Multiple sequence alignment - TraesCS4D01G273600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G273600 chr4D 100.000 4253 0 0 1 4253 443518171 443522423 0.000000e+00 7854.0
1 TraesCS4D01G273600 chr4D 85.039 127 15 4 2862 2986 464156696 464156820 4.460000e-25 126.0
2 TraesCS4D01G273600 chr4B 88.978 2241 126 44 46 2239 552843335 552845501 0.000000e+00 2658.0
3 TraesCS4D01G273600 chr4B 95.141 1276 57 4 2236 3507 552845552 552846826 0.000000e+00 2008.0
4 TraesCS4D01G273600 chr4B 84.921 126 15 4 2862 2985 579733583 579733706 1.610000e-24 124.0
5 TraesCS4D01G273600 chr4A 91.310 1542 89 20 642 2170 24218915 24217406 0.000000e+00 2063.0
6 TraesCS4D01G273600 chr4A 94.388 891 36 4 2610 3486 24217065 24216175 0.000000e+00 1356.0
7 TraesCS4D01G273600 chr4A 90.364 550 26 12 1 546 24219938 24219412 0.000000e+00 697.0
8 TraesCS4D01G273600 chr4A 94.461 343 19 0 2228 2570 24217406 24217064 2.910000e-146 529.0
9 TraesCS4D01G273600 chr4A 89.571 326 33 1 2251 2576 102625689 102626013 3.060000e-111 412.0
10 TraesCS4D01G273600 chr5D 84.824 626 79 4 2235 2857 517413648 517413036 2.170000e-172 616.0
11 TraesCS4D01G273600 chr5D 83.247 388 41 17 1869 2239 517415594 517415214 6.810000e-88 335.0
12 TraesCS4D01G273600 chr5D 92.708 96 5 1 1771 1864 517415854 517415759 2.060000e-28 137.0
13 TraesCS4D01G273600 chr7A 81.260 635 73 12 2236 2864 111959788 111959194 4.980000e-129 472.0
14 TraesCS4D01G273600 chr2D 81.302 599 86 18 3576 4156 30739283 30739873 3.000000e-126 462.0
15 TraesCS4D01G273600 chr2D 89.571 326 33 1 2251 2576 557134386 557134062 3.060000e-111 412.0
16 TraesCS4D01G273600 chr2D 89.264 326 34 1 2251 2576 608571218 608570894 1.420000e-109 407.0
17 TraesCS4D01G273600 chr2D 78.871 620 83 28 3579 4156 558730900 558730287 4.010000e-100 375.0
18 TraesCS4D01G273600 chr2D 89.231 65 7 0 2881 2945 468131499 468131563 9.800000e-12 82.4
19 TraesCS4D01G273600 chr2D 91.071 56 5 0 2870 2925 38095021 38095076 4.560000e-10 76.8
20 TraesCS4D01G273600 chr1D 81.905 525 77 14 2655 3168 171162740 171162223 1.090000e-115 427.0
21 TraesCS4D01G273600 chr5B 79.100 622 99 23 3652 4253 4554390 4553780 2.380000e-107 399.0
22 TraesCS4D01G273600 chr5B 100.000 29 0 0 3504 3532 657711488 657711516 2.000000e-03 54.7
23 TraesCS4D01G273600 chr3B 82.041 490 66 13 3579 4053 817310129 817310611 8.570000e-107 398.0
24 TraesCS4D01G273600 chr3B 81.643 414 57 14 3574 3973 258169501 258169909 4.100000e-85 326.0
25 TraesCS4D01G273600 chr1A 79.123 570 97 15 3579 4138 353664708 353664151 1.440000e-99 374.0
26 TraesCS4D01G273600 chr1A 100.000 28 0 0 3511 3538 533221297 533221324 8.000000e-03 52.8
27 TraesCS4D01G273600 chr1B 87.987 308 33 4 2863 3168 226357576 226357271 1.120000e-95 361.0
28 TraesCS4D01G273600 chr7D 86.503 326 40 2 2251 2576 1224828 1225149 5.230000e-94 355.0
29 TraesCS4D01G273600 chr2B 77.795 635 91 35 3579 4189 786239908 786239300 3.150000e-91 346.0
30 TraesCS4D01G273600 chr2B 93.056 144 10 0 2251 2394 643297835 643297978 1.200000e-50 211.0
31 TraesCS4D01G273600 chr2B 92.727 55 4 0 2722 2776 25673686 25673632 3.530000e-11 80.5
32 TraesCS4D01G273600 chr2B 91.228 57 5 0 2873 2929 3292169 3292225 1.270000e-10 78.7
33 TraesCS4D01G273600 chr6A 81.095 402 53 16 3580 3967 608316074 608315682 2.490000e-77 300.0
34 TraesCS4D01G273600 chr2A 78.719 484 67 20 3576 4028 381493643 381494121 1.500000e-74 291.0
35 TraesCS4D01G273600 chr2A 90.909 44 3 1 3498 3541 650204564 650204522 1.650000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G273600 chr4D 443518171 443522423 4252 False 7854.000000 7854 100.000000 1 4253 1 chr4D.!!$F1 4252
1 TraesCS4D01G273600 chr4B 552843335 552846826 3491 False 2333.000000 2658 92.059500 46 3507 2 chr4B.!!$F2 3461
