Multiple sequence alignment - TraesCS4D01G272000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G272000 chr4D 100.000 2816 0 0 1 2816 442434183 442436998 0.000000e+00 5201.0
1 TraesCS4D01G272000 chr4D 82.799 686 58 35 20 657 379346444 379345771 2.450000e-155 558.0
2 TraesCS4D01G272000 chr4D 76.803 319 44 17 1988 2294 501974336 501974636 4.860000e-33 152.0
3 TraesCS4D01G272000 chr4A 94.856 1283 36 13 656 1929 24912436 24911175 0.000000e+00 1977.0
4 TraesCS4D01G272000 chr4A 86.325 117 8 5 547 655 141572553 141572437 1.370000e-23 121.0
5 TraesCS4D01G272000 chr4B 94.762 1279 37 11 709 1981 550520519 550521773 0.000000e+00 1964.0
6 TraesCS4D01G272000 chr4B 87.614 549 57 6 2264 2808 550521794 550522335 6.620000e-176 627.0
7 TraesCS4D01G272000 chr4B 80.335 239 36 7 1987 2217 462560884 462561119 1.340000e-38 171.0
8 TraesCS4D01G272000 chr4B 100.000 84 0 0 656 739 550520355 550520438 3.760000e-34 156.0
9 TraesCS4D01G272000 chr4B 96.774 31 1 0 709 739 550520445 550520475 5.000000e-03 52.8
10 TraesCS4D01G272000 chr4B 96.774 31 1 0 709 739 550520482 550520512 5.000000e-03 52.8
11 TraesCS4D01G272000 chr1A 80.677 709 72 29 1 659 548225321 548224628 9.060000e-135 490.0
12 TraesCS4D01G272000 chr1A 79.426 209 35 4 2015 2217 537536470 537536676 1.050000e-29 141.0
13 TraesCS4D01G272000 chr2A 85.714 483 35 18 191 660 156527818 156527357 1.960000e-131 479.0
14 TraesCS4D01G272000 chr2A 73.899 318 54 15 1988 2296 754367412 754367709 1.780000e-17 100.0
15 TraesCS4D01G272000 chr2A 73.899 318 54 15 1988 2296 754370615 754370912 1.780000e-17 100.0
16 TraesCS4D01G272000 chr2B 82.759 493 62 20 175 655 10223977 10223496 4.340000e-113 418.0
17 TraesCS4D01G272000 chr2B 78.571 238 40 7 1988 2217 389457229 389456995 2.260000e-31 147.0
18 TraesCS4D01G272000 chr6B 87.772 368 27 16 295 655 150216816 150217172 5.610000e-112 414.0
19 TraesCS4D01G272000 chr6B 74.093 193 32 16 360 540 8106798 8106984 2.340000e-06 63.9
20 TraesCS4D01G272000 chr5B 81.414 382 37 11 288 650 35808224 35808590 5.940000e-72 281.0
21 TraesCS4D01G272000 chr5B 94.000 50 1 2 492 540 583918909 583918957 1.080000e-09 75.0
22 TraesCS4D01G272000 chr5D 89.630 135 14 0 520 654 560223157 560223291 3.730000e-39 172.0
23 TraesCS4D01G272000 chr5D 78.862 246 38 11 2062 2297 50640526 50640767 1.350000e-33 154.0
24 TraesCS4D01G272000 chr5D 75.472 318 53 12 1988 2297 30115071 30114771 6.330000e-27 132.0
25 TraesCS4D01G272000 chr1B 80.383 209 33 4 2015 2217 669335363 669335569 4.860000e-33 152.0
26 TraesCS4D01G272000 chr1B 75.380 329 54 15 1977 2294 340473293 340473605 1.760000e-27 134.0
27 TraesCS4D01G272000 chr6A 78.333 240 38 10 1988 2217 64505036 64505271 2.920000e-30 143.0
28 TraesCS4D01G272000 chr6A 74.367 316 68 10 1987 2294 28946728 28947038 3.810000e-24 122.0
29 TraesCS4D01G272000 chr7A 75.625 320 54 12 1988 2298 727101279 727101583 1.360000e-28 137.0
30 TraesCS4D01G272000 chr7A 74.837 306 63 12 1500 1798 538246978 538246680 2.940000e-25 126.0
31 TraesCS4D01G272000 chr3B 75.460 326 55 13 1985 2300 788206858 788207168 4.890000e-28 135.0
32 TraesCS4D01G272000 chr7D 78.125 224 35 10 2065 2287 169355152 169355362 2.280000e-26 130.0
33 TraesCS4D01G272000 chr7D 74.257 303 70 6 1500 1798 461926914 461927212 1.370000e-23 121.0
34 TraesCS4D01G272000 chr5A 73.668 319 58 15 1987 2295 571754098 571753796 1.780000e-17 100.0
35 TraesCS4D01G272000 chr2D 73.231 325 64 9 1990 2306 199833206 199832897 2.310000e-16 97.1
36 TraesCS4D01G272000 chr2D 75.401 187 24 16 363 540 195706286 195706113 1.400000e-08 71.3
37 TraesCS4D01G272000 chr3A 78.169 142 14 15 408 539 742036817 742036683 1.080000e-09 75.0
38 TraesCS4D01G272000 chr3A 84.286 70 11 0 2227 2296 710447066 710447135 5.030000e-08 69.4
39 TraesCS4D01G272000 chr3D 74.093 193 37 13 353 542 565823816 565823634 1.810000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G272000 chr4D 442434183 442436998 2815 False 5201.00 5201 100.0000 1 2816 1 chr4D.!!$F1 2815
1 TraesCS4D01G272000 chr4D 379345771 379346444 673 True 558.00 558 82.7990 20 657 1 chr4D.!!$R1 637
2 TraesCS4D01G272000 chr4A 24911175 24912436 1261 True 1977.00 1977 94.8560 656 1929 1 chr4A.!!$R1 1273
3 TraesCS4D01G272000 chr4B 550520355 550522335 1980 False 570.52 1964 95.1848 656 2808 5 chr4B.!!$F2 2152
4 TraesCS4D01G272000 chr1A 548224628 548225321 693 True 490.00 490 80.6770 1 659 1 chr1A.!!$R1 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
786 967 1.026718 GGTGTGCGCTGCTATCCTTT 61.027 55.0 9.73 0.0 0.0 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2206 2396 0.168788 ATTTGACATTGGTGCTCGCG 59.831 50.0 0.0 0.0 0.0 5.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
488 552 6.129179 ACCCAAGAAGAAACAAGAAATCTGA 58.871 36.000 0.00 0.00 0.00 3.27
562 627 4.021368 GGATACTGTAGCACGGTAATCCAT 60.021 45.833 5.36 6.26 42.61 3.41
599 664 4.897856 GTCGCTCGCTCGCTCCTC 62.898 72.222 0.00 0.00 0.00 3.71
628 693 1.591248 CGTTCCTTCGACAATTTGCG 58.409 50.000 0.00 1.89 0.00 4.85
634 699 2.159448 CCTTCGACAATTTGCGGCAATA 60.159 45.455 17.19 8.05 0.00 1.90
771 952 3.503800 ATGCTATCTGATGCATGGTGT 57.496 42.857 19.58 4.12 46.58 4.16
772 953 2.567985 TGCTATCTGATGCATGGTGTG 58.432 47.619 2.46 0.00 33.94 3.82
786 967 1.026718 GGTGTGCGCTGCTATCCTTT 61.027 55.000 9.73 0.00 0.00 3.11
922 1105 3.866379 ATCACAGCTTTGGCCGGCA 62.866 57.895 30.85 12.04 39.73 5.69
960 1143 2.103373 GCCCCATATAGCGAGATCAGA 58.897 52.381 0.00 0.00 0.00 3.27
961 1144 2.497675 GCCCCATATAGCGAGATCAGAA 59.502 50.000 0.00 0.00 0.00 3.02
962 1145 3.133721 GCCCCATATAGCGAGATCAGAAT 59.866 47.826 0.00 0.00 0.00 2.40
963 1146 4.739137 GCCCCATATAGCGAGATCAGAATC 60.739 50.000 0.00 0.00 0.00 2.52
964 1147 4.403752 CCCCATATAGCGAGATCAGAATCA 59.596 45.833 0.00 0.00 34.07 2.57
965 1148 5.451659 CCCCATATAGCGAGATCAGAATCAG 60.452 48.000 0.00 0.00 34.07 2.90
966 1149 5.359292 CCCATATAGCGAGATCAGAATCAGA 59.641 44.000 0.00 0.00 34.07 3.27
1131 1321 1.997311 CCAGATCCTCCAGTGGCCA 60.997 63.158 0.00 0.00 0.00 5.36
1135 1325 2.303549 GATCCTCCAGTGGCCACTCG 62.304 65.000 35.79 29.32 40.20 4.18
1329 1519 4.467084 CCCAGCCGCGCCTTTCTA 62.467 66.667 0.00 0.00 0.00 2.10
1341 1531 2.223294 CGCCTTTCTAGAGTACGACCTG 60.223 54.545 0.00 0.00 0.00 4.00
