40 7 3930 4260 35269433 35269103 3.420000e-91 346.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G274700 chr4D 445336324 445340945 4621 True 8536.00 8536 100.0000 1 4622 1 chr4D.!!$R1 4621
1 TraesCS4D01G274700 chr4A 22727488 22731515 4027 True 6229.00 6229 94.6520 597 4622 1 chr4A.!!$R1 4025
2 TraesCS4D01G274700 chr4B 554813799 554820121 6322 True 1324.18 4349 89.1456 180 4622 5 chr4B.!!$R1 4442
3 TraesCS4D01G274700 chr2D 349559593 349561374 1781 True 1587.00 1587 83.4080 1836 3560 1 chr2D.!!$R1 1724
4 TraesCS4D01G274700 chr2B 415313833 415315611 1778 True 1576.00 1576 83.2780 1833 3560 1 chr2B.!!$R1 1727
5 TraesCS4D01G274700 chr2A 464854350 464856090 1740 True 1546.00 1546 83.2670 1833 3541 1 chr2A.!!$R1 1708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 360 0.041576 GACCGTTTTGAGTTCACGCC 60.042 55.000 0.00 0.0 32.43 5.68 F
377 378 0.109723 CCCGACCAAAAACCCTCAGA 59.890 55.000 0.00 0.0 0.00 3.27 F
400 401 0.529992 GGAATCCACCACCGTCGATC 60.530 60.000 0.00 0.0 0.00 3.69 F
743 766 1.005394 CGGTGGCCGTTTCTACACT 60.005 57.895 0.00 0.0 42.73 3.55 F
1762 3793 1.021390 CGGCAGACACCTCCATGAAC 61.021 60.000 0.00 0.0 0.00 3.18 F
2100 4148 1.598676 GCGACGCGTATTGGAGTATCA 60.599 52.381 13.97 0.0 36.25 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1319 3347 0.107017 CCCGATGGCATCCAGAGTTT 60.107 55.000 21.20 0.00 36.75 2.66 R
1645 3674 0.264657 TCTAGCCCCTCTATGCACCA 59.735 55.000 0.00 0.00 0.00 4.17 R
1913 3950 2.747460 GGCATGGCAGTCTCGCAA 60.747 61.111 15.47 0.00 0.00 4.85 R
1977 4014 2.756840 TCATTCAGGAGCACACAGAG 57.243 50.000 0.00 0.00 0.00 3.35 R
3276 5417 1.734465 GTTCTGATTCTGGTCTTGCCG 59.266 52.381 0.00 0.00 41.21 5.69 R
4072 6233 1.366111 GCTATTTTCGCCGGCTGTGA 61.366 55.000 26.68 12.15 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.871238 AACGAGCTGTAGAAGAGAAATAATAAA 57.129 29.630 0.00 0.00 0.00 1.40
30 31 9.061435 AGCTGTAGAAGAGAAATAATAAATGCC 57.939 33.333 0.00 0.00 0.00 4.40
31 32 8.293157 GCTGTAGAAGAGAAATAATAAATGCCC 58.707 37.037 0.00 0.00 0.00 5.36
32 33 9.342308 CTGTAGAAGAGAAATAATAAATGCCCA 57.658 33.333 0.00 0.00 0.00 5.36
33 34 9.866655 TGTAGAAGAGAAATAATAAATGCCCAT 57.133 29.630 0.00 0.00 0.00 4.00
39 40 9.646522 AGAGAAATAATAAATGCCCATTACTGT 57.353 29.630 0.00 0.00 0.00 3.55
44 45 9.612066 AATAATAAATGCCCATTACTGTTTTGG 57.388 29.630 0.00 2.61 0.00 3.28
45 46 6.865834 ATAAATGCCCATTACTGTTTTGGA 57.134 33.333 9.53 0.00 31.94 3.53
46 47 5.760484 AAATGCCCATTACTGTTTTGGAT 57.240 34.783 9.53 0.00 31.94 3.41
47 48 5.760484 AATGCCCATTACTGTTTTGGATT 57.240 34.783 9.53 1.76 31.94 3.01
48 49 5.760484 ATGCCCATTACTGTTTTGGATTT 57.240 34.783 9.53 0.00 31.94 2.17
49 50 5.559148 TGCCCATTACTGTTTTGGATTTT 57.441 34.783 9.53 0.00 31.94 1.82
50 51 5.303971 TGCCCATTACTGTTTTGGATTTTG 58.696 37.500 9.53 0.00 31.94 2.44
51 52 4.694982 GCCCATTACTGTTTTGGATTTTGG 59.305 41.667 9.53 0.00 31.94 3.28
52 53 5.512232 GCCCATTACTGTTTTGGATTTTGGA 60.512 40.000 9.53 0.00 31.94 3.53
53 54 6.529220 CCCATTACTGTTTTGGATTTTGGAA 58.471 36.000 9.53 0.00 31.94 3.53
54 55 6.995091 CCCATTACTGTTTTGGATTTTGGAAA 59.005 34.615 9.53 0.00 31.94 3.13
55 56 7.665145 CCCATTACTGTTTTGGATTTTGGAAAT 59.335 33.333 9.53 0.00 31.94 2.17
56 57 8.505625 CCATTACTGTTTTGGATTTTGGAAATG 58.494 33.333 3.34 0.00 31.94 2.32
57 58 7.489574 TTACTGTTTTGGATTTTGGAAATGC 57.510 32.000 0.00 0.00 0.00 3.56
58 59 4.821260 ACTGTTTTGGATTTTGGAAATGCC 59.179 37.500 3.08 0.00 37.10 4.40
72 73 6.543430 TGGAAATGCCATTACTATTTTGCT 57.457 33.333 0.00 0.00 43.33 3.91
73 74 6.339730 TGGAAATGCCATTACTATTTTGCTG 58.660 36.000 0.00 0.00 43.33 4.41
74 75 5.754890 GGAAATGCCATTACTATTTTGCTGG 59.245 40.000 0.00 0.00 36.34 4.85
76 77 2.430332 TGCCATTACTATTTTGCTGGCC 59.570 45.455 8.74 0.00 46.71 5.36
77 78 2.543653 GCCATTACTATTTTGCTGGCCG 60.544 50.000 0.00 0.00 42.59 6.13
78 79 2.687935 CCATTACTATTTTGCTGGCCGT 59.312 45.455 0.00 0.00 0.00 5.68
79 80 3.489059 CCATTACTATTTTGCTGGCCGTG 60.489 47.826 0.00 0.00 0.00 4.94
80 81 1.745232 TACTATTTTGCTGGCCGTGG 58.255 50.000 0.00 0.00 0.00 4.94
81 82 0.251165 ACTATTTTGCTGGCCGTGGT 60.251 50.000 0.00 0.00 0.00 4.16
82 83 0.171007 CTATTTTGCTGGCCGTGGTG 59.829 55.000 0.00 0.00 0.00 4.17
83 84 1.872197 TATTTTGCTGGCCGTGGTGC 61.872 55.000 0.00 0.00 0.00 5.01
93 94 2.631428 CGTGGTGCGGTGACAAAG 59.369 61.111 0.00 0.00 36.85 2.77
94 95 2.177580 CGTGGTGCGGTGACAAAGT 61.178 57.895 0.00 0.00 36.85 2.66
95 96 0.876777 CGTGGTGCGGTGACAAAGTA 60.877 55.000 0.00 0.00 36.85 2.24
96 97 1.301423 GTGGTGCGGTGACAAAGTAA 58.699 50.000 0.00 0.00 0.00 2.24
97 98 1.671845 GTGGTGCGGTGACAAAGTAAA 59.328 47.619 0.00 0.00 0.00 2.01
98 99 1.944024 TGGTGCGGTGACAAAGTAAAG 59.056 47.619 0.00 0.00 0.00 1.85
99 100 1.265905 GGTGCGGTGACAAAGTAAAGG 59.734 52.381 0.00 0.00 0.00 3.11
100 101 2.215196 GTGCGGTGACAAAGTAAAGGA 58.785 47.619 0.00 0.00 0.00 3.36
101 102 2.614983 GTGCGGTGACAAAGTAAAGGAA 59.385 45.455 0.00 0.00 0.00 3.36
102 103 2.875933 TGCGGTGACAAAGTAAAGGAAG 59.124 45.455 0.00 0.00 0.00 3.46
103 104 3.135994 GCGGTGACAAAGTAAAGGAAGA 58.864 45.455 0.00 0.00 0.00 2.87
104 105 3.186613 GCGGTGACAAAGTAAAGGAAGAG 59.813 47.826 0.00 0.00 0.00 2.85
105 106 3.186613 CGGTGACAAAGTAAAGGAAGAGC 59.813 47.826 0.00 0.00 0.00 4.09
106 107 3.186613 GGTGACAAAGTAAAGGAAGAGCG 59.813 47.826 0.00 0.00 0.00 5.03
107 108 2.806244 TGACAAAGTAAAGGAAGAGCGC 59.194 45.455 0.00 0.00 0.00 5.92
108 109 1.798813 ACAAAGTAAAGGAAGAGCGCG 59.201 47.619 0.00 0.00 0.00 6.86
109 110 2.066262 CAAAGTAAAGGAAGAGCGCGA 58.934 47.619 12.10 0.00 0.00 5.87
110 111 1.997669 AAGTAAAGGAAGAGCGCGAG 58.002 50.000 12.10 0.00 0.00 5.03
111 112 1.174783 AGTAAAGGAAGAGCGCGAGA 58.825 50.000 12.10 0.00 0.00 4.04
112 113 1.133407 AGTAAAGGAAGAGCGCGAGAG 59.867 52.381 12.10 0.00 0.00 3.20
129 130 3.041940 GCACGTAGCGCCAACACT 61.042 61.111 2.29 0.00 0.00 3.55
130 131 3.011760 GCACGTAGCGCCAACACTC 62.012 63.158 2.29 0.00 0.00 3.51
131 132 2.430244 ACGTAGCGCCAACACTCG 60.430 61.111 2.29 1.21 0.00 4.18
132 133 3.179265 CGTAGCGCCAACACTCGG 61.179 66.667 2.29 0.00 0.00 4.63
133 134 2.813908 GTAGCGCCAACACTCGGG 60.814 66.667 2.29 0.00 0.00 5.14
134 135 4.077184 TAGCGCCAACACTCGGGG 62.077 66.667 2.29 0.00 39.40 5.73
137 138 4.077184 CGCCAACACTCGGGGCTA 62.077 66.667 0.00 0.00 45.53 3.93
138 139 2.349755 GCCAACACTCGGGGCTAA 59.650 61.111 0.00 0.00 44.32 3.09