2 TraesCS4D01G273600 chr4A 24216175 24219938 3763 True 1161.250000 2063 92.630750 1 3486 4 chr4A.!!$R1 3485
3 TraesCS4D01G273600 chr5D 517413036 517415854 2818 True 362.666667 616 86.926333 1771 2857 3 chr5D.!!$R1 1086
4 TraesCS4D01G273600 chr7A 111959194 111959788 594 True 472.000000 472 81.260000 2236 2864 1 chr7A.!!$R1 628
5 TraesCS4D01G273600 chr2D 30739283 30739873 590 False 462.000000 462 81.302000 3576 4156 1 chr2D.!!$F1 580
6 TraesCS4D01G273600 chr2D 558730287 558730900 613 True 375.000000 375 78.871000 3579 4156 1 chr2D.!!$R2 577
7 TraesCS4D01G273600 chr1D 171162223 171162740 517 True 427.000000 427 81.905000 2655 3168 1 chr1D.!!$R1 513
8 TraesCS4D01G273600 chr5B 4553780 4554390 610 True 399.000000 399 79.100000 3652 4253 1 chr5B.!!$R1 601
9 TraesCS4D01G273600 chr1A 353664151 353664708 557 True 374.000000 374 79.123000 3579 4138 1 chr1A.!!$R1 559
10 TraesCS4D01G273600 chr2B 786239300 786239908 608 True 346.000000 346 77.795000 3579 4189 1 chr2B.!!$R2 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
569 583 0.109532 TCGCTCCATTTTCCACCACA 59.890 50.0 0.0 0.0 0.0 4.17 F
1510 1974 0.597568 CAAAATTGCAGAGCCCGTCA 59.402 50.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1516 1980 0.745468 GGCTATCGTCCTTCTCGGTT 59.255 55.0 0.0 0.0 0.0 4.44 R
3440 5708 0.817634 TAGGCCCATTTTGATCCGCG 60.818 55.0 0.0 0.0 0.0 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.938140 TTGTTTGACCTTATAAAGATGAGGG 57.062 36.000 1.37 0.00 42.07 4.30
28 29 7.393234 TGTTTGACCTTATAAAGATGAGGGTTG 59.607 37.037 1.37 0.00 42.07 3.77
58 60 4.712476 AGAAGATATGTCAGTTGGATGCC 58.288 43.478 0.00 0.00 0.00 4.40
89 91 1.488705 CCTGCCACTGGTCCAGGTAA 61.489 60.000 23.06 4.90 40.92 2.85
90 92 0.620556 CTGCCACTGGTCCAGGTAAT 59.379 55.000 23.06 0.00 35.51 1.89
91 93 1.837439 CTGCCACTGGTCCAGGTAATA 59.163 52.381 23.06 4.62 35.51 0.98
92 94 2.439507 CTGCCACTGGTCCAGGTAATAT 59.560 50.000 23.06 0.00 35.51 1.28
93 95 2.438021 TGCCACTGGTCCAGGTAATATC 59.562 50.000 23.06 5.42 35.51 1.63
94 96 2.224548 GCCACTGGTCCAGGTAATATCC 60.225 54.545 23.06 0.00 35.51 2.59
95 97 2.037251 CCACTGGTCCAGGTAATATCCG 59.963 54.545 23.06 0.00 35.51 4.18
96 98 2.963101 CACTGGTCCAGGTAATATCCGA 59.037 50.000 23.06 0.00 35.51 4.55
97 99 3.578716 CACTGGTCCAGGTAATATCCGAT 59.421 47.826 23.06 0.00 35.51 4.18
103 105 5.302313 GGTCCAGGTAATATCCGATATCTCC 59.698 48.000 1.25 7.33 0.00 3.71
105 107 5.195960 TCCAGGTAATATCCGATATCTCCCT 59.804 44.000 13.66 10.59 0.00 4.20
113 115 3.526899 TCCGATATCTCCCTCTCTCTCT 58.473 50.000 0.34 0.00 0.00 3.10
159 161 3.068881 CTTCCGAAGCTCCCACCA 58.931 61.111 0.00 0.00 0.00 4.17
277 283 2.063015 ATCACGGTGGAAAGGTGGCA 62.063 55.000 8.50 0.00 32.65 4.92
339 353 1.001393 AAACCCGCCATCATTCCGT 60.001 52.632 0.00 0.00 0.00 4.69
340 354 1.029947 AAACCCGCCATCATTCCGTC 61.030 55.000 0.00 0.00 0.00 4.79
488 502 2.621055 ACAGACAGACAGACAGACAGAC 59.379 50.000 0.00 0.00 0.00 3.51
489 503 2.620585 CAGACAGACAGACAGACAGACA 59.379 50.000 0.00 0.00 0.00 3.41
490 504 2.884012 AGACAGACAGACAGACAGACAG 59.116 50.000 0.00 0.00 0.00 3.51
491 505 2.881513 GACAGACAGACAGACAGACAGA 59.118 50.000 0.00 0.00 0.00 3.41
492 506 2.884012 ACAGACAGACAGACAGACAGAG 59.116 50.000 0.00 0.00 0.00 3.35
493 507 2.228582 CAGACAGACAGACAGACAGAGG 59.771 54.545 0.00 0.00 0.00 3.69
494 508 2.107378 AGACAGACAGACAGACAGAGGA 59.893 50.000 0.00 0.00 0.00 3.71
495 509 2.887783 GACAGACAGACAGACAGAGGAA 59.112 50.000 0.00 0.00 0.00 3.36
557 571 3.531207 CTCCGCCTCATCGCTCCA 61.531 66.667 0.00 0.00 0.00 3.86
561 575 1.097547 CCGCCTCATCGCTCCATTTT 61.098 55.000 0.00 0.00 0.00 1.82