1885 2075 5.714333 ACATACATTTGTAAGATGCACCCAA 59.286 36.000 0.00 0.00 33.76 4.12
1950 2140 7.751768 ATCATTACCAATCTAAAGCTAAGCC 57.248 36.000 0.00 0.00 0.00 4.35
1954 2144 5.904362 ACCAATCTAAAGCTAAGCCAAAG 57.096 39.130 0.00 0.00 0.00 2.77
1955 2145 5.325239 ACCAATCTAAAGCTAAGCCAAAGT 58.675 37.500 0.00 0.00 0.00 2.66
1956 2146 5.183904 ACCAATCTAAAGCTAAGCCAAAGTG 59.816 40.000 0.00 0.00 0.00 3.16
1957 2147 5.183904 CCAATCTAAAGCTAAGCCAAAGTGT 59.816 40.000 0.00 0.00 0.00 3.55
1958 2148 6.374333 CCAATCTAAAGCTAAGCCAAAGTGTA 59.626 38.462 0.00 0.00 0.00 2.90
1959 2149 7.067494 CCAATCTAAAGCTAAGCCAAAGTGTAT 59.933 37.037 0.00 0.00 0.00 2.29
1960 2150 7.793927 ATCTAAAGCTAAGCCAAAGTGTATC 57.206 36.000 0.00 0.00 0.00 2.24
1965 2155 4.003648 GCTAAGCCAAAGTGTATCTGTGT 58.996 43.478 0.00 0.00 29.70 3.72
1986 2176 4.136517 TCGAAAACCGAAAATAGTGTGC 57.863 40.909 0.00 0.00 45.43 4.57
1987 2177 3.810941 TCGAAAACCGAAAATAGTGTGCT 59.189 39.130 0.00 0.00 45.43 4.40
1989 2179 4.973663 CGAAAACCGAAAATAGTGTGCTTT 59.026 37.500 0.00 0.00 41.76 3.51
1990 2180 5.457473 CGAAAACCGAAAATAGTGTGCTTTT 59.543 36.000 0.00 0.00 41.76 2.27
1991 2181 6.020201 CGAAAACCGAAAATAGTGTGCTTTTT 60.020 34.615 0.00 0.00 41.76 1.94
2017 2207 9.724839 TTTAACACAGTACAATTAAAGTTGCTC 57.275 29.630 0.00 0.00 32.32 4.26
2018 2208 6.935741 ACACAGTACAATTAAAGTTGCTCA 57.064 33.333 0.00 0.00 32.32 4.26
2019 2209 6.725246 ACACAGTACAATTAAAGTTGCTCAC 58.275 36.000 0.00 0.00 32.32 3.51
2020 2210 6.317642 ACACAGTACAATTAAAGTTGCTCACA 59.682 34.615 0.00 0.00 32.32 3.58
2021 2211 7.013274 ACACAGTACAATTAAAGTTGCTCACAT 59.987 33.333 0.00 0.00 32.32 3.21
2022 2212 8.503196 CACAGTACAATTAAAGTTGCTCACATA 58.497 33.333 0.00 0.00 32.32 2.29
2023 2213 9.231297 ACAGTACAATTAAAGTTGCTCACATAT 57.769 29.630 0.00 0.00 32.32 1.78
2026 2216 9.632969 GTACAATTAAAGTTGCTCACATATACG 57.367 33.333 0.00 0.00 32.32 3.06
2027 2217 8.487313 ACAATTAAAGTTGCTCACATATACGA 57.513 30.769 0.00 0.00 32.32 3.43
2028 2218 8.604035 ACAATTAAAGTTGCTCACATATACGAG 58.396 33.333 0.00 0.00 32.32 4.18
2029 2219 8.604035 CAATTAAAGTTGCTCACATATACGAGT 58.396 33.333 0.00 0.00 0.00 4.18
2030 2220 9.811995 AATTAAAGTTGCTCACATATACGAGTA 57.188 29.630 0.00 0.00 0.00 2.59
2031 2221 9.982651 ATTAAAGTTGCTCACATATACGAGTAT 57.017 29.630 0.00 1.16 0.00 2.12
2032 2222 7.700322 AAAGTTGCTCACATATACGAGTATG 57.300 36.000 6.04 9.27 37.92 2.39
2033 2223 5.223382 AGTTGCTCACATATACGAGTATGC 58.777 41.667 6.04 1.02 35.87 3.14
2034 2224 4.846779 TGCTCACATATACGAGTATGCA 57.153 40.909 6.04 0.00 35.87 3.96
2035 2225 4.546570 TGCTCACATATACGAGTATGCAC 58.453 43.478 6.04 0.00 35.87 4.57
2036 2226 4.278419 TGCTCACATATACGAGTATGCACT 59.722 41.667 6.04 0.00 35.87 4.40
2037 2227 4.854291 GCTCACATATACGAGTATGCACTC 59.146 45.833 6.04 0.00 46.60 3.51
2044 2234 2.584608 AGTATGCACTCACGCCCC 59.415 61.111 0.00 0.00 0.00 5.80
2045 2235 1.990060 AGTATGCACTCACGCCCCT 60.990 57.895 0.00 0.00 0.00 4.79
2046 2236 1.815421 GTATGCACTCACGCCCCTG 60.815 63.158 0.00 0.00 0.00 4.45
2047 2237 1.987306 TATGCACTCACGCCCCTGA 60.987 57.895 0.00 0.00 0.00 3.86
2048 2238 1.549243 TATGCACTCACGCCCCTGAA 61.549 55.000 0.00 0.00 0.00 3.02
2049 2239 3.050275 GCACTCACGCCCCTGAAC 61.050 66.667 0.00 0.00 0.00 3.18
2050 2240 2.738521 CACTCACGCCCCTGAACG 60.739 66.667 0.00 0.00 0.00 3.95
2051 2241 4.681978 ACTCACGCCCCTGAACGC 62.682 66.667 0.00 0.00 0.00 4.84
2052 2242 4.680237 CTCACGCCCCTGAACGCA 62.680 66.667 0.00 0.00 0.00 5.24
2053 2243 4.980805 TCACGCCCCTGAACGCAC 62.981 66.667 0.00 0.00 0.00 5.34
2069 2259 3.918977 ACGCGCACCCACACACTA 61.919 61.111 5.73 0.00 0.00 2.74
2070 2260 3.411351 CGCGCACCCACACACTAC 61.411 66.667 8.75 0.00 0.00 2.73
2071 2261 3.047877 GCGCACCCACACACTACC 61.048 66.667 0.30 0.00 0.00 3.18
2072 2262 2.358247 CGCACCCACACACTACCC 60.358 66.667 0.00 0.00 0.00 3.69
2073 2263 2.033602 GCACCCACACACTACCCC 59.966 66.667 0.00 0.00 0.00 4.95
2074 2264 2.526046 GCACCCACACACTACCCCT 61.526 63.158 0.00 0.00 0.00 4.79
2075 2265 1.196104 GCACCCACACACTACCCCTA 61.196 60.000 0.00 0.00 0.00 3.53
2076 2266 1.580059 CACCCACACACTACCCCTAT 58.420 55.000 0.00 0.00 0.00 2.57
2077 2267 1.209504 CACCCACACACTACCCCTATG 59.790 57.143 0.00 0.00 0.00 2.23
2078 2268 1.079825 ACCCACACACTACCCCTATGA 59.920 52.381 0.00 0.00 0.00 2.15
2079 2269 1.762957 CCCACACACTACCCCTATGAG 59.237 57.143 0.00 0.00 0.00 2.90
2080 2270 1.139058 CCACACACTACCCCTATGAGC 59.861 57.143 0.00 0.00 0.00 4.26
2081 2271 1.831106 CACACACTACCCCTATGAGCA 59.169 52.381 0.00 0.00 0.00 4.26
2082 2272 2.435805 CACACACTACCCCTATGAGCAT 59.564 50.000 0.00 0.00 0.00 3.79
2083 2273 2.700897 ACACACTACCCCTATGAGCATC 59.299 50.000 0.00 0.00 0.00 3.91
2084 2274 2.968574 CACACTACCCCTATGAGCATCT 59.031 50.000 0.00 0.00 34.92 2.90
2085 2275 3.006323 CACACTACCCCTATGAGCATCTC 59.994 52.174 0.00 0.00 34.92 2.75
2086 2276 2.564947 CACTACCCCTATGAGCATCTCC 59.435 54.545 0.00 0.00 34.92 3.71
2087 2277 1.821753 CTACCCCTATGAGCATCTCCG 59.178 57.143 0.00 0.00 34.92 4.63
2088 2278 0.188587 ACCCCTATGAGCATCTCCGA 59.811 55.000 0.00 0.00 34.92 4.55
2089 2279 0.894141 CCCCTATGAGCATCTCCGAG 59.106 60.000 0.00 0.00 34.92 4.63
2090 2280 1.548809 CCCCTATGAGCATCTCCGAGA 60.549 57.143 0.00 0.00 34.92 4.04
2091 2281 1.818060 CCCTATGAGCATCTCCGAGAG 59.182 57.143 4.07 0.00 34.92 3.20
2092 2282 2.554124 CCCTATGAGCATCTCCGAGAGA 60.554 54.545 4.07 6.14 43.20 3.10
2093 2283 2.487762 CCTATGAGCATCTCCGAGAGAC 59.512 54.545 4.07 0.00 41.76 3.36
2094 2284 2.363306 ATGAGCATCTCCGAGAGACT 57.637 50.000 4.07 3.60 41.76 3.24
2095 2285 1.387539 TGAGCATCTCCGAGAGACTG 58.612 55.000 4.07 0.00 41.76 3.51
2096 2286 1.065126 TGAGCATCTCCGAGAGACTGA 60.065 52.381 4.07 0.00 41.76 3.41
2097 2287 1.603802 GAGCATCTCCGAGAGACTGAG 59.396 57.143 4.07 0.00 41.76 3.35
2098 2288 1.064758 AGCATCTCCGAGAGACTGAGT 60.065 52.381 4.07 0.00 41.76 3.41
2099 2289 1.748493 GCATCTCCGAGAGACTGAGTT 59.252 52.381 4.07 0.00 41.76 3.01
2100 2290 2.479389 GCATCTCCGAGAGACTGAGTTG 60.479 54.545 4.07 0.00 41.76 3.16
2101 2291 1.827681 TCTCCGAGAGACTGAGTTGG 58.172 55.000 0.00 0.00 33.35 3.77
2102 2292 1.351350 TCTCCGAGAGACTGAGTTGGA 59.649 52.381 0.00 0.00 33.35 3.53
2103 2293 2.163509 CTCCGAGAGACTGAGTTGGAA 58.836 52.381 0.00 0.00 0.00 3.53
2104 2294 2.757868 CTCCGAGAGACTGAGTTGGAAT 59.242 50.000 0.00 0.00 0.00 3.01