139 140 1.745489 GCCAACACTCGGGGCTAAG 60.745 63.158 0.00 0.00 44.32 2.18
140 141 1.980052 CCAACACTCGGGGCTAAGA 59.020 57.895 0.00 0.00 0.00 2.10
141 142 0.108138 CCAACACTCGGGGCTAAGAG 60.108 60.000 0.00 3.61 40.16 2.85
143 144 1.822990 CAACACTCGGGGCTAAGAGTA 59.177 52.381 9.03 0.00 44.98 2.59
144 145 2.431057 CAACACTCGGGGCTAAGAGTAT 59.569 50.000 9.03 0.00 44.98 2.12
145 146 2.308690 ACACTCGGGGCTAAGAGTATC 58.691 52.381 9.03 0.00 44.98 2.24
165 166 9.311916 GAGTATCTCCAATAGCAGCTATATTTG 57.688 37.037 15.61 10.81 0.00 2.32
166 167 8.820831 AGTATCTCCAATAGCAGCTATATTTGT 58.179 33.333 15.61 0.00 0.00 2.83
169 170 8.422577 TCTCCAATAGCAGCTATATTTGTAGA 57.577 34.615 15.61 9.85 0.00 2.59
170 171 8.307483 TCTCCAATAGCAGCTATATTTGTAGAC 58.693 37.037 15.61 0.00 0.00 2.59
171 172 7.962441 TCCAATAGCAGCTATATTTGTAGACA 58.038 34.615 15.61 0.00 0.00 3.41
172 173 8.597167 TCCAATAGCAGCTATATTTGTAGACAT 58.403 33.333 15.61 0.00 0.00 3.06
173 174 8.663025 CCAATAGCAGCTATATTTGTAGACATG 58.337 37.037 15.61 5.50 0.00 3.21
174 175 9.428097 CAATAGCAGCTATATTTGTAGACATGA 57.572 33.333 15.61 0.00 0.00 3.07
175 176 9.650539 AATAGCAGCTATATTTGTAGACATGAG 57.349 33.333 15.61 0.00 0.00 2.90
176 177 6.462500 AGCAGCTATATTTGTAGACATGAGG 58.538 40.000 0.00 0.00 0.00 3.86
177 178 5.121454 GCAGCTATATTTGTAGACATGAGGC 59.879 44.000 0.00 0.00 0.00 4.70
178 179 6.226052 CAGCTATATTTGTAGACATGAGGCA 58.774 40.000 0.00 0.00 0.00 4.75
179 180 6.877855 CAGCTATATTTGTAGACATGAGGCAT 59.122 38.462 0.00 0.00 0.00 4.40
180 181 7.389884 CAGCTATATTTGTAGACATGAGGCATT 59.610 37.037 0.00 0.00 0.00 3.56
181 182 7.941238 AGCTATATTTGTAGACATGAGGCATTT 59.059 33.333 0.00 0.00 0.00 2.32
182 183 8.571336 GCTATATTTGTAGACATGAGGCATTTT 58.429 33.333 0.00 0.00 0.00 1.82
186 187 6.757897 TTGTAGACATGAGGCATTTTTAGG 57.242 37.500 0.00 0.00 0.00 2.69
187 188 5.192927 TGTAGACATGAGGCATTTTTAGGG 58.807 41.667 0.00 0.00 0.00 3.53
188 189 3.026694 AGACATGAGGCATTTTTAGGGC 58.973 45.455 0.00 0.00 0.00 5.19
189 190 2.760092 GACATGAGGCATTTTTAGGGCA 59.240 45.455 0.00 0.00 0.00 5.36
190 191 2.497273 ACATGAGGCATTTTTAGGGCAC 59.503 45.455 0.00 0.00 0.00 5.01
191 192 2.300956 TGAGGCATTTTTAGGGCACA 57.699 45.000 0.00 0.00 0.00 4.57
192 193 2.603021 TGAGGCATTTTTAGGGCACAA 58.397 42.857 0.00 0.00 0.00 3.33
193 194 2.562298 TGAGGCATTTTTAGGGCACAAG 59.438 45.455 0.00 0.00 0.00 3.16
194 195 2.825532 GAGGCATTTTTAGGGCACAAGA 59.174 45.455 0.00 0.00 0.00 3.02
195 196 2.827921 AGGCATTTTTAGGGCACAAGAG 59.172 45.455 0.00 0.00 0.00 2.85
196 197 2.094026 GGCATTTTTAGGGCACAAGAGG 60.094 50.000 0.00 0.00 0.00 3.69
197 198 2.094026 GCATTTTTAGGGCACAAGAGGG 60.094 50.000 0.00 0.00 0.00 4.30
198 199 1.627864 TTTTTAGGGCACAAGAGGGC 58.372 50.000 0.00 0.00 0.00 5.19
199 200 0.480690 TTTTAGGGCACAAGAGGGCA 59.519 50.000 0.00 0.00 0.00 5.36
200 201 0.480690 TTTAGGGCACAAGAGGGCAA 59.519 50.000 0.00 0.00 0.00 4.52
201 202 0.480690 TTAGGGCACAAGAGGGCAAA 59.519 50.000 0.00 0.00 0.00 3.68
202 203 0.480690 TAGGGCACAAGAGGGCAAAA 59.519 50.000 0.00 0.00 0.00 2.44
203 204 0.398381 AGGGCACAAGAGGGCAAAAA 60.398 50.000 0.00 0.00 0.00 1.94
204 205 0.249868 GGGCACAAGAGGGCAAAAAC 60.250 55.000 0.00 0.00 0.00 2.43
205 206 0.249868 GGCACAAGAGGGCAAAAACC 60.250 55.000 0.00 0.00 0.00 3.27
206 207 0.463620 GCACAAGAGGGCAAAAACCA 59.536 50.000 0.00 0.00 0.00 3.67
207 208 1.070601 GCACAAGAGGGCAAAAACCAT 59.929 47.619 0.00 0.00 0.00 3.55
208 209 2.867647 GCACAAGAGGGCAAAAACCATC 60.868 50.000 0.00 0.00 40.87 3.51
209 210 1.970640 ACAAGAGGGCAAAAACCATCC 59.029 47.619 0.00 0.00 41.50 3.51
210 211 2.250924 CAAGAGGGCAAAAACCATCCT 58.749 47.619 0.00 0.00 41.50 3.24
211 212 2.634453 CAAGAGGGCAAAAACCATCCTT 59.366 45.455 0.00 0.00 41.50 3.36
212 213 2.529632 AGAGGGCAAAAACCATCCTTC 58.470 47.619 0.00 0.00 41.50 3.46
213 214 2.158325 AGAGGGCAAAAACCATCCTTCA 60.158 45.455 0.00 0.00 41.50 3.02
214 215 2.632512 GAGGGCAAAAACCATCCTTCAA 59.367 45.455 0.00 0.00 34.39 2.69
215 216 2.368548 AGGGCAAAAACCATCCTTCAAC 59.631 45.455 0.00 0.00 0.00 3.18
216 217 2.403259 GGCAAAAACCATCCTTCAACG 58.597 47.619 0.00 0.00 0.00 4.10
217 218 2.403259 GCAAAAACCATCCTTCAACGG 58.597 47.619 0.00 0.00 0.00 4.44
218 219 2.223947 GCAAAAACCATCCTTCAACGGT 60.224 45.455 0.00 0.00 0.00 4.83
219 220 3.739830 GCAAAAACCATCCTTCAACGGTT 60.740 43.478 0.00 0.00 43.55 4.44
220 221 3.726291 AAAACCATCCTTCAACGGTTG 57.274 42.857 14.62 14.62 40.84 3.77
221 222 0.958822 AACCATCCTTCAACGGTTGC 59.041 50.000 15.89 0.00 40.22 4.17
222 223 0.893727 ACCATCCTTCAACGGTTGCC 60.894 55.000 15.89 0.00 0.00 4.52
223 224 1.595093 CCATCCTTCAACGGTTGCCC 61.595 60.000 15.89 0.00 0.00 5.36
224 225 0.893270 CATCCTTCAACGGTTGCCCA 60.893 55.000 15.89 2.00 0.00 5.36
225 226 0.178975 ATCCTTCAACGGTTGCCCAA 60.179 50.000 15.89 4.82 0.00 4.12
226 227 0.178975 TCCTTCAACGGTTGCCCAAT 60.179 50.000 15.89 0.00 0.00 3.16
227 228 0.243636 CCTTCAACGGTTGCCCAATC 59.756 55.000 15.89 0.00 0.00 2.67
228 229 0.958091 CTTCAACGGTTGCCCAATCA 59.042 50.000 15.89 0.00 0.00 2.57
229 230 1.545582 CTTCAACGGTTGCCCAATCAT 59.454 47.619 15.89 0.00 0.00 2.45
230 231 2.498644 TCAACGGTTGCCCAATCATA 57.501 45.000 15.89 0.00 0.00 2.15
231 232 2.796557 TCAACGGTTGCCCAATCATAA 58.203 42.857 15.89 0.00 0.00 1.90
232 233 3.360867 TCAACGGTTGCCCAATCATAAT 58.639 40.909 15.89 0.00 0.00 1.28
233 234 3.766591 TCAACGGTTGCCCAATCATAATT 59.233 39.130 15.89 0.00 0.00 1.40
234 235 4.221703 TCAACGGTTGCCCAATCATAATTT 59.778 37.500 15.89 0.00 0.00 1.82
235 236 4.817318 ACGGTTGCCCAATCATAATTTT 57.183 36.364 0.00 0.00 0.00 1.82
236 237 5.159273 ACGGTTGCCCAATCATAATTTTT 57.841 34.783 0.00 0.00 0.00 1.94
268 269 7.793927 AAAAATTCGGGCAATCTTAAAAACA 57.206 28.000 0.00 0.00 0.00 2.83
269 270 6.779115 AAATTCGGGCAATCTTAAAAACAC 57.221 33.333 0.00 0.00 0.00 3.32
270 271 3.926821 TCGGGCAATCTTAAAAACACC 57.073 42.857 0.00 0.00 0.00 4.16
271 272 3.223435 TCGGGCAATCTTAAAAACACCA 58.777 40.909 0.00 0.00 0.00 4.17
272 273 3.004944 TCGGGCAATCTTAAAAACACCAC 59.995 43.478 0.00 0.00 0.00 4.16
273 274 3.313690 GGGCAATCTTAAAAACACCACG 58.686 45.455 0.00 0.00 0.00 4.94
274 275 3.243602 GGGCAATCTTAAAAACACCACGT 60.244 43.478 0.00 0.00 0.00 4.49
275 276 4.364860 GGCAATCTTAAAAACACCACGTT 58.635 39.130 0.00 0.00 40.50 3.99
276 277 4.208253 GGCAATCTTAAAAACACCACGTTG 59.792 41.667 0.00 0.00 38.07 4.10
277 278 4.317769 GCAATCTTAAAAACACCACGTTGC 60.318 41.667 0.00 0.00 38.07 4.17
