Multiple sequence alignment - TraesCS4D01G271800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G271800 chr4D 100.000 2874 0 0 1 2874 442249808 442246935 0.000000e+00 5308.0
1 TraesCS4D01G271800 chr4D 92.800 1986 111 13 151 2117 442223866 442221894 0.000000e+00 2846.0
2 TraesCS4D01G271800 chr4D 88.943 1646 133 34 567 2187 442395653 442397274 0.000000e+00 1986.0
3 TraesCS4D01G271800 chr4D 88.766 1451 116 23 598 2012 442215768 442214329 0.000000e+00 1733.0
4 TraesCS4D01G271800 chr4D 90.994 855 70 5 1467 2317 442221027 442220176 0.000000e+00 1146.0
5 TraesCS4D01G271800 chr4D 84.733 917 121 12 974 1874 441255867 441256780 0.000000e+00 900.0
6 TraesCS4D01G271800 chr4D 79.419 413 56 23 2317 2717 489241621 489241226 6.110000e-67 265.0
7 TraesCS4D01G271800 chr4D 85.780 218 25 6 245 460 442395280 442395493 2.880000e-55 226.0
8 TraesCS4D01G271800 chr4D 95.238 126 5 1 171 296 442224098 442223974 6.280000e-47 198.0
9 TraesCS4D01G271800 chr4D 87.000 100 13 0 2722 2821 442397569 442397668 2.340000e-21 113.0
10 TraesCS4D01G271800 chr4A 90.269 1860 125 20 178 2018 24934776 24936598 0.000000e+00 2381.0
11 TraesCS4D01G271800 chr4A 88.646 1647 147 23 570 2189 24919886 24918253 0.000000e+00 1969.0
12 TraesCS4D01G271800 chr4A 80.595 1345 174 41 583 1874 26324661 26323351 0.000000e+00 957.0
13 TraesCS4D01G271800 chr4A 84.456 193 21 6 341 525 24920228 24920037 6.330000e-42 182.0
14 TraesCS4D01G271800 chr4A 90.000 50 3 2 2 49 147100277 147100326 2.390000e-06 63.9
15 TraesCS4D01G271800 chr4B 89.450 1564 117 25 567 2099 550502380 550503926 0.000000e+00 1930.0
16 TraesCS4D01G271800 chr4B 88.039 1438 124 22 599 2015 550433469 550432059 0.000000e+00 1659.0
17 TraesCS4D01G271800 chr4B 90.328 1127 103 4 1196 2317 550487543 550486418 0.000000e+00 1472.0
18 TraesCS4D01G271800 chr4B 89.583 576 41 10 609 1177 550488324 550487761 0.000000e+00 713.0
19 TraesCS4D01G271800 chr4B 92.616 474 31 3 110 581 550489372 550488901 0.000000e+00 678.0
20 TraesCS4D01G271800 chr4B 78.802 217 19 12 245 460 550502027 550502217 1.400000e-23 121.0
21 TraesCS4D01G271800 chr3A 81.234 389 55 16 2325 2704 589193808 589194187 6.020000e-77 298.0
22 TraesCS4D01G271800 chr5B 81.383 376 54 13 2339 2704 122614860 122614491 2.800000e-75 292.0
23 TraesCS4D01G271800 chr7A 80.720 389 59 12 2325 2704 26465637 26466018 3.620000e-74 289.0
24 TraesCS4D01G271800 chr7D 80.620 387 62 11 2325 2702 538352560 538352178 1.300000e-73 287.0
25 TraesCS4D01G271800 chr5D 79.710 414 60 20 2317 2717 28271866 28271464 7.840000e-71 278.0
26 TraesCS4D01G271800 chr6B 79.048 420 65 20 2312 2717 720956308 720955898 1.700000e-67 267.0
27 TraesCS4D01G271800 chr2D 79.075 411 60 22 2317 2717 557167839 557168233 2.840000e-65 259.0
28 TraesCS4D01G271800 chr2D 88.889 45 4 1 2204 2247 328340316 328340272 1.000000e-03 54.7
29 TraesCS4D01G271800 chr3D 78.641 412 69 16 2317 2717 508448365 508447962 3.670000e-64 255.0
30 TraesCS4D01G271800 chr1A 78.095 315 31 16 822 1126 569356152 569355866 6.370000e-37 165.0
31 TraesCS4D01G271800 chr7B 90.000 50 3 2 2 49 664240824 664240873 2.390000e-06 63.9
