Multiple sequence alignment - TraesCS4D01G272700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G272700 chr4D 100.000 4121 0 0 1 4121 442750746 442746626 0.000000e+00 7611.0
1 TraesCS4D01G272700 chr4D 75.060 830 128 52 2291 3091 442742256 442741477 3.090000e-81 313.0
2 TraesCS4D01G272700 chr4D 89.815 216 20 2 3906 4121 504227679 504227892 4.060000e-70 276.0
3 TraesCS4D01G272700 chr4D 77.162 451 86 12 1702 2139 442888909 442888463 3.180000e-61 246.0
4 TraesCS4D01G272700 chr4D 78.738 301 48 8 1867 2158 442761640 442761347 1.960000e-43 187.0
5 TraesCS4D01G272700 chr4B 93.688 1616 58 12 2269 3850 551241415 551239810 0.000000e+00 2379.0
6 TraesCS4D01G272700 chr4B 91.751 885 36 11 707 1586 551242998 551242146 0.000000e+00 1195.0
7 TraesCS4D01G272700 chr4B 92.659 613 30 4 1621 2224 551242143 551241537 0.000000e+00 869.0
8 TraesCS4D01G272700 chr4B 76.119 536 98 19 1627 2146 551788798 551788277 1.900000e-63 254.0
9 TraesCS4D01G272700 chr4B 87.619 210 26 0 3909 4118 27118809 27119018 1.140000e-60 244.0
10 TraesCS4D01G272700 chr4B 78.056 319 57 8 1847 2158 551749942 551749630 5.440000e-44 189.0
11 TraesCS4D01G272700 chr4B 77.429 319 59 7 1847 2158 551696362 551696050 1.180000e-40 178.0
12 TraesCS4D01G272700 chr4B 95.050 101 5 0 2197 2297 443547452 443547352 4.260000e-35 159.0
13 TraesCS4D01G272700 chr4B 95.918 98 2 2 2197 2293 433617255 433617351 1.530000e-34 158.0
14 TraesCS4D01G272700 chr7D 99.295 709 3 2 1 709 134503850 134504556 0.000000e+00 1280.0
15 TraesCS4D01G272700 chr7D 87.850 214 25 1 3907 4119 107862547 107862334 2.460000e-62 250.0
16 TraesCS4D01G272700 chr7D 97.222 36 1 0 1585 1620 589262969 589263004 1.240000e-05 62.1
17 TraesCS4D01G272700 chr5A 97.167 706 18 2 1 705 705523574 705522870 0.000000e+00 1192.0
18 TraesCS4D01G272700 chr5A 95.281 551 18 7 159 709 12876003 12876545 0.000000e+00 867.0
19 TraesCS4D01G272700 chr6D 96.384 719 14 3 1 709 112956372 112957088 0.000000e+00 1173.0
20 TraesCS4D01G272700 chr6D 92.857 42 3 0 1579 1620 121023123 121023082 1.240000e-05 62.1
21 TraesCS4D01G272700 chr7B 96.176 706 25 2 1 705 215233877 215234581 0.000000e+00 1153.0
22 TraesCS4D01G272700 chr7B 95.122 41 2 0 1580 1620 236752710 236752670 9.560000e-07 65.8
23 TraesCS4D01G272700 chr7B 95.122 41 1 1 1581 1620 373850235 373850275 3.440000e-06 63.9
24 TraesCS4D01G272700 chr7B 95.122 41 1 1 1581 1620 373879470 373879510 3.440000e-06 63.9
25 TraesCS4D01G272700 chr1D 95.676 717 21 7 1 709 46107015 46106301 0.000000e+00 1144.0
26 TraesCS4D01G272700 chr5B 93.557 714 23 8 1 709 22527683 22526988 0.000000e+00 1042.0
27 TraesCS4D01G272700 chr5B 89.831 118 10 2 2200 2316 278232214 278232330 2.570000e-32 150.0
28 TraesCS4D01G272700 chr3B 91.036 714 45 6 1 709 158148168 158148867 0.000000e+00 946.0
29 TraesCS4D01G272700 chr3B 88.372 215 25 0 3907 4121 716739350 716739564 4.090000e-65 259.0
30 TraesCS4D01G272700 chr3B 92.683 41 3 0 1580 1620 370944372 370944332 4.450000e-05 60.2
31 TraesCS4D01G272700 chr4A 90.055 724 39 10 1 709 720314124 720313419 0.000000e+00 907.0
32 TraesCS4D01G272700 chr4A 92.840 419 21 3 3294 3712 24821367 24821776 2.120000e-167 599.0
33 TraesCS4D01G272700 chr4A 74.328 818 131 52 2301 3090 24824576 24825342 1.460000e-69 274.0
34 TraesCS4D01G272700 chr4A 94.949 99 5 0 2195 2293 38740436 38740534 5.520000e-34 156.0
35 TraesCS4D01G272700 chr3A 93.029 373 14 1 1 373 300790415 300790055 6.060000e-148 534.0
36 TraesCS4D01G272700 chr1B 92.011 363 11 5 4 361 49096328 49096677 1.030000e-135 494.0
37 TraesCS4D01G272700 chr2D 90.566 212 19 1 3911 4121 536478747 536478536 3.140000e-71 279.0
38 TraesCS4D01G272700 chr2D 97.500 40 1 0 1581 1620 605918869 605918830 7.390000e-08 69.4
39 TraesCS4D01G272700 chr6B 88.732 213 23 1 3909 4121 710894988 710895199 4.090000e-65 259.0
40 TraesCS4D01G272700 chr6B 88.263 213 24 1 3909 4121 710945630 710945419 1.900000e-63 254.0
41 TraesCS4D01G272700 chr6B 87.678 211 25 1 3909 4119 710931950 710931741 1.140000e-60 244.0
42 TraesCS4D01G272700 chr6B 95.146 103 2 3 2193 2293 544634235 544634134 4.260000e-35 159.0
43 TraesCS4D01G272700 chr5D 90.404 198 18 1 3907 4104 111958040 111957844 4.090000e-65 259.0
44 TraesCS4D01G272700 chr2B 98.925 93 1 0 2200 2292 496962184 496962092 2.550000e-37 167.0
45 TraesCS4D01G272700 chr2B 94.175 103 4 2 2193 2293 40437945 40438047 5.520000e-34 156.0
46 TraesCS4D01G272700 chr2B 90.991 111 9 1 2186 2296 54765890 54765999 9.230000e-32 148.0
47 TraesCS4D01G272700 chr2B 97.436 39 1 0 1582 1620 666468092 666468130 2.660000e-07 67.6
48 TraesCS4D01G272700 chr2B 97.222 36 1 0 1585 1620 168482060 168482025 1.240000e-05 62.1
49 TraesCS4D01G272700 chr1A 96.970 99 2 1 2199 2297 118503598 118503695 9.160000e-37 165.0
50 TraesCS4D01G272700 chrUn 82.418 91 12 3 1847 1935 478612952 478613040 4.420000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G272700 chr4D 442746626 442750746 4120 True 7611.0 7611 100.000000 1 4121 1 chr4D.!!$R2 4120
1 TraesCS4D01G272700 chr4D 442741477 442742256 779 True 313.0 313 75.060000 2291 3091 1 chr4D.!!$R1 800
2 TraesCS4D01G272700 chr4B 551239810 551242998 3188 True 1481.0 2379 92.699333 707 3850 3 chr4B.!!$R5 3143
3 TraesCS4D01G272700 chr4B 551788277 551788798 521 True 254.0 254 76.119000 1627 2146 1 chr4B.!!$R4 519
4 TraesCS4D01G272700 chr7D 134503850 134504556 706 False 1280.0 1280 99.295000 1 709 1 chr7D.!!$F1 708
5 TraesCS4D01G272700 chr5A 705522870 705523574 704 True 1192.0 1192 97.167000 1 705 1 chr5A.!!$R1 704
6 TraesCS4D01G272700 chr5A 12876003 12876545 542 False 867.0 867 95.281000 159 709 1 chr5A.!!$F1 550
7 TraesCS4D01G272700 chr6D 112956372 112957088 716 False 1173.0 1173 96.384000 1 709 1 chr6D.!!$F1 708
8 TraesCS4D01G272700 chr7B 215233877 215234581 704 False 1153.0 1153 96.176000 1 705 1 chr7B.!!$F1 704
9 TraesCS4D01G272700 chr1D 46106301 46107015 714 True 1144.0 1144 95.676000 1 709 1 chr1D.!!$R1 708
10 TraesCS4D01G272700 chr5B 22526988 22527683 695 True 1042.0 1042 93.557000 1 709 1 chr5B.!!$R1 708
11 TraesCS4D01G272700 chr3B 158148168 158148867 699 False 946.0 946 91.036000 1 709 1 chr3B.!!$F1 708
12 TraesCS4D01G272700 chr4A 720313419 720314124 705 True 907.0 907 90.055000 1 709 1 chr4A.!!$R1 708
13 TraesCS4D01G272700 chr4A 24821367 24825342 3975 False 436.5 599 83.584000 2301 3712 2 chr4A.!!$F2 1411

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
739 781 0.038166 TCCAATCCACAGCCCAACTC 59.962 55.000 0.00 0.00 0.00 3.01 F
741 783 0.038744 CAATCCACAGCCCAACTCCT 59.961 55.000 0.00 0.00 0.00 3.69 F
1364 1410 0.242825 TAGAAACTGGCCGTCTGACG 59.757 55.000 22.49 22.49 42.11 4.35 F