2105 2295 3.948473 CTCCGAGAGACTGAGTTGGAATA 59.052 47.826 0.00 0.00 0.00 1.75
2106 2296 3.948473 TCCGAGAGACTGAGTTGGAATAG 59.052 47.826 0.00 0.00 0.00 1.73
2107 2297 3.490078 CCGAGAGACTGAGTTGGAATAGC 60.490 52.174 0.00 0.00 0.00 2.97
2108 2298 3.701241 GAGAGACTGAGTTGGAATAGCG 58.299 50.000 0.00 0.00 0.00 4.26
2109 2299 3.093057 AGAGACTGAGTTGGAATAGCGT 58.907 45.455 0.00 0.00 0.00 5.07
2110 2300 3.129638 AGAGACTGAGTTGGAATAGCGTC 59.870 47.826 0.00 0.00 0.00 5.19
2111 2301 3.093057 AGACTGAGTTGGAATAGCGTCT 58.907 45.455 0.00 0.00 0.00 4.18
2112 2302 3.511934 AGACTGAGTTGGAATAGCGTCTT 59.488 43.478 0.00 0.00 0.00 3.01
2113 2303 3.589988 ACTGAGTTGGAATAGCGTCTTG 58.410 45.455 0.00 0.00 0.00 3.02
2114 2304 3.258372 ACTGAGTTGGAATAGCGTCTTGA 59.742 43.478 0.00 0.00 0.00 3.02
2115 2305 3.849911 TGAGTTGGAATAGCGTCTTGAG 58.150 45.455 0.00 0.00 0.00 3.02
2116 2306 3.509967 TGAGTTGGAATAGCGTCTTGAGA 59.490 43.478 0.00 0.00 0.00 3.27
2117 2307 4.160439 TGAGTTGGAATAGCGTCTTGAGAT 59.840 41.667 0.00 0.00 0.00 2.75
2118 2308 5.091261 AGTTGGAATAGCGTCTTGAGATT 57.909 39.130 0.00 0.00 0.00 2.40
2119 2309 5.112686 AGTTGGAATAGCGTCTTGAGATTC 58.887 41.667 0.00 0.00 0.00 2.52
2120 2310 5.105146 AGTTGGAATAGCGTCTTGAGATTCT 60.105 40.000 0.00 0.00 0.00 2.40
2121 2311 6.096987 AGTTGGAATAGCGTCTTGAGATTCTA 59.903 38.462 0.00 0.00 0.00 2.10
2122 2312 5.833082 TGGAATAGCGTCTTGAGATTCTAC 58.167 41.667 0.00 0.00 0.00 2.59
2123 2313 5.359860 TGGAATAGCGTCTTGAGATTCTACA 59.640 40.000 0.00 0.00 0.00 2.74
2124 2314 5.688176 GGAATAGCGTCTTGAGATTCTACAC 59.312 44.000 0.00 0.00 0.00 2.90
2125 2315 3.512033 AGCGTCTTGAGATTCTACACC 57.488 47.619 0.00 0.00 0.00 4.16
2126 2316 2.826128 AGCGTCTTGAGATTCTACACCA 59.174 45.455 0.00 0.00 0.00 4.17
2127 2317 3.449018 AGCGTCTTGAGATTCTACACCAT 59.551 43.478 0.00 0.00 0.00 3.55
2128 2318 4.645136 AGCGTCTTGAGATTCTACACCATA 59.355 41.667 0.00 0.00 0.00 2.74
2129 2319 4.979197 GCGTCTTGAGATTCTACACCATAG 59.021 45.833 0.00 0.00 0.00 2.23
2130 2320 5.221067 GCGTCTTGAGATTCTACACCATAGA 60.221 44.000 0.00 0.00 0.00 1.98
2131 2321 6.202937 CGTCTTGAGATTCTACACCATAGAC 58.797 44.000 0.00 0.00 0.00 2.59
2132 2322 6.202937 GTCTTGAGATTCTACACCATAGACG 58.797 44.000 0.00 0.00 0.00 4.18
2133 2323 4.569761 TGAGATTCTACACCATAGACGC 57.430 45.455 0.00 0.00 0.00 5.19
2134 2324 3.318275 TGAGATTCTACACCATAGACGCC 59.682 47.826 0.00 0.00 0.00 5.68
2135 2325 3.567397 AGATTCTACACCATAGACGCCT 58.433 45.455 0.00 0.00 0.00 5.52
2136 2326 3.570550 AGATTCTACACCATAGACGCCTC 59.429 47.826 0.00 0.00 0.00 4.70
2137 2327 1.306148 TCTACACCATAGACGCCTCG 58.694 55.000 0.00 0.00 0.00 4.63
2138 2328 0.317938 CTACACCATAGACGCCTCGC 60.318 60.000 0.00 0.00 0.00 5.03
2139 2329 1.033202 TACACCATAGACGCCTCGCA 61.033 55.000 0.00 0.00 0.00 5.10
2140 2330 1.589993 CACCATAGACGCCTCGCAG 60.590 63.158 0.00 0.00 0.00 5.18
2141 2331 2.052690 ACCATAGACGCCTCGCAGT 61.053 57.895 0.00 0.00 0.00 4.40
2142 2332 1.299468 CCATAGACGCCTCGCAGTC 60.299 63.158 0.00 0.00 34.33 3.51
2143 2333 1.433471 CATAGACGCCTCGCAGTCA 59.567 57.895 9.89 0.40 35.68 3.41
2144 2334 0.179137 CATAGACGCCTCGCAGTCAA 60.179 55.000 9.89 0.00 35.68 3.18
2145 2335 0.179134 ATAGACGCCTCGCAGTCAAC 60.179 55.000 9.89 0.00 35.68 3.18
2146 2336 2.523184 TAGACGCCTCGCAGTCAACG 62.523 60.000 9.89 0.00 35.68 4.10
2147 2337 3.891586 GACGCCTCGCAGTCAACGA 62.892 63.158 0.00 0.00 38.02 3.85
2148 2338 2.507102 CGCCTCGCAGTCAACGAT 60.507 61.111 0.00 0.00 39.12 3.73
2149 2339 1.226575 CGCCTCGCAGTCAACGATA 60.227 57.895 0.00 0.00 39.12 2.92
2150 2340 0.800683 CGCCTCGCAGTCAACGATAA 60.801 55.000 0.00 0.00 39.12 1.75
2151 2341 0.645868 GCCTCGCAGTCAACGATAAC 59.354 55.000 0.00 0.00 39.12 1.89
2152 2342 0.914551 CCTCGCAGTCAACGATAACG 59.085 55.000 0.00 0.00 45.75 3.18
2166 2356 4.092771 CGATAACGTCTTCTCCAACTGA 57.907 45.455 0.00 0.00 34.56 3.41
2167 2357 4.482386 CGATAACGTCTTCTCCAACTGAA 58.518 43.478 0.00 0.00 34.56 3.02
2168 2358 4.323868 CGATAACGTCTTCTCCAACTGAAC 59.676 45.833 0.00 0.00 34.56 3.18
2169 2359 3.536956 AACGTCTTCTCCAACTGAACA 57.463 42.857 0.00 0.00 0.00 3.18
2170 2360 3.536956 ACGTCTTCTCCAACTGAACAA 57.463 42.857 0.00 0.00 0.00 2.83
2171 2361 3.869065 ACGTCTTCTCCAACTGAACAAA 58.131 40.909 0.00 0.00 0.00 2.83
2172 2362 3.621715 ACGTCTTCTCCAACTGAACAAAC 59.378 43.478 0.00 0.00 0.00 2.93
2173 2363 3.621268 CGTCTTCTCCAACTGAACAAACA 59.379 43.478 0.00 0.00 0.00 2.83
2174 2364 4.273480 CGTCTTCTCCAACTGAACAAACAT 59.727 41.667 0.00 0.00 0.00 2.71
2175 2365 5.559035 CGTCTTCTCCAACTGAACAAACATC 60.559 44.000 0.00 0.00 0.00 3.06
2176 2366 4.511454 TCTTCTCCAACTGAACAAACATCG 59.489 41.667 0.00 0.00 0.00 3.84
2177 2367 2.548057 TCTCCAACTGAACAAACATCGC 59.452 45.455 0.00 0.00 0.00 4.58
2178 2368 1.606668 TCCAACTGAACAAACATCGCC 59.393 47.619 0.00 0.00 0.00 5.54
2179 2369 1.336440 CCAACTGAACAAACATCGCCA 59.664 47.619 0.00 0.00 0.00 5.69
2180 2370 2.223688 CCAACTGAACAAACATCGCCAA 60.224 45.455 0.00 0.00 0.00 4.52
2181 2371 3.443037 CAACTGAACAAACATCGCCAAA 58.557 40.909 0.00 0.00 0.00 3.28
2182 2372 3.791973 ACTGAACAAACATCGCCAAAA 57.208 38.095 0.00 0.00 0.00 2.44
2183 2373 3.705604 ACTGAACAAACATCGCCAAAAG 58.294 40.909 0.00 0.00 0.00 2.27
2184 2374 3.130340 ACTGAACAAACATCGCCAAAAGT 59.870 39.130 0.00 0.00 0.00 2.66
2185 2375 3.701241 TGAACAAACATCGCCAAAAGTC 58.299 40.909 0.00 0.00 0.00 3.01
2186 2376 3.380004 TGAACAAACATCGCCAAAAGTCT 59.620 39.130 0.00 0.00 0.00 3.24
2187 2377 3.354089 ACAAACATCGCCAAAAGTCTG 57.646 42.857 0.00 0.00 0.00 3.51
2188 2378 2.948979 ACAAACATCGCCAAAAGTCTGA 59.051 40.909 0.00 0.00 0.00 3.27
2189 2379 3.380004 ACAAACATCGCCAAAAGTCTGAA 59.620 39.130 0.00 0.00 0.00 3.02
2190 2380 4.142271 ACAAACATCGCCAAAAGTCTGAAA 60.142 37.500 0.00 0.00 0.00 2.69
2191 2381 4.853924 AACATCGCCAAAAGTCTGAAAT 57.146 36.364 0.00 0.00 0.00 2.17
2192 2382 5.957842 AACATCGCCAAAAGTCTGAAATA 57.042 34.783 0.00 0.00 0.00 1.40
2193 2383 5.957842 ACATCGCCAAAAGTCTGAAATAA 57.042 34.783 0.00 0.00 0.00 1.40
2194 2384 6.325919 ACATCGCCAAAAGTCTGAAATAAA 57.674 33.333 0.00 0.00 0.00 1.40
2195 2385 6.924111 ACATCGCCAAAAGTCTGAAATAAAT 58.076 32.000 0.00 0.00 0.00 1.40
2196 2386 7.029563 ACATCGCCAAAAGTCTGAAATAAATC 58.970 34.615 0.00 0.00 0.00 2.17
2197 2387 5.949735 TCGCCAAAAGTCTGAAATAAATCC 58.050 37.500 0.00 0.00 0.00 3.01