278 279 4.640789 ATCTTAAAAACACCACGTTGCA 57.359 36.364 0.00 0.00 38.07 4.08
279 280 4.436242 TCTTAAAAACACCACGTTGCAA 57.564 36.364 0.00 0.00 38.07 4.08
280 281 4.806330 TCTTAAAAACACCACGTTGCAAA 58.194 34.783 0.00 0.00 38.07 3.68
281 282 5.227908 TCTTAAAAACACCACGTTGCAAAA 58.772 33.333 0.00 0.00 38.07 2.44
282 283 5.694910 TCTTAAAAACACCACGTTGCAAAAA 59.305 32.000 0.00 0.00 38.07 1.94
283 284 6.369065 TCTTAAAAACACCACGTTGCAAAAAT 59.631 30.769 0.00 0.00 38.07 1.82
284 285 7.544566 TCTTAAAAACACCACGTTGCAAAAATA 59.455 29.630 0.00 0.00 38.07 1.40
285 286 5.457650 AAAACACCACGTTGCAAAAATAC 57.542 34.783 0.00 0.00 38.07 1.89
286 287 3.784701 ACACCACGTTGCAAAAATACA 57.215 38.095 0.00 0.00 0.00 2.29
287 288 4.111375 ACACCACGTTGCAAAAATACAA 57.889 36.364 0.00 0.00 0.00 2.41
288 289 3.860536 ACACCACGTTGCAAAAATACAAC 59.139 39.130 0.00 0.00 42.15 3.32
289 290 3.859961 CACCACGTTGCAAAAATACAACA 59.140 39.130 0.00 0.00 45.08 3.33
290 291 3.860536 ACCACGTTGCAAAAATACAACAC 59.139 39.130 0.00 0.00 45.08 3.32
291 292 4.109050 CCACGTTGCAAAAATACAACACT 58.891 39.130 0.00 0.00 45.08 3.55
292 293 4.564769 CCACGTTGCAAAAATACAACACTT 59.435 37.500 0.00 0.00 45.08 3.16
293 294 5.276161 CCACGTTGCAAAAATACAACACTTC 60.276 40.000 0.00 0.00 45.08 3.01
294 295 5.287274 CACGTTGCAAAAATACAACACTTCA 59.713 36.000 0.00 0.00 45.08 3.02
295 296 5.514914 ACGTTGCAAAAATACAACACTTCAG 59.485 36.000 0.00 0.00 45.08 3.02
296 297 5.554324 CGTTGCAAAAATACAACACTTCAGC 60.554 40.000 0.00 0.00 45.08 4.26
297 298 5.261209 TGCAAAAATACAACACTTCAGCT 57.739 34.783 0.00 0.00 0.00 4.24
298 299 5.042593 TGCAAAAATACAACACTTCAGCTG 58.957 37.500 7.63 7.63 0.00 4.24
299 300 4.084900 GCAAAAATACAACACTTCAGCTGC 60.085 41.667 9.47 0.00 0.00 5.25
300 301 5.284079 CAAAAATACAACACTTCAGCTGCT 58.716 37.500 9.47 0.00 0.00 4.24
301 302 4.494350 AAATACAACACTTCAGCTGCTG 57.506 40.909 23.31 23.31 0.00 4.41
302 303 1.229428 TACAACACTTCAGCTGCTGC 58.771 50.000 24.38 7.62 40.05 5.25
303 304 1.285023 CAACACTTCAGCTGCTGCC 59.715 57.895 24.38 0.00 40.80 4.85
304 305 1.152902 AACACTTCAGCTGCTGCCA 60.153 52.632 24.38 12.38 40.80 4.92
305 306 0.538977 AACACTTCAGCTGCTGCCAT 60.539 50.000 24.38 8.99 40.80 4.40
306 307 0.325933 ACACTTCAGCTGCTGCCATA 59.674 50.000 24.38 4.63 40.80 2.74
307 308 1.271543 ACACTTCAGCTGCTGCCATAA 60.272 47.619 24.38 12.44 40.80 1.90
308 309 1.814394 CACTTCAGCTGCTGCCATAAA 59.186 47.619 24.38 12.08 40.80 1.40
309 310 2.089980 ACTTCAGCTGCTGCCATAAAG 58.910 47.619 24.38 21.89 40.80 1.85
310 311 2.089980 CTTCAGCTGCTGCCATAAAGT 58.910 47.619 24.38 0.00 40.80 2.66
311 312 1.742761 TCAGCTGCTGCCATAAAGTC 58.257 50.000 24.38 0.00 40.80 3.01
312 313 1.003464 TCAGCTGCTGCCATAAAGTCA 59.997 47.619 24.38 0.32 40.80 3.41
313 314 1.131883 CAGCTGCTGCCATAAAGTCAC 59.868 52.381 17.73 0.00 40.80 3.67
314 315 1.004044 AGCTGCTGCCATAAAGTCACT 59.996 47.619 12.44 0.00 40.80 3.41
315 316 1.399791 GCTGCTGCCATAAAGTCACTC 59.600 52.381 3.85 0.00 0.00 3.51
316 317 1.662629 CTGCTGCCATAAAGTCACTCG 59.337 52.381 0.00 0.00 0.00 4.18
317 318 1.009829 GCTGCCATAAAGTCACTCGG 58.990 55.000 0.00 0.00 0.00 4.63
318 319 1.009829 CTGCCATAAAGTCACTCGGC 58.990 55.000 0.00 0.00 40.02 5.54
319 320 0.613260 TGCCATAAAGTCACTCGGCT 59.387 50.000 8.50 0.00 40.27 5.52
320 321 1.291132 GCCATAAAGTCACTCGGCTC 58.709 55.000 0.00 0.00 36.58 4.70
321 322 1.941325 CCATAAAGTCACTCGGCTCC 58.059 55.000 0.00 0.00 0.00 4.70
322 323 1.207089 CCATAAAGTCACTCGGCTCCA 59.793 52.381 0.00 0.00 0.00 3.86
323 324 2.354704 CCATAAAGTCACTCGGCTCCAA 60.355 50.000 0.00 0.00 0.00 3.53
324 325 2.743636 TAAAGTCACTCGGCTCCAAG 57.256 50.000 0.00 0.00 0.00 3.61
325 326 0.603975 AAAGTCACTCGGCTCCAAGC 60.604 55.000 0.00 0.00 41.46 4.01
326 327 1.758440 AAGTCACTCGGCTCCAAGCA 61.758 55.000 0.86 0.00 44.75 3.91
327 328 1.739562 GTCACTCGGCTCCAAGCAG 60.740 63.158 0.86 0.00 44.75 4.24
328 329 1.908299 TCACTCGGCTCCAAGCAGA 60.908 57.895 0.86 1.46 44.75 4.26
329 330 1.739562 CACTCGGCTCCAAGCAGAC 60.740 63.158 0.86 0.00 44.75 3.51
331 332 4.742201 TCGGCTCCAAGCAGACGC 62.742 66.667 0.86 0.00 45.27 5.19
335 336 4.379243 CTCCAAGCAGACGCCCGT 62.379 66.667 0.00 0.00 39.83 5.28
336 337 4.680237 TCCAAGCAGACGCCCGTG 62.680 66.667 0.00 0.00 39.83 4.94
348 349 3.273834 CCCGTGCGTGACCGTTTT 61.274 61.111 0.00 0.00 36.15 2.43
349 350 2.052590 CCGTGCGTGACCGTTTTG 60.053 61.111 0.00 0.00 36.15 2.44
350 351 2.526993 CCGTGCGTGACCGTTTTGA 61.527 57.895 0.00 0.00 36.15 2.69
351 352 1.083657 CGTGCGTGACCGTTTTGAG 60.084 57.895 0.00 0.00 36.15 3.02
352 353 1.758319 CGTGCGTGACCGTTTTGAGT 61.758 55.000 0.00 0.00 36.15 3.41
353 354 0.375803 GTGCGTGACCGTTTTGAGTT 59.624 50.000 0.00 0.00 36.15 3.01
354 355 0.653636 TGCGTGACCGTTTTGAGTTC 59.346 50.000 0.00 0.00 36.15 3.01
355 356 0.653636 GCGTGACCGTTTTGAGTTCA 59.346 50.000 0.00 0.00 36.15 3.18
356 357 1.593793 GCGTGACCGTTTTGAGTTCAC 60.594 52.381 0.00 0.00 36.15 3.18
357 358 1.331680 CGTGACCGTTTTGAGTTCACG 60.332 52.381 7.91 7.91 42.20 4.35
358 359 0.653636 TGACCGTTTTGAGTTCACGC 59.346 50.000 0.00 0.00 32.43 5.34
359 360 0.041576 GACCGTTTTGAGTTCACGCC 60.042 55.000 0.00 0.00 32.43 5.68
360 361 1.281656 CCGTTTTGAGTTCACGCCC 59.718 57.895 0.00 0.00 32.43 6.13
361 362 1.083015 CGTTTTGAGTTCACGCCCG 60.083 57.895 0.00 0.00 0.00 6.13
362 363 1.492319 CGTTTTGAGTTCACGCCCGA 61.492 55.000 0.00 0.00 0.00 5.14
363 364 0.041576 GTTTTGAGTTCACGCCCGAC 60.042 55.000 0.00 0.00 0.00 4.79
364 365 1.161563 TTTTGAGTTCACGCCCGACC 61.162 55.000 0.00 0.00 0.00 4.79
365 366 2.313051 TTTGAGTTCACGCCCGACCA 62.313 55.000 0.00 0.00 0.00 4.02
366 367 2.029964 GAGTTCACGCCCGACCAA 59.970 61.111 0.00 0.00 0.00 3.67
367 368 1.595929 GAGTTCACGCCCGACCAAA 60.596 57.895 0.00 0.00 0.00 3.28
368 369 1.153127 AGTTCACGCCCGACCAAAA 60.153 52.632 0.00 0.00 0.00 2.44
369 370 0.748729 AGTTCACGCCCGACCAAAAA 60.749 50.000 0.00 0.00 0.00 1.94
370 371 0.593008 GTTCACGCCCGACCAAAAAC 60.593 55.000 0.00 0.00 0.00 2.43
371 372 1.726533 TTCACGCCCGACCAAAAACC 61.727 55.000 0.00 0.00 0.00 3.27
372 373 2.908428 ACGCCCGACCAAAAACCC 60.908 61.111 0.00 0.00 0.00 4.11
373 374 2.596338 CGCCCGACCAAAAACCCT 60.596 61.111 0.00 0.00 0.00 4.34
374 375 2.622962 CGCCCGACCAAAAACCCTC 61.623 63.158 0.00 0.00 0.00 4.30
375 376 1.529713 GCCCGACCAAAAACCCTCA 60.530 57.895 0.00 0.00 0.00 3.86