1453 1499 1.546476 CGGCTCACTGGTAGACTCTTT 59.454 52.381 0.00 0.00 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2598 3512 1.815003 CTTCATCAAACTCCAGGGCAC 59.185 52.381 0.0 0.0 0.00 5.01 R
2654 3569 8.834465 AGTAACAGCAGCAAATTATCTATGAAG 58.166 33.333 0.0 0.0 0.00 3.02 R
2794 3733 3.290710 GGATTCCACTTGCATACCACAT 58.709 45.455 0.0 0.0 0.00 3.21 R
3405 4378 2.509964 GGAAGTAGGGGTCACCATTGAT 59.490 50.000 0.0 0.0 43.89 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
705 747 5.464057 TGAGAGCAAAAATGCATTTCAGTTG 59.536 36.000 24.28 23.13 32.74 3.16
712 754 5.412526 AAATGCATTTCAGTTGTTGCAAG 57.587 34.783 18.99 0.00 46.97 4.01
732 774 2.084546 GTACAAGGTCCAATCCACAGC 58.915 52.381 0.00 0.00 0.00 4.40
735 777 1.434513 AAGGTCCAATCCACAGCCCA 61.435 55.000 0.00 0.00 0.00 5.36
739 781 0.038166 TCCAATCCACAGCCCAACTC 59.962 55.000 0.00 0.00 0.00 3.01
740 782 0.967380 CCAATCCACAGCCCAACTCC 60.967 60.000 0.00 0.00 0.00 3.85
741 783 0.038744 CAATCCACAGCCCAACTCCT 59.961 55.000 0.00 0.00 0.00 3.69
743 785 1.898863 ATCCACAGCCCAACTCCTAT 58.101 50.000 0.00 0.00 0.00 2.57
744 786 1.204146 TCCACAGCCCAACTCCTATC 58.796 55.000 0.00 0.00 0.00 2.08
745 787 0.911769 CCACAGCCCAACTCCTATCA 59.088 55.000 0.00 0.00 0.00 2.15
746 788 1.281867 CCACAGCCCAACTCCTATCAA 59.718 52.381 0.00 0.00 0.00 2.57
747 789 2.092212 CCACAGCCCAACTCCTATCAAT 60.092 50.000 0.00 0.00 0.00 2.57
748 790 3.136443 CCACAGCCCAACTCCTATCAATA 59.864 47.826 0.00 0.00 0.00 1.90
749 791 4.202503 CCACAGCCCAACTCCTATCAATAT 60.203 45.833 0.00 0.00 0.00 1.28
762 804 9.616156 ACTCCTATCAATATACTAGTACCATCG 57.384 37.037 4.31 0.00 0.00 3.84
808 850 3.480505 TGCTCTATGTGCTGCATGTAT 57.519 42.857 5.27 3.99 38.47 2.29
810 852 3.811497 TGCTCTATGTGCTGCATGTATTC 59.189 43.478 5.27 0.00 38.47 1.75
816 858 2.002586 GTGCTGCATGTATTCGACTGT 58.997 47.619 5.27 0.00 0.00 3.55
885 930 9.612620 CTCATTTAATTTCTACAGTTGTCCAAC 57.387 33.333 1.90 1.90 41.45 3.77
891 936 3.211045 TCTACAGTTGTCCAACAAAGGC 58.789 45.455 12.32 0.00 40.15 4.35
1020 1065 4.444306 CCGATGTTTATTAAGGAGCAGGGA 60.444 45.833 0.00 0.00 0.00 4.20
1092 1137 6.539826 CCAGTGATTACATCAATTGTGCTCTA 59.460 38.462 5.13 0.00 41.69 2.43
1136 1181 5.178797 AGTCCCTCGAAATTATGTGAGTTG 58.821 41.667 0.00 0.00 0.00 3.16
1169 1214 8.929260 ATGCATGAGTGATCCTTCAATTTATA 57.071 30.769 0.00 0.00 32.48 0.98
1284 1329 8.652463 GCTTTAGTAAGTTTTGCTTCAAACAAA 58.348 29.630 8.73 0.00 38.57 2.83
1330 1375 8.656849 GTTCTGTATATTGGAGTGTGTAACTTG 58.343 37.037 0.00 0.00 40.07 3.16
1364 1410 0.242825 TAGAAACTGGCCGTCTGACG 59.757 55.000 22.49 22.49 42.11 4.35
1381 1427 7.330318 CGTCTGACGAATTCAAATATAGTGTG 58.670 38.462 24.86 0.00 46.05 3.82
1382 1428 7.220108 CGTCTGACGAATTCAAATATAGTGTGA 59.780 37.037 24.86 0.00 46.05 3.58
1383 1429 9.035607 GTCTGACGAATTCAAATATAGTGTGAT 57.964 33.333 6.22 0.00 32.21 3.06
1384 1430 9.034544 TCTGACGAATTCAAATATAGTGTGATG 57.965 33.333 6.22 0.00 32.21 3.07
1453 1499 1.546476 CGGCTCACTGGTAGACTCTTT 59.454 52.381 0.00 0.00 0.00 2.52
1456 1502 3.580731 GCTCACTGGTAGACTCTTTGAC 58.419 50.000 0.00 0.00 0.00 3.18
1457 1503 3.257127 GCTCACTGGTAGACTCTTTGACT 59.743 47.826 0.00 0.00 0.00 3.41
1458 1504 4.804108 CTCACTGGTAGACTCTTTGACTG 58.196 47.826 0.00 0.00 0.00 3.51
1459 1505 3.005897 TCACTGGTAGACTCTTTGACTGC 59.994 47.826 0.00 0.00 0.00 4.40
1461 1507 2.564947 CTGGTAGACTCTTTGACTGCCT 59.435 50.000 0.00 0.00 41.81 4.75
1462 1508 2.563179 TGGTAGACTCTTTGACTGCCTC 59.437 50.000 0.00 0.00 41.81 4.70
1463 1509 2.829120 GGTAGACTCTTTGACTGCCTCT 59.171 50.000 0.00 0.00 39.29 3.69
1464 1510 4.017808 GGTAGACTCTTTGACTGCCTCTA 58.982 47.826 0.00 0.00 39.29 2.43
1465 1511 4.463186 GGTAGACTCTTTGACTGCCTCTAA 59.537 45.833 0.00 0.00 39.29 2.10
1466 1512 5.128008 GGTAGACTCTTTGACTGCCTCTAAT 59.872 44.000 0.00 0.00 39.29 1.73
1467 1513 5.337578 AGACTCTTTGACTGCCTCTAATC 57.662 43.478 0.00 0.00 0.00 1.75
1586 1633 7.015877 CAGCTTGAAGTCTTCCGTTAAAATAC 58.984 38.462 10.12 0.00 0.00 1.89
1587 1634 6.935208 AGCTTGAAGTCTTCCGTTAAAATACT 59.065 34.615 10.12 0.00 0.00 2.12
1588 1635 8.092687 AGCTTGAAGTCTTCCGTTAAAATACTA 58.907 33.333 10.12 0.00 0.00 1.82
1589 1636 8.167345 GCTTGAAGTCTTCCGTTAAAATACTAC 58.833 37.037 10.12 0.00 0.00 2.73
1591 1638 7.899973 TGAAGTCTTCCGTTAAAATACTACCT 58.100 34.615 10.12 0.00 0.00 3.08
1592 1639 8.031277 TGAAGTCTTCCGTTAAAATACTACCTC 58.969 37.037 10.12 0.00 0.00 3.85
1593 1640 6.871844 AGTCTTCCGTTAAAATACTACCTCC 58.128 40.000 0.00 0.00 0.00 4.30
1594 1641 6.438425 AGTCTTCCGTTAAAATACTACCTCCA 59.562 38.462 0.00 0.00 0.00 3.86
1595 1642 7.125356 AGTCTTCCGTTAAAATACTACCTCCAT 59.875 37.037 0.00 0.00 0.00 3.41
1597 1644 6.165700 TCCGTTAAAATACTACCTCCATCC 57.834 41.667 0.00 0.00 0.00 3.51
1598 1645 5.901276 TCCGTTAAAATACTACCTCCATCCT 59.099 40.000 0.00 0.00 0.00 3.24
1599 1646 7.068702 TCCGTTAAAATACTACCTCCATCCTA 58.931 38.462 0.00 0.00 0.00 2.94
1601 1648 8.206189 CCGTTAAAATACTACCTCCATCCTAAA 58.794 37.037 0.00 0.00 0.00 1.85
1602 1649 9.603921 CGTTAAAATACTACCTCCATCCTAAAA 57.396 33.333 0.00 0.00 0.00 1.52
1608 1655 9.853177 AATACTACCTCCATCCTAAAATTCTTG 57.147 33.333 0.00 0.00 0.00 3.02
1610 1657 7.339482 ACTACCTCCATCCTAAAATTCTTGTC 58.661 38.462 0.00 0.00 0.00 3.18
1612 1659 6.794534 ACCTCCATCCTAAAATTCTTGTCTT 58.205 36.000 0.00 0.00 0.00 3.01
1613 1660 7.928873 ACCTCCATCCTAAAATTCTTGTCTTA 58.071 34.615 0.00 0.00 0.00 2.10
1614 1661 8.049721 ACCTCCATCCTAAAATTCTTGTCTTAG 58.950 37.037 0.00 0.00 0.00 2.18
1615 1662 8.267894 CCTCCATCCTAAAATTCTTGTCTTAGA 58.732 37.037 0.00 0.00 0.00 2.10
1616 1663 9.844257 CTCCATCCTAAAATTCTTGTCTTAGAT 57.156 33.333 0.00 0.00 0.00 1.98
1699 1746 6.259550 AGCAATTGGTTGTCTCTATTGTTC 57.740 37.500 3.82 0.00 37.65 3.18
1700 1747 5.183904 AGCAATTGGTTGTCTCTATTGTTCC 59.816 40.000 3.82 0.00 37.65 3.62
1728 1775 3.366396 AGGGTGGTAGTGAGTACATCAG 58.634 50.000 0.00 0.00 39.07 2.90
1729 1776 3.011369 AGGGTGGTAGTGAGTACATCAGA 59.989 47.826 0.00 0.00 39.07 3.27
1872 1926 8.702163 TTTTTGTTCAGTTCTCTGGAAATTTC 57.298 30.769 9.83 9.83 41.59 2.17
1881 1935 5.456921 TCTCTGGAAATTTCTGGGCTAAT 57.543 39.130 17.42 0.00 0.00 1.73
1922 1976 5.104151 TGGCAACAGTGGATGGAAGATTATA 60.104 40.000 0.00 0.00 46.17 0.98
1945 1999 2.632512 ACATTTTGACCGGCCATCTTTT 59.367 40.909 0.00 0.00 0.00 2.27
2021 2079 7.956420 TGTTGTAGTACACTGATAACTTTGG 57.044 36.000 1.43 0.00 0.00 3.28
2134 2192 9.542462 CTTTAGCTTACAATGGCTACTATGTAA 57.458 33.333 0.00 5.31 40.21 2.41
2149 2207 2.856760 TGTAAGATCCCTCTCAGGCT 57.143 50.000 0.00 0.00 32.73 4.58
2199 2261 8.142551 GCATTAGTTAGTGTACTACTGGCTATT 58.857 37.037 7.85 4.99 40.65 1.73
2205 2267 9.890352 GTTAGTGTACTACTGGCTATTATGTAC 57.110 37.037 7.85 0.00 40.65 2.90
2218 2280 2.832643 TATGTACTCCCTCCGTTCCA 57.167 50.000 0.00 0.00 0.00 3.53