2198 2388 5.475220 TCGCCAAAAGTCTGAAATAAATCCA 59.525 36.000 0.00 0.00 0.00 3.41
2199 2389 5.801947 CGCCAAAAGTCTGAAATAAATCCAG 59.198 40.000 0.00 0.00 0.00 3.86
2200 2390 6.349280 CGCCAAAAGTCTGAAATAAATCCAGA 60.349 38.462 0.00 0.00 34.87 3.86
2201 2391 7.378181 GCCAAAAGTCTGAAATAAATCCAGAA 58.622 34.615 0.00 0.00 38.49 3.02
2202 2392 7.872483 GCCAAAAGTCTGAAATAAATCCAGAAA 59.128 33.333 0.00 0.00 38.49 2.52
2203 2393 9.933723 CCAAAAGTCTGAAATAAATCCAGAAAT 57.066 29.630 0.00 0.00 38.49 2.17
2208 2398 8.398665 AGTCTGAAATAAATCCAGAAATAACGC 58.601 33.333 0.00 0.00 38.49 4.84
2209 2399 7.373441 GTCTGAAATAAATCCAGAAATAACGCG 59.627 37.037 3.53 3.53 38.49 6.01
2210 2400 7.279090 TCTGAAATAAATCCAGAAATAACGCGA 59.721 33.333 15.93 0.00 34.38 5.87
2211 2401 7.406553 TGAAATAAATCCAGAAATAACGCGAG 58.593 34.615 15.93 0.00 0.00 5.03
2212 2402 3.675467 AAATCCAGAAATAACGCGAGC 57.325 42.857 15.93 0.00 0.00 5.03
2213 2403 2.309528 ATCCAGAAATAACGCGAGCA 57.690 45.000 15.93 0.00 0.00 4.26
2214 2404 1.355971 TCCAGAAATAACGCGAGCAC 58.644 50.000 15.93 0.00 0.00 4.40
2215 2405 0.373716 CCAGAAATAACGCGAGCACC 59.626 55.000 15.93 0.00 0.00 5.01
2216 2406 1.075542 CAGAAATAACGCGAGCACCA 58.924 50.000 15.93 0.00 0.00 4.17
2217 2407 1.463056 CAGAAATAACGCGAGCACCAA 59.537 47.619 15.93 0.00 0.00 3.67
2218 2408 2.095853 CAGAAATAACGCGAGCACCAAT 59.904 45.455 15.93 0.00 0.00 3.16
2219 2409 2.095853 AGAAATAACGCGAGCACCAATG 59.904 45.455 15.93 0.00 0.00 2.82
2220 2410 1.448985 AATAACGCGAGCACCAATGT 58.551 45.000 15.93 0.00 0.00 2.71
2221 2411 1.006832 ATAACGCGAGCACCAATGTC 58.993 50.000 15.93 0.00 0.00 3.06
2222 2412 0.319986 TAACGCGAGCACCAATGTCA 60.320 50.000 15.93 0.00 0.00 3.58
2223 2413 1.163420 AACGCGAGCACCAATGTCAA 61.163 50.000 15.93 0.00 0.00 3.18
2224 2414 1.163420 ACGCGAGCACCAATGTCAAA 61.163 50.000 15.93 0.00 0.00 2.69
2225 2415 0.168788 CGCGAGCACCAATGTCAAAT 59.831 50.000 0.00 0.00 0.00 2.32
2226 2416 1.791555 CGCGAGCACCAATGTCAAATC 60.792 52.381 0.00 0.00 0.00 2.17
2227 2417 1.470098 GCGAGCACCAATGTCAAATCT 59.530 47.619 0.00 0.00 0.00 2.40
2228 2418 2.677836 GCGAGCACCAATGTCAAATCTA 59.322 45.455 0.00 0.00 0.00 1.98
2229 2419 3.126858 GCGAGCACCAATGTCAAATCTAA 59.873 43.478 0.00 0.00 0.00 2.10
2230 2420 4.728882 GCGAGCACCAATGTCAAATCTAAG 60.729 45.833 0.00 0.00 0.00 2.18
2231 2421 4.631377 CGAGCACCAATGTCAAATCTAAGA 59.369 41.667 0.00 0.00 0.00 2.10
2232 2422 5.446473 CGAGCACCAATGTCAAATCTAAGAC 60.446 44.000 0.00 0.00 35.37 3.01
2233 2423 5.564550 AGCACCAATGTCAAATCTAAGACT 58.435 37.500 0.00 0.00 35.81 3.24
2234 2424 6.006449 AGCACCAATGTCAAATCTAAGACTT 58.994 36.000 0.00 0.00 35.81 3.01
2235 2425 6.072286 AGCACCAATGTCAAATCTAAGACTTG 60.072 38.462 0.00 0.00 35.81 3.16
2236 2426 6.072508 GCACCAATGTCAAATCTAAGACTTGA 60.073 38.462 0.00 0.00 35.81 3.02
2237 2427 7.522073 GCACCAATGTCAAATCTAAGACTTGAA 60.522 37.037 0.00 0.00 35.81 2.69
2238 2428 7.805071 CACCAATGTCAAATCTAAGACTTGAAC 59.195 37.037 0.00 0.00 35.81 3.18
2239 2429 7.040409 ACCAATGTCAAATCTAAGACTTGAACC 60.040 37.037 0.00 0.00 35.81 3.62
2240 2430 7.308435 CAATGTCAAATCTAAGACTTGAACCC 58.692 38.462 0.00 0.00 35.81 4.11
2241 2431 6.187727 TGTCAAATCTAAGACTTGAACCCT 57.812 37.500 0.00 0.00 35.81 4.34
2242 2432 5.997746 TGTCAAATCTAAGACTTGAACCCTG 59.002 40.000 0.00 0.00 35.81 4.45
2243 2433 5.998363 GTCAAATCTAAGACTTGAACCCTGT 59.002 40.000 0.00 0.00 31.21 4.00
2244 2434 6.486993 GTCAAATCTAAGACTTGAACCCTGTT 59.513 38.462 0.00 0.00 31.21 3.16
2245 2435 6.486657 TCAAATCTAAGACTTGAACCCTGTTG 59.513 38.462 0.00 0.00 0.00 3.33
2246 2436 4.351874 TCTAAGACTTGAACCCTGTTGG 57.648 45.455 0.00 0.00 41.37 3.77
2259 2449 3.644966 CCTGTTGGGCTAGGAATACAA 57.355 47.619 0.00 0.00 36.11 2.41
2260 2450 3.279434 CCTGTTGGGCTAGGAATACAAC 58.721 50.000 0.00 0.00 41.18 3.32
2261 2451 3.054361 CCTGTTGGGCTAGGAATACAACT 60.054 47.826 0.00 0.00 41.32 3.16
2262 2452 3.941483 CTGTTGGGCTAGGAATACAACTG 59.059 47.826 0.00 0.00 41.32 3.16
2263 2453 3.329520 TGTTGGGCTAGGAATACAACTGT 59.670 43.478 0.00 0.00 41.32 3.55
2264 2454 3.906720 TGGGCTAGGAATACAACTGTC 57.093 47.619 0.00 0.00 0.00 3.51
2265 2455 2.504175 TGGGCTAGGAATACAACTGTCC 59.496 50.000 0.00 0.00 0.00 4.02
2266 2456 2.772515 GGGCTAGGAATACAACTGTCCT 59.227 50.000 0.00 0.00 44.17 3.85
2267 2457 3.200165 GGGCTAGGAATACAACTGTCCTT 59.800 47.826 0.00 0.00 42.00 3.36
2268 2458 4.443621 GGCTAGGAATACAACTGTCCTTC 58.556 47.826 0.00 0.00 42.00 3.46
2276 2466 6.884836 GGAATACAACTGTCCTTCTAACCATT 59.115 38.462 0.00 0.00 0.00 3.16
2285 2475 4.455877 GTCCTTCTAACCATTCAACCACAG 59.544 45.833 0.00 0.00 0.00 3.66
2327 2517 9.950680 AAAATTACAACATGTTTGACTACTCTG 57.049 29.630 8.77 0.00 0.00 3.35
2345 2535 4.159557 CTCTGGGGAAAGGGAATGAAAAA 58.840 43.478 0.00 0.00 0.00 1.94
2354 2544 9.739276 GGGAAAGGGAATGAAAAATAGAAAATT 57.261 29.630 0.00 0.00 0.00 1.82
2400 2590 9.545105 TCAATACAAAAGTTCAAATTGAAGCAT 57.455 25.926 8.88 0.00 37.00 3.79
2415 2605 7.677454 ATTGAAGCATCTATAATCGCATCAA 57.323 32.000 0.00 0.00 43.55 2.57
2422 2612 6.146837 GCATCTATAATCGCATCAACTGAGTT 59.853 38.462 0.00 0.00 0.00 3.01
2431 2621 6.370593 TCGCATCAACTGAGTTTCATTTTAC 58.629 36.000 0.00 0.00 0.00 2.01
2441 2631 8.908903 ACTGAGTTTCATTTTACAATAACCACA 58.091 29.630 0.00 0.00 0.00 4.17
2452 2642 9.699703 TTTTACAATAACCACAATTTCCTTAGC 57.300 29.630 0.00 0.00 0.00 3.09
2457 2647 9.218440 CAATAACCACAATTTCCTTAGCAAATT 57.782 29.630 0.00 0.00 34.42 1.82
2468 2658 2.570415 TAGCAAATTGTCACCCCGAA 57.430 45.000 0.00 0.00 0.00 4.30
2481 2671 4.941873 GTCACCCCGAAGAAGAAAATGTAT 59.058 41.667 0.00 0.00 0.00 2.29
2506 2699 1.749258 GCCTCTAAAACGCCCCAGG 60.749 63.158 0.00 0.00 0.00 4.45
2507 2700 1.683441 CCTCTAAAACGCCCCAGGT 59.317 57.895 0.00 0.00 0.00 4.00
2549 2742 2.169769 GACACAAATCTCGGATACCCCA 59.830 50.000 0.00 0.00 34.14 4.96
2556 2749 1.062428 TCTCGGATACCCCAATGAGGT 60.062 52.381 0.00 0.00 41.64 3.85
2564 2757 0.176680 CCCCAATGAGGTCGAGACTG 59.823 60.000 3.09 0.00 34.66 3.51
2575 2768 3.640029 AGGTCGAGACTGTCCAAACTTTA 59.360 43.478 3.76 0.00 0.00 1.85
2580 2773 4.566987 GAGACTGTCCAAACTTTATCGGT 58.433 43.478 3.76 0.00 0.00 4.69
2588 2781 4.994852 TCCAAACTTTATCGGTCAGAACTG 59.005 41.667 0.00 0.00 0.00 3.16
2592 2785 4.745649 ACTTTATCGGTCAGAACTGTAGC 58.254 43.478 1.73 0.00 33.20 3.58
