Multiple sequence alignment - TraesCS4D01G272300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G272300 chr4D 100.000 3731 0 0 1 3731 442643648 442647378 0.000000e+00 6890.0
1 TraesCS4D01G272300 chr4D 79.459 1295 208 32 1192 2466 30513938 30515194 0.000000e+00 865.0
2 TraesCS4D01G272300 chr4D 78.765 1328 220 39 1164 2466 30557925 30556635 0.000000e+00 833.0
3 TraesCS4D01G272300 chr4D 96.009 426 16 1 3306 3731 419604073 419603649 0.000000e+00 691.0
4 TraesCS4D01G272300 chr4D 94.131 426 23 2 3306 3731 419597704 419597281 0.000000e+00 647.0
5 TraesCS4D01G272300 chr4D 80.158 887 140 19 1192 2069 30518477 30519336 6.800000e-177 630.0
6 TraesCS4D01G272300 chr4A 94.185 1651 71 8 990 2627 24855226 24853588 0.000000e+00 2494.0
7 TraesCS4D01G272300 chr4A 79.690 1290 214 28 1192 2466 572506832 572505576 0.000000e+00 887.0
8 TraesCS4D01G272300 chr4A 79.445 613 83 31 1868 2466 572308261 572308844 9.710000e-106 394.0
9 TraesCS4D01G272300 chr7D 97.541 976 22 1 1 974 260663823 260664798 0.000000e+00 1668.0
10 TraesCS4D01G272300 chr7D 97.433 974 25 0 1 974 479536915 479535942 0.000000e+00 1661.0
11 TraesCS4D01G272300 chr7D 97.228 974 26 1 1 974 424576474 424575502 0.000000e+00 1648.0
12 TraesCS4D01G272300 chr7D 97.059 34 1 0 1351 1384 100987546 100987513 1.450000e-04 58.4
13 TraesCS4D01G272300 chr5D 97.536 974 24 0 1 974 110336700 110335727 0.000000e+00 1666.0
14 TraesCS4D01G272300 chr5D 97.125 974 28 0 1 974 549944346 549945319 0.000000e+00 1644.0
15 TraesCS4D01G272300 chr5D 93.648 677 40 3 2631 3307 458311860 458311187 0.000000e+00 1009.0
16 TraesCS4D01G272300 chr5D 91.003 678 55 5 2631 3307 559390573 559391245 0.000000e+00 909.0
17 TraesCS4D01G272300 chr5D 96.956 427 10 3 3306 3731 458311150 458310726 0.000000e+00 713.0
18 TraesCS4D01G272300 chr5D 92.272 427 27 4 3306 3731 559391282 559391703 5.330000e-168 601.0
19 TraesCS4D01G272300 chr1D 97.536 974 24 0 1 974 285572412 285573385 0.000000e+00 1666.0
20 TraesCS4D01G272300 chr1D 93.058 677 44 3 2631 3307 399070950 399070277 0.000000e+00 987.0
21 TraesCS4D01G272300 chr1D 78.566 1353 217 44 1152 2466 8854366 8855683 0.000000e+00 824.0
22 TraesCS4D01G272300 chr1D 97.418 426 9 1 3306 3731 399070240 399069817 0.000000e+00 725.0
23 TraesCS4D01G272300 chr2D 97.331 974 26 0 1 974 44120237 44119264 0.000000e+00 1655.0
24 TraesCS4D01G272300 chr2D 97.331 974 25 1 1 974 313843946 313842974 0.000000e+00 1653.0