2224 2286 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2226 2288 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2228 2290 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2231 2293 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2232 2294 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2234 2296 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2235 2297 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2241 2303 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
2242 2304 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
2301 2440 4.522022 CGGAGGGAGTAATATCTAACGGTT 59.478 45.833 0.00 0.00 0.00 4.44
2462 3376 1.811965 TGCTCAATTTGATGGTGGTCG 59.188 47.619 0.00 0.00 0.00 4.79
2563 3477 2.027745 TCTGGCAGAGGTTTGTCATCTC 60.028 50.000 14.43 0.00 34.81 2.75
2580 3494 3.823281 TCTCAACAGGTTTCCGTTACA 57.177 42.857 0.00 0.00 0.00 2.41
2654 3569 2.849294 AGAAGAGGTTGGCTGTTCTC 57.151 50.000 0.00 0.00 0.00 2.87
2794 3733 6.934645 CCCAGAAGTAAGTGATGTCTTTTGTA 59.065 38.462 0.00 0.00 0.00 2.41
2800 3739 7.224297 AGTAAGTGATGTCTTTTGTATGTGGT 58.776 34.615 0.00 0.00 0.00 4.16
2854 3797 8.724229 TCTTTTATGTGATGTTTGATCTGTCTG 58.276 33.333 0.00 0.00 0.00 3.51
2858 3801 3.755378 GTGATGTTTGATCTGTCTGCCTT 59.245 43.478 0.00 0.00 0.00 4.35
2979 3922 4.487948 TGCTATGCATGCTTTTGAAAGAC 58.512 39.130 20.33 4.06 33.90 3.01
2990 3933 5.005586 TGCTTTTGAAAGACAATTTGCGAAG 59.994 36.000 7.63 0.00 38.28 3.79
3003 3946 9.516091 GACAATTTGCGAAGTGAAATTAATTTC 57.484 29.630 27.02 27.02 44.83 2.17
3031 3974 1.137086 AGCTTGATGATACGCCGAAGT 59.863 47.619 0.00 0.00 0.00 3.01
3194 4160 6.293698 AGATCACTTCTGTATTATGCATGCA 58.706 36.000 25.04 25.04 31.79 3.96
3274 4247 6.372937 CGAAGTCCTATGAGCAGTATATCAGA 59.627 42.308 0.00 0.00 0.00 3.27
3324 4297 4.176120 GGAATCCTTCCTCCACATGATT 57.824 45.455 0.00 0.00 46.57 2.57
3325 4298 3.887716 GGAATCCTTCCTCCACATGATTG 59.112 47.826 0.00 0.00 46.57 2.67
3343 4316 6.882610 TGATTGAAGCAACAGTGTTAAGAT 57.117 33.333 8.49 0.00 0.00 2.40
3345 4318 7.140705 TGATTGAAGCAACAGTGTTAAGATTG 58.859 34.615 8.49 0.00 0.00 2.67
3368 4341 8.634335 TTGTGAAGAATGAGATAATGGTCAAA 57.366 30.769 0.00 0.00 0.00 2.69
3405 4378 6.718912 TGTTGTCAGATTATGAAATTGGACCA 59.281 34.615 0.00 0.00 40.43 4.02
3519 4492 3.028130 TCACACTGAGTGTAGGACAACA 58.972 45.455 18.99 0.00 45.65 3.33
3547 4520 2.691011 TCAAGGGGTGTACAAGCAAAAC 59.309 45.455 0.00 0.00 0.00 2.43
3632 4610 9.052365 ACCCAAAGAGAATTTAACTCTAGAGAT 57.948 33.333 26.57 17.12 42.85 2.75
3653 4631 9.463443 AGAGATTTAAATTGGTTTGAACTTTCG 57.537 29.630 1.43 0.00 0.00 3.46
3658 4636 4.830826 ATTGGTTTGAACTTTCGGTCTC 57.169 40.909 0.00 0.00 0.00 3.36
3665 4643 2.037251 TGAACTTTCGGTCTCCCTTCTG 59.963 50.000 0.00 0.00 0.00 3.02
3696 4674 8.925161 TTAACTCTCTGTTTTCATTGTTTTGG 57.075 30.769 0.00 0.00 39.89 3.28
3697 4675 6.530019 ACTCTCTGTTTTCATTGTTTTGGT 57.470 33.333 0.00 0.00 0.00 3.67
3698 4676 7.639113 ACTCTCTGTTTTCATTGTTTTGGTA 57.361 32.000 0.00 0.00 0.00 3.25
3700 4678 6.801575 TCTCTGTTTTCATTGTTTTGGTACC 58.198 36.000 4.43 4.43 0.00 3.34
3701 4679 6.605594 TCTCTGTTTTCATTGTTTTGGTACCT 59.394 34.615 14.36 0.00 0.00 3.08
3771 4749 7.141363 AGGAAACACATTTTTCAAGAGATTCG 58.859 34.615 0.00 0.00 37.24 3.34
3778 4756 4.749245 TTTTCAAGAGATTCGGAACAGC 57.251 40.909 0.00 0.00 0.00 4.40
3801 4790 9.405587 CAGCCGATAATTCTTTTTGTTTTTCTA 57.594 29.630 0.00 0.00 0.00 2.10
3834 4823 6.708949 TCATCCGGCTAGTTTTATTGATTACC 59.291 38.462 0.00 0.00 0.00 2.85
3836 4825 6.053005 TCCGGCTAGTTTTATTGATTACCAG 58.947 40.000 0.00 0.00 0.00 4.00
3858 4847 9.696917 ACCAGAAATAGCTAAATTGTTCAAAAG 57.303 29.630 0.00 0.00 0.00 2.27
3859 4848 9.143631 CCAGAAATAGCTAAATTGTTCAAAAGG 57.856 33.333 0.00 0.00 0.00 3.11
3860 4849 9.912634 CAGAAATAGCTAAATTGTTCAAAAGGA 57.087 29.630 0.00 0.00 0.00 3.36
3863 4852 8.763049 AATAGCTAAATTGTTCAAAAGGAAGC 57.237 30.769 0.00 0.00 35.82 3.86
3864 4853 6.410942 AGCTAAATTGTTCAAAAGGAAGCT 57.589 33.333 0.00 0.00 35.82 3.74
3865 4854 7.524717 AGCTAAATTGTTCAAAAGGAAGCTA 57.475 32.000 0.00 0.00 35.82 3.32
3866 4855 7.597386 AGCTAAATTGTTCAAAAGGAAGCTAG 58.403 34.615 0.00 0.00 35.82 3.42
3867 4856 6.808704 GCTAAATTGTTCAAAAGGAAGCTAGG 59.191 38.462 0.00 0.00 35.82 3.02
3868 4857 5.728637 AATTGTTCAAAAGGAAGCTAGGG 57.271 39.130 0.00 0.00 35.82 3.53
3869 4858 3.154827 TGTTCAAAAGGAAGCTAGGGG 57.845 47.619 0.00 0.00 35.82 4.79
3870 4859 2.225017 TGTTCAAAAGGAAGCTAGGGGG 60.225 50.000 0.00 0.00 35.82 5.40
3871 4860 0.331616 TCAAAAGGAAGCTAGGGGGC 59.668 55.000 0.00 0.00 0.00 5.80
3872 4861 0.332972 CAAAAGGAAGCTAGGGGGCT 59.667 55.000 0.00 0.00 45.30 5.19
3873 4862 0.626382 AAAAGGAAGCTAGGGGGCTC 59.374 55.000 0.00 0.00 42.24 4.70
3874 4863 0.550147 AAAGGAAGCTAGGGGGCTCA 60.550 55.000 0.00 0.00 42.24 4.26
3875 4864 0.327964 AAGGAAGCTAGGGGGCTCAT 60.328 55.000 0.00 0.00 42.24 2.90
3876 4865 0.766288 AGGAAGCTAGGGGGCTCATC 60.766 60.000 0.00 0.00 42.24 2.92
3877 4866 1.369321 GAAGCTAGGGGGCTCATCG 59.631 63.158 0.00 0.00 42.24 3.84
3878 4867 1.075226 AAGCTAGGGGGCTCATCGA 60.075 57.895 0.00 0.00 42.24 3.59
3879 4868 1.403687 AAGCTAGGGGGCTCATCGAC 61.404 60.000 0.00 0.00 42.24 4.20
3880 4869 1.834822 GCTAGGGGGCTCATCGACT 60.835 63.158 0.00 0.00 0.00 4.18
3881 4870 1.811645 GCTAGGGGGCTCATCGACTC 61.812 65.000 0.00 0.00 0.00 3.36
3882 4871 0.468214 CTAGGGGGCTCATCGACTCA 60.468 60.000 0.00 0.00 0.00 3.41
3883 4872 0.032515 TAGGGGGCTCATCGACTCAA 60.033 55.000 0.00 0.00 0.00 3.02
3884 4873 1.144936 GGGGGCTCATCGACTCAAG 59.855 63.158 0.00 0.00 0.00 3.02
3885 4874 1.617947 GGGGGCTCATCGACTCAAGT 61.618 60.000 0.00 0.00 0.00 3.16
3886 4875 1.112113 GGGGCTCATCGACTCAAGTA 58.888 55.000 0.00 0.00 0.00 2.24
3887 4876 1.202428 GGGGCTCATCGACTCAAGTAC 60.202 57.143 0.00 0.00 0.00 2.73
3888 4877 1.476891 GGGCTCATCGACTCAAGTACA 59.523 52.381 0.00 0.00 0.00 2.90
3889 4878 2.094182 GGGCTCATCGACTCAAGTACAA 60.094 50.000 0.00 0.00 0.00 2.41
3890 4879 3.182967 GGCTCATCGACTCAAGTACAAG 58.817 50.000 0.00 0.00 0.00 3.16
3891 4880 3.367498 GGCTCATCGACTCAAGTACAAGT 60.367 47.826 0.00 0.00 0.00 3.16
3892 4881 4.238514 GCTCATCGACTCAAGTACAAGTT 58.761 43.478 0.00 0.00 0.00 2.66
3893 4882 4.686554 GCTCATCGACTCAAGTACAAGTTT 59.313 41.667 0.00 0.00 0.00 2.66
3894 4883 5.164041 GCTCATCGACTCAAGTACAAGTTTC 60.164 44.000 0.00 0.00 0.00 2.78
3895 4884 5.838529 TCATCGACTCAAGTACAAGTTTCA 58.161 37.500 0.00 0.00 0.00 2.69
3896 4885 6.455647 TCATCGACTCAAGTACAAGTTTCAT 58.544 36.000 0.00 0.00 0.00 2.57
3897 4886 6.366061 TCATCGACTCAAGTACAAGTTTCATG 59.634 38.462 0.00 0.00 0.00 3.07
3898 4887 4.988540 TCGACTCAAGTACAAGTTTCATGG 59.011 41.667 0.00 0.00 0.00 3.66
3899 4888 4.988540 CGACTCAAGTACAAGTTTCATGGA 59.011 41.667 0.00 0.00 0.00 3.41
3900 4889 5.119279 CGACTCAAGTACAAGTTTCATGGAG 59.881 44.000 0.00 0.00 0.00 3.86