376 377 1.524008 GCCCGACCAAAAACCCTCAG 61.524 60.000 0.00 0.00 0.00 3.35
377 378 0.109723 CCCGACCAAAAACCCTCAGA 59.890 55.000 0.00 0.00 0.00 3.27
378 379 1.271926 CCCGACCAAAAACCCTCAGAT 60.272 52.381 0.00 0.00 0.00 2.90
379 380 2.084546 CCGACCAAAAACCCTCAGATC 58.915 52.381 0.00 0.00 0.00 2.75
380 381 2.290323 CCGACCAAAAACCCTCAGATCT 60.290 50.000 0.00 0.00 0.00 2.75
381 382 2.744202 CGACCAAAAACCCTCAGATCTG 59.256 50.000 17.07 17.07 0.00 2.90
382 383 3.084786 GACCAAAAACCCTCAGATCTGG 58.915 50.000 22.42 12.75 0.00 3.86
383 384 2.716424 ACCAAAAACCCTCAGATCTGGA 59.284 45.455 22.42 8.56 0.00 3.86
384 385 3.140144 ACCAAAAACCCTCAGATCTGGAA 59.860 43.478 22.42 3.33 0.00 3.53
385 386 4.202716 ACCAAAAACCCTCAGATCTGGAAT 60.203 41.667 22.42 3.56 0.00 3.01
386 387 4.400567 CCAAAAACCCTCAGATCTGGAATC 59.599 45.833 22.42 0.00 0.00 2.52
387 388 3.941704 AAACCCTCAGATCTGGAATCC 57.058 47.619 22.42 0.00 0.00 3.01
388 389 2.575921 ACCCTCAGATCTGGAATCCA 57.424 50.000 22.42 0.48 0.00 3.41
389 390 2.122768 ACCCTCAGATCTGGAATCCAC 58.877 52.381 22.42 0.00 0.00 4.02
390 391 1.419387 CCCTCAGATCTGGAATCCACC 59.581 57.143 22.42 0.00 0.00 4.61
391 392 2.121948 CCTCAGATCTGGAATCCACCA 58.878 52.381 22.42 0.00 38.33 4.17
392 393 2.158842 CCTCAGATCTGGAATCCACCAC 60.159 54.545 22.42 0.00 35.91 4.16
393 394 1.839994 TCAGATCTGGAATCCACCACC 59.160 52.381 22.42 0.00 35.91 4.61
394 395 0.833287 AGATCTGGAATCCACCACCG 59.167 55.000 0.00 0.00 35.91 4.94
395 396 0.541863 GATCTGGAATCCACCACCGT 59.458 55.000 0.00 0.00 35.91 4.83
396 397 0.541863 ATCTGGAATCCACCACCGTC 59.458 55.000 0.00 0.00 35.91 4.79
397 398 1.447838 CTGGAATCCACCACCGTCG 60.448 63.158 0.00 0.00 35.91 5.12
398 399 1.884075 CTGGAATCCACCACCGTCGA 61.884 60.000 0.00 0.00 35.91 4.20
399 400 1.261938 TGGAATCCACCACCGTCGAT 61.262 55.000 0.00 0.00 34.77 3.59
400 401 0.529992 GGAATCCACCACCGTCGATC 60.530 60.000 0.00 0.00 0.00 3.69
401 402 0.529992 GAATCCACCACCGTCGATCC 60.530 60.000 0.00 0.00 0.00 3.36
402 403 2.292794 AATCCACCACCGTCGATCCG 62.293 60.000 0.00 0.00 0.00 4.18
409 410 4.685026 CCGTCGATCCGCCGCTAG 62.685 72.222 0.00 0.00 0.00 3.42
410 411 3.646976 CGTCGATCCGCCGCTAGA 61.647 66.667 0.00 0.00 0.00 2.43
411 412 2.252855 GTCGATCCGCCGCTAGAG 59.747 66.667 0.00 0.00 0.00 2.43
412 413 2.978565 TCGATCCGCCGCTAGAGG 60.979 66.667 8.37 8.37 0.00 3.69
457 458 2.515901 CCGATTCCATCCCACCCC 59.484 66.667 0.00 0.00 0.00 4.95
458 459 2.515901 CGATTCCATCCCACCCCC 59.484 66.667 0.00 0.00 0.00 5.40
476 477 4.828925 GCTGCTCCTCTCCGCCAC 62.829 72.222 0.00 0.00 0.00 5.01
494 495 3.399181 CCCGCCTAGCCTTCACCA 61.399 66.667 0.00 0.00 0.00 4.17
495 496 2.746375 CCCGCCTAGCCTTCACCAT 61.746 63.158 0.00 0.00 0.00 3.55
504 505 3.967332 AGCCTTCACCATTCCAATTTG 57.033 42.857 0.00 0.00 0.00 2.32
568 579 4.682553 CCAGTAATGGCCATGGCA 57.317 55.556 36.56 23.14 44.11 4.92
582 593 2.031163 GGCAGCTCGGTTGTGTCT 59.969 61.111 0.00 0.00 0.00 3.41
586 597 1.983972 CAGCTCGGTTGTGTCTCTAC 58.016 55.000 0.00 0.00 0.00 2.59
587 598 1.269723 CAGCTCGGTTGTGTCTCTACA 59.730 52.381 0.00 0.00 0.00 2.74
695 715 2.976840 GCATCTTTCGGCCGCACAA 61.977 57.895 23.51 12.19 0.00 3.33
743 766 1.005394 CGGTGGCCGTTTCTACACT 60.005 57.895 0.00 0.00 42.73 3.55
889 918 7.998964 AGAAATAAAGAAACTTGAGACAAGGGA 59.001 33.333 14.51 0.00 0.00 4.20
1165 3193 1.359475 GCTAGTCGTGTCCGATCCC 59.641 63.158 0.00 0.00 46.30 3.85
1319 3347 4.177783 TGTCGATCTTATTGCACGCTTTA 58.822 39.130 0.00 0.00 0.00 1.85
1567 3596 4.332828 ACATAGGGGAAGTTTGCAGTTAC 58.667 43.478 0.00 0.00 0.00 2.50
1606 3635 6.183361 GGAGCCAAGATATTAGTTAGGGGAAA 60.183 42.308 0.00 0.00 0.00 3.13
1645 3674 5.147330 TGAGTATTCCTCGTGTGATTTGT 57.853 39.130 0.00 0.00 43.64 2.83
1762 3793 1.021390 CGGCAGACACCTCCATGAAC 61.021 60.000 0.00 0.00 0.00 3.18
1913 3950 6.794534 AGATTACTGGGAAATCAAACTCCTT 58.205 36.000 0.00 0.00 36.09 3.36
2100 4148 1.598676 GCGACGCGTATTGGAGTATCA 60.599 52.381 13.97 0.00 36.25 2.15
2215 4263 5.864628 AAGTTCGTCTCCTTTATGCTTTC 57.135 39.130 0.00 0.00 0.00 2.62
2403 4465 5.928264 GTCATGCCTTTCTGTTTGCTAATTT 59.072 36.000 0.00 0.00 0.00 1.82
2526 4588 7.097192 TCTACTACACACCTGATCAAATGTTC 58.903 38.462 8.45 0.00 0.00 3.18
2539 4601 3.938963 TCAAATGTTCGTTCCTATCTGGC 59.061 43.478 0.00 0.00 35.26 4.85
2783 4864 6.371548 TCAGTATTTGTCCTCGAAATTCTTGG 59.628 38.462 0.00 0.00 0.00 3.61
2882 5016 2.127251 GTGCCTTGCTAAAACAACTGC 58.873 47.619 0.00 0.00 0.00 4.40
2913 5047 8.687242 TGTTCTATCTATCTACAACAGGAACAG 58.313 37.037 0.00 0.00 35.83 3.16
2914 5048 7.278461 TCTATCTATCTACAACAGGAACAGC 57.722 40.000 0.00 0.00 0.00 4.40
3060 5198 7.493971 ACACACTTGAATCTCTAGTTCATATGC 59.506 37.037 0.00 0.00 35.68 3.14
3449 5593 4.734398 TTTTCTTGGTCACAATTGTGCT 57.266 36.364 29.84 0.00 45.25 4.40
3596 5750 7.042658 GCACTCCTTCCGTAAGTTCATTTATAG 60.043 40.741 0.00 0.00 0.00 1.31
3679 5837 7.042119 GCCTGAAGCAGAGAAAACTATCTATTC 60.042 40.741 0.00 0.00 42.97 1.75
3829 5987 0.246635 ATGCACCTCACACCTACGTC 59.753 55.000 0.00 0.00 0.00 4.34
3858 6016 2.650322 GTCACCCTTGACCAAACAGAA 58.350 47.619 0.00 0.00 45.77 3.02
3912 6070 4.264373 AGTTATAATGCCACCACCCAAT 57.736 40.909 0.00 0.00 0.00 3.16
3928 6086 3.525199 ACCCAATCAGAGTTAAGGCAGAT 59.475 43.478 0.00 0.00 0.00 2.90
3929 6087 4.018050 ACCCAATCAGAGTTAAGGCAGATT 60.018 41.667 0.00 0.00 0.00 2.40
4134 6298 4.082136 ACACCTAGCCTATTATTAGCTCGC 60.082 45.833 0.00 0.00 0.00 5.03
4146 6310 0.880278 TAGCTCGCCATCCAAATCGC 60.880 55.000 0.00 0.00 0.00 4.58
4293 6459 2.499205 CGCCTGGCTTCGGTGATA 59.501 61.111 17.92 0.00 33.93 2.15
4296 6462 1.680338 GCCTGGCTTCGGTGATATTT 58.320 50.000 12.43 0.00 0.00 1.40
4447 6618 1.351017 CACCACCACCTACATGACCTT 59.649 52.381 0.00 0.00 0.00 3.50
4484 6655 2.957491 AGCAAGATCTTCAGAGACGG 57.043 50.000 4.57 0.00 33.99 4.79
4505 6676 4.261572 CGGCTTCAAGAAGGAAAAATGACA 60.262 41.667 11.44 0.00 38.80 3.58
4559 6932 3.694072 CCCCGTCAATCAATAAGCTTTCA 59.306 43.478 3.20 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.871238 TTTATTATTTCTCTTCTACAGCTCGTT 57.129 29.630 0.00 0.00 0.00 3.85
4 5 9.061435 GGCATTTATTATTTCTCTTCTACAGCT 57.939 33.333 0.00 0.00 0.00 4.24
5 6 8.293157 GGGCATTTATTATTTCTCTTCTACAGC 58.707 37.037 0.00 0.00 0.00 4.40
6 7 9.342308 TGGGCATTTATTATTTCTCTTCTACAG 57.658 33.333 0.00 0.00 0.00 2.74
7 8 9.866655 ATGGGCATTTATTATTTCTCTTCTACA 57.133 29.630 0.00 0.00 0.00 2.74