569 583 0.109532 TCGCTCCATTTTCCACCACA 59.890 50.000 0.00 0.00 0.00 4.17
665 1113 2.883316 AAATCCAGGGGAGGGGAGGG 62.883 65.000 0.00 0.00 36.45 4.30
672 1120 1.006227 GGGAGGGGAGGGGAAATCT 59.994 63.158 0.00 0.00 0.00 2.40
673 1121 0.627768 GGGAGGGGAGGGGAAATCTT 60.628 60.000 0.00 0.00 0.00 2.40
695 1143 4.237843 TCCATGCCCTTCTTAGATGAGAT 58.762 43.478 0.00 0.00 0.00 2.75
773 1222 9.209175 TGCTCAGTAGTATCTTTCTTCTTTTTC 57.791 33.333 0.00 0.00 0.00 2.29
774 1223 8.661257 GCTCAGTAGTATCTTTCTTCTTTTTCC 58.339 37.037 0.00 0.00 0.00 3.13
809 1258 6.510746 TGAAACGTGCGATAAATAGAGATG 57.489 37.500 0.00 0.00 0.00 2.90
847 1296 0.912006 GGCCTTCCTCTGAGGTTCCT 60.912 60.000 22.50 0.00 36.53 3.36
930 1382 2.157738 CTGGCCTGGTTTCAGAAGAAG 58.842 52.381 3.32 0.00 43.49 2.85
968 1420 3.458044 TGGTGAGACATAGTGAGAGGT 57.542 47.619 0.00 0.00 0.00 3.85
1083 1536 9.036980 ACAAAGTCAGGTACTACTCATATTCTT 57.963 33.333 0.00 0.00 37.50 2.52
1108 1561 4.385199 CCTTCCTGGTATGGCTTATGTGAA 60.385 45.833 0.00 0.00 0.00 3.18
1109 1562 4.853468 TCCTGGTATGGCTTATGTGAAA 57.147 40.909 0.00 0.00 0.00 2.69
1161 1614 2.595750 TTGATCCCCCGATGTTGTTT 57.404 45.000 0.00 0.00 0.00 2.83
1246 1699 9.090692 CGAGCAATTAATTCTCAATCCAAAAAT 57.909 29.630 19.04 0.00 0.00 1.82
1269 1722 4.660789 GCATACCTTCATGCTCCAATTT 57.339 40.909 0.92 0.00 46.35 1.82
1270 1723 4.614946 GCATACCTTCATGCTCCAATTTC 58.385 43.478 0.92 0.00 46.35 2.17
1271 1724 4.500375 GCATACCTTCATGCTCCAATTTCC 60.500 45.833 0.92 0.00 46.35 3.13
1272 1725 3.173953 ACCTTCATGCTCCAATTTCCA 57.826 42.857 0.00 0.00 0.00 3.53
1273 1726 3.509442 ACCTTCATGCTCCAATTTCCAA 58.491 40.909 0.00 0.00 0.00 3.53
1274 1727 4.098894 ACCTTCATGCTCCAATTTCCAAT 58.901 39.130 0.00 0.00 0.00 3.16
1275 1728 5.271598 ACCTTCATGCTCCAATTTCCAATA 58.728 37.500 0.00 0.00 0.00 1.90
1276 1729 5.127682 ACCTTCATGCTCCAATTTCCAATAC 59.872 40.000 0.00 0.00 0.00 1.89
1277 1730 5.361857 CCTTCATGCTCCAATTTCCAATACT 59.638 40.000 0.00 0.00 0.00 2.12
1278 1731 6.547141 CCTTCATGCTCCAATTTCCAATACTA 59.453 38.462 0.00 0.00 0.00 1.82
1279 1732 7.068593 CCTTCATGCTCCAATTTCCAATACTAA 59.931 37.037 0.00 0.00 0.00 2.24
1302 1757 2.232452 AGGTTTCAGTCTGATCCACTCG 59.768 50.000 19.90 0.00 0.00 4.18
1308 1763 3.956848 TCAGTCTGATCCACTCGATTCAT 59.043 43.478 0.00 0.00 0.00 2.57
1343 1800 8.558973 TTCAACTTGTTTTCATTCAACCAAAT 57.441 26.923 0.00 0.00 0.00 2.32
1352 1809 9.643693 GTTTTCATTCAACCAAATCAGTGATAT 57.356 29.630 5.94 0.00 0.00 1.63
1372 1829 7.010923 GTGATATTGAACTTCAGTGATCTGTCC 59.989 40.741 0.00 0.00 41.91 4.02
1375 1832 5.034852 TGAACTTCAGTGATCTGTCCAAA 57.965 39.130 0.00 0.00 41.91 3.28
1376 1833 5.059161 TGAACTTCAGTGATCTGTCCAAAG 58.941 41.667 0.00 0.00 41.91 2.77
1377 1834 4.696479 ACTTCAGTGATCTGTCCAAAGT 57.304 40.909 0.00 0.00 41.91 2.66
1378 1835 5.808366 ACTTCAGTGATCTGTCCAAAGTA 57.192 39.130 0.00 0.00 41.91 2.24
1379 1836 6.365970 ACTTCAGTGATCTGTCCAAAGTAT 57.634 37.500 0.00 0.00 41.91 2.12
1380 1837 6.773638 ACTTCAGTGATCTGTCCAAAGTATT 58.226 36.000 0.00 0.00 41.91 1.89
1381 1838 6.876257 ACTTCAGTGATCTGTCCAAAGTATTC 59.124 38.462 0.00 0.00 41.91 1.75
1382 1839 6.611613 TCAGTGATCTGTCCAAAGTATTCT 57.388 37.500 0.00 0.00 41.91 2.40
1386 1843 7.064371 CAGTGATCTGTCCAAAGTATTCTGAAG 59.936 40.741 0.00 0.00 36.97 3.02
1406 1863 4.311816 AGTCTGAACCATTTGCAAGTTG 57.688 40.909 7.23 5.98 0.00 3.16
1407 1864 3.701040 AGTCTGAACCATTTGCAAGTTGT 59.299 39.130 7.23 0.07 0.00 3.32
1409 1866 4.504097 GTCTGAACCATTTGCAAGTTGTTC 59.496 41.667 23.72 23.72 34.25 3.18
1422 1879 5.818136 CAAGTTGTTCTTGGAACTTCTGA 57.182 39.130 10.98 0.00 46.85 3.27
1427 1884 7.484140 AGTTGTTCTTGGAACTTCTGAATTTC 58.516 34.615 10.92 10.92 0.00 2.17
1431 1894 5.072741 TCTTGGAACTTCTGAATTTCCCAG 58.927 41.667 26.92 25.16 38.93 4.45