3901 4890 6.174720 ACTCAAGTACAAGTTTCATGGAGA 57.825 37.500 0.00 0.00 0.00 3.71
3902 4891 6.226787 ACTCAAGTACAAGTTTCATGGAGAG 58.773 40.000 0.00 0.00 0.00 3.20
3903 4892 6.174720 TCAAGTACAAGTTTCATGGAGAGT 57.825 37.500 0.00 0.00 0.00 3.24
3904 4893 5.991606 TCAAGTACAAGTTTCATGGAGAGTG 59.008 40.000 0.00 0.00 0.00 3.51
3905 4894 5.552870 AGTACAAGTTTCATGGAGAGTGT 57.447 39.130 0.00 0.00 0.00 3.55
3906 4895 5.930135 AGTACAAGTTTCATGGAGAGTGTT 58.070 37.500 0.00 0.00 0.00 3.32
3907 4896 7.062749 AGTACAAGTTTCATGGAGAGTGTTA 57.937 36.000 0.00 0.00 0.00 2.41
3908 4897 7.506114 AGTACAAGTTTCATGGAGAGTGTTAA 58.494 34.615 0.00 0.00 0.00 2.01
3909 4898 6.867662 ACAAGTTTCATGGAGAGTGTTAAG 57.132 37.500 0.00 0.00 0.00 1.85
3910 4899 5.765182 ACAAGTTTCATGGAGAGTGTTAAGG 59.235 40.000 0.00 0.00 0.00 2.69
3911 4900 4.911390 AGTTTCATGGAGAGTGTTAAGGG 58.089 43.478 0.00 0.00 0.00 3.95
3912 4901 3.350219 TTCATGGAGAGTGTTAAGGGC 57.650 47.619 0.00 0.00 0.00 5.19
3913 4902 2.265367 TCATGGAGAGTGTTAAGGGCA 58.735 47.619 0.00 0.00 0.00 5.36
3914 4903 2.846206 TCATGGAGAGTGTTAAGGGCAT 59.154 45.455 0.00 0.00 0.00 4.40
3915 4904 3.266772 TCATGGAGAGTGTTAAGGGCATT 59.733 43.478 0.00 0.00 0.00 3.56
3916 4905 3.806949 TGGAGAGTGTTAAGGGCATTT 57.193 42.857 0.00 0.00 0.00 2.32
3917 4906 3.686016 TGGAGAGTGTTAAGGGCATTTC 58.314 45.455 0.00 0.00 0.00 2.17
3918 4907 3.330701 TGGAGAGTGTTAAGGGCATTTCT 59.669 43.478 0.00 0.00 0.00 2.52
3919 4908 4.534500 TGGAGAGTGTTAAGGGCATTTCTA 59.466 41.667 0.00 0.00 0.00 2.10
3920 4909 5.013704 TGGAGAGTGTTAAGGGCATTTCTAA 59.986 40.000 0.00 0.00 0.00 2.10
3921 4910 5.354513 GGAGAGTGTTAAGGGCATTTCTAAC 59.645 44.000 0.00 0.00 0.00 2.34
3922 4911 5.254115 AGAGTGTTAAGGGCATTTCTAACC 58.746 41.667 0.00 0.00 0.00 2.85
3923 4912 4.993028 AGTGTTAAGGGCATTTCTAACCA 58.007 39.130 0.00 0.00 0.00 3.67
3924 4913 5.390387 AGTGTTAAGGGCATTTCTAACCAA 58.610 37.500 0.00 0.00 0.00 3.67
3925 4914 5.243060 AGTGTTAAGGGCATTTCTAACCAAC 59.757 40.000 0.00 0.00 0.00 3.77
3926 4915 4.525100 TGTTAAGGGCATTTCTAACCAACC 59.475 41.667 0.00 0.00 0.00 3.77
3927 4916 2.231716 AGGGCATTTCTAACCAACCC 57.768 50.000 0.00 0.00 36.04 4.11
3928 4917 1.191535 GGGCATTTCTAACCAACCCC 58.808 55.000 0.00 0.00 0.00 4.95
3929 4918 1.191535 GGCATTTCTAACCAACCCCC 58.808 55.000 0.00 0.00 0.00 5.40
3930 4919 1.551329 GGCATTTCTAACCAACCCCCA 60.551 52.381 0.00 0.00 0.00 4.96
3931 4920 2.252714 GCATTTCTAACCAACCCCCAA 58.747 47.619 0.00 0.00 0.00 4.12
3932 4921 2.837591 GCATTTCTAACCAACCCCCAAT 59.162 45.455 0.00 0.00 0.00 3.16
3933 4922 4.027437 GCATTTCTAACCAACCCCCAATA 58.973 43.478 0.00 0.00 0.00 1.90
3934 4923 4.142026 GCATTTCTAACCAACCCCCAATAC 60.142 45.833 0.00 0.00 0.00 1.89
3935 4924 3.353370 TTCTAACCAACCCCCAATACG 57.647 47.619 0.00 0.00 0.00 3.06
3936 4925 1.560611 TCTAACCAACCCCCAATACGG 59.439 52.381 0.00 0.00 0.00 4.02
3937 4926 0.034283 TAACCAACCCCCAATACGGC 60.034 55.000 0.00 0.00 0.00 5.68
3938 4927 2.441348 CCAACCCCCAATACGGCC 60.441 66.667 0.00 0.00 0.00 6.13
3939 4928 2.357056 CAACCCCCAATACGGCCA 59.643 61.111 2.24 0.00 0.00 5.36
3940 4929 1.076339 CAACCCCCAATACGGCCAT 60.076 57.895 2.24 0.00 0.00 4.40
3941 4930 0.183971 CAACCCCCAATACGGCCATA 59.816 55.000 2.24 0.00 0.00 2.74
3942 4931 0.927767 AACCCCCAATACGGCCATAA 59.072 50.000 2.24 0.00 0.00 1.90
3943 4932 0.476771 ACCCCCAATACGGCCATAAG 59.523 55.000 2.24 0.00 0.00 1.73
3944 4933 0.251165 CCCCCAATACGGCCATAAGG 60.251 60.000 2.24 0.00 38.23 2.69
3945 4934 0.251165 CCCCAATACGGCCATAAGGG 60.251 60.000 11.69 11.69 40.85 3.95
3946 4935 0.768622 CCCAATACGGCCATAAGGGA 59.231 55.000 13.02 0.00 40.01 4.20
3947 4936 1.271379 CCCAATACGGCCATAAGGGAG 60.271 57.143 13.02 0.00 40.01 4.30
3948 4937 1.420138 CCAATACGGCCATAAGGGAGT 59.580 52.381 2.24 0.00 40.01 3.85
3949 4938 2.635915 CCAATACGGCCATAAGGGAGTA 59.364 50.000 2.24 0.00 40.01 2.59
3950 4939 3.071892 CCAATACGGCCATAAGGGAGTAA 59.928 47.826 2.24 0.00 40.01 2.24
3951 4940 4.445162 CCAATACGGCCATAAGGGAGTAAA 60.445 45.833 2.24 0.00 40.01 2.01
3952 4941 5.127491 CAATACGGCCATAAGGGAGTAAAA 58.873 41.667 2.24 0.00 40.01 1.52
3953 4942 3.724732 ACGGCCATAAGGGAGTAAAAA 57.275 42.857 2.24 0.00 40.01 1.94
3954 4943 4.245251 ACGGCCATAAGGGAGTAAAAAT 57.755 40.909 2.24 0.00 40.01 1.82
3955 4944 4.606210 ACGGCCATAAGGGAGTAAAAATT 58.394 39.130 2.24 0.00 40.01 1.82
3956 4945 5.020795 ACGGCCATAAGGGAGTAAAAATTT 58.979 37.500 2.24 0.00 40.01 1.82
3957 4946 5.126545 ACGGCCATAAGGGAGTAAAAATTTC 59.873 40.000 2.24 0.00 40.01 2.17
3958 4947 5.126384 CGGCCATAAGGGAGTAAAAATTTCA 59.874 40.000 2.24 0.00 40.01 2.69
3959 4948 6.573434 GGCCATAAGGGAGTAAAAATTTCAG 58.427 40.000 0.00 0.00 40.01 3.02
3960 4949 6.154534 GGCCATAAGGGAGTAAAAATTTCAGT 59.845 38.462 0.00 0.00 40.01 3.41
3961 4950 7.310423 GGCCATAAGGGAGTAAAAATTTCAGTT 60.310 37.037 0.00 0.00 40.01 3.16
3962 4951 8.094548 GCCATAAGGGAGTAAAAATTTCAGTTT 58.905 33.333 0.00 0.00 40.01 2.66
3975 4964 5.874895 ATTTCAGTTTACTCCTTTACGGC 57.125 39.130 0.00 0.00 0.00 5.68
3976 4965 2.950433 TCAGTTTACTCCTTTACGGCG 58.050 47.619 4.80 4.80 0.00 6.46
3977 4966 1.997606 CAGTTTACTCCTTTACGGCGG 59.002 52.381 13.24 0.00 0.00 6.13
3978 4967 1.895131 AGTTTACTCCTTTACGGCGGA 59.105 47.619 13.24 0.00 0.00 5.54
3979 4968 1.995484 GTTTACTCCTTTACGGCGGAC 59.005 52.381 13.24 0.00 0.00 4.79
3980 4969 0.532115 TTACTCCTTTACGGCGGACC 59.468 55.000 13.24 0.00 0.00 4.46
3981 4970 0.323725 TACTCCTTTACGGCGGACCT 60.324 55.000 13.24 0.00 0.00 3.85
3982 4971 0.323725 ACTCCTTTACGGCGGACCTA 60.324 55.000 13.24 0.00 0.00 3.08
3983 4972 0.384669 CTCCTTTACGGCGGACCTAG 59.615 60.000 13.24 0.00 0.00 3.02
3984 4973 1.227176 CCTTTACGGCGGACCTAGC 60.227 63.158 13.24 0.00 0.00 3.42
3993 4982 2.201771 GGACCTAGCCGATCCCCT 59.798 66.667 0.00 0.00 0.00 4.79
3994 4983 1.463824 GGACCTAGCCGATCCCCTA 59.536 63.158 0.00 0.00 0.00 3.53
3995 4984 0.178941 GGACCTAGCCGATCCCCTAA 60.179 60.000 0.00 0.00 0.00 2.69
3996 4985 1.713297 GACCTAGCCGATCCCCTAAA 58.287 55.000 0.00 0.00 0.00 1.85
3997 4986 2.044758 GACCTAGCCGATCCCCTAAAA 58.955 52.381 0.00 0.00 0.00 1.52
3998 4987 2.436911 GACCTAGCCGATCCCCTAAAAA 59.563 50.000 0.00 0.00 0.00 1.94
3999 4988 3.053826 ACCTAGCCGATCCCCTAAAAAT 58.946 45.455 0.00 0.00 0.00 1.82
4000 4989 3.181443 ACCTAGCCGATCCCCTAAAAATG 60.181 47.826 0.00 0.00 0.00 2.32
4001 4990 1.692411 AGCCGATCCCCTAAAAATGC 58.308 50.000 0.00 0.00 0.00 3.56
4002 4991 1.215423 AGCCGATCCCCTAAAAATGCT 59.785 47.619 0.00 0.00 0.00 3.79
4003 4992 2.441750 AGCCGATCCCCTAAAAATGCTA 59.558 45.455 0.00 0.00 0.00 3.49
4004 4993 3.117663 AGCCGATCCCCTAAAAATGCTAA 60.118 43.478 0.00 0.00 0.00 3.09
4005 4994 3.004419 GCCGATCCCCTAAAAATGCTAAC 59.996 47.826 0.00 0.00 0.00 2.34