13 14 9.646522 ACAGTAATGGGCATTTATTATTTCTCT 57.353 29.630 0.00 0.00 32.50 3.10
18 19 9.612066 CCAAAACAGTAATGGGCATTTATTATT 57.388 29.630 0.00 0.00 32.50 1.40
19 20 8.986991 TCCAAAACAGTAATGGGCATTTATTAT 58.013 29.630 0.00 0.00 34.89 1.28
20 21 8.367660 TCCAAAACAGTAATGGGCATTTATTA 57.632 30.769 0.00 0.00 34.89 0.98
21 22 7.251321 TCCAAAACAGTAATGGGCATTTATT 57.749 32.000 0.00 0.00 34.89 1.40
22 23 6.865834 TCCAAAACAGTAATGGGCATTTAT 57.134 33.333 0.00 0.00 34.89 1.40
23 24 6.865834 ATCCAAAACAGTAATGGGCATTTA 57.134 33.333 0.00 0.00 34.89 1.40
24 25 5.760484 ATCCAAAACAGTAATGGGCATTT 57.240 34.783 0.00 0.00 34.89 2.32
25 26 5.760484 AATCCAAAACAGTAATGGGCATT 57.240 34.783 0.00 0.00 34.89 3.56
26 27 5.760484 AAATCCAAAACAGTAATGGGCAT 57.240 34.783 0.00 0.00 34.89 4.40
27 28 5.303971 CAAAATCCAAAACAGTAATGGGCA 58.696 37.500 0.00 0.00 34.89 5.36
28 29 4.694982 CCAAAATCCAAAACAGTAATGGGC 59.305 41.667 0.00 0.00 34.89 5.36
29 30 6.107901 TCCAAAATCCAAAACAGTAATGGG 57.892 37.500 0.00 0.00 34.89 4.00
30 31 8.505625 CATTTCCAAAATCCAAAACAGTAATGG 58.494 33.333 0.00 0.00 35.49 3.16
31 32 8.016801 GCATTTCCAAAATCCAAAACAGTAATG 58.983 33.333 0.00 0.00 0.00 1.90
32 33 7.174772 GGCATTTCCAAAATCCAAAACAGTAAT 59.825 33.333 0.00 0.00 34.01 1.89
33 34 6.484977 GGCATTTCCAAAATCCAAAACAGTAA 59.515 34.615 0.00 0.00 34.01 2.24
34 35 5.994668 GGCATTTCCAAAATCCAAAACAGTA 59.005 36.000 0.00 0.00 34.01 2.74
35 36 4.821260 GGCATTTCCAAAATCCAAAACAGT 59.179 37.500 0.00 0.00 34.01 3.55
36 37 4.820716 TGGCATTTCCAAAATCCAAAACAG 59.179 37.500 0.00 0.00 43.21 3.16
37 38 4.785301 TGGCATTTCCAAAATCCAAAACA 58.215 34.783 0.00 0.00 43.21 2.83
50 51 5.754890 CCAGCAAAATAGTAATGGCATTTCC 59.245 40.000 19.21 9.58 0.00 3.13
51 52 6.833342 CCAGCAAAATAGTAATGGCATTTC 57.167 37.500 19.21 13.50 0.00 2.17
57 58 2.687935 ACGGCCAGCAAAATAGTAATGG 59.312 45.455 2.24 0.00 0.00 3.16
58 59 3.489059 CCACGGCCAGCAAAATAGTAATG 60.489 47.826 2.24 0.00 0.00 1.90
59 60 2.687935 CCACGGCCAGCAAAATAGTAAT 59.312 45.455 2.24 0.00 0.00 1.89
60 61 2.088423 CCACGGCCAGCAAAATAGTAA 58.912 47.619 2.24 0.00 0.00 2.24
61 62 1.003812 ACCACGGCCAGCAAAATAGTA 59.996 47.619 2.24 0.00 0.00 1.82
62 63 0.251165 ACCACGGCCAGCAAAATAGT 60.251 50.000 2.24 0.00 0.00 2.12
63 64 0.171007 CACCACGGCCAGCAAAATAG 59.829 55.000 2.24 0.00 0.00 1.73
64 65 1.872197 GCACCACGGCCAGCAAAATA 61.872 55.000 2.24 0.00 0.00 1.40
65 66 3.050339 CACCACGGCCAGCAAAAT 58.950 55.556 2.24 0.00 0.00 1.82
66 67 3.910490 GCACCACGGCCAGCAAAA 61.910 61.111 2.24 0.00 0.00 2.44
76 77 0.876777 TACTTTGTCACCGCACCACG 60.877 55.000 0.00 0.00 43.15 4.94
77 78 1.301423 TTACTTTGTCACCGCACCAC 58.699 50.000 0.00 0.00 0.00 4.16
78 79 1.944024 CTTTACTTTGTCACCGCACCA 59.056 47.619 0.00 0.00 0.00 4.17
79 80 1.265905 CCTTTACTTTGTCACCGCACC 59.734 52.381 0.00 0.00 0.00 5.01
80 81 2.215196 TCCTTTACTTTGTCACCGCAC 58.785 47.619 0.00 0.00 0.00 5.34
81 82 2.623878 TCCTTTACTTTGTCACCGCA 57.376 45.000 0.00 0.00 0.00 5.69
82 83 3.135994 TCTTCCTTTACTTTGTCACCGC 58.864 45.455 0.00 0.00 0.00 5.68
83 84 3.186613 GCTCTTCCTTTACTTTGTCACCG 59.813 47.826 0.00 0.00 0.00 4.94
84 85 3.186613 CGCTCTTCCTTTACTTTGTCACC 59.813 47.826 0.00 0.00 0.00 4.02
85 86 3.364068 GCGCTCTTCCTTTACTTTGTCAC 60.364 47.826 0.00 0.00 0.00 3.67
86 87 2.806244 GCGCTCTTCCTTTACTTTGTCA 59.194 45.455 0.00 0.00 0.00 3.58
87 88 2.159827 CGCGCTCTTCCTTTACTTTGTC 60.160 50.000 5.56 0.00 0.00 3.18
88 89 1.798813 CGCGCTCTTCCTTTACTTTGT 59.201 47.619 5.56 0.00 0.00 2.83
89 90 2.066262 TCGCGCTCTTCCTTTACTTTG 58.934 47.619 5.56 0.00 0.00 2.77
90 91 2.029290 TCTCGCGCTCTTCCTTTACTTT 60.029 45.455 5.56 0.00 0.00 2.66
91 92 1.544691 TCTCGCGCTCTTCCTTTACTT 59.455 47.619 5.56 0.00 0.00 2.24
92 93 1.133407 CTCTCGCGCTCTTCCTTTACT 59.867 52.381 5.56 0.00 0.00 2.24
93 94 1.551145 CTCTCGCGCTCTTCCTTTAC 58.449 55.000 5.56 0.00 0.00 2.01
94 95 0.179134 GCTCTCGCGCTCTTCCTTTA 60.179 55.000 5.56 0.00 0.00 1.85
95 96 1.446966 GCTCTCGCGCTCTTCCTTT 60.447 57.895 5.56 0.00 0.00 3.11
96 97 2.183046 GCTCTCGCGCTCTTCCTT 59.817 61.111 5.56 0.00 0.00 3.36
97 98 3.064945 TGCTCTCGCGCTCTTCCT 61.065 61.111 5.56 0.00 39.65 3.36
98 99 2.883253 GTGCTCTCGCGCTCTTCC 60.883 66.667 5.56 0.00 43.21 3.46
99 100 3.243892 CGTGCTCTCGCGCTCTTC 61.244 66.667 5.56 0.00 44.32 2.87
107 108 3.964221 TTGGCGCTACGTGCTCTCG 62.964 63.158 7.64 0.00 39.23 4.04
108 109 2.126071 TTGGCGCTACGTGCTCTC 60.126 61.111 7.64 0.00 39.23 3.20
109 110 2.432628 GTTGGCGCTACGTGCTCT 60.433 61.111 7.64 0.00 39.23 4.09
110 111 2.736995 TGTTGGCGCTACGTGCTC 60.737 61.111 7.64 0.00 39.23 4.26
111 112 3.041940 GTGTTGGCGCTACGTGCT 61.042 61.111 7.64 0.00 39.23 4.40
112 113 3.011760 GAGTGTTGGCGCTACGTGC 62.012 63.158 7.64 0.00 35.28 5.34
113 114 2.716828 CGAGTGTTGGCGCTACGTG 61.717 63.158 7.64 0.00 35.28 4.49
114 115 2.430244 CGAGTGTTGGCGCTACGT 60.430 61.111 7.64 0.00 35.28 3.57
115 116 3.179265 CCGAGTGTTGGCGCTACG 61.179 66.667 7.64 0.00 35.28 3.51
116 117 2.813908 CCCGAGTGTTGGCGCTAC 60.814 66.667 7.64 6.82 35.28 3.58
117 118 4.077184 CCCCGAGTGTTGGCGCTA 62.077 66.667 7.64 0.00 35.28 4.26
121 122 1.745489 CTTAGCCCCGAGTGTTGGC 60.745 63.158 0.00 0.00 45.70 4.52
122 123 0.108138 CTCTTAGCCCCGAGTGTTGG 60.108 60.000 0.00 0.00 0.00 3.77
123 124 0.608640 ACTCTTAGCCCCGAGTGTTG 59.391 55.000 0.00 0.00 38.94 3.33
124 125 2.226962 TACTCTTAGCCCCGAGTGTT 57.773 50.000 9.01 0.00 40.47 3.32
125 126 2.091775 AGATACTCTTAGCCCCGAGTGT 60.092 50.000 9.01 3.43 40.47 3.55
126 127 2.554893 GAGATACTCTTAGCCCCGAGTG 59.445 54.545 9.01 0.00 40.47 3.51
127 128 2.489437 GGAGATACTCTTAGCCCCGAGT 60.489 54.545 5.00 5.00 42.67 4.18
128 129 2.164338 GGAGATACTCTTAGCCCCGAG 58.836 57.143 0.00 0.00 0.00 4.63
129 130 1.497716 TGGAGATACTCTTAGCCCCGA 59.502 52.381 0.00 0.00 0.00 5.14
130 131 1.996798 TGGAGATACTCTTAGCCCCG 58.003 55.000 0.00 0.00 0.00 5.73
131 132 4.081365 GCTATTGGAGATACTCTTAGCCCC 60.081 50.000 0.00 0.00 32.73 5.80
132 133 4.528596 TGCTATTGGAGATACTCTTAGCCC 59.471 45.833 17.04 0.00 35.15 5.19
133 134 5.719173 CTGCTATTGGAGATACTCTTAGCC 58.281 45.833 17.04 0.00 35.15 3.93
134 135 5.047377 AGCTGCTATTGGAGATACTCTTAGC 60.047 44.000 0.00 14.95 35.81 3.09
135 136 6.588719 AGCTGCTATTGGAGATACTCTTAG 57.411 41.667 0.00 0.00 33.10 2.18
136 137 9.928618 ATATAGCTGCTATTGGAGATACTCTTA 57.071 33.333 25.63 4.66 35.47 2.10
137 138 8.837099 ATATAGCTGCTATTGGAGATACTCTT 57.163 34.615 25.63 1.49 35.47 2.85