1435 1898 4.827284 GGAACTTCTGAATTTCCCAGTTGA 59.173 41.667 22.27 0.00 34.98 3.18
1448 1912 4.728772 TCCCAGTTGAAATCTTGTGACAT 58.271 39.130 0.00 0.00 0.00 3.06
1449 1913 5.875224 TCCCAGTTGAAATCTTGTGACATA 58.125 37.500 0.00 0.00 0.00 2.29
1450 1914 5.705441 TCCCAGTTGAAATCTTGTGACATAC 59.295 40.000 0.00 0.00 0.00 2.39
1510 1974 0.597568 CAAAATTGCAGAGCCCGTCA 59.402 50.000 0.00 0.00 0.00 4.35
1516 1980 2.049185 GCAGAGCCCGTCAGAGAGA 61.049 63.158 0.00 0.00 0.00 3.10
1540 2004 1.410882 GAGAAGGACGATAGCCTGCTT 59.589 52.381 0.00 0.00 44.88 3.91
1594 2058 0.460311 ACGATTCGGCTCGGAAGAAT 59.540 50.000 11.29 3.65 42.88 2.40
1630 2094 0.805614 CGTTCGAGGAGCTCAAGAGA 59.194 55.000 17.19 6.20 0.00 3.10
1657 2121 2.022718 AGAACTTCAGGCAGGACTCT 57.977 50.000 0.00 0.00 0.00 3.24
1682 2146 4.299796 GGGGAGGTGGCTTTGGCA 62.300 66.667 0.00 0.00 40.87 4.92
1720 2184 1.590238 GTCACCAATGATCTTCGCGAG 59.410 52.381 9.59 3.89 37.14 5.03
1727 2191 0.744874 TGATCTTCGCGAGGGGTTAG 59.255 55.000 18.80 7.68 0.00 2.34
1729 2193 1.327690 ATCTTCGCGAGGGGTTAGCA 61.328 55.000 18.80 0.00 0.00 3.49
2171 2826 7.990314 ACCAAATTTGTTAACTGCCTAAAATGT 59.010 29.630 16.73 0.00 0.00 2.71
2177 2832 5.925397 TGTTAACTGCCTAAAATGTGCAATG 59.075 36.000 7.22 0.00 34.06 2.82
2180 2835 5.212532 ACTGCCTAAAATGTGCAATGAAA 57.787 34.783 0.00 0.00 34.06 2.69
2207 2862 5.879237 TGCAATTTCGATGTATTTCCTCAC 58.121 37.500 0.00 0.00 0.00 3.51
2349 4574 2.350804 CACCAGAATGAAGATCGCACTG 59.649 50.000 0.00 0.00 39.69 3.66
2364 4589 4.290622 CTGGGTGCTGCAAGGGGT 62.291 66.667 2.77 0.00 0.00 4.95
2394 4619 1.375268 GCACGAAGCTGAGAAGCCT 60.375 57.895 0.00 0.00 41.15 4.58
2548 4773 5.863397 CGTTCACATAAATGGTTCAGCAAAT 59.137 36.000 0.00 0.00 0.00 2.32
2562 4787 6.681777 GTTCAGCAAATAGAATGAACACCTT 58.318 36.000 11.02 0.00 46.81 3.50
2581 4806 3.554752 CCTTTCATTTTGCATGACCGGTT 60.555 43.478 9.42 0.00 0.00 4.44
2590 4815 3.149981 TGCATGACCGGTTGTATGAAAA 58.850 40.909 23.44 10.64 0.00 2.29
2625 4850 5.475909 TGCTTGCATTTCTCTTCTCTGAATT 59.524 36.000 0.00 0.00 0.00 2.17
2690 4915 3.391665 CTTCGGGCTGGCGAAGGAT 62.392 63.158 19.94 0.00 38.24 3.24
3296 5551 6.400422 CGTGTACGTTCTTTTCTGCATATAC 58.600 40.000 0.00 0.00 34.11 1.47
3331 5589 5.728255 CGAATTGTATTGTAGCAGCTACAC 58.272 41.667 31.15 21.19 45.13 2.90
3357 5615 1.342819 GTGACAGTGCTCTCTTGGTCT 59.657 52.381 0.00 0.00 0.00 3.85
3364 5622 0.034616 GCTCTCTTGGTCTGCACACT 59.965 55.000 0.00 0.00 0.00 3.55
3440 5708 3.128589 ACTTGCAGAATCGAGAGACTCTC 59.871 47.826 20.73 20.73 44.44 3.20
3514 5783 9.569122 TTCCTCTGTAAATTAATATTAGTGGCC 57.431 33.333 0.00 0.00 0.00 5.36
3515 5784 8.945193 TCCTCTGTAAATTAATATTAGTGGCCT 58.055 33.333 3.32 0.00 0.00 5.19
3524 5793 9.623000 AATTAATATTAGTGGCCTAAAACGTCT 57.377 29.630 3.32 0.00 36.76 4.18
3525 5794 9.623000 ATTAATATTAGTGGCCTAAAACGTCTT 57.377 29.630 3.32 0.00 36.76 3.01
3532 5801 9.754382 TTAGTGGCCTAAAACGTCTTATATTAG 57.246 33.333 3.32 0.00 30.20 1.73
3533 5802 7.789026 AGTGGCCTAAAACGTCTTATATTAGT 58.211 34.615 3.32 0.00 0.00 2.24
3534 5803 8.262933 AGTGGCCTAAAACGTCTTATATTAGTT 58.737 33.333 3.32 0.00 0.00 2.24
3535 5804 8.886719 GTGGCCTAAAACGTCTTATATTAGTTT 58.113 33.333 3.32 0.00 36.70 2.66
3555 5824 7.458409 AGTTTACGGATACTGAAAGAGTACA 57.542 36.000 0.00 0.00 40.09 2.90
3556 5825 8.064336 AGTTTACGGATACTGAAAGAGTACAT 57.936 34.615 0.00 0.00 40.09 2.29
3557 5826 8.529476 AGTTTACGGATACTGAAAGAGTACATT 58.471 33.333 0.00 0.00 40.09 2.71
3558 5827 9.793252 GTTTACGGATACTGAAAGAGTACATTA 57.207 33.333 0.00 0.00 40.09 1.90
3559 5828 9.793252 TTTACGGATACTGAAAGAGTACATTAC 57.207 33.333 0.00 0.00 40.09 1.89
3560 5829 7.400599 ACGGATACTGAAAGAGTACATTACA 57.599 36.000 0.00 0.00 40.09 2.41