25 TraesCS4D01G272300 chr2D 97.125 974 28 0 1 974 314436088 314437061 0.000000e+00 1644.0
26 TraesCS4D01G272300 chr3A 92.643 666 43 5 2642 3307 9686118 9685459 0.000000e+00 953.0
27 TraesCS4D01G272300 chr3A 92.054 667 43 7 2642 3307 9634821 9634164 0.000000e+00 929.0
28 TraesCS4D01G272300 chr3A 96.253 427 14 2 3306 3731 9634127 9633702 0.000000e+00 699.0
29 TraesCS4D01G272300 chr3A 96.019 427 14 2 3306 3731 9685422 9684998 0.000000e+00 691.0
30 TraesCS4D01G272300 chr1B 78.959 1364 218 44 1140 2466 12093440 12094771 0.000000e+00 865.0
31 TraesCS4D01G272300 chr1B 83.007 306 35 9 1140 1438 12071002 12071297 1.030000e-65 261.0
32 TraesCS4D01G272300 chr7B 89.823 678 61 6 2631 3307 379183619 379182949 0.000000e+00 863.0
33 TraesCS4D01G272300 chr7B 96.970 33 1 0 1351 1383 57269148 57269116 5.210000e-04 56.5
34 TraesCS4D01G272300 chr5B 89.676 678 65 5 2630 3307 268136627 268137299 0.000000e+00 859.0
35 TraesCS4D01G272300 chr5B 95.116 430 13 3 3306 3728 703467359 703467787 0.000000e+00 671.0
36 TraesCS4D01G272300 chr5B 93.427 426 20 2 3306 3731 268137336 268137753 3.160000e-175 625.0
37 TraesCS4D01G272300 chr4B 78.478 1301 208 46 1192 2468 43786751 43788003 0.000000e+00 785.0
38 TraesCS4D01G272300 chr4B 77.975 1294 223 35 1192 2466 43792909 43791659 0.000000e+00 754.0
39 TraesCS4D01G272300 chr4B 77.306 683 110 29 1812 2478 43771982 43771329 9.850000e-96 361.0
40 TraesCS4D01G272300 chr7A 90.541 592 49 5 2716 3307 613554091 613553507 0.000000e+00 776.0
41 TraesCS4D01G272300 chr3B 86.647 674 77 6 2631 3301 806761839 806762502 0.000000e+00 734.0
42 TraesCS4D01G272300 chr3B 97.297 37 1 0 2631 2667 768487860 768487896 3.110000e-06 63.9
43 TraesCS4D01G272300 chrUn 98.810 252 3 0 1328 1579 339715586 339715837 2.040000e-122 449.0
44 TraesCS4D01G272300 chrUn 98.810 252 3 0 1328 1579 397315560 397315811 2.040000e-122 449.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G272300 chr4D 442643648 442647378 3730 False 6890.0 6890 100.0000 1 3731 1 chr4D.!!$F1 3730
1 TraesCS4D01G272300 chr4D 30556635 30557925 1290 True 833.0 833 78.7650 1164 2466 1 chr4D.!!$R1 1302
2 TraesCS4D01G272300 chr4D 30513938 30519336 5398 False 747.5 865 79.8085 1192 2466 2 chr4D.!!$F2 1274
3 TraesCS4D01G272300 chr4A 24853588 24855226 1638 True 2494.0 2494 94.1850 990 2627 1 chr4A.!!$R1 1637
4 TraesCS4D01G272300 chr4A 572505576 572506832 1256 True 887.0 887 79.6900 1192 2466 1 chr4A.!!$R2 1274
5 TraesCS4D01G272300 chr4A 572308261 572308844 583 False 394.0 394 79.4450 1868 2466 1 chr4A.!!$F1 598