2601 2794 1.205893 CAGAACTGTAGCTGGAGGACC 59.794 57.143 0.00 0.00 0.00 4.46
2602 2795 1.203187 AGAACTGTAGCTGGAGGACCA 60.203 52.381 0.00 0.00 44.76 4.02
2604 2797 1.270907 ACTGTAGCTGGAGGACCAAG 58.729 55.000 0.00 0.00 46.32 3.61
2613 2806 0.537653 GGAGGACCAAGTAGGACAGC 59.462 60.000 0.00 0.00 41.22 4.40
2615 2808 1.623811 GAGGACCAAGTAGGACAGCAA 59.376 52.381 0.00 0.00 41.22 3.91
2617 2810 1.623811 GGACCAAGTAGGACAGCAAGA 59.376 52.381 0.00 0.00 41.22 3.02
2618 2811 2.613223 GGACCAAGTAGGACAGCAAGAC 60.613 54.545 0.00 0.00 41.22 3.01
2632 2825 1.197721 GCAAGACCGAGACAAACATGG 59.802 52.381 0.00 0.00 0.00 3.66
2634 2827 3.138304 CAAGACCGAGACAAACATGGAA 58.862 45.455 0.00 0.00 0.00 3.53
2648 2841 1.268352 CATGGAAAAGAAAACGCCGGA 59.732 47.619 5.05 0.00 0.00 5.14
2671 2864 2.897326 TCGGAGAATCAGACCTGTTTCA 59.103 45.455 17.87 1.14 40.13 2.69
2674 2867 3.999663 GGAGAATCAGACCTGTTTCACAG 59.000 47.826 17.87 0.00 40.98 3.66
2681 2874 0.535102 ACCTGTTTCACAGCCTTCCG 60.535 55.000 0.00 0.00 44.63 4.30
2708 2901 1.604185 CGAGGAAGCATCTCCGAATCC 60.604 57.143 0.00 0.00 40.75 3.01
2735 2928 2.769095 AGGCAGAGAGACCTTATTCCAC 59.231 50.000 0.00 0.00 29.74 4.02
2740 2933 0.529992 GAGACCTTATTCCACGCCCG 60.530 60.000 0.00 0.00 0.00 6.13
2741 2934 1.523032 GACCTTATTCCACGCCCGG 60.523 63.158 0.00 0.00 0.00 5.73
2742 2935 2.900337 CCTTATTCCACGCCCGGC 60.900 66.667 0.00 0.00 0.00 6.13
2759 2952 2.107750 CGGCACCATCATCTCGCT 59.892 61.111 0.00 0.00 0.00 4.93
2760 2953 2.242572 CGGCACCATCATCTCGCTG 61.243 63.158 0.00 0.00 0.00 5.18
2764 2957 1.145598 ACCATCATCTCGCTGCCAG 59.854 57.895 0.00 0.00 0.00 4.85
2812 3005 6.749036 ATTTCTAACCCTACCACTATCAGG 57.251 41.667 0.00 0.00 0.00 3.86
2813 3006 5.476950 TTCTAACCCTACCACTATCAGGA 57.523 43.478 0.00 0.00 0.00 3.86
2814 3007 5.681494 TCTAACCCTACCACTATCAGGAT 57.319 43.478 0.00 0.00 0.00 3.24
2815 3008 6.791847 TCTAACCCTACCACTATCAGGATA 57.208 41.667 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
503 568 1.722851 TCTAGAAGGTTCCCTGGACCT 59.277 52.381 1.31 1.31 32.13 3.85
532 597 2.547826 GTGCTACAGTATCCCGGTTTC 58.452 52.381 0.00 0.00 0.00 2.78
599 664 1.291877 CGAAGGAACGCACAGGGAAG 61.292 60.000 0.00 0.00 0.00 3.46
628 693 6.743575 ATATCCTATTTGACGCTTATTGCC 57.256 37.500 0.00 0.00 38.78 4.52
634 699 4.039973 TCCGGAATATCCTATTTGACGCTT 59.960 41.667 0.00 0.00 33.30 4.68
922 1105 1.078848 CTTAGCTCTTGCACCGCCT 60.079 57.895 0.00 0.00 42.74 5.52
960 1143 3.082579 GCCGGCCTCTCGTCTGATT 62.083 63.158 18.11 0.00 0.00 2.57
961 1144 2.626255 TAGCCGGCCTCTCGTCTGAT 62.626 60.000 26.15 1.43 0.00 2.90
962 1145 3.339738 TAGCCGGCCTCTCGTCTGA 62.340 63.158 26.15 0.00 0.00 3.27
963 1146 2.829003 TAGCCGGCCTCTCGTCTG 60.829 66.667 26.15 0.00 0.00 3.51
964 1147 2.517402 CTAGCCGGCCTCTCGTCT 60.517 66.667 26.15 3.86 0.00 4.18
965 1148 3.597728 CCTAGCCGGCCTCTCGTC 61.598 72.222 26.15 0.00 0.00 4.20
966 1149 4.444081 ACCTAGCCGGCCTCTCGT 62.444 66.667 26.15 9.78 35.61 4.18
1326 1516 0.463295 CGGCCAGGTCGTACTCTAGA 60.463 60.000 4.87 0.00 0.00 2.43
1329 1519 2.045131 GTCGGCCAGGTCGTACTCT 61.045 63.158 14.52 0.00 30.45 3.24
1713 1903 3.530910 AAGGAGGGCAACGACGGTG 62.531 63.158 8.96 8.96 37.60 4.94
1814 2004 8.352942 ACGCTGGATCCAGAAATAAATTAAATC 58.647 33.333 40.29 18.57 46.30 2.17
1885 2075 7.268586 GGACAAACTCATAGTCTCATACACAT 58.731 38.462 0.00 0.00 32.98 3.21
1929 2119 7.615757 ACTTTGGCTTAGCTTTAGATTGGTAAT 59.384 33.333 3.59 0.00 0.00 1.89
1950 2140 5.440685 GGTTTTCGACACAGATACACTTTG 58.559 41.667 0.00 0.00 33.09 2.77
1954 2144 3.311106 TCGGTTTTCGACACAGATACAC 58.689 45.455 0.00 0.00 43.74 2.90
1955 2145 3.646611 TCGGTTTTCGACACAGATACA 57.353 42.857 0.00 0.00 43.74 2.29
1991 2181 9.724839 GAGCAACTTTAATTGTACTGTGTTAAA 57.275 29.630 0.00 0.82 31.83 1.52
1992 2182 8.894731 TGAGCAACTTTAATTGTACTGTGTTAA 58.105 29.630 0.00 0.00 31.83 2.01
1995 2185 6.317642 TGTGAGCAACTTTAATTGTACTGTGT 59.682 34.615 0.00 0.00 31.83 3.72
1997 2187 6.935741 TGTGAGCAACTTTAATTGTACTGT 57.064 33.333 0.00 0.00 31.83 3.55
2000 2190 9.632969 CGTATATGTGAGCAACTTTAATTGTAC 57.367 33.333 0.00 0.00 31.83 2.90
2002 2192 8.487313 TCGTATATGTGAGCAACTTTAATTGT 57.513 30.769 0.00 0.00 31.83 2.71
2004 2194 8.718102 ACTCGTATATGTGAGCAACTTTAATT 57.282 30.769 1.11 0.00 35.61 1.40
2005 2195 9.982651 ATACTCGTATATGTGAGCAACTTTAAT 57.017 29.630 1.11 0.00 35.61 1.40
2006 2196 9.244799 CATACTCGTATATGTGAGCAACTTTAA 57.755 33.333 1.11 0.00 35.61 1.52
2008 2198 6.201044 GCATACTCGTATATGTGAGCAACTTT 59.799 38.462 1.11 0.00 35.36 2.66
2009 2199 5.692204 GCATACTCGTATATGTGAGCAACTT 59.308 40.000 1.11 0.00 35.36 2.66
2010 2200 5.221244 TGCATACTCGTATATGTGAGCAACT 60.221 40.000 1.11 0.00 35.36 3.16
2011 2201 4.982295 TGCATACTCGTATATGTGAGCAAC 59.018 41.667 1.11 0.00 35.36 4.17
2012 2202 4.982295 GTGCATACTCGTATATGTGAGCAA 59.018 41.667 0.00 0.00 35.36 3.91
2013 2203 4.278419 AGTGCATACTCGTATATGTGAGCA 59.722 41.667 0.00 5.55 35.36 4.26
2014 2204 4.799678 AGTGCATACTCGTATATGTGAGC 58.200 43.478 0.00 3.40 35.36 4.26
2027 2217 1.990060 AGGGGCGTGAGTGCATACT 60.990 57.895 0.00 0.00 40.66 2.12
2028 2218 1.815421 CAGGGGCGTGAGTGCATAC 60.815 63.158 0.00 0.00 36.28 2.39
2029 2219 1.549243 TTCAGGGGCGTGAGTGCATA 61.549 55.000 0.00 0.00 36.28 3.14
2030 2220 2.894257 TTCAGGGGCGTGAGTGCAT 61.894 57.895 0.00 0.00 36.28 3.96
2031 2221 3.555324 TTCAGGGGCGTGAGTGCA 61.555 61.111 0.00 0.00 36.28 4.57
2032 2222 3.050275 GTTCAGGGGCGTGAGTGC 61.050 66.667 0.00 0.00 0.00 4.40
2033 2223 2.738521 CGTTCAGGGGCGTGAGTG 60.739 66.667 0.00 0.00 0.00 3.51
2034 2224 4.681978 GCGTTCAGGGGCGTGAGT 62.682 66.667 0.00 0.00 0.00 3.41
2035 2225 4.680237 TGCGTTCAGGGGCGTGAG 62.680 66.667 0.00 0.00 0.00 3.51
2036 2226 4.980805 GTGCGTTCAGGGGCGTGA 62.981 66.667 0.00 0.00 0.00 4.35
2052 2242 3.918977 TAGTGTGTGGGTGCGCGT 61.919 61.111 8.43 0.00 0.00 6.01
2053 2243 3.411351 GTAGTGTGTGGGTGCGCG 61.411 66.667 0.00 0.00 0.00 6.86
2054 2244 3.047877 GGTAGTGTGTGGGTGCGC 61.048 66.667 0.00 0.00 0.00 6.09
2055 2245 2.358247 GGGTAGTGTGTGGGTGCG 60.358 66.667 0.00 0.00 0.00 5.34
2056 2246 1.196104 TAGGGGTAGTGTGTGGGTGC 61.196 60.000 0.00 0.00 0.00 5.01
2057 2247 1.209504 CATAGGGGTAGTGTGTGGGTG 59.790 57.143 0.00 0.00 0.00 4.61
2058 2248 1.079825 TCATAGGGGTAGTGTGTGGGT 59.920 52.381 0.00 0.00 0.00 4.51