3561 5830 7.481642 ACGGATACTGAAAGAGTACATTACAG 58.518 38.462 0.00 0.00 40.09 2.74
3562 5831 6.918569 CGGATACTGAAAGAGTACATTACAGG 59.081 42.308 0.00 0.00 40.09 4.00
3563 5832 7.201794 CGGATACTGAAAGAGTACATTACAGGA 60.202 40.741 0.00 0.00 40.09 3.86
3564 5833 8.643324 GGATACTGAAAGAGTACATTACAGGAT 58.357 37.037 0.00 0.00 40.09 3.24
3568 5837 9.220767 ACTGAAAGAGTACATTACAGGATTTTC 57.779 33.333 0.00 0.00 37.43 2.29
3569 5838 9.442047 CTGAAAGAGTACATTACAGGATTTTCT 57.558 33.333 0.00 0.00 34.07 2.52
3600 5869 0.673437 CAAAAGGGTCCATGCGTTGT 59.327 50.000 0.00 0.00 0.00 3.32
3604 5873 0.322187 AGGGTCCATGCGTTGTAACC 60.322 55.000 0.00 0.00 0.00 2.85
3633 5908 6.855763 AAAAACTCATAATCTCCAATGGCA 57.144 33.333 0.00 0.00 0.00 4.92
3682 5960 8.132362 AGATACACTATCACTCTCAATTTCGTC 58.868 37.037 0.00 0.00 37.65 4.20
3695 5975 9.611284 CTCTCAATTTCGTCAAATTATGAACAA 57.389 29.630 0.00 0.00 39.75 2.83
3886 6197 9.374838 GAATTGGCAAACATTTCTAGAATTGAT 57.625 29.630 26.35 16.22 36.81 2.57
3913 6224 6.290605 ACATCTTTTTGGAAATTGGTGGAAG 58.709 36.000 0.00 0.00 0.00 3.46
3980 6311 6.932901 TTTTCTGAAACGCATGATCATTTC 57.067 33.333 5.16 8.88 0.00 2.17
4042 6379 8.909708 TTTGTAAGTCATGAACAGTTTTTCAG 57.090 30.769 0.00 0.00 38.87 3.02
4108 6447 9.780413 GGCAAACTTTTGTTCAATTTCATTAAA 57.220 25.926 3.74 0.00 42.67 1.52
4159 6500 7.406799 AAACTGAACATTTTTAGATTTGCCG 57.593 32.000 0.00 0.00 0.00 5.69
4160 6501 6.325919 ACTGAACATTTTTAGATTTGCCGA 57.674 33.333 0.00 0.00 0.00 5.54
4161 6502 6.744112 ACTGAACATTTTTAGATTTGCCGAA 58.256 32.000 0.00 0.00 0.00 4.30
4162 6503 7.378181 ACTGAACATTTTTAGATTTGCCGAAT 58.622 30.769 0.00 0.00 0.00 3.34
4163 6504 7.329226 ACTGAACATTTTTAGATTTGCCGAATG 59.671 33.333 0.00 0.00 0.00 2.67
4164 6505 7.151308 TGAACATTTTTAGATTTGCCGAATGT 58.849 30.769 0.00 0.00 37.72 2.71
4165 6506 7.655328 TGAACATTTTTAGATTTGCCGAATGTT 59.345 29.630 10.28 10.28 44.30 2.71
4166 6507 7.961325 ACATTTTTAGATTTGCCGAATGTTT 57.039 28.000 0.00 0.00 33.81 2.83
4167 6508 8.376889 ACATTTTTAGATTTGCCGAATGTTTT 57.623 26.923 0.00 0.00 33.81 2.43
4168 6509 8.835439 ACATTTTTAGATTTGCCGAATGTTTTT 58.165 25.926 0.00 0.00 33.81 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.127196 ACTGACATATCTTCTTCCTCCTCAAC 60.127 42.308 0.00 0.00 0.00 3.18
28 29 6.279882 CAACTGACATATCTTCTTCCTCCTC 58.720 44.000 0.00 0.00 0.00 3.71
58 60 2.747855 GGCAGGCTTCCAAGTCCG 60.748 66.667 0.00 0.00 0.00 4.79
89 91 5.911178 AGAGAGAGAGGGAGATATCGGATAT 59.089 44.000 10.20 10.20 0.00 1.63
90 92 5.285401 AGAGAGAGAGGGAGATATCGGATA 58.715 45.833 0.00 0.00 0.00 2.59
91 93 4.111577 AGAGAGAGAGGGAGATATCGGAT 58.888 47.826 0.00 0.00 0.00 4.18
92 94 3.517901 GAGAGAGAGAGGGAGATATCGGA 59.482 52.174 0.00 0.00 0.00 4.55
93 95 3.263170 TGAGAGAGAGAGGGAGATATCGG 59.737 52.174 0.00 0.00 0.00 4.18
94 96 4.253685 GTGAGAGAGAGAGGGAGATATCG 58.746 52.174 0.00 0.00 0.00 2.92
95 97 4.042809 TGGTGAGAGAGAGAGGGAGATATC 59.957 50.000 0.00 0.00 0.00 1.63
96 98 3.986817 TGGTGAGAGAGAGAGGGAGATAT 59.013 47.826 0.00 0.00 0.00 1.63
97 99 3.137544 GTGGTGAGAGAGAGAGGGAGATA 59.862 52.174 0.00 0.00 0.00 1.98
103 105 1.824230 CTTGGTGGTGAGAGAGAGAGG 59.176 57.143 0.00 0.00 0.00 3.69
105 107 2.980246 TCTTGGTGGTGAGAGAGAGA 57.020 50.000 0.00 0.00 0.00 3.10
113 115 1.227249 TTCCCCTTTCTTGGTGGTGA 58.773 50.000 0.00 0.00 0.00 4.02
169 171 2.441532 CCGGCGACTTCTCCCCTA 60.442 66.667 9.30 0.00 0.00 3.53
277 283 1.670791 TCCTTTTCCTTGTCGCGTTT 58.329 45.000 5.77 0.00 0.00 3.60
363 377 2.168106 AGTGCACTCATCTCATCTGGAC 59.832 50.000 15.25 0.00 0.00 4.02
364 378 2.429971 GAGTGCACTCATCTCATCTGGA 59.570 50.000 36.23 0.00 42.42 3.86
488 502 2.486907 GGCTGGATTCCATCTTCCTCTG 60.487 54.545 5.70 0.00 30.82 3.35