138 139 8.837099 AATATAGCTGCTATTGGAGATACTCT 57.163 34.615 25.63 1.92 35.47 3.24
139 140 9.311916 CAAATATAGCTGCTATTGGAGATACTC 57.688 37.037 25.63 0.00 35.47 2.59
140 141 8.820831 ACAAATATAGCTGCTATTGGAGATACT 58.179 33.333 25.63 2.63 35.47 2.12
143 144 9.040259 TCTACAAATATAGCTGCTATTGGAGAT 57.960 33.333 25.63 11.15 33.10 2.75
144 145 8.307483 GTCTACAAATATAGCTGCTATTGGAGA 58.693 37.037 25.63 24.19 33.10 3.71
145 146 8.090831 TGTCTACAAATATAGCTGCTATTGGAG 58.909 37.037 25.63 22.59 34.56 3.86
146 147 7.962441 TGTCTACAAATATAGCTGCTATTGGA 58.038 34.615 25.63 15.22 0.00 3.53
147 148 8.663025 CATGTCTACAAATATAGCTGCTATTGG 58.337 37.037 25.63 12.04 0.00 3.16
148 149 9.428097 TCATGTCTACAAATATAGCTGCTATTG 57.572 33.333 25.63 20.28 0.00 1.90
149 150 9.650539 CTCATGTCTACAAATATAGCTGCTATT 57.349 33.333 25.63 9.53 0.00 1.73
150 151 8.256605 CCTCATGTCTACAAATATAGCTGCTAT 58.743 37.037 24.15 24.15 0.00 2.97
151 152 7.606349 CCTCATGTCTACAAATATAGCTGCTA 58.394 38.462 12.40 12.40 0.00 3.49
152 153 6.462500 CCTCATGTCTACAAATATAGCTGCT 58.538 40.000 7.57 7.57 0.00 4.24
153 154 5.121454 GCCTCATGTCTACAAATATAGCTGC 59.879 44.000 0.00 0.00 0.00 5.25
154 155 6.226052 TGCCTCATGTCTACAAATATAGCTG 58.774 40.000 0.00 0.00 0.00 4.24
155 156 6.425210 TGCCTCATGTCTACAAATATAGCT 57.575 37.500 0.00 0.00 0.00 3.32
156 157 7.678947 AATGCCTCATGTCTACAAATATAGC 57.321 36.000 0.00 0.00 0.00 2.97
160 161 8.902806 CCTAAAAATGCCTCATGTCTACAAATA 58.097 33.333 0.00 0.00 0.00 1.40
161 162 7.147846 CCCTAAAAATGCCTCATGTCTACAAAT 60.148 37.037 0.00 0.00 0.00 2.32
162 163 6.152661 CCCTAAAAATGCCTCATGTCTACAAA 59.847 38.462 0.00 0.00 0.00 2.83
163 164 5.652014 CCCTAAAAATGCCTCATGTCTACAA 59.348 40.000 0.00 0.00 0.00 2.41
164 165 5.192927 CCCTAAAAATGCCTCATGTCTACA 58.807 41.667 0.00 0.00 0.00 2.74
165 166 4.036852 GCCCTAAAAATGCCTCATGTCTAC 59.963 45.833 0.00 0.00 0.00 2.59
166 167 4.207165 GCCCTAAAAATGCCTCATGTCTA 58.793 43.478 0.00 0.00 0.00 2.59
167 168 3.026694 GCCCTAAAAATGCCTCATGTCT 58.973 45.455 0.00 0.00 0.00 3.41
168 169 2.760092 TGCCCTAAAAATGCCTCATGTC 59.240 45.455 0.00 0.00 0.00 3.06
169 170 2.497273 GTGCCCTAAAAATGCCTCATGT 59.503 45.455 0.00 0.00 0.00 3.21
170 171 2.496871 TGTGCCCTAAAAATGCCTCATG 59.503 45.455 0.00 0.00 0.00 3.07
171 172 2.818921 TGTGCCCTAAAAATGCCTCAT 58.181 42.857 0.00 0.00 0.00 2.90
172 173 2.300956 TGTGCCCTAAAAATGCCTCA 57.699 45.000 0.00 0.00 0.00 3.86
173 174 2.825532 TCTTGTGCCCTAAAAATGCCTC 59.174 45.455 0.00 0.00 0.00 4.70
174 175 2.827921 CTCTTGTGCCCTAAAAATGCCT 59.172 45.455 0.00 0.00 0.00 4.75
175 176 2.094026 CCTCTTGTGCCCTAAAAATGCC 60.094 50.000 0.00 0.00 0.00 4.40
176 177 2.094026 CCCTCTTGTGCCCTAAAAATGC 60.094 50.000 0.00 0.00 0.00 3.56
177 178 2.094026 GCCCTCTTGTGCCCTAAAAATG 60.094 50.000 0.00 0.00 0.00 2.32
178 179 2.179427 GCCCTCTTGTGCCCTAAAAAT 58.821 47.619 0.00 0.00 0.00 1.82
179 180 1.133325 TGCCCTCTTGTGCCCTAAAAA 60.133 47.619 0.00 0.00 0.00 1.94
180 181 0.480690 TGCCCTCTTGTGCCCTAAAA 59.519 50.000 0.00 0.00 0.00 1.52
181 182 0.480690 TTGCCCTCTTGTGCCCTAAA 59.519 50.000 0.00 0.00 0.00 1.85
182 183 0.480690 TTTGCCCTCTTGTGCCCTAA 59.519 50.000 0.00 0.00 0.00 2.69
183 184 0.480690 TTTTGCCCTCTTGTGCCCTA 59.519 50.000 0.00 0.00 0.00 3.53
184 185 0.398381 TTTTTGCCCTCTTGTGCCCT 60.398 50.000 0.00 0.00 0.00 5.19
185 186 0.249868 GTTTTTGCCCTCTTGTGCCC 60.250 55.000 0.00 0.00 0.00 5.36
186 187 0.249868 GGTTTTTGCCCTCTTGTGCC 60.250 55.000 0.00 0.00 0.00 5.01
187 188 0.463620 TGGTTTTTGCCCTCTTGTGC 59.536 50.000 0.00 0.00 0.00 4.57
188 189 2.289010 GGATGGTTTTTGCCCTCTTGTG 60.289 50.000 0.00 0.00 0.00 3.33
189 190 1.970640 GGATGGTTTTTGCCCTCTTGT 59.029 47.619 0.00 0.00 0.00 3.16
190 191 2.250924 AGGATGGTTTTTGCCCTCTTG 58.749 47.619 0.00 0.00 0.00 3.02
191 192 2.702270 AGGATGGTTTTTGCCCTCTT 57.298 45.000 0.00 0.00 0.00 2.85
192 193 2.158325 TGAAGGATGGTTTTTGCCCTCT 60.158 45.455 0.00 0.00 0.00 3.69
193 194 2.247358 TGAAGGATGGTTTTTGCCCTC 58.753 47.619 0.00 0.00 0.00 4.30
194 195 2.368548 GTTGAAGGATGGTTTTTGCCCT 59.631 45.455 0.00 0.00 0.00 5.19
195 196 2.766313 GTTGAAGGATGGTTTTTGCCC 58.234 47.619 0.00 0.00 0.00 5.36
196 197 2.403259 CGTTGAAGGATGGTTTTTGCC 58.597 47.619 0.00 0.00 0.00 4.52
197 198 2.223947 ACCGTTGAAGGATGGTTTTTGC 60.224 45.455 0.00 0.00 35.37 3.68
198 199 3.726291 ACCGTTGAAGGATGGTTTTTG 57.274 42.857 0.00 0.00 35.37 2.44
199 200 3.739830 GCAACCGTTGAAGGATGGTTTTT 60.740 43.478 15.63 0.00 44.51 1.94
200 201 2.223947 GCAACCGTTGAAGGATGGTTTT 60.224 45.455 15.63 0.00 44.51 2.43
201 202 1.339929 GCAACCGTTGAAGGATGGTTT 59.660 47.619 15.63 0.00 44.51 3.27
203 204 0.893727 GGCAACCGTTGAAGGATGGT 60.894 55.000 15.63 0.00 40.64 3.55
204 205 1.883021 GGCAACCGTTGAAGGATGG 59.117 57.895 15.63 0.00 34.99 3.51
244 245 7.254966 GGTGTTTTTAAGATTGCCCGAATTTTT 60.255 33.333 0.00 0.00 0.00 1.94
245 246 6.203915 GGTGTTTTTAAGATTGCCCGAATTTT 59.796 34.615 0.00 0.00 0.00 1.82
246 247 5.699001 GGTGTTTTTAAGATTGCCCGAATTT 59.301 36.000 0.00 0.00 0.00 1.82
247 248 5.221541 TGGTGTTTTTAAGATTGCCCGAATT 60.222 36.000 0.00 0.00 0.00 2.17
248 249 4.282195 TGGTGTTTTTAAGATTGCCCGAAT 59.718 37.500 0.00 0.00 0.00 3.34
249 250 3.637229 TGGTGTTTTTAAGATTGCCCGAA 59.363 39.130 0.00 0.00 0.00 4.30
250 251 3.004944 GTGGTGTTTTTAAGATTGCCCGA 59.995 43.478 0.00 0.00 0.00 5.14
251 252 3.313690 GTGGTGTTTTTAAGATTGCCCG 58.686 45.455 0.00 0.00 0.00 6.13
252 253 3.243602 ACGTGGTGTTTTTAAGATTGCCC 60.244 43.478 0.00 0.00 0.00 5.36
253 254 3.972403 ACGTGGTGTTTTTAAGATTGCC 58.028 40.909 0.00 0.00 0.00 4.52
254 255 4.317769 GCAACGTGGTGTTTTTAAGATTGC 60.318 41.667 0.00 0.00 39.29 3.56
255 256 4.800993 TGCAACGTGGTGTTTTTAAGATTG 59.199 37.500 0.00 0.00 39.29 2.67
256 257 5.000012 TGCAACGTGGTGTTTTTAAGATT 58.000 34.783 0.00 0.00 39.29 2.40
257 258 4.640789 TGCAACGTGGTGTTTTTAAGAT 57.359 36.364 0.00 0.00 39.29 2.40
258 259 4.436242 TTGCAACGTGGTGTTTTTAAGA 57.564 36.364 0.00 0.00 39.29 2.10
259 260 5.517037 TTTTGCAACGTGGTGTTTTTAAG 57.483 34.783 0.00 0.00 39.29 1.85
260 261 5.917541 TTTTTGCAACGTGGTGTTTTTAA 57.082 30.435 0.00 0.00 39.29 1.52
261 262 6.588756 TGTATTTTTGCAACGTGGTGTTTTTA 59.411 30.769 0.00 0.00 39.29 1.52
262 263 5.408604 TGTATTTTTGCAACGTGGTGTTTTT 59.591 32.000 0.00 0.00 39.29 1.94
263 264 4.929808 TGTATTTTTGCAACGTGGTGTTTT 59.070 33.333 0.00 0.00 39.29 2.43