2059 2249 1.762957 CTCATAGGGGTAGTGTGTGGG 59.237 57.143 0.00 0.00 0.00 4.61
2060 2250 1.139058 GCTCATAGGGGTAGTGTGTGG 59.861 57.143 0.00 0.00 0.00 4.17
2061 2251 1.831106 TGCTCATAGGGGTAGTGTGTG 59.169 52.381 0.00 0.00 0.00 3.82
2062 2252 2.247699 TGCTCATAGGGGTAGTGTGT 57.752 50.000 0.00 0.00 0.00 3.72
2063 2253 2.968574 AGATGCTCATAGGGGTAGTGTG 59.031 50.000 0.00 0.00 0.00 3.82
2064 2254 3.235200 GAGATGCTCATAGGGGTAGTGT 58.765 50.000 0.00 0.00 0.00 3.55
2065 2255 2.564947 GGAGATGCTCATAGGGGTAGTG 59.435 54.545 0.00 0.00 31.08 2.74
2066 2256 2.819726 CGGAGATGCTCATAGGGGTAGT 60.820 54.545 0.00 0.00 31.08 2.73
2067 2257 1.821753 CGGAGATGCTCATAGGGGTAG 59.178 57.143 0.00 0.00 31.08 3.18
2068 2258 1.427753 TCGGAGATGCTCATAGGGGTA 59.572 52.381 0.00 0.00 31.08 3.69
2069 2259 0.188587 TCGGAGATGCTCATAGGGGT 59.811 55.000 0.00 0.00 31.08 4.95
2070 2260 0.894141 CTCGGAGATGCTCATAGGGG 59.106 60.000 0.00 0.00 33.89 4.79
2071 2261 1.818060 CTCTCGGAGATGCTCATAGGG 59.182 57.143 8.39 0.00 33.89 3.53
2072 2262 2.487762 GTCTCTCGGAGATGCTCATAGG 59.512 54.545 8.39 0.00 40.98 2.57
2073 2263 3.189080 CAGTCTCTCGGAGATGCTCATAG 59.811 52.174 8.39 0.00 40.98 2.23
2074 2264 3.145286 CAGTCTCTCGGAGATGCTCATA 58.855 50.000 8.39 0.00 40.98 2.15
2075 2265 1.955778 CAGTCTCTCGGAGATGCTCAT 59.044 52.381 8.39 0.00 40.98 2.90
2076 2266 1.065126 TCAGTCTCTCGGAGATGCTCA 60.065 52.381 8.39 0.00 40.98 4.26
2077 2267 1.603802 CTCAGTCTCTCGGAGATGCTC 59.396 57.143 8.39 0.17 40.98 4.26
2078 2268 1.064758 ACTCAGTCTCTCGGAGATGCT 60.065 52.381 8.39 6.89 40.98 3.79
2079 2269 1.388547 ACTCAGTCTCTCGGAGATGC 58.611 55.000 8.39 4.64 40.98 3.91
2080 2270 2.098934 CCAACTCAGTCTCTCGGAGATG 59.901 54.545 8.39 4.48 40.98 2.90
2081 2271 2.025793 TCCAACTCAGTCTCTCGGAGAT 60.026 50.000 8.39 0.00 40.98 2.75
2082 2272 1.351350 TCCAACTCAGTCTCTCGGAGA 59.649 52.381 7.60 7.60 40.01 3.71
2083 2273 1.827681 TCCAACTCAGTCTCTCGGAG 58.172 55.000 0.00 0.00 42.53 4.63
2084 2274 2.287977 TTCCAACTCAGTCTCTCGGA 57.712 50.000 0.00 0.00 0.00 4.55
2085 2275 3.490078 GCTATTCCAACTCAGTCTCTCGG 60.490 52.174 0.00 0.00 0.00 4.63
2086 2276 3.701241 GCTATTCCAACTCAGTCTCTCG 58.299 50.000 0.00 0.00 0.00 4.04
2087 2277 3.129638 ACGCTATTCCAACTCAGTCTCTC 59.870 47.826 0.00 0.00 0.00 3.20
2088 2278 3.093057 ACGCTATTCCAACTCAGTCTCT 58.907 45.455 0.00 0.00 0.00 3.10
2089 2279 3.129638 AGACGCTATTCCAACTCAGTCTC 59.870 47.826 0.00 0.00 33.01 3.36
2090 2280 3.093057 AGACGCTATTCCAACTCAGTCT 58.907 45.455 0.00 0.00 33.47 3.24
2091 2281 3.512033 AGACGCTATTCCAACTCAGTC 57.488 47.619 0.00 0.00 0.00 3.51
2092 2282 3.258372 TCAAGACGCTATTCCAACTCAGT 59.742 43.478 0.00 0.00 0.00 3.41
2093 2283 3.849911 TCAAGACGCTATTCCAACTCAG 58.150 45.455 0.00 0.00 0.00 3.35
2094 2284 3.509967 TCTCAAGACGCTATTCCAACTCA 59.490 43.478 0.00 0.00 0.00 3.41
2095 2285 4.111375 TCTCAAGACGCTATTCCAACTC 57.889 45.455 0.00 0.00 0.00 3.01
2096 2286 4.744795 ATCTCAAGACGCTATTCCAACT 57.255 40.909 0.00 0.00 0.00 3.16
2097 2287 5.112686 AGAATCTCAAGACGCTATTCCAAC 58.887 41.667 0.00 0.00 0.00 3.77
2098 2288 5.344743 AGAATCTCAAGACGCTATTCCAA 57.655 39.130 0.00 0.00 0.00 3.53
2099 2289 5.359860 TGTAGAATCTCAAGACGCTATTCCA 59.640 40.000 0.00 0.00 0.00 3.53
2100 2290 5.688176 GTGTAGAATCTCAAGACGCTATTCC 59.312 44.000 0.00 0.00 0.00 3.01
2101 2291 5.688176 GGTGTAGAATCTCAAGACGCTATTC 59.312 44.000 0.00 0.00 0.00 1.75
2102 2292 5.127194 TGGTGTAGAATCTCAAGACGCTATT 59.873 40.000 0.00 0.00 0.00 1.73
2103 2293 4.645136 TGGTGTAGAATCTCAAGACGCTAT 59.355 41.667 0.00 0.00 0.00 2.97
2104 2294 4.014406 TGGTGTAGAATCTCAAGACGCTA 58.986 43.478 0.00 0.00 0.00 4.26
2105 2295 2.826128 TGGTGTAGAATCTCAAGACGCT 59.174 45.455 0.00 0.00 0.00 5.07
2106 2296 3.232213 TGGTGTAGAATCTCAAGACGC 57.768 47.619 0.00 0.00 0.00 5.19
2107 2297 6.202937 GTCTATGGTGTAGAATCTCAAGACG 58.797 44.000 0.00 0.00 0.00 4.18
2108 2298 6.202937 CGTCTATGGTGTAGAATCTCAAGAC 58.797 44.000 0.00 0.00 0.00 3.01
2109 2299 5.221067 GCGTCTATGGTGTAGAATCTCAAGA 60.221 44.000 0.00 0.00 0.00 3.02
2110 2300 4.979197 GCGTCTATGGTGTAGAATCTCAAG 59.021 45.833 0.00 0.00 0.00 3.02
2111 2301 4.202121 GGCGTCTATGGTGTAGAATCTCAA 60.202 45.833 0.00 0.00 0.00 3.02
2112 2302 3.318275 GGCGTCTATGGTGTAGAATCTCA 59.682 47.826 0.00 0.00 0.00 3.27
2113 2303 3.570550 AGGCGTCTATGGTGTAGAATCTC 59.429 47.826 0.00 0.00 0.00 2.75
2114 2304 3.567397 AGGCGTCTATGGTGTAGAATCT 58.433 45.455 0.00 0.00 0.00 2.40
2115 2305 3.609644 CGAGGCGTCTATGGTGTAGAATC 60.610 52.174 4.69 0.00 0.00 2.52
2116 2306 2.293677 CGAGGCGTCTATGGTGTAGAAT 59.706 50.000 4.69 0.00 0.00 2.40
2117 2307 1.674441 CGAGGCGTCTATGGTGTAGAA 59.326 52.381 4.69 0.00 0.00 2.10
2118 2308 1.306148 CGAGGCGTCTATGGTGTAGA 58.694 55.000 4.69 0.00 0.00 2.59
2119 2309 0.317938 GCGAGGCGTCTATGGTGTAG 60.318 60.000 4.69 0.00 0.00 2.74
2120 2310 1.033202 TGCGAGGCGTCTATGGTGTA 61.033 55.000 4.69 0.00 0.00 2.90
2121 2311 2.284798 CTGCGAGGCGTCTATGGTGT 62.285 60.000 4.69 0.00 0.00 4.16
2122 2312 1.589993 CTGCGAGGCGTCTATGGTG 60.590 63.158 4.69 0.00 0.00 4.17
2123 2313 2.005960 GACTGCGAGGCGTCTATGGT 62.006 60.000 4.69 0.00 32.57 3.55
2124 2314 1.299468 GACTGCGAGGCGTCTATGG 60.299 63.158 4.69 0.00 32.57 2.74
2125 2315 0.179137 TTGACTGCGAGGCGTCTATG 60.179 55.000 4.69 0.00 34.86 2.23
2126 2316 0.179134 GTTGACTGCGAGGCGTCTAT 60.179 55.000 4.69 0.00 34.86 1.98
2127 2317 1.211969 GTTGACTGCGAGGCGTCTA 59.788 57.895 4.69 4.37 34.86 2.59
2128 2318 2.049063 GTTGACTGCGAGGCGTCT 60.049 61.111 4.69 0.00 34.86 4.18
2129 2319 3.470567 CGTTGACTGCGAGGCGTC 61.471 66.667 0.00 0.00 34.56 5.19
2130 2320 1.929806 TATCGTTGACTGCGAGGCGT 61.930 55.000 0.00 0.00 41.83 5.68
2131 2321 0.800683 TTATCGTTGACTGCGAGGCG 60.801 55.000 0.00 0.00 41.83 5.52
2132 2322 0.645868 GTTATCGTTGACTGCGAGGC 59.354 55.000 0.00 0.00 41.83 4.70
2133 2323 0.914551 CGTTATCGTTGACTGCGAGG 59.085 55.000 0.00 0.00 41.83 4.63
2145 2335 4.092771 TCAGTTGGAGAAGACGTTATCG 57.907 45.455 0.00 0.00 43.34 2.92
2146 2336 5.227908 TGTTCAGTTGGAGAAGACGTTATC 58.772 41.667 0.00 0.00 0.00 1.75
2147 2337 5.209818 TGTTCAGTTGGAGAAGACGTTAT 57.790 39.130 0.00 0.00 0.00 1.89
2148 2338 4.659111 TGTTCAGTTGGAGAAGACGTTA 57.341 40.909 0.00 0.00 0.00 3.18
2149 2339 3.536956 TGTTCAGTTGGAGAAGACGTT 57.463 42.857 0.00 0.00 0.00 3.99