489 503 1.773653 GGCTGGATTCCATCTTCCTCT 59.226 52.381 5.70 0.00 30.82 3.69
490 504 1.492176 TGGCTGGATTCCATCTTCCTC 59.508 52.381 5.70 0.00 30.82 3.71
491 505 1.213926 GTGGCTGGATTCCATCTTCCT 59.786 52.381 5.70 0.00 35.81 3.36
492 506 1.685148 GTGGCTGGATTCCATCTTCC 58.315 55.000 5.70 6.22 35.81 3.46
493 507 1.064463 TGGTGGCTGGATTCCATCTTC 60.064 52.381 5.70 0.11 35.75 2.87
494 508 1.002069 TGGTGGCTGGATTCCATCTT 58.998 50.000 5.70 0.00 35.75 2.40
495 509 0.257039 GTGGTGGCTGGATTCCATCT 59.743 55.000 5.70 0.00 35.75 2.90
543 557 0.305922 GAAAATGGAGCGATGAGGCG 59.694 55.000 0.00 0.00 38.18 5.52
549 563 1.271871 TGTGGTGGAAAATGGAGCGAT 60.272 47.619 0.00 0.00 0.00 4.58
555 569 4.670896 AGAAAAGTGTGGTGGAAAATGG 57.329 40.909 0.00 0.00 0.00 3.16
557 571 5.069119 GGAGAAGAAAAGTGTGGTGGAAAAT 59.931 40.000 0.00 0.00 0.00 1.82
561 575 2.158667 GGGAGAAGAAAAGTGTGGTGGA 60.159 50.000 0.00 0.00 0.00 4.02
569 583 1.766496 TGTGTCGGGGAGAAGAAAAGT 59.234 47.619 0.00 0.00 0.00 2.66
638 1086 3.245052 CCCTCCCCTGGATTTATCATGTC 60.245 52.174 0.00 0.00 0.00 3.06
639 1087 2.718609 CCCTCCCCTGGATTTATCATGT 59.281 50.000 0.00 0.00 0.00 3.21
672 1120 4.040047 TCTCATCTAAGAAGGGCATGGAA 58.960 43.478 0.00 0.00 0.00 3.53
673 1121 3.657610 TCTCATCTAAGAAGGGCATGGA 58.342 45.455 0.00 0.00 0.00 3.41
679 1127 2.366916 ACGCCATCTCATCTAAGAAGGG 59.633 50.000 0.00 0.00 35.21 3.95
695 1143 1.529226 CATCCTTTACACCAACGCCA 58.471 50.000 0.00 0.00 0.00 5.69
774 1223 2.866065 GCACGTTTCAATCAAAAGGGGG 60.866 50.000 0.00 0.00 30.13 5.40
847 1296 2.621338 CCTGAAAGCTACGCAGAATGA 58.379 47.619 10.86 0.00 39.69 2.57
930 1382 6.710744 TCTCACCAAGAACAAGAAACCTAATC 59.289 38.462 0.00 0.00 0.00 1.75
968 1420 6.099557 ACAAAATTCCCAAGGAACAAGATGAA 59.900 34.615 0.00 0.00 45.07 2.57
1083 1536 2.579624 TAAGCCATACCAGGAAGGGA 57.420 50.000 0.00 0.00 43.89 4.20
1140 1593 2.595750 ACAACATCGGGGGATCAAAA 57.404 45.000 0.00 0.00 0.00 2.44
1155 1608 9.595823 TCAGTATATACCTAGAAAGCAAACAAC 57.404 33.333 9.32 0.00 0.00 3.32
1267 1720 9.667107 CAGACTGAAACCTATTAGTATTGGAAA 57.333 33.333 0.00 0.00 31.90 3.13
1268 1721 9.042450 TCAGACTGAAACCTATTAGTATTGGAA 57.958 33.333 1.64 0.00 31.90 3.53
1269 1722 8.603898 TCAGACTGAAACCTATTAGTATTGGA 57.396 34.615 1.64 0.00 31.90 3.53
1270 1723 9.482627 GATCAGACTGAAACCTATTAGTATTGG 57.517 37.037 9.70 0.00 33.47 3.16
1271 1724 9.482627 GGATCAGACTGAAACCTATTAGTATTG 57.517 37.037 9.70 0.00 0.00 1.90
1272 1725 9.213777 TGGATCAGACTGAAACCTATTAGTATT 57.786 33.333 23.33 0.64 31.48 1.89
1273 1726 8.643324 GTGGATCAGACTGAAACCTATTAGTAT 58.357 37.037 23.33 1.01 31.48 2.12
1274 1727 7.839705 AGTGGATCAGACTGAAACCTATTAGTA 59.160 37.037 23.33 7.38 31.48 1.82
1275 1728 6.670027 AGTGGATCAGACTGAAACCTATTAGT 59.330 38.462 23.33 10.45 31.48 2.24
1276 1729 7.118496 AGTGGATCAGACTGAAACCTATTAG 57.882 40.000 23.33 0.00 31.48 1.73
1277 1730 6.183360 CGAGTGGATCAGACTGAAACCTATTA 60.183 42.308 23.33 8.67 31.48 0.98
1278 1731 5.394663 CGAGTGGATCAGACTGAAACCTATT 60.395 44.000 23.33 13.81 31.48 1.73
1279 1732 4.098654 CGAGTGGATCAGACTGAAACCTAT 59.901 45.833 23.33 15.78 31.48 2.57
1331 1788 9.079833 GTTCAATATCACTGATTTGGTTGAATG 57.920 33.333 16.30 0.19 36.90 2.67
1334 1791 8.408043 AAGTTCAATATCACTGATTTGGTTGA 57.592 30.769 0.00 1.80 0.00 3.18
1338 1795 7.966753 CACTGAAGTTCAATATCACTGATTTGG 59.033 37.037 7.06 0.00 0.00 3.28
1343 1800 7.763071 CAGATCACTGAAGTTCAATATCACTGA 59.237 37.037 17.45 7.56 46.03 3.41
1352 1809 4.687901 TGGACAGATCACTGAAGTTCAA 57.312 40.909 7.06 0.00 46.03 2.69
1372 1829 7.678947 ATGGTTCAGACTTCAGAATACTTTG 57.321 36.000 0.00 0.00 0.00 2.77
1375 1832 6.150140 GCAAATGGTTCAGACTTCAGAATACT 59.850 38.462 0.00 0.00 0.00 2.12