6 TraesCS4D01G272300 chr7D 260663823 260664798 975 False 1668.0 1668 97.5410 1 974 1 chr7D.!!$F1 973
7 TraesCS4D01G272300 chr7D 479535942 479536915 973 True 1661.0 1661 97.4330 1 974 1 chr7D.!!$R3 973
8 TraesCS4D01G272300 chr7D 424575502 424576474 972 True 1648.0 1648 97.2280 1 974 1 chr7D.!!$R2 973
9 TraesCS4D01G272300 chr5D 110335727 110336700 973 True 1666.0 1666 97.5360 1 974 1 chr5D.!!$R1 973
10 TraesCS4D01G272300 chr5D 549944346 549945319 973 False 1644.0 1644 97.1250 1 974 1 chr5D.!!$F1 973
11 TraesCS4D01G272300 chr5D 458310726 458311860 1134 True 861.0 1009 95.3020 2631 3731 2 chr5D.!!$R2 1100
12 TraesCS4D01G272300 chr5D 559390573 559391703 1130 False 755.0 909 91.6375 2631 3731 2 chr5D.!!$F2 1100
13 TraesCS4D01G272300 chr1D 285572412 285573385 973 False 1666.0 1666 97.5360 1 974 1 chr1D.!!$F2 973
14 TraesCS4D01G272300 chr1D 399069817 399070950 1133 True 856.0 987 95.2380 2631 3731 2 chr1D.!!$R1 1100
15 TraesCS4D01G272300 chr1D 8854366 8855683 1317 False 824.0 824 78.5660 1152 2466 1 chr1D.!!$F1 1314
16 TraesCS4D01G272300 chr2D 44119264 44120237 973 True 1655.0 1655 97.3310 1 974 1 chr2D.!!$R1 973
17 TraesCS4D01G272300 chr2D 313842974 313843946 972 True 1653.0 1653 97.3310 1 974 1 chr2D.!!$R2 973
18 TraesCS4D01G272300 chr2D 314436088 314437061 973 False 1644.0 1644 97.1250 1 974 1 chr2D.!!$F1 973
19 TraesCS4D01G272300 chr3A 9684998 9686118 1120 True 822.0 953 94.3310 2642 3731 2 chr3A.!!$R2 1089
20 TraesCS4D01G272300 chr3A 9633702 9634821 1119 True 814.0 929 94.1535 2642 3731 2 chr3A.!!$R1 1089
21 TraesCS4D01G272300 chr1B 12093440 12094771 1331 False 865.0 865 78.9590 1140 2466 1 chr1B.!!$F2 1326
22 TraesCS4D01G272300 chr7B 379182949 379183619 670 True 863.0 863 89.8230 2631 3307 1 chr7B.!!$R2 676
23 TraesCS4D01G272300 chr5B 268136627 268137753 1126 False 742.0 859 91.5515 2630 3731 2 chr5B.!!$F2 1101
24 TraesCS4D01G272300 chr4B 43786751 43788003 1252 False 785.0 785 78.4780 1192 2468 1 chr4B.!!$F1 1276
25 TraesCS4D01G272300 chr4B 43791659 43792909 1250 True 754.0 754 77.9750 1192 2466 1 chr4B.!!$R2 1274
26 TraesCS4D01G272300 chr4B 43771329 43771982 653 True 361.0 361 77.3060 1812 2478 1 chr4B.!!$R1 666
27 TraesCS4D01G272300 chr7A 613553507 613554091 584 True 776.0 776 90.5410 2716 3307 1 chr7A.!!$R1 591
28 TraesCS4D01G272300 chr3B 806761839 806762502 663 False 734.0 734 86.6470 2631 3301 1 chr3B.!!$F2 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 310 0.743345 GGCCGAGGAATTAACTGCGT 60.743 55.0 0.0 0.0 0.0 5.24 F