4006 4995 3.250040 CCGATCCCCTAAAAATGCTAACG 59.750 47.826 0.00 0.00 0.00 3.18
4007 4996 4.124238 CGATCCCCTAAAAATGCTAACGA 58.876 43.478 0.00 0.00 0.00 3.85
4008 4997 4.573201 CGATCCCCTAAAAATGCTAACGAA 59.427 41.667 0.00 0.00 0.00 3.85
4009 4998 5.277345 CGATCCCCTAAAAATGCTAACGAAG 60.277 44.000 0.00 0.00 0.00 3.79
4011 5000 6.052405 TCCCCTAAAAATGCTAACGAAGTA 57.948 37.500 0.00 0.00 45.00 2.24
4012 5001 6.655930 TCCCCTAAAAATGCTAACGAAGTAT 58.344 36.000 0.00 0.00 45.00 2.12
4013 5002 7.794041 TCCCCTAAAAATGCTAACGAAGTATA 58.206 34.615 0.00 0.00 45.00 1.47
4014 5003 8.266473 TCCCCTAAAAATGCTAACGAAGTATAA 58.734 33.333 0.00 0.00 45.00 0.98
4015 5004 9.063615 CCCCTAAAAATGCTAACGAAGTATAAT 57.936 33.333 0.00 0.00 45.00 1.28
4025 5014 9.656040 TGCTAACGAAGTATAATTTTTACTCCA 57.344 29.630 0.00 0.00 45.00 3.86
4030 5019 9.159364 ACGAAGTATAATTTTTACTCCAACTCC 57.841 33.333 0.00 0.00 41.94 3.85
4031 5020 8.610035 CGAAGTATAATTTTTACTCCAACTCCC 58.390 37.037 0.81 0.00 0.00 4.30
4032 5021 9.682465 GAAGTATAATTTTTACTCCAACTCCCT 57.318 33.333 0.81 0.00 0.00 4.20
4037 5026 7.956328 AATTTTTACTCCAACTCCCTATTCC 57.044 36.000 0.00 0.00 0.00 3.01
4038 5027 5.446260 TTTTACTCCAACTCCCTATTCCC 57.554 43.478 0.00 0.00 0.00 3.97
4039 5028 1.894699 ACTCCAACTCCCTATTCCCC 58.105 55.000 0.00 0.00 0.00 4.81
4040 5029 1.141185 CTCCAACTCCCTATTCCCCC 58.859 60.000 0.00 0.00 0.00 5.40
4062 5051 8.637196 CCCCCAAGATTTTCCTAAATATACTC 57.363 38.462 0.00 0.00 34.16 2.59
4063 5052 7.670140 CCCCCAAGATTTTCCTAAATATACTCC 59.330 40.741 0.00 0.00 34.16 3.85
4064 5053 8.224720 CCCCAAGATTTTCCTAAATATACTCCA 58.775 37.037 0.00 0.00 34.16 3.86
4065 5054 9.813826 CCCAAGATTTTCCTAAATATACTCCAT 57.186 33.333 0.00 0.00 34.16 3.41
4069 5058 9.712305 AGATTTTCCTAAATATACTCCATCGTG 57.288 33.333 0.00 0.00 34.16 4.35
4070 5059 9.490379 GATTTTCCTAAATATACTCCATCGTGT 57.510 33.333 0.00 0.00 34.16 4.49
4071 5060 8.657074 TTTTCCTAAATATACTCCATCGTGTG 57.343 34.615 0.00 0.00 0.00 3.82
4079 5068 4.758251 CCATCGTGTGGCAGCCGA 62.758 66.667 7.03 10.38 42.12 5.54
4080 5069 3.190849 CATCGTGTGGCAGCCGAG 61.191 66.667 7.03 0.00 33.66 4.63
4081 5070 3.695606 ATCGTGTGGCAGCCGAGT 61.696 61.111 7.03 1.31 33.66 4.18
4082 5071 2.348104 ATCGTGTGGCAGCCGAGTA 61.348 57.895 7.03 0.00 33.66 2.59
4083 5072 1.884075 ATCGTGTGGCAGCCGAGTAA 61.884 55.000 7.03 0.00 33.66 2.24
4084 5073 1.666553 CGTGTGGCAGCCGAGTAAA 60.667 57.895 7.03 0.00 0.00 2.01
4085 5074 1.225376 CGTGTGGCAGCCGAGTAAAA 61.225 55.000 7.03 0.00 0.00 1.52
4086 5075 0.237498 GTGTGGCAGCCGAGTAAAAC 59.763 55.000 7.03 0.00 0.00 2.43
4087 5076 0.107831 TGTGGCAGCCGAGTAAAACT 59.892 50.000 7.03 0.00 0.00 2.66
4088 5077 0.796927 GTGGCAGCCGAGTAAAACTC 59.203 55.000 7.03 0.00 41.71 3.01
4089 5078 0.321298 TGGCAGCCGAGTAAAACTCC 60.321 55.000 7.03 0.00 42.12 3.85
4090 5079 1.025113 GGCAGCCGAGTAAAACTCCC 61.025 60.000 0.00 0.00 42.12 4.30
4091 5080 0.036294 GCAGCCGAGTAAAACTCCCT 60.036 55.000 1.63 0.00 42.12 4.20
4092 5081 2.007547 GCAGCCGAGTAAAACTCCCTC 61.008 57.143 1.63 0.00 42.12 4.30
4093 5082 1.550976 CAGCCGAGTAAAACTCCCTCT 59.449 52.381 1.63 0.00 42.12 3.69
4094 5083 1.826096 AGCCGAGTAAAACTCCCTCTC 59.174 52.381 1.63 0.00 42.12 3.20
4095 5084 1.469423 GCCGAGTAAAACTCCCTCTCG 60.469 57.143 0.00 0.00 42.12 4.04
4096 5085 1.469423 CCGAGTAAAACTCCCTCTCGC 60.469 57.143 7.26 0.00 42.12 5.03
4097 5086 1.469423 CGAGTAAAACTCCCTCTCGCC 60.469 57.143 1.63 0.00 42.12 5.54
4098 5087 0.903236 AGTAAAACTCCCTCTCGCCC 59.097 55.000 0.00 0.00 0.00 6.13
4099 5088 0.903236 GTAAAACTCCCTCTCGCCCT 59.097 55.000 0.00 0.00 0.00 5.19
4100 5089 1.134759 GTAAAACTCCCTCTCGCCCTC 60.135 57.143 0.00 0.00 0.00 4.30
4101 5090 1.554583 AAAACTCCCTCTCGCCCTCC 61.555 60.000 0.00 0.00 0.00 4.30
4102 5091 3.986116 AACTCCCTCTCGCCCTCCC 62.986 68.421 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
532 569 2.680352 TCTCGACCTGGGTGAGCC 60.680 66.667 11.36 0.00 0.00 4.70
705 747 3.057526 GGATTGGACCTTGTACTTGCAAC 60.058 47.826 0.00 0.00 0.00 4.17
712 754 2.084546 GCTGTGGATTGGACCTTGTAC 58.915 52.381 0.00 0.00 0.00 2.90
732 774 8.968969 GGTACTAGTATATTGATAGGAGTTGGG 58.031 40.741 5.75 0.00 0.00 4.12
739 781 9.392259 TGACGATGGTACTAGTATATTGATAGG 57.608 37.037 17.62 3.14 0.00 2.57
741 783 9.729281 TGTGACGATGGTACTAGTATATTGATA 57.271 33.333 17.62 8.19 0.00 2.15
743 785 8.512138 CATGTGACGATGGTACTAGTATATTGA 58.488 37.037 17.62 3.39 0.00 2.57
744 786 7.273598 GCATGTGACGATGGTACTAGTATATTG 59.726 40.741 5.75 10.08 0.00 1.90
745 787 7.313646 GCATGTGACGATGGTACTAGTATATT 58.686 38.462 5.75 0.00 0.00 1.28
746 788 6.127703 GGCATGTGACGATGGTACTAGTATAT 60.128 42.308 5.75 4.21 0.00 0.86
747 789 5.182570 GGCATGTGACGATGGTACTAGTATA 59.817 44.000 5.75 0.00 0.00 1.47
748 790 4.022242 GGCATGTGACGATGGTACTAGTAT 60.022 45.833 5.75 0.00 0.00 2.12
749 791 3.317149 GGCATGTGACGATGGTACTAGTA 59.683 47.826 0.00 0.00 0.00 1.82
762 804 0.870393 CGGATAGCATGGCATGTGAC 59.130 55.000 26.94 15.83 0.00 3.67
858 900 9.567776 TTGGACAACTGTAGAAATTAAATGAGA 57.432 29.630 0.00 0.00 0.00 3.27
859 901 9.612620 GTTGGACAACTGTAGAAATTAAATGAG 57.387 33.333 7.88 0.00 38.25 2.90
860 902 9.126151 TGTTGGACAACTGTAGAAATTAAATGA 57.874 29.630 15.37 0.00 41.67 2.57
861 903 9.743057 TTGTTGGACAACTGTAGAAATTAAATG 57.257 29.630 15.37 0.00 41.67 2.32
863 905 9.796120 CTTTGTTGGACAACTGTAGAAATTAAA 57.204 29.630 15.37 4.03 37.90 1.52
865 907 7.469456 GCCTTTGTTGGACAACTGTAGAAATTA 60.469 37.037 15.37 0.00 37.90 1.40
866 908 6.682861 GCCTTTGTTGGACAACTGTAGAAATT 60.683 38.462 15.37 0.00 37.90 1.82
867 909 5.221244 GCCTTTGTTGGACAACTGTAGAAAT 60.221 40.000 15.37 0.00 37.90 2.17
885 930 4.706476 TCATCTTCCAGGTTATTGCCTTTG 59.294 41.667 0.00 0.00 36.58 2.77
891 936 4.038402 GGCCAATCATCTTCCAGGTTATTG 59.962 45.833 0.00 0.00 0.00 1.90
948 993 2.670414 GAGGTCATTCGCTTTCAGTCTG 59.330 50.000 0.00 0.00 0.00 3.51
952 997 2.005451 CAGGAGGTCATTCGCTTTCAG 58.995 52.381 0.00 0.00 0.00 3.02
1020 1065 2.535984 CGTCTCGAAGCGCTTGAAATAT 59.464 45.455 30.47 0.00 0.00 1.28
1092 1137 0.108138 GGCGCTGGTAGTCATTCAGT 60.108 55.000 7.64 0.00 0.00 3.41
1200 1245 5.877012 CCAGAGTTGTGCTAATACAGTTGAT 59.123 40.000 0.00 0.00 0.00 2.57
1301 1346 6.360370 ACACACTCCAATATACAGAACAGT 57.640 37.500 0.00 0.00 0.00 3.55
1330 1375 6.512903 GCCAGTTTCTAGGTTGACAAGTTAAC 60.513 42.308 0.00 0.00 0.00 2.01
1364 1410 9.722056 GGTTCACATCACACTATATTTGAATTC 57.278 33.333 0.00 0.00 0.00 2.17
1381 1427 0.802494 ACATTTCGGCGGTTCACATC 59.198 50.000 7.21 0.00 0.00 3.06
1382 1428 0.802494 GACATTTCGGCGGTTCACAT 59.198 50.000 7.21 0.00 0.00 3.21
1383 1429 0.250124 AGACATTTCGGCGGTTCACA 60.250 50.000 7.21 0.00 0.00 3.58
1384 1430 0.872388 AAGACATTTCGGCGGTTCAC 59.128 50.000 7.21 0.00 0.00 3.18
1428 1474 1.000506 GTCTACCAGTGAGCCGTTTCA 59.999 52.381 0.00 0.00 0.00 2.69