2150 2340 3.536956 TTGTTCAGTTGGAGAAGACGT 57.463 42.857 0.00 0.00 0.00 4.34
2151 2341 3.621268 TGTTTGTTCAGTTGGAGAAGACG 59.379 43.478 0.00 0.00 0.00 4.18
2152 2342 5.559035 CGATGTTTGTTCAGTTGGAGAAGAC 60.559 44.000 0.00 0.00 0.00 3.01
2153 2343 4.511454 CGATGTTTGTTCAGTTGGAGAAGA 59.489 41.667 0.00 0.00 0.00 2.87
2154 2344 4.776743 CGATGTTTGTTCAGTTGGAGAAG 58.223 43.478 0.00 0.00 0.00 2.85
2155 2345 3.003275 GCGATGTTTGTTCAGTTGGAGAA 59.997 43.478 0.00 0.00 0.00 2.87
2156 2346 2.548057 GCGATGTTTGTTCAGTTGGAGA 59.452 45.455 0.00 0.00 0.00 3.71
2157 2347 2.350772 GGCGATGTTTGTTCAGTTGGAG 60.351 50.000 0.00 0.00 0.00 3.86
2158 2348 1.606668 GGCGATGTTTGTTCAGTTGGA 59.393 47.619 0.00 0.00 0.00 3.53
2159 2349 1.336440 TGGCGATGTTTGTTCAGTTGG 59.664 47.619 0.00 0.00 0.00 3.77
2160 2350 2.772568 TGGCGATGTTTGTTCAGTTG 57.227 45.000 0.00 0.00 0.00 3.16
2161 2351 3.791973 TTTGGCGATGTTTGTTCAGTT 57.208 38.095 0.00 0.00 0.00 3.16
2162 2352 3.130340 ACTTTTGGCGATGTTTGTTCAGT 59.870 39.130 0.00 0.00 0.00 3.41
2163 2353 3.705604 ACTTTTGGCGATGTTTGTTCAG 58.294 40.909 0.00 0.00 0.00 3.02
2164 2354 3.380004 AGACTTTTGGCGATGTTTGTTCA 59.620 39.130 0.00 0.00 0.00 3.18
2165 2355 3.730715 CAGACTTTTGGCGATGTTTGTTC 59.269 43.478 0.00 0.00 0.00 3.18
2166 2356 3.380004 TCAGACTTTTGGCGATGTTTGTT 59.620 39.130 0.00 0.00 0.00 2.83
2167 2357 2.948979 TCAGACTTTTGGCGATGTTTGT 59.051 40.909 0.00 0.00 0.00 2.83
2168 2358 3.624326 TCAGACTTTTGGCGATGTTTG 57.376 42.857 0.00 0.00 0.00 2.93
2169 2359 4.647424 TTTCAGACTTTTGGCGATGTTT 57.353 36.364 0.00 0.00 0.00 2.83
2170 2360 4.853924 ATTTCAGACTTTTGGCGATGTT 57.146 36.364 0.00 0.00 0.00 2.71
2171 2361 5.957842 TTATTTCAGACTTTTGGCGATGT 57.042 34.783 0.00 0.00 0.00 3.06
2172 2362 6.473455 GGATTTATTTCAGACTTTTGGCGATG 59.527 38.462 0.00 0.00 0.00 3.84
2173 2363 6.152661 TGGATTTATTTCAGACTTTTGGCGAT 59.847 34.615 0.00 0.00 0.00 4.58
2174 2364 5.475220 TGGATTTATTTCAGACTTTTGGCGA 59.525 36.000 0.00 0.00 0.00 5.54
2175 2365 5.708948 TGGATTTATTTCAGACTTTTGGCG 58.291 37.500 0.00 0.00 0.00 5.69
2176 2366 6.924111 TCTGGATTTATTTCAGACTTTTGGC 58.076 36.000 0.00 0.00 33.21 4.52
2177 2367 9.933723 ATTTCTGGATTTATTTCAGACTTTTGG 57.066 29.630 0.00 0.00 37.28 3.28
2182 2372 8.398665 GCGTTATTTCTGGATTTATTTCAGACT 58.601 33.333 0.00 0.00 37.28 3.24
2183 2373 7.373441 CGCGTTATTTCTGGATTTATTTCAGAC 59.627 37.037 0.00 0.00 37.28 3.51
2184 2374 7.279090 TCGCGTTATTTCTGGATTTATTTCAGA 59.721 33.333 5.77 0.00 35.95 3.27
2185 2375 7.406553 TCGCGTTATTTCTGGATTTATTTCAG 58.593 34.615 5.77 0.00 0.00 3.02
2186 2376 7.310072 TCGCGTTATTTCTGGATTTATTTCA 57.690 32.000 5.77 0.00 0.00 2.69
2187 2377 6.357240 GCTCGCGTTATTTCTGGATTTATTTC 59.643 38.462 5.77 0.00 0.00 2.17
2188 2378 6.183360 TGCTCGCGTTATTTCTGGATTTATTT 60.183 34.615 5.77 0.00 0.00 1.40
2189 2379 5.295787 TGCTCGCGTTATTTCTGGATTTATT 59.704 36.000 5.77 0.00 0.00 1.40
2190 2380 4.814234 TGCTCGCGTTATTTCTGGATTTAT 59.186 37.500 5.77 0.00 0.00 1.40
2191 2381 4.033587 GTGCTCGCGTTATTTCTGGATTTA 59.966 41.667 5.77 0.00 0.00 1.40
2192 2382 3.006940 TGCTCGCGTTATTTCTGGATTT 58.993 40.909 5.77 0.00 0.00 2.17
2193 2383 2.351726 GTGCTCGCGTTATTTCTGGATT 59.648 45.455 5.77 0.00 0.00 3.01
2194 2384 1.933853 GTGCTCGCGTTATTTCTGGAT 59.066 47.619 5.77 0.00 0.00 3.41
2195 2385 1.355971 GTGCTCGCGTTATTTCTGGA 58.644 50.000 5.77 0.00 0.00 3.86
2196 2386 0.373716 GGTGCTCGCGTTATTTCTGG 59.626 55.000 5.77 0.00 0.00 3.86
2197 2387 1.075542 TGGTGCTCGCGTTATTTCTG 58.924 50.000 5.77 0.00 0.00 3.02
2198 2388 1.803334 TTGGTGCTCGCGTTATTTCT 58.197 45.000 5.77 0.00 0.00 2.52
2199 2389 2.159572 ACATTGGTGCTCGCGTTATTTC 60.160 45.455 5.77 0.00 0.00 2.17
2200 2390 1.810151 ACATTGGTGCTCGCGTTATTT 59.190 42.857 5.77 0.00 0.00 1.40
2201 2391 1.396996 GACATTGGTGCTCGCGTTATT 59.603 47.619 5.77 0.00 0.00 1.40
2202 2392 1.006832 GACATTGGTGCTCGCGTTAT 58.993 50.000 5.77 0.00 0.00 1.89
2203 2393 0.319986 TGACATTGGTGCTCGCGTTA 60.320 50.000 5.77 0.00 0.00 3.18
2204 2394 1.163420 TTGACATTGGTGCTCGCGTT 61.163 50.000 5.77 0.00 0.00 4.84
2205 2395 1.163420 TTTGACATTGGTGCTCGCGT 61.163 50.000 5.77 0.00 0.00 6.01
2206 2396 0.168788 ATTTGACATTGGTGCTCGCG 59.831 50.000 0.00 0.00 0.00 5.87
2207 2397 1.470098 AGATTTGACATTGGTGCTCGC 59.530 47.619 0.00 0.00 0.00 5.03
2208 2398 4.631377 TCTTAGATTTGACATTGGTGCTCG 59.369 41.667 0.00 0.00 0.00 5.03
2209 2399 5.645497 AGTCTTAGATTTGACATTGGTGCTC 59.355 40.000 0.00 0.00 35.81 4.26
2210 2400 5.564550 AGTCTTAGATTTGACATTGGTGCT 58.435 37.500 0.00 0.00 35.81 4.40
2211 2401 5.886960 AGTCTTAGATTTGACATTGGTGC 57.113 39.130 0.00 0.00 35.81 5.01
2212 2402 7.439157 TCAAGTCTTAGATTTGACATTGGTG 57.561 36.000 14.73 0.00 34.30 4.17
2213 2403 7.040409 GGTTCAAGTCTTAGATTTGACATTGGT 60.040 37.037 17.68 0.00 37.85 3.67
2214 2404 7.308435 GGTTCAAGTCTTAGATTTGACATTGG 58.692 38.462 17.68 0.00 37.85 3.16
2215 2405 7.175641 AGGGTTCAAGTCTTAGATTTGACATTG 59.824 37.037 17.68 1.34 37.85 2.82
2216 2406 7.175641 CAGGGTTCAAGTCTTAGATTTGACATT 59.824 37.037 17.68 4.12 37.85 2.71
2217 2407 6.656693 CAGGGTTCAAGTCTTAGATTTGACAT 59.343 38.462 17.68 4.90 37.85 3.06
2218 2408 5.997746 CAGGGTTCAAGTCTTAGATTTGACA 59.002 40.000 17.68 8.39 37.85 3.58
2219 2409 5.998363 ACAGGGTTCAAGTCTTAGATTTGAC 59.002 40.000 17.68 13.02 37.85 3.18
2220 2410 6.187727 ACAGGGTTCAAGTCTTAGATTTGA 57.812 37.500 14.73 14.73 36.70 2.69
2221 2411 6.294176 CCAACAGGGTTCAAGTCTTAGATTTG 60.294 42.308 10.64 10.64 31.89 2.32
2222 2412 5.770162 CCAACAGGGTTCAAGTCTTAGATTT 59.230 40.000 0.00 0.00 0.00 2.17
2223 2413 5.316987 CCAACAGGGTTCAAGTCTTAGATT 58.683 41.667 0.00 0.00 0.00 2.40
2224 2414 4.263506 CCCAACAGGGTTCAAGTCTTAGAT 60.264 45.833 0.00 0.00 37.83 1.98
2225 2415 3.072476 CCCAACAGGGTTCAAGTCTTAGA 59.928 47.826 0.00 0.00 37.83 2.10
2226 2416 3.412386 CCCAACAGGGTTCAAGTCTTAG 58.588 50.000 0.00 0.00 37.83 2.18
2227 2417 2.488347 GCCCAACAGGGTTCAAGTCTTA 60.488 50.000 2.03 0.00 44.99 2.10
2228 2418 1.754201 GCCCAACAGGGTTCAAGTCTT 60.754 52.381 2.03 0.00 44.99 3.01
2229 2419 0.178990 GCCCAACAGGGTTCAAGTCT 60.179 55.000 2.03 0.00 44.99 3.24
2230 2420 2.341452 GCCCAACAGGGTTCAAGTC 58.659 57.895 2.03 0.00 44.99 3.01
2231 2421 4.599036 GCCCAACAGGGTTCAAGT 57.401 55.556 2.03 0.00 44.99 3.16
2238 2428 1.843851 TGTATTCCTAGCCCAACAGGG 59.156 52.381 0.00 0.00 46.03 4.45