264 265 4.495422 TGTATTTTTGCAACGTGGTGTTT 58.505 34.783 0.00 0.00 39.29 2.83
265 266 4.111375 TGTATTTTTGCAACGTGGTGTT 57.889 36.364 0.00 0.00 43.09 3.32
266 267 3.784701 TGTATTTTTGCAACGTGGTGT 57.215 38.095 0.00 0.00 0.00 4.16
267 268 3.859961 TGTTGTATTTTTGCAACGTGGTG 59.140 39.130 0.00 0.00 45.54 4.17
268 269 3.860536 GTGTTGTATTTTTGCAACGTGGT 59.139 39.130 0.00 0.00 45.54 4.16
269 270 4.109050 AGTGTTGTATTTTTGCAACGTGG 58.891 39.130 0.00 0.00 45.54 4.94
270 271 5.287274 TGAAGTGTTGTATTTTTGCAACGTG 59.713 36.000 0.00 0.00 45.54 4.49
271 272 5.403246 TGAAGTGTTGTATTTTTGCAACGT 58.597 33.333 0.00 0.00 45.54 3.99
272 273 5.554324 GCTGAAGTGTTGTATTTTTGCAACG 60.554 40.000 0.00 0.00 45.54 4.10
273 274 5.519927 AGCTGAAGTGTTGTATTTTTGCAAC 59.480 36.000 0.00 0.00 43.60 4.17
274 275 5.519566 CAGCTGAAGTGTTGTATTTTTGCAA 59.480 36.000 8.42 0.00 0.00 4.08
275 276 5.042593 CAGCTGAAGTGTTGTATTTTTGCA 58.957 37.500 8.42 0.00 0.00 4.08
276 277 4.084900 GCAGCTGAAGTGTTGTATTTTTGC 60.085 41.667 20.43 0.00 0.00 3.68
277 278 5.174398 CAGCAGCTGAAGTGTTGTATTTTTG 59.826 40.000 20.43 0.00 32.44 2.44
278 279 5.284079 CAGCAGCTGAAGTGTTGTATTTTT 58.716 37.500 20.43 0.00 32.44 1.94
279 280 4.794003 GCAGCAGCTGAAGTGTTGTATTTT 60.794 41.667 27.39 0.00 37.91 1.82
280 281 3.304928 GCAGCAGCTGAAGTGTTGTATTT 60.305 43.478 27.39 0.00 37.91 1.40
281 282 2.227388 GCAGCAGCTGAAGTGTTGTATT 59.773 45.455 27.39 0.00 37.91 1.89
282 283 1.808945 GCAGCAGCTGAAGTGTTGTAT 59.191 47.619 27.39 0.00 37.91 2.29
283 284 1.229428 GCAGCAGCTGAAGTGTTGTA 58.771 50.000 27.39 0.00 37.91 2.41
284 285 1.450531 GGCAGCAGCTGAAGTGTTGT 61.451 55.000 27.39 0.00 41.70 3.32
285 286 1.285023 GGCAGCAGCTGAAGTGTTG 59.715 57.895 27.39 6.18 41.70 3.33
286 287 0.538977 ATGGCAGCAGCTGAAGTGTT 60.539 50.000 27.39 0.82 41.70 3.32
287 288 0.325933 TATGGCAGCAGCTGAAGTGT 59.674 50.000 27.39 8.79 41.70 3.55
288 289 1.456296 TTATGGCAGCAGCTGAAGTG 58.544 50.000 27.39 12.26 41.70 3.16
289 290 2.089980 CTTTATGGCAGCAGCTGAAGT 58.910 47.619 27.39 12.32 41.70 3.01
290 291 2.089980 ACTTTATGGCAGCAGCTGAAG 58.910 47.619 27.39 20.61 41.70 3.02
291 292 2.086869 GACTTTATGGCAGCAGCTGAA 58.913 47.619 27.39 13.56 41.70 3.02
292 293 1.003464 TGACTTTATGGCAGCAGCTGA 59.997 47.619 27.39 6.41 41.70 4.26
293 294 1.131883 GTGACTTTATGGCAGCAGCTG 59.868 52.381 18.93 18.93 41.70 4.24
294 295 1.004044 AGTGACTTTATGGCAGCAGCT 59.996 47.619 0.00 0.00 41.70 4.24
295 296 1.399791 GAGTGACTTTATGGCAGCAGC 59.600 52.381 0.00 0.00 31.98 5.25
296 297 1.662629 CGAGTGACTTTATGGCAGCAG 59.337 52.381 0.00 0.00 31.98 4.24
297 298 1.675714 CCGAGTGACTTTATGGCAGCA 60.676 52.381 0.00 0.00 31.98 4.41
298 299 1.009829 CCGAGTGACTTTATGGCAGC 58.990 55.000 0.00 0.00 31.98 5.25
299 300 1.009829 GCCGAGTGACTTTATGGCAG 58.990 55.000 12.24 0.00 42.03 4.85
300 301 0.613260 AGCCGAGTGACTTTATGGCA 59.387 50.000 17.22 0.00 44.83 4.92
301 302 1.291132 GAGCCGAGTGACTTTATGGC 58.709 55.000 9.98 9.98 42.76 4.40
302 303 1.207089 TGGAGCCGAGTGACTTTATGG 59.793 52.381 0.00 0.00 0.00 2.74
303 304 2.672961 TGGAGCCGAGTGACTTTATG 57.327 50.000 0.00 0.00 0.00 1.90
304 305 2.678190 GCTTGGAGCCGAGTGACTTTAT 60.678 50.000 5.69 0.00 34.48 1.40
305 306 1.337823 GCTTGGAGCCGAGTGACTTTA 60.338 52.381 5.69 0.00 34.48 1.85
306 307 0.603975 GCTTGGAGCCGAGTGACTTT 60.604 55.000 5.69 0.00 34.48 2.66
307 308 1.004440 GCTTGGAGCCGAGTGACTT 60.004 57.895 5.69 0.00 34.48 3.01
308 309 2.164865 CTGCTTGGAGCCGAGTGACT 62.165 60.000 5.69 0.00 41.51 3.41
309 310 1.739562 CTGCTTGGAGCCGAGTGAC 60.740 63.158 5.69 0.00 41.51 3.67
310 311 1.908299 TCTGCTTGGAGCCGAGTGA 60.908 57.895 5.69 2.43 41.51 3.41
311 312 1.739562 GTCTGCTTGGAGCCGAGTG 60.740 63.158 5.69 0.26 41.51 3.51
312 313 2.659610 GTCTGCTTGGAGCCGAGT 59.340 61.111 5.69 0.00 41.51 4.18
313 314 2.507992 CGTCTGCTTGGAGCCGAG 60.508 66.667 0.00 0.00 41.51 4.63
314 315 4.742201 GCGTCTGCTTGGAGCCGA 62.742 66.667 0.00 0.00 41.51 5.54
318 319 4.379243 ACGGGCGTCTGCTTGGAG 62.379 66.667 0.00 0.00 42.25 3.86
319 320 4.680237 CACGGGCGTCTGCTTGGA 62.680 66.667 0.00 0.00 42.25 3.53
331 332 3.273834 AAAACGGTCACGCACGGG 61.274 61.111 0.00 0.00 46.04 5.28
332 333 2.052590 CAAAACGGTCACGCACGG 60.053 61.111 0.00 0.00 46.04 4.94
333 334 1.083657 CTCAAAACGGTCACGCACG 60.084 57.895 0.00 0.00 46.04 5.34
334 335 0.375803 AACTCAAAACGGTCACGCAC 59.624 50.000 0.00 0.00 46.04 5.34
335 336 0.653636 GAACTCAAAACGGTCACGCA 59.346 50.000 0.00 0.00 46.04 5.24
336 337 0.653636 TGAACTCAAAACGGTCACGC 59.346 50.000 0.00 0.00 46.04 5.34
338 339 1.593793 GCGTGAACTCAAAACGGTCAC 60.594 52.381 0.00 0.00 37.77 3.67
339 340 0.653636 GCGTGAACTCAAAACGGTCA 59.346 50.000 0.00 0.00 37.77 4.02
340 341 0.041576 GGCGTGAACTCAAAACGGTC 60.042 55.000 0.00 0.00 37.77 4.79
341 342 1.441732 GGGCGTGAACTCAAAACGGT 61.442 55.000 0.00 0.00 37.77 4.83
342 343 1.281656 GGGCGTGAACTCAAAACGG 59.718 57.895 0.00 0.00 37.77 4.44
343 344 1.083015 CGGGCGTGAACTCAAAACG 60.083 57.895 0.00 0.00 40.22 3.60
344 345 0.041576 GTCGGGCGTGAACTCAAAAC 60.042 55.000 0.00 0.00 0.00 2.43
345 346 1.161563 GGTCGGGCGTGAACTCAAAA 61.162 55.000 0.00 0.00 0.00 2.44
346 347 1.595929 GGTCGGGCGTGAACTCAAA 60.596 57.895 0.00 0.00 0.00 2.69
347 348 2.029964 GGTCGGGCGTGAACTCAA 59.970 61.111 0.00 0.00 0.00 3.02
348 349 2.313051 TTTGGTCGGGCGTGAACTCA 62.313 55.000 0.00 0.00 0.00 3.41
349 350 1.161563 TTTTGGTCGGGCGTGAACTC 61.162 55.000 0.00 0.00 0.00 3.01
350 351 0.748729 TTTTTGGTCGGGCGTGAACT 60.749 50.000 0.00 0.00 0.00 3.01
351 352 0.593008 GTTTTTGGTCGGGCGTGAAC 60.593 55.000 0.00 0.00 0.00 3.18
352 353 1.726533 GGTTTTTGGTCGGGCGTGAA 61.727 55.000 0.00 0.00 0.00 3.18
353 354 2.188161 GGTTTTTGGTCGGGCGTGA 61.188 57.895 0.00 0.00 0.00 4.35
354 355 2.333581 GGTTTTTGGTCGGGCGTG 59.666 61.111 0.00 0.00 0.00 5.34
355 356 2.908428 GGGTTTTTGGTCGGGCGT 60.908 61.111 0.00 0.00 0.00 5.68
356 357 2.596338 AGGGTTTTTGGTCGGGCG 60.596 61.111 0.00 0.00 0.00 6.13
357 358 1.524008 CTGAGGGTTTTTGGTCGGGC 61.524 60.000 0.00 0.00 0.00 6.13
358 359 0.109723 TCTGAGGGTTTTTGGTCGGG 59.890 55.000 0.00 0.00 0.00 5.14
359 360 2.084546 GATCTGAGGGTTTTTGGTCGG 58.915 52.381 0.00 0.00 0.00 4.79
360 361 2.744202 CAGATCTGAGGGTTTTTGGTCG 59.256 50.000 18.34 0.00 0.00 4.79
361 362 3.084786 CCAGATCTGAGGGTTTTTGGTC 58.915 50.000 24.62 0.00 0.00 4.02
362 363 2.716424 TCCAGATCTGAGGGTTTTTGGT 59.284 45.455 24.62 0.00 0.00 3.67