1969 2014 0.107703 CCAGCGGGCTAAAGATGACA 60.108 55.0 0.0 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2045 2096 0.384669 GTACTCGTCCGGAATGGGAG 59.615 60.0 5.23 13.34 36.58 4.30 R
3065 3139 0.179067 TCGGTTCAGTGACAACCCAC 60.179 55.0 8.17 0.00 40.37 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
308 310 0.743345 GGCCGAGGAATTAACTGCGT 60.743 55.000 0.00 0.00 0.00 5.24
961 965 3.964031 TCTGTTTTAACACCATGCCCTTT 59.036 39.130 0.00 0.00 34.70 3.11
974 978 2.658548 CCCTTTGGGCTCAAGAACC 58.341 57.895 0.00 0.00 35.35 3.62
981 985 1.276622 GGGCTCAAGAACCCTAGTCA 58.723 55.000 1.23 0.00 43.36 3.41
982 986 1.066071 GGGCTCAAGAACCCTAGTCAC 60.066 57.143 1.23 0.00 43.36 3.67
983 987 1.623811 GGCTCAAGAACCCTAGTCACA 59.376 52.381 0.00 0.00 0.00 3.58
984 988 2.237392 GGCTCAAGAACCCTAGTCACAT 59.763 50.000 0.00 0.00 0.00 3.21
985 989 3.265791 GCTCAAGAACCCTAGTCACATG 58.734 50.000 0.00 0.00 0.00 3.21
986 990 3.866651 CTCAAGAACCCTAGTCACATGG 58.133 50.000 0.00 0.00 0.00 3.66
987 991 2.027192 TCAAGAACCCTAGTCACATGGC 60.027 50.000 0.00 0.00 0.00 4.40
988 992 1.958288 AGAACCCTAGTCACATGGCT 58.042 50.000 0.00 0.00 0.00 4.75
989 993 2.269940 AGAACCCTAGTCACATGGCTT 58.730 47.619 0.00 0.00 0.00 4.35
990 994 3.450904 AGAACCCTAGTCACATGGCTTA 58.549 45.455 0.00 0.00 0.00 3.09
991 995 4.040755 AGAACCCTAGTCACATGGCTTAT 58.959 43.478 0.00 0.00 0.00 1.73
992 996 5.216622 AGAACCCTAGTCACATGGCTTATA 58.783 41.667 0.00 0.00 0.00 0.98
993 997 5.846714 AGAACCCTAGTCACATGGCTTATAT 59.153 40.000 0.00 0.00 0.00 0.86
994 998 7.016914 AGAACCCTAGTCACATGGCTTATATA 58.983 38.462 0.00 0.00 0.00 0.86
995 999 7.680310 AGAACCCTAGTCACATGGCTTATATAT 59.320 37.037 0.00 0.00 0.00 0.86
996 1000 8.911018 AACCCTAGTCACATGGCTTATATATA 57.089 34.615 0.00 0.00 0.00 0.86
997 1001 8.540507 ACCCTAGTCACATGGCTTATATATAG 57.459 38.462 0.00 0.00 0.00 1.31
998 1002 8.123130 ACCCTAGTCACATGGCTTATATATAGT 58.877 37.037 0.00 0.00 0.00 2.12
999 1003 9.642343 CCCTAGTCACATGGCTTATATATAGTA 57.358 37.037 0.00 0.00 0.00 1.82
1150 1161 2.520979 CTTCTCGGAAGCTCAACGTAG 58.479 52.381 0.00 0.00 0.00 3.51
1798 1839 5.112686 AGAAGAAGGATTACGTCAAGATGC 58.887 41.667 0.00 0.00 0.00 3.91
1965 2010 1.224592 CCACCAGCGGGCTAAAGAT 59.775 57.895 1.46 0.00 37.90 2.40
1969 2014 0.107703 CCAGCGGGCTAAAGATGACA 60.108 55.000 0.00 0.00 0.00 3.58
1983 2031 4.002906 AGATGACAAAGCAAGTAACGGA 57.997 40.909 0.00 0.00 0.00 4.69