1566 1613 7.899973 AGGTAGTATTTTAACGGAAGACTTCA 58.100 34.615 16.85 0.00 31.64 3.02
1569 1616 6.438425 TGGAGGTAGTATTTTAACGGAAGACT 59.562 38.462 0.00 0.00 33.56 3.24
1586 1633 7.569240 AGACAAGAATTTTAGGATGGAGGTAG 58.431 38.462 0.00 0.00 0.00 3.18
1587 1634 7.510675 AGACAAGAATTTTAGGATGGAGGTA 57.489 36.000 0.00 0.00 0.00 3.08
1588 1635 6.394345 AGACAAGAATTTTAGGATGGAGGT 57.606 37.500 0.00 0.00 0.00 3.85
1589 1636 8.267894 TCTAAGACAAGAATTTTAGGATGGAGG 58.732 37.037 0.00 0.00 0.00 4.30
1599 1646 8.579863 CCACTCCAAATCTAAGACAAGAATTTT 58.420 33.333 0.00 0.00 0.00 1.82
1601 1648 7.234355 ACCACTCCAAATCTAAGACAAGAATT 58.766 34.615 0.00 0.00 0.00 2.17
1602 1649 6.784031 ACCACTCCAAATCTAAGACAAGAAT 58.216 36.000 0.00 0.00 0.00 2.40
1603 1650 6.187727 ACCACTCCAAATCTAAGACAAGAA 57.812 37.500 0.00 0.00 0.00 2.52
1605 1652 5.765182 ACAACCACTCCAAATCTAAGACAAG 59.235 40.000 0.00 0.00 0.00 3.16
1607 1654 5.304686 ACAACCACTCCAAATCTAAGACA 57.695 39.130 0.00 0.00 0.00 3.41
1608 1655 6.635030 AAACAACCACTCCAAATCTAAGAC 57.365 37.500 0.00 0.00 0.00 3.01
1610 1657 6.715264 ACCTAAACAACCACTCCAAATCTAAG 59.285 38.462 0.00 0.00 0.00 2.18
1612 1659 6.195600 ACCTAAACAACCACTCCAAATCTA 57.804 37.500 0.00 0.00 0.00 1.98
1613 1660 5.061721 ACCTAAACAACCACTCCAAATCT 57.938 39.130 0.00 0.00 0.00 2.40
1614 1661 5.784578 AACCTAAACAACCACTCCAAATC 57.215 39.130 0.00 0.00 0.00 2.17
1615 1662 6.780522 ACATAACCTAAACAACCACTCCAAAT 59.219 34.615 0.00 0.00 0.00 2.32
1616 1663 6.130569 ACATAACCTAAACAACCACTCCAAA 58.869 36.000 0.00 0.00 0.00 3.28
1617 1664 5.697067 ACATAACCTAAACAACCACTCCAA 58.303 37.500 0.00 0.00 0.00 3.53
1618 1665 5.313280 ACATAACCTAAACAACCACTCCA 57.687 39.130 0.00 0.00 0.00 3.86
1619 1666 7.627726 GCAATACATAACCTAAACAACCACTCC 60.628 40.741 0.00 0.00 0.00 3.85
1700 1747 2.838202 ACTCACTACCACCCTACATTGG 59.162 50.000 0.00 0.00 39.00 3.16
1716 1763 4.400884 ACTCACTCCATCTGATGTACTCAC 59.599 45.833 15.95 0.00 0.00 3.51
1728 1775 5.189659 GTACTCATGGTACTCACTCCATC 57.810 47.826 13.93 0.00 45.25 3.51
1872 1926 9.136323 AGAGAAAAATAATGGTTATTAGCCCAG 57.864 33.333 0.00 0.00 34.88 4.45
1881 1935 7.232534 ACTGTTGCCAGAGAAAAATAATGGTTA 59.767 33.333 0.00 0.00 41.50 2.85
1922 1976 3.297134 AGATGGCCGGTCAAAATGTAT 57.703 42.857 15.45 0.00 0.00 2.29
2021 2079 6.870965 AGAGATGAAGTCATACTGAACAACAC 59.129 38.462 0.00 0.00 36.57 3.32
2134 2192 3.413105 ACTAAAGCCTGAGAGGGATCT 57.587 47.619 0.00 0.00 35.37 2.75
2183 2245 7.309073 GGGAGTACATAATAGCCAGTAGTACAC 60.309 44.444 2.52 0.00 34.41 2.90
2199 2261 2.832643 TGGAACGGAGGGAGTACATA 57.167 50.000 0.00 0.00 0.00 2.29
2205 2267 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2250 2312 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
2251 2313 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
2252 2314 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
2253 2315 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
2254 2316 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2260 2322 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2262 2324 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2263 2325 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2264 2326 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2265 2327 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2266 2328 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2267 2329 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2273 2412 4.194678 AGATATTACTCCCTCCGTTCCA 57.805 45.455 0.00 0.00 0.00 3.53
2301 2440 4.278170 ACATTCCTGAATTGAAAGAACGCA 59.722 37.500 0.00 0.00 0.00 5.24
2462 3376 6.801862 GGATGTACAGTGTTGATAAAACAAGC 59.198 38.462 0.00 0.00 31.20 4.01
2563 3477 4.035792 TGTTGATGTAACGGAAACCTGTTG 59.964 41.667 0.00 0.00 42.34 3.33
2580 3494 3.627577 GGCACGTTCCATTCTATGTTGAT 59.372 43.478 0.00 0.00 0.00 2.57
2598 3512 1.815003 CTTCATCAAACTCCAGGGCAC 59.185 52.381 0.00 0.00 0.00 5.01
2654 3569 8.834465 AGTAACAGCAGCAAATTATCTATGAAG 58.166 33.333 0.00 0.00 0.00 3.02
2794 3733 3.290710 GGATTCCACTTGCATACCACAT 58.709 45.455 0.00 0.00 0.00 3.21
2800 3739 4.248174 TCCAATGGATTCCACTTGCATA 57.752 40.909 7.76 1.09 35.80 3.14
2846 3785 3.347077 CTGAAAGGAAGGCAGACAGAT 57.653 47.619 0.00 0.00 0.00 2.90
2931 3874 5.009854 TGATACAGAAGTGATCGCATGAA 57.990 39.130 9.33 0.00 0.00 2.57
2932 3875 4.654091 TGATACAGAAGTGATCGCATGA 57.346 40.909 9.33 0.00 0.00 3.07
2979 3922 8.711457 AGGAAATTAATTTCACTTCGCAAATTG 58.289 29.630 31.78 0.00 46.03 2.32
2990 3933 9.868389 CAAGCTGAAAAAGGAAATTAATTTCAC 57.132 29.630 31.78 23.45 46.03 3.18
3003 3946 4.346129 GCGTATCATCAAGCTGAAAAAGG 58.654 43.478 0.00 0.00 0.00 3.11
3093 4036 7.918536 TTCTTGAGAATCTTCAATCCTCTTG 57.081 36.000 0.00 0.00 36.55 3.02
3194 4160 9.638239 TTTCGCTTAGCAAATTATCTTTCAAAT 57.362 25.926 4.70 0.00 0.00 2.32
3274 4247 4.331968 TCGGGCAATGTGTATCTTCTTTT 58.668 39.130 0.00 0.00 0.00 2.27
3324 4297 5.588246 TCACAATCTTAACACTGTTGCTTCA 59.412 36.000 4.57 0.00 0.00 3.02
3325 4298 6.060028 TCACAATCTTAACACTGTTGCTTC 57.940 37.500 4.57 0.00 0.00 3.86
3343 4316 8.514594 GTTTGACCATTATCTCATTCTTCACAA 58.485 33.333 0.00 0.00 0.00 3.33
3345 4318 8.044060 TGTTTGACCATTATCTCATTCTTCAC 57.956 34.615 0.00 0.00 0.00 3.18
3362 4335 5.167845 ACAACAATCAACACTTGTTTGACC 58.832 37.500 11.10 0.00 42.58 4.02
3363 4336 5.861251 TGACAACAATCAACACTTGTTTGAC 59.139 36.000 11.10 0.00 42.58 3.18
3368 4341 6.455360 AATCTGACAACAATCAACACTTGT 57.545 33.333 0.00 0.00 38.44 3.16
3405 4378 2.509964 GGAAGTAGGGGTCACCATTGAT 59.490 50.000 0.00 0.00 43.89 2.57
3415 4388 4.079385 ACTTGAAAACTTGGAAGTAGGGGT 60.079 41.667 0.00 0.00 38.57 4.95
3420 4393 4.573201 CGACCACTTGAAAACTTGGAAGTA 59.427 41.667 0.00 0.00 38.57 2.24
3519 4492 5.190925 TGCTTGTACACCCCTTGATAATACT 59.809 40.000 0.00 0.00 0.00 2.12
3547 4520 8.527567 TTGTTTTAGAGTTCAAACCAAAGTTG 57.472 30.769 0.00 0.00 35.97 3.16
3568 4541 9.480053 CTGAACAATTTGGTTTATGATCTTGTT 57.520 29.630 0.78 0.00 38.04 2.83
3632 4610 7.548967 AGACCGAAAGTTCAAACCAATTTAAA 58.451 30.769 0.00 0.00 0.00 1.52
3635 4613 5.451381 GGAGACCGAAAGTTCAAACCAATTT 60.451 40.000 0.00 0.00 0.00 1.82
3653 4631 6.070481 AGAGTTAAATTCTCAGAAGGGAGACC 60.070 42.308 0.00 0.00 43.31 3.85
3658 4636 6.706295 ACAGAGAGTTAAATTCTCAGAAGGG 58.294 40.000 16.40 5.46 42.79 3.95
3690 4668 3.249320 GTGAAACTCGGAGGTACCAAAAC 59.751 47.826 15.94 2.31 38.90 2.43
3694 4672 0.971386 GGTGAAACTCGGAGGTACCA 59.029 55.000 15.94 2.02 36.01 3.25
3696 4674 0.971386 TGGGTGAAACTCGGAGGTAC 59.029 55.000 10.23 0.00 43.75 3.34
3697 4675 1.719529 TTGGGTGAAACTCGGAGGTA 58.280 50.000 10.23 0.00 43.75 3.08
3698 4676 0.841289 TTTGGGTGAAACTCGGAGGT 59.159 50.000 10.23 0.00 43.75 3.85
3700 4678 0.875059 GCTTTGGGTGAAACTCGGAG 59.125 55.000 2.83 2.83 43.75 4.63