363 364 3.439857 TCCAGATCTGAGGGTTTTTGG 57.560 47.619 24.62 4.09 0.00 3.28
364 365 4.400567 GGATTCCAGATCTGAGGGTTTTTG 59.599 45.833 24.62 3.94 0.00 2.44
365 366 4.044571 TGGATTCCAGATCTGAGGGTTTTT 59.955 41.667 24.62 0.00 0.00 1.94
366 367 3.593328 TGGATTCCAGATCTGAGGGTTTT 59.407 43.478 24.62 1.45 0.00 2.43
367 368 3.054065 GTGGATTCCAGATCTGAGGGTTT 60.054 47.826 24.62 2.51 32.34 3.27
368 369 2.507471 GTGGATTCCAGATCTGAGGGTT 59.493 50.000 24.62 3.94 32.34 4.11
369 370 2.122768 GTGGATTCCAGATCTGAGGGT 58.877 52.381 24.62 6.92 32.34 4.34
370 371 1.419387 GGTGGATTCCAGATCTGAGGG 59.581 57.143 24.62 7.81 32.34 4.30
371 372 2.121948 TGGTGGATTCCAGATCTGAGG 58.878 52.381 24.62 8.61 32.34 3.86
372 373 2.158842 GGTGGTGGATTCCAGATCTGAG 60.159 54.545 24.62 13.85 38.23 3.35
373 374 1.839994 GGTGGTGGATTCCAGATCTGA 59.160 52.381 24.62 5.34 38.23 3.27
374 375 1.473965 CGGTGGTGGATTCCAGATCTG 60.474 57.143 16.24 16.24 38.23 2.90
375 376 0.833287 CGGTGGTGGATTCCAGATCT 59.167 55.000 5.39 0.00 38.23 2.75
376 377 0.541863 ACGGTGGTGGATTCCAGATC 59.458 55.000 5.39 0.00 38.23 2.75
377 378 0.541863 GACGGTGGTGGATTCCAGAT 59.458 55.000 5.39 0.00 38.23 2.90
378 379 1.884075 CGACGGTGGTGGATTCCAGA 61.884 60.000 5.39 0.00 38.23 3.86
379 380 1.447838 CGACGGTGGTGGATTCCAG 60.448 63.158 5.39 0.00 38.23 3.86
380 381 1.261938 ATCGACGGTGGTGGATTCCA 61.262 55.000 0.00 0.00 38.28 3.53
381 382 0.529992 GATCGACGGTGGTGGATTCC 60.530 60.000 0.00 0.00 41.05 3.01
382 383 0.529992 GGATCGACGGTGGTGGATTC 60.530 60.000 0.00 0.00 41.05 2.52
383 384 1.520666 GGATCGACGGTGGTGGATT 59.479 57.895 0.00 0.00 41.05 3.01
384 385 2.782222 CGGATCGACGGTGGTGGAT 61.782 63.158 0.00 0.00 43.28 3.41
385 386 3.445687 CGGATCGACGGTGGTGGA 61.446 66.667 0.00 0.00 35.28 4.02
394 395 2.252855 CTCTAGCGGCGGATCGAC 59.747 66.667 9.78 0.00 0.00 4.20
395 396 2.978565 CCTCTAGCGGCGGATCGA 60.979 66.667 9.78 0.00 0.00 3.59
396 397 4.708968 GCCTCTAGCGGCGGATCG 62.709 72.222 8.23 0.00 40.79 3.69
432 433 3.826926 GATGGAATCGGGGGCGGAC 62.827 68.421 0.00 0.00 31.13 4.79
433 434 3.556306 GATGGAATCGGGGGCGGA 61.556 66.667 0.00 0.00 31.13 5.54
434 435 4.643387 GGATGGAATCGGGGGCGG 62.643 72.222 0.00 0.00 46.86 6.13
473 474 4.176752 GAAGGCTAGGCGGGGTGG 62.177 72.222 11.10 0.00 0.00 4.61
476 477 4.176752 GGTGAAGGCTAGGCGGGG 62.177 72.222 11.10 0.00 0.00 5.73
482 483 4.142093 CCAAATTGGAATGGTGAAGGCTAG 60.142 45.833 6.04 0.00 40.96 3.42
483 484 3.768757 CCAAATTGGAATGGTGAAGGCTA 59.231 43.478 6.04 0.00 40.96 3.93
494 495 1.510844 GCGGACGCCAAATTGGAAT 59.489 52.632 17.47 1.69 40.96 3.01
495 496 2.958576 GCGGACGCCAAATTGGAA 59.041 55.556 17.47 0.00 40.96 3.53
542 553 1.819632 CCATTACTGGCGGTGGAGC 60.820 63.158 9.79 0.00 35.23 4.70
553 564 0.466922 GAGCTGCCATGGCCATTACT 60.467 55.000 33.44 21.72 41.09 2.24
568 579 1.617322 TGTAGAGACACAACCGAGCT 58.383 50.000 0.00 0.00 0.00 4.09
582 593 0.033796 CCCCTAGGACACCGTGTAGA 60.034 60.000 11.48 0.00 33.47 2.59
586 597 3.782443 GGCCCCTAGGACACCGTG 61.782 72.222 11.48 0.00 43.07 4.94
743 766 1.517361 CTAGCGCACCTCACCATCA 59.483 57.895 11.47 0.00 0.00 3.07
812 839 2.820059 TTGTGCGACTCTCACAATCT 57.180 45.000 9.99 0.00 45.99 2.40
876 905 7.922811 GCCATTTATTATTTCCCTTGTCTCAAG 59.077 37.037 2.90 2.90 0.00 3.02
886 915 7.962441 ACAGTAATGGCCATTTATTATTTCCC 58.038 34.615 34.85 5.91 32.50 3.97
889 918 9.612066 CCAAACAGTAATGGCCATTTATTATTT 57.388 29.630 34.85 23.38 32.50 1.40
1018 3046 3.842007 TTGTAGTCCGAGAAACCCAAA 57.158 42.857 0.00 0.00 0.00 3.28
1165 3193 4.862823 GACGGAGAGGGGAGGGGG 62.863 77.778 0.00 0.00 0.00 5.40
1201 3229 2.123425 CGAAGGGGGATCGGAGGA 60.123 66.667 0.00 0.00 36.68 3.71
1319 3347 0.107017 CCCGATGGCATCCAGAGTTT 60.107 55.000 21.20 0.00 36.75 2.66
1606 3635 9.606631 GGAATACTCATTTCTACTTCAAGATGT 57.393 33.333 0.00 0.00 0.00 3.06
1645 3674 0.264657 TCTAGCCCCTCTATGCACCA 59.735 55.000 0.00 0.00 0.00 4.17
1762 3793 3.188460 CCATGAGTGTAACGGGAAAACAG 59.812 47.826 0.00 0.00 45.86 3.16
1913 3950 2.747460 GGCATGGCAGTCTCGCAA 60.747 61.111 15.47 0.00 0.00 4.85
1977 4014 2.756840 TCATTCAGGAGCACACAGAG 57.243 50.000 0.00 0.00 0.00 3.35
2100 4148 5.374921 CATCTGGCTGATTAACCTCAGAAT 58.625 41.667 9.76 0.00 44.48 2.40
2215 4263 6.831976 AGGAAGCAATAGTGTAAGGAATAGG 58.168 40.000 0.00 0.00 0.00 2.57
2526 4588 2.918712 AATGGAGCCAGATAGGAACG 57.081 50.000 0.00 0.00 41.22 3.95
2539 4601 8.831715 ACTAAAGCAAATTGGTTTTAATGGAG 57.168 30.769 25.01 17.70 44.59 3.86
2854 4966 4.217550 TGTTTTAGCAAGGCACTATGGTTC 59.782 41.667 0.00 0.00 38.49 3.62
2913 5047 2.747460 TGCCGGTGCAATCTCAGC 60.747 61.111 1.90 0.00 46.66 4.26
2933 5067 5.011943 AGTCTCCTGCATTATGAGATTCTCC 59.988 44.000 11.12 0.00 37.47 3.71
3060 5198 3.259123 AGGAAGCAAAGCCAAATGGTAAG 59.741 43.478 0.71 0.00 37.57 2.34
3276 5417 1.734465 GTTCTGATTCTGGTCTTGCCG 59.266 52.381 0.00 0.00 41.21 5.69
3596 5750 4.451096 CGGGGTTGTGATGCTGTATATTAC 59.549 45.833 0.00 0.00 0.00 1.89
3709 5867 6.668541 TGATTTTTCTCTTCATCGGATCAC 57.331 37.500 0.00 0.00 0.00 3.06
3789 5947 4.545823 TGTGAACTGTGACGATTTTTCC 57.454 40.909 0.00 0.00 0.00 3.13
3858 6016 9.214957 TCAACAATCTTCATACACGAGTTTATT 57.785 29.630 0.00 0.00 0.00 1.40
3934 6092 2.225267 GGGGTCATCCTCCTTTTCCAAA 60.225 50.000 0.00 0.00 35.33 3.28
4072 6233 1.366111 GCTATTTTCGCCGGCTGTGA 61.366 55.000 26.68 12.15 0.00 3.58
4134 6298 5.506317 GGTTATCTTCAAGCGATTTGGATGG 60.506 44.000 0.00 0.00 37.39 3.51
4146 6310 3.195661 GGTAGCACGGGTTATCTTCAAG 58.804 50.000 0.00 0.00 0.00 3.02
4257 6421 1.472728 CGCCAACTCCGCCTTAACTAT 60.473 52.381 0.00 0.00 0.00 2.12
4358 6525 6.151648 GGCCTAGTTCTTTTTATAAACGGGTT 59.848 38.462 0.00 0.00 0.00 4.11
4371 6538 4.141801 GGTTGGTTTTTGGCCTAGTTCTTT 60.142 41.667 3.32 0.00 0.00 2.52
4374 6541 2.696187 TGGTTGGTTTTTGGCCTAGTTC 59.304 45.455 3.32 0.00 0.00 3.01
4401 6571 0.173708 TTTTGTTGGCCACGGTGTTC 59.826 50.000 3.88 0.00 0.00 3.18
4403 6573 0.108567 GTTTTTGTTGGCCACGGTGT 60.109 50.000 3.88 0.00 0.00 4.16
4409 6579 1.134848 GTGCTCTGTTTTTGTTGGCCA 60.135 47.619 0.00 0.00 0.00 5.36
4447 6618 2.004583 CTTACAATCGTTCCGGCTCA 57.995 50.000 0.00 0.00 0.00 4.26
4484 6655 5.463392 GGTTGTCATTTTTCCTTCTTGAAGC 59.537 40.000 4.94 0.00 0.00 3.86
4505 6676 3.310860 GATGGCGGTGTCCTCGGTT 62.311 63.158 0.00 0.00 0.00 4.44
4544 6917 4.706962 GGTCTGGGTGAAAGCTTATTGATT 59.293 41.667 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.