2120 2171 2.579201 CAAGGACCGACTCGCCAT 59.421 61.111 0.00 0.00 0.00 4.40
2122 2173 3.665675 AAGGACCGACTCGCCATGC 62.666 63.158 0.00 0.00 0.00 4.06
2484 2550 3.598715 GCTTGGCTGCAGTGCACA 61.599 61.111 21.04 9.22 33.79 4.57
2520 2586 4.683832 AGTAGAGTGGTCGATTAATGCAC 58.316 43.478 0.00 0.00 0.00 4.57
2565 2631 2.225267 TGATGGAGTGGACTGGTCACTA 60.225 50.000 3.10 0.00 44.51 2.74
2608 2674 3.955650 ACATGCCCATACCGTATCTAC 57.044 47.619 0.00 0.00 0.00 2.59
2609 2675 3.236047 ACATGCCCATACCGTATCTACA 58.764 45.455 0.00 0.00 0.00 2.74
2610 2676 3.006537 ACATGCCCATACCGTATCTACAC 59.993 47.826 0.00 0.00 0.00 2.90
2614 2680 2.298163 CCCATACCGTATCTACACCACC 59.702 54.545 0.00 0.00 0.00 4.61
2627 2693 3.375647 ACACCACCCTGTTTTGTAAGT 57.624 42.857 0.00 0.00 0.00 2.24
2628 2694 3.020984 ACACCACCCTGTTTTGTAAGTG 58.979 45.455 0.00 0.00 0.00 3.16
2639 2705 9.063615 CCCTGTTTTGTAAGTGTACTAGAAAAT 57.936 33.333 0.00 0.00 0.00 1.82
2682 2749 2.864770 AAAACAACCCCCACACGCCT 62.865 55.000 0.00 0.00 0.00 5.52
2699 2766 2.101249 CGCCTTTGCCCATTGAATATGT 59.899 45.455 0.00 0.00 0.00 2.29
2758 2827 7.623999 AACATGACTAATATCTCACCCTCAT 57.376 36.000 0.00 0.00 0.00 2.90
2777 2846 3.940852 TCATGTCCACATCCTTCATTTCG 59.059 43.478 0.00 0.00 33.61 3.46
2789 2861 7.172190 ACATCCTTCATTTCGATATGACATCAC 59.828 37.037 16.78 0.00 34.41 3.06
2824 2896 1.699730 TGTCCTCTTTGTCGTCCTCA 58.300 50.000 0.00 0.00 0.00 3.86
2863 2935 6.628621 CGGTACCAGTTATCAGTAACCAATGA 60.629 42.308 13.54 0.00 40.88 2.57
2908 2980 1.661463 TGAGCCTCCTTCATGTCCTT 58.339 50.000 0.00 0.00 0.00 3.36
2938 3011 5.576447 AAGACCGTTGAACACAGATTTTT 57.424 34.783 0.00 0.00 0.00 1.94
3064 3138 8.432805 CCTTAGTTGGACTCCTCATACATTATT 58.567 37.037 0.00 0.00 0.00 1.40
3065 3139 9.265901 CTTAGTTGGACTCCTCATACATTATTG 57.734 37.037 0.00 0.00 0.00 1.90
3067 3141 7.050377 AGTTGGACTCCTCATACATTATTGTG 58.950 38.462 0.48 0.00 36.53 3.33
3070 3144 5.163195 GGACTCCTCATACATTATTGTGGGT 60.163 44.000 0.48 0.00 36.53 4.51
3080 3154 5.136828 ACATTATTGTGGGTTGTCACTGAA 58.863 37.500 0.00 0.00 38.40 3.02
3109 3183 2.688958 AGGCTAGTCGTATGTGAAGACC 59.311 50.000 0.00 0.00 37.26 3.85
3275 3351 1.860676 TATCGGCGCTTCCAATACAC 58.139 50.000 7.64 0.00 34.01 2.90
3279 3355 1.132262 CGGCGCTTCCAATACACATTT 59.868 47.619 7.64 0.00 34.01 2.32
3411 3613 3.054728 ACATCATCGTTTGGTCCACCATA 60.055 43.478 0.00 0.00 46.97 2.74
3471 3697 5.880332 CCCATCACCTATTAATAATCCACCG 59.120 44.000 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