3701 4679 0.536460 GGCTTTGGGTGAAACTCGGA 60.536 55.000 0.00 0.00 43.75 4.55
3771 4749 5.709966 ACAAAAAGAATTATCGGCTGTTCC 58.290 37.500 0.00 0.00 0.00 3.62
3778 4756 9.353999 CCCTAGAAAAACAAAAAGAATTATCGG 57.646 33.333 0.00 0.00 0.00 4.18
3801 4790 2.664835 CTAGCCGGATGACTCCCCCT 62.665 65.000 5.05 0.00 38.45 4.79
3834 4823 9.912634 TCCTTTTGAACAATTTAGCTATTTCTG 57.087 29.630 0.00 0.00 0.00 3.02
3850 4839 2.447443 CCCCCTAGCTTCCTTTTGAAC 58.553 52.381 0.00 0.00 0.00 3.18
3851 4840 1.272480 GCCCCCTAGCTTCCTTTTGAA 60.272 52.381 0.00 0.00 0.00 2.69
3852 4841 0.331616 GCCCCCTAGCTTCCTTTTGA 59.668 55.000 0.00 0.00 0.00 2.69
3853 4842 0.332972 AGCCCCCTAGCTTCCTTTTG 59.667 55.000 0.00 0.00 41.41 2.44
3854 4843 0.626382 GAGCCCCCTAGCTTCCTTTT 59.374 55.000 0.00 0.00 45.15 2.27
3855 4844 0.550147 TGAGCCCCCTAGCTTCCTTT 60.550 55.000 0.00 0.00 45.15 3.11
3856 4845 0.327964 ATGAGCCCCCTAGCTTCCTT 60.328 55.000 0.00 0.00 45.15 3.36
3857 4846 0.766288 GATGAGCCCCCTAGCTTCCT 60.766 60.000 0.00 0.00 45.15 3.36
3858 4847 1.757949 GATGAGCCCCCTAGCTTCC 59.242 63.158 0.00 0.00 45.15 3.46
3859 4848 1.115930 TCGATGAGCCCCCTAGCTTC 61.116 60.000 0.00 0.00 45.15 3.86
3860 4849 1.075226 TCGATGAGCCCCCTAGCTT 60.075 57.895 0.00 0.00 45.15 3.74
3862 4851 1.811645 GAGTCGATGAGCCCCCTAGC 61.812 65.000 0.00 0.00 0.00 3.42
3863 4852 0.468214 TGAGTCGATGAGCCCCCTAG 60.468 60.000 0.00 0.00 0.00 3.02
3864 4853 0.032515 TTGAGTCGATGAGCCCCCTA 60.033 55.000 0.00 0.00 0.00 3.53
3865 4854 1.306141 TTGAGTCGATGAGCCCCCT 60.306 57.895 0.00 0.00 0.00 4.79
3866 4855 1.144936 CTTGAGTCGATGAGCCCCC 59.855 63.158 0.00 0.00 0.00 5.40
3867 4856 1.112113 TACTTGAGTCGATGAGCCCC 58.888 55.000 0.00 0.00 0.00 5.80
3868 4857 1.476891 TGTACTTGAGTCGATGAGCCC 59.523 52.381 0.00 0.00 0.00 5.19
3869 4858 2.941453 TGTACTTGAGTCGATGAGCC 57.059 50.000 0.00 0.00 0.00 4.70
3870 4859 3.839293 ACTTGTACTTGAGTCGATGAGC 58.161 45.455 0.00 0.00 0.00 4.26
3871 4860 5.920840 TGAAACTTGTACTTGAGTCGATGAG 59.079 40.000 0.00 0.00 0.00 2.90
3872 4861 5.838529 TGAAACTTGTACTTGAGTCGATGA 58.161 37.500 0.00 0.00 0.00 2.92
3873 4862 6.401474 CCATGAAACTTGTACTTGAGTCGATG 60.401 42.308 0.00 0.70 0.00 3.84
3874 4863 5.639506 CCATGAAACTTGTACTTGAGTCGAT 59.360 40.000 0.00 0.00 0.00 3.59
3875 4864 4.988540 CCATGAAACTTGTACTTGAGTCGA 59.011 41.667 0.00 0.00 0.00 4.20
3876 4865 4.988540 TCCATGAAACTTGTACTTGAGTCG 59.011 41.667 0.00 0.00 0.00 4.18
3877 4866 6.223852 TCTCCATGAAACTTGTACTTGAGTC 58.776 40.000 0.00 0.00 0.00 3.36
3878 4867 6.174720 TCTCCATGAAACTTGTACTTGAGT 57.825 37.500 0.00 0.00 0.00 3.41
3879 4868 6.146837 CACTCTCCATGAAACTTGTACTTGAG 59.853 42.308 0.00 0.00 0.00 3.02
3880 4869 5.991606 CACTCTCCATGAAACTTGTACTTGA 59.008 40.000 0.00 0.00 0.00 3.02
3881 4870 5.760253 ACACTCTCCATGAAACTTGTACTTG 59.240 40.000 0.00 0.00 0.00 3.16
3882 4871 5.930135 ACACTCTCCATGAAACTTGTACTT 58.070 37.500 0.00 0.00 0.00 2.24
3883 4872 5.552870 ACACTCTCCATGAAACTTGTACT 57.447 39.130 0.00 0.00 0.00 2.73
3884 4873 7.095187 CCTTAACACTCTCCATGAAACTTGTAC 60.095 40.741 0.00 0.00 0.00 2.90
3885 4874 6.934645 CCTTAACACTCTCCATGAAACTTGTA 59.065 38.462 0.00 0.00 0.00 2.41
3886 4875 5.765182 CCTTAACACTCTCCATGAAACTTGT 59.235 40.000 0.00 0.00 0.00 3.16
3887 4876 5.182001 CCCTTAACACTCTCCATGAAACTTG 59.818 44.000 0.00 0.00 0.00 3.16
3888 4877 5.316987 CCCTTAACACTCTCCATGAAACTT 58.683 41.667 0.00 0.00 0.00 2.66
3889 4878 4.807643 GCCCTTAACACTCTCCATGAAACT 60.808 45.833 0.00 0.00 0.00 2.66
3890 4879 3.440522 GCCCTTAACACTCTCCATGAAAC 59.559 47.826 0.00 0.00 0.00 2.78
3891 4880 3.073798 TGCCCTTAACACTCTCCATGAAA 59.926 43.478 0.00 0.00 0.00 2.69
3892 4881 2.642311 TGCCCTTAACACTCTCCATGAA 59.358 45.455 0.00 0.00 0.00 2.57
3893 4882 2.265367 TGCCCTTAACACTCTCCATGA 58.735 47.619 0.00 0.00 0.00 3.07
3894 4883 2.787473 TGCCCTTAACACTCTCCATG 57.213 50.000 0.00 0.00 0.00 3.66
3895 4884 4.018050 AGAAATGCCCTTAACACTCTCCAT 60.018 41.667 0.00 0.00 0.00 3.41
3896 4885 3.330701 AGAAATGCCCTTAACACTCTCCA 59.669 43.478 0.00 0.00 0.00 3.86
3897 4886 3.956744 AGAAATGCCCTTAACACTCTCC 58.043 45.455 0.00 0.00 0.00 3.71
3898 4887 5.354513 GGTTAGAAATGCCCTTAACACTCTC 59.645 44.000 0.00 0.00 0.00 3.20
3899 4888 5.222048 TGGTTAGAAATGCCCTTAACACTCT 60.222 40.000 0.00 0.00 0.00 3.24
3900 4889 5.007682 TGGTTAGAAATGCCCTTAACACTC 58.992 41.667 0.00 0.00 0.00 3.51
3901 4890 4.993028 TGGTTAGAAATGCCCTTAACACT 58.007 39.130 0.00 0.00 0.00 3.55
3902 4891 5.466819 GTTGGTTAGAAATGCCCTTAACAC 58.533 41.667 0.00 0.00 0.00 3.32
3903 4892 4.525100 GGTTGGTTAGAAATGCCCTTAACA 59.475 41.667 0.00 0.00 0.00 2.41
3904 4893 4.081862 GGGTTGGTTAGAAATGCCCTTAAC 60.082 45.833 0.00 0.00 0.00 2.01
3905 4894 4.090819 GGGTTGGTTAGAAATGCCCTTAA 58.909 43.478 0.00 0.00 0.00 1.85
3906 4895 3.564790 GGGGTTGGTTAGAAATGCCCTTA 60.565 47.826 0.00 0.00 35.19 2.69
3907 4896 2.536066 GGGTTGGTTAGAAATGCCCTT 58.464 47.619 0.00 0.00 0.00 3.95
3908 4897 1.273041 GGGGTTGGTTAGAAATGCCCT 60.273 52.381 0.00 0.00 35.19 5.19
3909 4898 1.191535 GGGGTTGGTTAGAAATGCCC 58.808 55.000 0.00 0.00 0.00 5.36
3910 4899 1.191535 GGGGGTTGGTTAGAAATGCC 58.808 55.000 0.00 0.00 0.00 4.40
3911 4900 1.931635 TGGGGGTTGGTTAGAAATGC 58.068 50.000 0.00 0.00 0.00 3.56
3912 4901 4.097286 CGTATTGGGGGTTGGTTAGAAATG 59.903 45.833 0.00 0.00 0.00 2.32
3913 4902 4.274978 CGTATTGGGGGTTGGTTAGAAAT 58.725 43.478 0.00 0.00 0.00 2.17
3914 4903 3.561744 CCGTATTGGGGGTTGGTTAGAAA 60.562 47.826 0.00 0.00 0.00 2.52
3915 4904 2.026075 CCGTATTGGGGGTTGGTTAGAA 60.026 50.000 0.00 0.00 0.00 2.10
3916 4905 1.560611 CCGTATTGGGGGTTGGTTAGA 59.439 52.381 0.00 0.00 0.00 2.10
3917 4906 2.020181 GCCGTATTGGGGGTTGGTTAG 61.020 57.143 0.00 0.00 38.63 2.34
3918 4907 0.034283 GCCGTATTGGGGGTTGGTTA 60.034 55.000 0.00 0.00 38.63 2.85
3919 4908 1.304630 GCCGTATTGGGGGTTGGTT 60.305 57.895 0.00 0.00 38.63 3.67
3920 4909 2.357446 GCCGTATTGGGGGTTGGT 59.643 61.111 0.00 0.00 38.63 3.67
3921 4910 2.441348 GGCCGTATTGGGGGTTGG 60.441 66.667 0.00 0.00 38.63 3.77
3922 4911 0.183971 TATGGCCGTATTGGGGGTTG 59.816 55.000 0.00 0.00 38.63 3.77
3923 4912 0.927767 TTATGGCCGTATTGGGGGTT 59.072 50.000 5.26 0.00 38.63 4.11
3924 4913 0.476771 CTTATGGCCGTATTGGGGGT 59.523 55.000 5.26 0.00 38.63 4.95
3925 4914 0.251165 CCTTATGGCCGTATTGGGGG 60.251 60.000 5.26 0.35 38.63 5.40
3926 4915 0.251165 CCCTTATGGCCGTATTGGGG 60.251 60.000 25.22 21.71 38.63 4.96
3927 4916 0.768622 TCCCTTATGGCCGTATTGGG 59.231 55.000 26.25 26.25 38.63 4.12
3928 4917 1.420138 ACTCCCTTATGGCCGTATTGG 59.580 52.381 5.26 11.06 42.50 3.16
3929 4918 2.930826 ACTCCCTTATGGCCGTATTG 57.069 50.000 5.26 2.11 0.00 1.90
3930 4919 5.376756 TTTTACTCCCTTATGGCCGTATT 57.623 39.130 5.26 0.00 0.00 1.89