1376 1833 6.072508 TGCAAATGGTTCAGACTTCAGAATAC 60.073 38.462 0.00 0.00 0.00 1.89
1377 1834 6.003326 TGCAAATGGTTCAGACTTCAGAATA 58.997 36.000 0.00 0.00 0.00 1.75
1378 1835 4.828939 TGCAAATGGTTCAGACTTCAGAAT 59.171 37.500 0.00 0.00 0.00 2.40
1379 1836 4.206375 TGCAAATGGTTCAGACTTCAGAA 58.794 39.130 0.00 0.00 0.00 3.02
1380 1837 3.819368 TGCAAATGGTTCAGACTTCAGA 58.181 40.909 0.00 0.00 0.00 3.27
1381 1838 4.037208 ACTTGCAAATGGTTCAGACTTCAG 59.963 41.667 0.00 0.00 0.00 3.02
1382 1839 3.953612 ACTTGCAAATGGTTCAGACTTCA 59.046 39.130 0.00 0.00 0.00 3.02
1386 1843 4.045636 ACAACTTGCAAATGGTTCAGAC 57.954 40.909 14.40 0.00 0.00 3.51
1422 1879 6.098124 TGTCACAAGATTTCAACTGGGAAATT 59.902 34.615 9.81 0.00 45.05 1.82
1427 1884 5.707298 AGTATGTCACAAGATTTCAACTGGG 59.293 40.000 0.00 0.00 0.00 4.45
1431 1894 8.935844 TCATGTAGTATGTCACAAGATTTCAAC 58.064 33.333 0.00 0.00 0.00 3.18
1435 1898 8.886719 CATGTCATGTAGTATGTCACAAGATTT 58.113 33.333 4.53 0.00 0.00 2.17
1448 1912 6.620877 AAGGGAAAGTCATGTCATGTAGTA 57.379 37.500 12.54 0.00 0.00 1.82
1449 1913 5.505181 AAGGGAAAGTCATGTCATGTAGT 57.495 39.130 12.54 0.55 0.00 2.73
1450 1914 6.824305 AAAAGGGAAAGTCATGTCATGTAG 57.176 37.500 12.54 0.00 0.00 2.74
1510 1974 1.003349 TCGTCCTTCTCGGTTCTCTCT 59.997 52.381 0.00 0.00 0.00 3.10
1516 1980 0.745468 GGCTATCGTCCTTCTCGGTT 59.255 55.000 0.00 0.00 0.00 4.44
1540 2004 1.676968 CTCATGTGGGTTGGACGGA 59.323 57.895 0.00 0.00 0.00 4.69
1594 2058 3.489229 CGAACGTGAATGCTATCAGAGGA 60.489 47.826 0.00 0.00 0.00 3.71
1630 2094 3.152341 CTGCCTGAAGTTCTTGGTGATT 58.848 45.455 4.17 0.00 0.00 2.57
1657 2121 2.285368 CCACCTCCCCCTAGCACA 60.285 66.667 0.00 0.00 0.00 4.57
1682 2146 1.125711 ACGCACCCTTTGTAGACCCT 61.126 55.000 0.00 0.00 0.00 4.34
1720 2184 1.393603 GCTCCTCAATTGCTAACCCC 58.606 55.000 0.00 0.00 0.00 4.95
1727 2191 2.796651 CAGCGGCTCCTCAATTGC 59.203 61.111 0.00 0.00 0.00 3.56
1729 2193 2.821366 CGCAGCGGCTCCTCAATT 60.821 61.111 7.00 0.00 38.10 2.32
1887 2513 5.183713 TGACCTCAGCCTGAAAACATAAATG 59.816 40.000 0.00 0.00 0.00 2.32
1888 2514 5.324409 TGACCTCAGCCTGAAAACATAAAT 58.676 37.500 0.00 0.00 0.00 1.40
2177 2832 9.476761 GGAAATACATCGAAATTGCAAAATTTC 57.523 29.630 1.71 9.32 42.67 2.17
2180 2835 8.034215 TGAGGAAATACATCGAAATTGCAAAAT 58.966 29.630 1.71 0.00 31.38 1.82
2349 4574 3.513750 AAGACCCCTTGCAGCACCC 62.514 63.158 0.00 0.00 0.00 4.61
2394 4619 5.163248 TGTCTTGAAGTCCCTGTAAATGACA 60.163 40.000 0.00 0.00 36.35 3.58
2548 4773 7.048629 TGCAAAATGAAAGGTGTTCATTCTA 57.951 32.000 13.17 0.98 45.36 2.10
2562 4787 2.363680 ACAACCGGTCATGCAAAATGAA 59.636 40.909 8.04 0.00 0.00 2.57
2570 4795 3.840890 TTTTCATACAACCGGTCATGC 57.159 42.857 8.04 0.00 0.00 4.06
2581 4806 9.787532 GCAAGCAAGAAGTATTATTTTCATACA 57.212 29.630 0.00 0.00 30.55 2.29
2590 4815 8.517062 AGAGAAATGCAAGCAAGAAGTATTAT 57.483 30.769 0.00 0.00 0.00 1.28
3135 5389 2.994995 AGGGTGGCGACGATGTCA 60.995 61.111 0.00 0.00 32.09 3.58
3296 5551 2.624316 ACAATTCGCACAAGCATCAG 57.376 45.000 0.00 0.00 42.27 2.90
3331 5589 1.818060 AGAGAGCACTGTCACTAGCTG 59.182 52.381 0.00 0.00 37.48 4.24
3337 5595 1.342819 AGACCAAGAGAGCACTGTCAC 59.657 52.381 0.00 0.00 0.00 3.67
3346 5604 3.519579 CATAGTGTGCAGACCAAGAGAG 58.480 50.000 10.88 0.00 0.00 3.20
3364 5622 4.780021 AGAGAGAGAAAGACCCTTTGCATA 59.220 41.667 0.00 0.00 0.00 3.14
3369 5627 3.247162 AGCAGAGAGAGAAAGACCCTTT 58.753 45.455 0.00 0.00 0.00 3.11
3440 5708 0.817634 TAGGCCCATTTTGATCCGCG 60.818 55.000 0.00 0.00 0.00 6.46
3507 5776 8.917088 ACTAATATAAGACGTTTTAGGCCACTA 58.083 33.333 5.01 0.00 0.00 2.74
3508 5777 7.789026 ACTAATATAAGACGTTTTAGGCCACT 58.211 34.615 5.01 0.00 0.00 4.00
3509 5778 8.429493 AACTAATATAAGACGTTTTAGGCCAC 57.571 34.615 5.01 0.00 0.00 5.01