485 489 3.130633 CGAATATGTCCCAATTCTCGCA 58.869 45.455 0.00 0.00 31.29 5.10
692 696 0.478507 ACCAGGTTTGCTAGCCAGTT 59.521 50.000 13.29 0.00 0.00 3.16
827 831 0.671781 AATGAGTCGTGTCCTGCAGC 60.672 55.000 8.66 0.00 0.00 5.25
992 996 8.927411 ACTGGTACGGGTTTTATTGTACTATAT 58.073 33.333 0.00 0.00 40.47 0.86
993 997 8.305046 ACTGGTACGGGTTTTATTGTACTATA 57.695 34.615 0.00 0.00 40.47 1.31
994 998 7.186570 ACTGGTACGGGTTTTATTGTACTAT 57.813 36.000 0.00 0.00 40.47 2.12
995 999 6.603940 ACTGGTACGGGTTTTATTGTACTA 57.396 37.500 0.00 0.00 40.47 1.82
996 1000 5.488262 ACTGGTACGGGTTTTATTGTACT 57.512 39.130 0.00 0.00 40.47 2.73
997 1001 6.183360 GCTTACTGGTACGGGTTTTATTGTAC 60.183 42.308 0.00 0.00 40.47 2.90
998 1002 5.874261 GCTTACTGGTACGGGTTTTATTGTA 59.126 40.000 0.00 0.00 40.47 2.41
999 1003 4.696877 GCTTACTGGTACGGGTTTTATTGT 59.303 41.667 0.00 0.00 40.47 2.71
1005 1009 4.572909 CTTAAGCTTACTGGTACGGGTTT 58.427 43.478 5.45 0.00 40.47 3.27
1049 1053 0.753479 TTCAAGTTTTCCAGCGGCCA 60.753 50.000 2.24 0.00 0.00 5.36
1136 1147 1.544691 TCTCCACTACGTTGAGCTTCC 59.455 52.381 3.44 0.00 0.00 3.46
1145 1156 3.812019 CGGCGCTCTCCACTACGT 61.812 66.667 7.64 0.00 0.00 3.57
1150 1161 3.736482 CTACGACGGCGCTCTCCAC 62.736 68.421 12.58 0.00 42.48 4.02
1295 1312 2.189521 GGATGGTGGCGGTAGTGG 59.810 66.667 0.00 0.00 0.00 4.00
1297 1314 1.001760 AGAGGATGGTGGCGGTAGT 59.998 57.895 0.00 0.00 0.00 2.73
1299 1316 1.760875 GGAGAGGATGGTGGCGGTA 60.761 63.158 0.00 0.00 0.00 4.02
1300 1317 3.083997 GGAGAGGATGGTGGCGGT 61.084 66.667 0.00 0.00 0.00 5.68
1301 1318 2.669133 TTGGAGAGGATGGTGGCGG 61.669 63.158 0.00 0.00 0.00 6.13
1770 1811 4.264253 TGACGTAATCCTTCTTCTCGGTA 58.736 43.478 0.00 0.00 0.00 4.02
1798 1839 2.340443 GAGGAGCTTATCGCCGGG 59.660 66.667 2.18 0.00 39.89 5.73
1956 2001 4.773323 ACTTGCTTTGTCATCTTTAGCC 57.227 40.909 0.00 0.00 0.00 3.93
1965 2010 2.489971 CCTCCGTTACTTGCTTTGTCA 58.510 47.619 0.00 0.00 0.00 3.58
1969 2014 0.953960 CCGCCTCCGTTACTTGCTTT 60.954 55.000 0.00 0.00 0.00 3.51
2045 2096 0.384669 GTACTCGTCCGGAATGGGAG 59.615 60.000 5.23 13.34 36.58 4.30
2397 2463 3.749954 GCAGAGATATGCCCACCTCAATT 60.750 47.826 0.00 0.00 40.43 2.32
2469 2535 2.050934 TGTTGTGCACTGCAGCCAA 61.051 52.632 19.41 9.03 40.08 4.52
2484 2550 6.362248 ACCACTCTACTTGTTTAATGGTGTT 58.638 36.000 0.00 0.00 37.80 3.32
2520 2586 1.586422 CACCCATAGGCATCGAAGTG 58.414 55.000 0.00 0.00 36.11 3.16
2565 2631 3.125573 CTGCTGCATGTGCGCTCT 61.126 61.111 9.73 0.00 45.83 4.09