3931 4920 5.376756 TTTTTACTCCCTTATGGCCGTAT 57.623 39.130 5.26 0.00 0.00 3.06
3932 4921 4.840716 TTTTTACTCCCTTATGGCCGTA 57.159 40.909 0.00 0.00 0.00 4.02
3933 4922 3.724732 TTTTTACTCCCTTATGGCCGT 57.275 42.857 1.35 1.35 0.00 5.68
3934 4923 5.126384 TGAAATTTTTACTCCCTTATGGCCG 59.874 40.000 0.00 0.00 0.00 6.13
3935 4924 6.154534 ACTGAAATTTTTACTCCCTTATGGCC 59.845 38.462 0.00 0.00 0.00 5.36
3936 4925 7.170393 ACTGAAATTTTTACTCCCTTATGGC 57.830 36.000 0.00 0.00 0.00 4.40
3949 4938 7.650504 GCCGTAAAGGAGTAAACTGAAATTTTT 59.349 33.333 0.00 0.00 45.00 1.94
3950 4939 7.143340 GCCGTAAAGGAGTAAACTGAAATTTT 58.857 34.615 0.00 0.00 45.00 1.82
3951 4940 6.567132 CGCCGTAAAGGAGTAAACTGAAATTT 60.567 38.462 0.00 0.00 45.00 1.82
3952 4941 5.106830 CGCCGTAAAGGAGTAAACTGAAATT 60.107 40.000 0.00 0.00 45.00 1.82
3953 4942 4.390909 CGCCGTAAAGGAGTAAACTGAAAT 59.609 41.667 0.00 0.00 45.00 2.17
3954 4943 3.742369 CGCCGTAAAGGAGTAAACTGAAA 59.258 43.478 0.00 0.00 45.00 2.69
3955 4944 3.319755 CGCCGTAAAGGAGTAAACTGAA 58.680 45.455 0.00 0.00 45.00 3.02
3956 4945 2.353011 CCGCCGTAAAGGAGTAAACTGA 60.353 50.000 0.00 0.00 45.00 3.41
3957 4946 1.997606 CCGCCGTAAAGGAGTAAACTG 59.002 52.381 0.00 0.00 45.00 3.16
3958 4947 1.895131 TCCGCCGTAAAGGAGTAAACT 59.105 47.619 0.00 0.00 45.00 2.66
3959 4948 1.995484 GTCCGCCGTAAAGGAGTAAAC 59.005 52.381 0.00 0.00 45.00 2.01
3960 4949 1.066929 GGTCCGCCGTAAAGGAGTAAA 60.067 52.381 0.00 0.00 45.00 2.01
3961 4950 0.532115 GGTCCGCCGTAAAGGAGTAA 59.468 55.000 0.00 0.00 45.00 2.24
3962 4951 0.323725 AGGTCCGCCGTAAAGGAGTA 60.324 55.000 0.00 0.00 45.00 2.59
3963 4952 0.323725 TAGGTCCGCCGTAAAGGAGT 60.324 55.000 0.00 0.00 45.00 3.85
3964 4953 0.384669 CTAGGTCCGCCGTAAAGGAG 59.615 60.000 0.00 0.00 45.00 3.69
3965 4954 1.669999 GCTAGGTCCGCCGTAAAGGA 61.670 60.000 0.00 0.00 45.00 3.36
3966 4955 1.227176 GCTAGGTCCGCCGTAAAGG 60.227 63.158 0.00 0.00 44.97 3.11
3967 4956 1.227176 GGCTAGGTCCGCCGTAAAG 60.227 63.158 0.00 0.00 37.87 1.85
3968 4957 2.894919 GGCTAGGTCCGCCGTAAA 59.105 61.111 0.00 0.00 37.87 2.01
3977 4966 1.713297 TTTAGGGGATCGGCTAGGTC 58.287 55.000 0.00 0.00 0.00 3.85
3978 4967 2.185663 TTTTAGGGGATCGGCTAGGT 57.814 50.000 0.00 0.00 0.00 3.08
3979 4968 3.412386 CATTTTTAGGGGATCGGCTAGG 58.588 50.000 0.00 0.00 0.00 3.02
3980 4969 2.814336 GCATTTTTAGGGGATCGGCTAG 59.186 50.000 0.00 0.00 0.00 3.42
3981 4970 2.441750 AGCATTTTTAGGGGATCGGCTA 59.558 45.455 0.00 0.00 0.00 3.93
3982 4971 1.215423 AGCATTTTTAGGGGATCGGCT 59.785 47.619 0.00 0.00 0.00 5.52
3983 4972 1.692411 AGCATTTTTAGGGGATCGGC 58.308 50.000 0.00 0.00 0.00 5.54
3984 4973 3.250040 CGTTAGCATTTTTAGGGGATCGG 59.750 47.826 0.00 0.00 0.00 4.18
3985 4974 4.124238 TCGTTAGCATTTTTAGGGGATCG 58.876 43.478 0.00 0.00 0.00 3.69
3986 4975 5.589050 ACTTCGTTAGCATTTTTAGGGGATC 59.411 40.000 0.00 0.00 0.00 3.36
3987 4976 5.506708 ACTTCGTTAGCATTTTTAGGGGAT 58.493 37.500 0.00 0.00 0.00 3.85
3988 4977 4.913784 ACTTCGTTAGCATTTTTAGGGGA 58.086 39.130 0.00 0.00 0.00 4.81
3989 4978 6.937436 ATACTTCGTTAGCATTTTTAGGGG 57.063 37.500 0.00 0.00 0.00 4.79
3999 4988 9.656040 TGGAGTAAAAATTATACTTCGTTAGCA 57.344 29.630 5.57 0.00 32.46 3.49
4004 4993 9.159364 GGAGTTGGAGTAAAAATTATACTTCGT 57.841 33.333 5.57 0.00 32.46 3.85
4005 4994 8.610035 GGGAGTTGGAGTAAAAATTATACTTCG 58.390 37.037 5.57 0.00 32.46 3.79
4006 4995 9.682465 AGGGAGTTGGAGTAAAAATTATACTTC 57.318 33.333 5.57 4.59 33.85 3.01
4011 5000 9.642343 GGAATAGGGAGTTGGAGTAAAAATTAT 57.358 33.333 0.00 0.00 0.00 1.28
4012 5001 8.057011 GGGAATAGGGAGTTGGAGTAAAAATTA 58.943 37.037 0.00 0.00 0.00 1.40
4013 5002 6.895756 GGGAATAGGGAGTTGGAGTAAAAATT 59.104 38.462 0.00 0.00 0.00 1.82
4014 5003 6.432581 GGGAATAGGGAGTTGGAGTAAAAAT 58.567 40.000 0.00 0.00 0.00 1.82
4015 5004 5.281349 GGGGAATAGGGAGTTGGAGTAAAAA 60.281 44.000 0.00 0.00 0.00 1.94
4016 5005 4.228895 GGGGAATAGGGAGTTGGAGTAAAA 59.771 45.833 0.00 0.00 0.00 1.52
4017 5006 3.784202 GGGGAATAGGGAGTTGGAGTAAA 59.216 47.826 0.00 0.00 0.00 2.01
4018 5007 3.390819 GGGGAATAGGGAGTTGGAGTAA 58.609 50.000 0.00 0.00 0.00 2.24
4019 5008 2.361070 GGGGGAATAGGGAGTTGGAGTA 60.361 54.545 0.00 0.00 0.00 2.59
4020 5009 1.628327 GGGGGAATAGGGAGTTGGAGT 60.628 57.143 0.00 0.00 0.00 3.85
4021 5010 1.141185 GGGGGAATAGGGAGTTGGAG 58.859 60.000 0.00 0.00 0.00 3.86
4022 5011 3.352505 GGGGGAATAGGGAGTTGGA 57.647 57.895 0.00 0.00 0.00 3.53
4037 5026 7.670140 GGAGTATATTTAGGAAAATCTTGGGGG 59.330 40.741 0.00 0.00 36.67 5.40
4038 5027 8.224720 TGGAGTATATTTAGGAAAATCTTGGGG 58.775 37.037 0.00 0.00 36.67 4.96
4039 5028 9.813826 ATGGAGTATATTTAGGAAAATCTTGGG 57.186 33.333 0.00 0.00 36.67 4.12
4043 5032 9.712305 CACGATGGAGTATATTTAGGAAAATCT 57.288 33.333 0.00 0.00 36.67 2.40
4044 5033 9.490379 ACACGATGGAGTATATTTAGGAAAATC 57.510 33.333 0.00 0.00 36.67 2.17
4045 5034 9.273016 CACACGATGGAGTATATTTAGGAAAAT 57.727 33.333 0.00 0.00 38.80 1.82
4046 5035 8.657074 CACACGATGGAGTATATTTAGGAAAA 57.343 34.615 0.00 0.00 0.00 2.29
4063 5052 2.557059 TACTCGGCTGCCACACGATG 62.557 60.000 20.29 0.00 35.93 3.84
4064 5053 1.884075 TTACTCGGCTGCCACACGAT 61.884 55.000 20.29 0.00 35.93 3.73
4065 5054 2.089887 TTTACTCGGCTGCCACACGA 62.090 55.000 20.29 8.97 35.14 4.35
4066 5055 1.225376 TTTTACTCGGCTGCCACACG 61.225 55.000 20.29 4.47 0.00 4.49
4067 5056 0.237498 GTTTTACTCGGCTGCCACAC 59.763 55.000 20.29 0.00 0.00 3.82
4068 5057 0.107831 AGTTTTACTCGGCTGCCACA 59.892 50.000 20.29 3.06 0.00 4.17
4069 5058 0.796927 GAGTTTTACTCGGCTGCCAC 59.203 55.000 20.29 7.23 35.28 5.01
4070 5059 0.321298 GGAGTTTTACTCGGCTGCCA 60.321 55.000 20.29 5.07 45.96 4.92
4071 5060 1.025113 GGGAGTTTTACTCGGCTGCC 61.025 60.000 9.11 9.11 45.96 4.85
4072 5061 0.036294 AGGGAGTTTTACTCGGCTGC 60.036 55.000 0.00 0.00 45.96 5.25
4073 5062 1.550976 AGAGGGAGTTTTACTCGGCTG 59.449 52.381 1.12 0.00 45.96 4.85
4074 5063 1.826096 GAGAGGGAGTTTTACTCGGCT 59.174 52.381 1.12 0.00 45.96 5.52
4075 5064 1.469423 CGAGAGGGAGTTTTACTCGGC 60.469 57.143 0.00 0.00 45.96 5.54
4076 5065 1.469423 GCGAGAGGGAGTTTTACTCGG 60.469 57.143 14.74 0.30 45.96 4.63
4077 5066 1.469423 GGCGAGAGGGAGTTTTACTCG 60.469 57.143 0.00 0.00 45.96 4.18
4078 5067 1.134759 GGGCGAGAGGGAGTTTTACTC 60.135 57.143 0.00 0.00 44.32 2.59
4079 5068 0.903236 GGGCGAGAGGGAGTTTTACT 59.097 55.000 0.00 0.00 0.00 2.24
4080 5069 0.903236 AGGGCGAGAGGGAGTTTTAC 59.097 55.000 0.00 0.00 0.00 2.01
4081 5070 1.192428 GAGGGCGAGAGGGAGTTTTA 58.808 55.000 0.00 0.00 0.00 1.52
4082 5071 1.554583 GGAGGGCGAGAGGGAGTTTT 61.555 60.000 0.00 0.00 0.00 2.43
4083 5072 1.990614 GGAGGGCGAGAGGGAGTTT 60.991 63.158 0.00 0.00 0.00 2.66
4084 5073 2.364448 GGAGGGCGAGAGGGAGTT 60.364 66.667 0.00 0.00 0.00 3.01
4085 5074 4.467107 GGGAGGGCGAGAGGGAGT 62.467 72.222 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.