3529 5798 9.013229 TGTACTCTTTCAGTATCCGTAAACTAA 57.987 33.333 0.00 0.00 39.90 2.24
3530 5799 8.565896 TGTACTCTTTCAGTATCCGTAAACTA 57.434 34.615 0.00 0.00 39.90 2.24
3531 5800 7.458409 TGTACTCTTTCAGTATCCGTAAACT 57.542 36.000 0.00 0.00 39.90 2.66
3532 5801 8.699283 AATGTACTCTTTCAGTATCCGTAAAC 57.301 34.615 0.00 0.00 39.90 2.01
3533 5802 9.793252 GTAATGTACTCTTTCAGTATCCGTAAA 57.207 33.333 0.00 0.00 39.90 2.01
3534 5803 8.959548 TGTAATGTACTCTTTCAGTATCCGTAA 58.040 33.333 0.00 0.00 39.90 3.18
3535 5804 8.510243 TGTAATGTACTCTTTCAGTATCCGTA 57.490 34.615 0.00 0.00 39.90 4.02
3536 5805 7.400599 TGTAATGTACTCTTTCAGTATCCGT 57.599 36.000 0.00 0.00 39.90 4.69
3537 5806 6.918569 CCTGTAATGTACTCTTTCAGTATCCG 59.081 42.308 11.48 0.00 39.90 4.18
3538 5807 8.008513 TCCTGTAATGTACTCTTTCAGTATCC 57.991 38.462 11.48 0.00 39.90 2.59
3542 5811 9.220767 GAAAATCCTGTAATGTACTCTTTCAGT 57.779 33.333 11.48 0.00 39.41 3.41
3543 5812 9.442047 AGAAAATCCTGTAATGTACTCTTTCAG 57.558 33.333 0.00 1.98 0.00 3.02
3565 5834 9.185680 GGACCCTTTTGCTAATAAAGATAGAAA 57.814 33.333 0.00 0.00 35.16 2.52
3566 5835 8.333235 TGGACCCTTTTGCTAATAAAGATAGAA 58.667 33.333 0.00 0.00 35.16 2.10
3567 5836 7.867921 TGGACCCTTTTGCTAATAAAGATAGA 58.132 34.615 0.00 0.00 35.16 1.98
3568 5837 8.571336 CATGGACCCTTTTGCTAATAAAGATAG 58.429 37.037 0.00 0.00 35.16 2.08
3569 5838 7.014230 GCATGGACCCTTTTGCTAATAAAGATA 59.986 37.037 0.00 0.00 35.16 1.98
3570 5839 6.183360 GCATGGACCCTTTTGCTAATAAAGAT 60.183 38.462 0.00 0.00 35.16 2.40
3571 5840 5.127031 GCATGGACCCTTTTGCTAATAAAGA 59.873 40.000 0.00 0.00 35.16 2.52
3572 5841 5.351458 GCATGGACCCTTTTGCTAATAAAG 58.649 41.667 0.00 0.00 33.42 1.85
3573 5842 4.142271 CGCATGGACCCTTTTGCTAATAAA 60.142 41.667 0.00 0.00 32.97 1.40
3574 5843 3.380004 CGCATGGACCCTTTTGCTAATAA 59.620 43.478 0.00 0.00 32.97 1.40
3577 5846 1.173043 CGCATGGACCCTTTTGCTAA 58.827 50.000 0.00 0.00 32.97 3.09
3589 5858 0.035036 TTCCGGTTACAACGCATGGA 59.965 50.000 0.00 0.00 0.00 3.41
3615 5885 5.048224 GGTCATTGCCATTGGAGATTATGAG 60.048 44.000 6.95 0.00 0.00 2.90
3633 5908 4.219507 TCGGTGCAATAAAATGTGGTCATT 59.780 37.500 0.00 0.00 44.94 2.57
3721 6019 9.965824 ATGAATTTGAGAAATGTTTACGAGTTT 57.034 25.926 0.00 0.00 0.00 2.66
3722 6020 9.398170 CATGAATTTGAGAAATGTTTACGAGTT 57.602 29.630 0.00 0.00 0.00 3.01
3723 6021 8.783093 TCATGAATTTGAGAAATGTTTACGAGT 58.217 29.630 0.00 0.00 0.00 4.18
3724 6022 9.611284 TTCATGAATTTGAGAAATGTTTACGAG 57.389 29.630 3.38 0.00 0.00 4.18
3725 6023 9.393249 GTTCATGAATTTGAGAAATGTTTACGA 57.607 29.630 12.12 0.00 0.00 3.43
3726 6024 9.179552 TGTTCATGAATTTGAGAAATGTTTACG 57.820 29.630 12.12 0.00 0.00 3.18
3729 6027 9.603921 AACTGTTCATGAATTTGAGAAATGTTT 57.396 25.926 12.12 0.00 0.00 2.83
3730 6028 9.603921 AAACTGTTCATGAATTTGAGAAATGTT 57.396 25.926 12.12 2.93 0.00 2.71
3731 6029 9.603921 AAAACTGTTCATGAATTTGAGAAATGT 57.396 25.926 12.12 0.00 0.00 2.71
3851 6154 8.905850 AGAAATGTTTGCCAATTCAAGATTTTT 58.094 25.926 0.00 0.00 35.74 1.94
3852 6155 8.454570 AGAAATGTTTGCCAATTCAAGATTTT 57.545 26.923 0.00 0.00 35.74 1.82
3853 6156 9.211485 CTAGAAATGTTTGCCAATTCAAGATTT 57.789 29.630 0.00 0.00 35.74 2.17
3886 6197 6.054295 CCACCAATTTCCAAAAAGATGTTCA 58.946 36.000 0.00 0.00 0.00 3.18
3893 6204 7.806409 AATTCTTCCACCAATTTCCAAAAAG 57.194 32.000 0.00 0.00 0.00 2.27
3944 6274 7.061905 TGCGTTTCAGAAAATGTTCGTTAAAAA 59.938 29.630 0.00 0.00 38.90 1.94
3945 6275 6.527023 TGCGTTTCAGAAAATGTTCGTTAAAA 59.473 30.769 0.00 0.00 38.90 1.52
3967 6297 4.675565 GCTGATTCAAGAAATGATCATGCG 59.324 41.667 9.46 0.00 38.03 4.73
4079 6418 7.206981 TGAAATTGAACAAAAGTTTGCCAAA 57.793 28.000 12.90 0.00 41.79 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.