2591 2657 1.965643 GGTGTAGATACGGTATGGGCA 59.034 52.381 5.18 0.00 0.00 5.36
2608 2674 3.020984 ACACTTACAAAACAGGGTGGTG 58.979 45.455 0.00 0.00 0.00 4.17
2609 2675 3.375647 ACACTTACAAAACAGGGTGGT 57.624 42.857 0.00 0.00 0.00 4.16
2610 2676 4.457466 AGTACACTTACAAAACAGGGTGG 58.543 43.478 0.00 0.00 0.00 4.61
2627 2693 4.124238 GCACGGGCATATTTTCTAGTACA 58.876 43.478 3.77 0.00 40.72 2.90
2628 2694 3.183775 CGCACGGGCATATTTTCTAGTAC 59.816 47.826 11.77 0.00 41.24 2.73
2639 2705 2.669910 TTGCAACGCACGGGCATA 60.670 55.556 11.77 0.00 38.71 3.14
2660 2726 0.753848 CGTGTGGGGGTTGTTTTCCT 60.754 55.000 0.00 0.00 0.00 3.36
2682 2749 6.406849 GCCTTTAGACATATTCAATGGGCAAA 60.407 38.462 0.00 0.00 35.37 3.68
2758 2827 3.694043 TCGAAATGAAGGATGTGGACA 57.306 42.857 0.00 0.00 0.00 4.02
2777 2846 4.516698 GGAACATGGGTGTGATGTCATATC 59.483 45.833 0.00 0.00 38.92 1.63
2789 2861 1.586154 GACAAGCGGGAACATGGGTG 61.586 60.000 0.00 0.00 0.00 4.61
2824 2896 0.389426 GTACCGTGACCACTTGCGAT 60.389 55.000 0.00 0.00 0.00 4.58
2849 2921 3.559069 CTGGCCATCATTGGTTACTGAT 58.441 45.455 5.51 0.00 45.57 2.90
2863 2935 0.184451 CAGCTATTGGACCTGGCCAT 59.816 55.000 5.51 0.00 37.86 4.40
2886 2958 1.003580 GGACATGAAGGAGGCTCAACA 59.996 52.381 17.69 12.75 0.00 3.33
2908 2980 4.232221 GTGTTCAACGGTCTTTATCTCGA 58.768 43.478 0.00 0.00 0.00 4.04
2970 3044 7.434492 ACACAGACATATATTAGGTGTAGTGC 58.566 38.462 0.00 0.00 36.36 4.40
3064 3138 0.462937 CGGTTCAGTGACAACCCACA 60.463 55.000 8.17 0.00 40.37 4.17
3065 3139 0.179067 TCGGTTCAGTGACAACCCAC 60.179 55.000 8.17 0.00 40.37 4.61
3067 3141 1.228657 GCTCGGTTCAGTGACAACCC 61.229 60.000 8.17 0.00 40.37 4.11
3070 3144 1.272490 CCTAGCTCGGTTCAGTGACAA 59.728 52.381 0.00 0.00 0.00 3.18
3080 3154 0.467384 TACGACTAGCCTAGCTCGGT 59.533 55.000 20.13 12.28 40.44 4.69
3109 3183 2.423577 ACGAACCTTTTTCTCCATCGG 58.576 47.619 0.00 0.00 33.45 4.18
3158 3232 5.743636 ATGCCCACAGATGTATTGTTTTT 57.256 34.783 0.00 0.00 0.00 1.94
3247 3322 2.215196 GAAGCGCCGATAAATTACCCA 58.785 47.619 2.29 0.00 0.00 4.51
3248 3323 1.534163 GGAAGCGCCGATAAATTACCC 59.466 52.381 2.29 0.00 0.00 3.69
3275 3351 7.759465 TGAGACTACGTACTAAAGGAGAAATG 58.241 38.462 0.00 0.00 0.00 2.32
3279 3355 6.647229 TCATGAGACTACGTACTAAAGGAGA 58.353 40.000 0.00 0.00 0.00 3.71
3322 3437 6.380274 AGAAGGGAAGAATTAGACGTGACATA 59.620 38.462 0.00 0.00 0.00 2.29
3471 3697 4.407296 ACCTGAGATGGAAGGAAGATACAC 59.593 45.833 0.00 0.00 37.01 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.