2239 2429 3.054361 AGTTGTATTCCTAGCCCAACAGG 60.054 47.826 0.00 0.00 38.24 4.00
2240 2430 3.941483 CAGTTGTATTCCTAGCCCAACAG 59.059 47.826 0.00 0.00 38.24 3.16
2241 2431 3.329520 ACAGTTGTATTCCTAGCCCAACA 59.670 43.478 0.00 0.00 38.24 3.33
2242 2432 3.939592 GACAGTTGTATTCCTAGCCCAAC 59.060 47.826 0.00 0.00 36.52 3.77
2243 2433 3.054655 GGACAGTTGTATTCCTAGCCCAA 60.055 47.826 0.00 0.00 0.00 4.12
2244 2434 2.504175 GGACAGTTGTATTCCTAGCCCA 59.496 50.000 0.00 0.00 0.00 5.36
2245 2435 2.772515 AGGACAGTTGTATTCCTAGCCC 59.227 50.000 0.00 0.00 38.03 5.19
2246 2436 4.162509 AGAAGGACAGTTGTATTCCTAGCC 59.837 45.833 0.00 0.00 38.93 3.93
2247 2437 5.346181 AGAAGGACAGTTGTATTCCTAGC 57.654 43.478 0.00 0.00 38.93 3.42
2248 2438 7.093465 TGGTTAGAAGGACAGTTGTATTCCTAG 60.093 40.741 0.00 0.00 38.93 3.02
2249 2439 6.727231 TGGTTAGAAGGACAGTTGTATTCCTA 59.273 38.462 0.00 0.00 38.93 2.94
2250 2440 5.546499 TGGTTAGAAGGACAGTTGTATTCCT 59.454 40.000 6.23 0.00 41.84 3.36
2251 2441 5.801380 TGGTTAGAAGGACAGTTGTATTCC 58.199 41.667 6.23 0.00 0.00 3.01
2252 2442 7.606456 TGAATGGTTAGAAGGACAGTTGTATTC 59.394 37.037 0.00 0.00 0.00 1.75
2253 2443 7.458397 TGAATGGTTAGAAGGACAGTTGTATT 58.542 34.615 0.00 0.00 0.00 1.89
2254 2444 7.016153 TGAATGGTTAGAAGGACAGTTGTAT 57.984 36.000 0.00 0.00 0.00 2.29
2255 2445 6.428083 TGAATGGTTAGAAGGACAGTTGTA 57.572 37.500 0.00 0.00 0.00 2.41
2256 2446 5.304686 TGAATGGTTAGAAGGACAGTTGT 57.695 39.130 0.00 0.00 0.00 3.32
2257 2447 5.048713 GGTTGAATGGTTAGAAGGACAGTTG 60.049 44.000 0.00 0.00 0.00 3.16
2258 2448 5.070685 GGTTGAATGGTTAGAAGGACAGTT 58.929 41.667 0.00 0.00 0.00 3.16
2259 2449 4.104102 TGGTTGAATGGTTAGAAGGACAGT 59.896 41.667 0.00 0.00 0.00 3.55
2260 2450 4.455877 GTGGTTGAATGGTTAGAAGGACAG 59.544 45.833 0.00 0.00 0.00 3.51
2261 2451 4.141367 TGTGGTTGAATGGTTAGAAGGACA 60.141 41.667 0.00 0.00 0.00 4.02
2262 2452 4.394729 TGTGGTTGAATGGTTAGAAGGAC 58.605 43.478 0.00 0.00 0.00 3.85
2263 2453 4.506625 CCTGTGGTTGAATGGTTAGAAGGA 60.507 45.833 0.00 0.00 0.00 3.36
2264 2454 3.758554 CCTGTGGTTGAATGGTTAGAAGG 59.241 47.826 0.00 0.00 0.00 3.46
2265 2455 4.398319 ACCTGTGGTTGAATGGTTAGAAG 58.602 43.478 0.00 0.00 27.29 2.85
2266 2456 4.447138 ACCTGTGGTTGAATGGTTAGAA 57.553 40.909 0.00 0.00 27.29 2.10
2267 2457 4.447138 AACCTGTGGTTGAATGGTTAGA 57.553 40.909 0.71 0.00 45.07 2.10
2301 2491 9.950680 CAGAGTAGTCAAACATGTTGTAATTTT 57.049 29.630 12.82 0.00 0.00 1.82
2302 2492 8.567948 CCAGAGTAGTCAAACATGTTGTAATTT 58.432 33.333 12.82 0.00 0.00 1.82
2303 2493 7.174946 CCCAGAGTAGTCAAACATGTTGTAATT 59.825 37.037 12.82 0.44 0.00 1.40
2304 2494 6.655003 CCCAGAGTAGTCAAACATGTTGTAAT 59.345 38.462 12.82 5.28 0.00 1.89
2327 2517 6.867519 TTCTATTTTTCATTCCCTTTCCCC 57.132 37.500 0.00 0.00 0.00 4.81
2371 2561 8.939201 TTCAATTTGAACTTTTGTATTGAGCA 57.061 26.923 7.74 0.00 36.00 4.26
2400 2590 7.264947 TGAAACTCAGTTGATGCGATTATAGA 58.735 34.615 0.00 0.00 0.00 1.98
2404 2594 6.741992 AATGAAACTCAGTTGATGCGATTA 57.258 33.333 0.00 0.00 0.00 1.75
2415 2605 8.908903 TGTGGTTATTGTAAAATGAAACTCAGT 58.091 29.630 0.00 0.00 0.00 3.41
2431 2621 8.776376 ATTTGCTAAGGAAATTGTGGTTATTG 57.224 30.769 0.00 0.00 0.00 1.90
2441 2631 5.279960 GGGGTGACAATTTGCTAAGGAAATT 60.280 40.000 0.00 0.00 34.10 1.82
2446 2636 1.472480 CGGGGTGACAATTTGCTAAGG 59.528 52.381 0.00 0.00 0.00 2.69
2452 2642 3.146066 TCTTCTTCGGGGTGACAATTTG 58.854 45.455 0.00 0.00 0.00 2.32
2457 2647 3.146066 CATTTTCTTCTTCGGGGTGACA 58.854 45.455 0.00 0.00 0.00 3.58
2468 2658 4.476479 AGGCCCTCTCATACATTTTCTTCT 59.524 41.667 0.00 0.00 0.00 2.85
2481 2671 0.249398 GCGTTTTAGAGGCCCTCTCA 59.751 55.000 18.65 2.78 44.81 3.27
2506 2699 0.820871 CTGACTCTGTAGGGCAGGAC 59.179 60.000 0.00 0.00 45.08 3.85
2507 2700 0.704664 TCTGACTCTGTAGGGCAGGA 59.295 55.000 0.00 0.00 45.08 3.86
2523 2716 4.747108 GGTATCCGAGATTTGTGTCATCTG 59.253 45.833 0.00 0.00 30.70 2.90
2527 2720 2.169769 GGGGTATCCGAGATTTGTGTCA 59.830 50.000 0.00 0.00 0.00 3.58
2528 2721 2.169769 TGGGGTATCCGAGATTTGTGTC 59.830 50.000 0.00 0.00 38.76 3.67
2540 2733 1.344763 CTCGACCTCATTGGGGTATCC 59.655 57.143 8.58 0.00 41.11 2.59
2549 2742 1.924731 TGGACAGTCTCGACCTCATT 58.075 50.000 0.00 0.00 0.00 2.57
2556 2749 4.482386 CGATAAAGTTTGGACAGTCTCGA 58.518 43.478 0.00 0.00 0.00 4.04
2564 2757 4.995487 AGTTCTGACCGATAAAGTTTGGAC 59.005 41.667 0.00 0.00 0.00 4.02
2575 2768 1.478510 CCAGCTACAGTTCTGACCGAT 59.521 52.381 6.83 0.00 32.26 4.18
2580 2773 2.171840 GTCCTCCAGCTACAGTTCTGA 58.828 52.381 6.83 0.00 32.26 3.27
2588 2781 1.757699 CCTACTTGGTCCTCCAGCTAC 59.242 57.143 0.00 0.00 45.22 3.58
2592 2785 1.827969 CTGTCCTACTTGGTCCTCCAG 59.172 57.143 0.00 0.00 45.22 3.86
2601 2794 1.272490 TCGGTCTTGCTGTCCTACTTG 59.728 52.381 0.00 0.00 0.00 3.16
2602 2795 1.546476 CTCGGTCTTGCTGTCCTACTT 59.454 52.381 0.00 0.00 0.00 2.24
2604 2797 1.135344 GTCTCGGTCTTGCTGTCCTAC 60.135 57.143 0.00 0.00 0.00 3.18
2613 2806 2.766313 TCCATGTTTGTCTCGGTCTTG 58.234 47.619 0.00 0.00 0.00 3.02
2615 2808 3.485463 TTTCCATGTTTGTCTCGGTCT 57.515 42.857 0.00 0.00 0.00 3.85
2617 2810 3.815809 TCTTTTCCATGTTTGTCTCGGT 58.184 40.909 0.00 0.00 0.00 4.69
2618 2811 4.829064 TTCTTTTCCATGTTTGTCTCGG 57.171 40.909 0.00 0.00 0.00 4.63
2632 2825 1.398071 CGAGTCCGGCGTTTTCTTTTC 60.398 52.381 6.01 0.00 0.00 2.29
2634 2827 2.231820 CGAGTCCGGCGTTTTCTTT 58.768 52.632 6.01 0.00 0.00 2.52
2648 2841 2.223803 ACAGGTCTGATTCTCCGAGT 57.776 50.000 4.84 0.00 0.00 4.18
2671 2864 0.892755 TCGTAATGTCGGAAGGCTGT 59.107 50.000 0.00 0.00 36.07 4.40
2674 2867 0.458669 TCCTCGTAATGTCGGAAGGC 59.541 55.000 0.00 0.00 0.00 4.35
2681 2874 3.385577 GGAGATGCTTCCTCGTAATGTC 58.614 50.000 0.00 0.00 34.27 3.06
2708 2901 2.125350 GTCTCTCTGCCTTGCCCG 60.125 66.667 0.00 0.00 0.00 6.13
2740 2933 2.969238 CGAGATGATGGTGCCGCC 60.969 66.667 0.00 0.00 37.90 6.13
2741 2934 3.643978 GCGAGATGATGGTGCCGC 61.644 66.667 0.00 0.00 35.91 6.53
2742 2935 2.107750 AGCGAGATGATGGTGCCG 59.892 61.111 0.00 0.00 0.00 5.69
2753 2946 1.078918 CCATTCACTGGCAGCGAGA 60.079 57.895 15.89 7.64 38.47 4.04
2759 2952 3.181451 GGATATGTCTCCATTCACTGGCA 60.181 47.826 0.00 0.00 45.52 4.92
2760 2953 3.072184 AGGATATGTCTCCATTCACTGGC 59.928 47.826 0.00 0.00 45.52 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.