32 TraesCS4D01G271800 chr6A 92.105 38 3 0 2207 2244 407799806 407799843 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G271800 chr4D 442246935 442249808 2873 True 5308.000000 5308 100.000000 1 2874 1 chr4D.!!$R2 2873
1 TraesCS4D01G271800 chr4D 442214329 442215768 1439 True 1733.000000 1733 88.766000 598 2012 1 chr4D.!!$R1 1414
2 TraesCS4D01G271800 chr4D 442220176 442224098 3922 True 1396.666667 2846 93.010667 151 2317 3 chr4D.!!$R4 2166
3 TraesCS4D01G271800 chr4D 441255867 441256780 913 False 900.000000 900 84.733000 974 1874 1 chr4D.!!$F1 900
4 TraesCS4D01G271800 chr4D 442395280 442397668 2388 False 775.000000 1986 87.241000 245 2821 3 chr4D.!!$F2 2576
5 TraesCS4D01G271800 chr4A 24934776 24936598 1822 False 2381.000000 2381 90.269000 178 2018 1 chr4A.!!$F1 1840
6 TraesCS4D01G271800 chr4A 24918253 24920228 1975 True 1075.500000 1969 86.551000 341 2189 2 chr4A.!!$R2 1848
7 TraesCS4D01G271800 chr4A 26323351 26324661 1310 True 957.000000 957 80.595000 583 1874 1 chr4A.!!$R1 1291
8 TraesCS4D01G271800 chr4B 550432059 550433469 1410 True 1659.000000 1659 88.039000 599 2015 1 chr4B.!!$R1 1416
9 TraesCS4D01G271800 chr4B 550502027 550503926 1899 False 1025.500000 1930 84.126000 245 2099 2 chr4B.!!$F1 1854
10 TraesCS4D01G271800 chr4B 550486418 550489372 2954 True 954.333333 1472 90.842333 110 2317 3 chr4B.!!$R2 2207

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 578 0.451783 GTGTTGGCTAGCGGGAATTG 59.548 55.000 9.0 0.0 0.0 2.32 F
914 1925 1.001974 TCGCCACAACATCTAGCAAGT 59.998 47.619 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1258 2488 0.319211 CCGCAACGTACAGGTTCTCA 60.319 55.0 0.0 0.0 0.0 3.27 R
2590 5523 0.035439 ATTTTGGTGTCCGCTCCGAT 60.035 50.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.529109 TGATGTGTGGAAGTACATTCGA 57.471 40.909 0.00 0.00 37.63 3.71
26 27 5.084818 TGATGTGTGGAAGTACATTCGAT 57.915 39.130 0.00 0.00 37.63 3.59
27 28 6.215495 TGATGTGTGGAAGTACATTCGATA 57.785 37.500 0.00 0.00 37.63 2.92
28 29 6.635755 TGATGTGTGGAAGTACATTCGATAA 58.364 36.000 0.00 0.00 37.63 1.75
29 30 7.272244 TGATGTGTGGAAGTACATTCGATAAT 58.728 34.615 0.00 0.00 37.63 1.28
30 31 6.902224 TGTGTGGAAGTACATTCGATAATG 57.098 37.500 0.00 0.00 46.66 1.90
31 32 6.635755 TGTGTGGAAGTACATTCGATAATGA 58.364 36.000 4.12 0.00 44.50 2.57
32 33 7.100409 TGTGTGGAAGTACATTCGATAATGAA 58.900 34.615 4.12 0.00 44.50 2.57
33 34 7.768582 TGTGTGGAAGTACATTCGATAATGAAT 59.231 33.333 4.12 0.00 44.50 2.57
34 35 8.276325 GTGTGGAAGTACATTCGATAATGAATC 58.724 37.037 4.12 0.00 44.50 2.52
35 36 8.204160 TGTGGAAGTACATTCGATAATGAATCT 58.796 33.333 4.12 0.00 44.50 2.40
36 37 9.692749 GTGGAAGTACATTCGATAATGAATCTA 57.307 33.333 4.12 0.00 44.50 1.98
91 92 8.792831 ATTTTGATCAAAGCTAATATGCGAAG 57.207 30.769 19.64 0.00 38.13 3.79
92 93 6.925610 TTGATCAAAGCTAATATGCGAAGT 57.074 33.333 5.45 0.00 38.13 3.01
93 94 8.432110 TTTGATCAAAGCTAATATGCGAAGTA 57.568 30.769 16.91 0.00 38.13 2.24
94 95 8.432110 TTGATCAAAGCTAATATGCGAAGTAA 57.568 30.769 5.45 0.00 38.13 2.24
95 96 7.851508 TGATCAAAGCTAATATGCGAAGTAAC 58.148 34.615 0.00 0.00 38.13 2.50
96 97 7.710907 TGATCAAAGCTAATATGCGAAGTAACT 59.289 33.333 0.00 0.00 38.13 2.24
97 98 9.193133 GATCAAAGCTAATATGCGAAGTAACTA 57.807 33.333 0.00 0.00 38.13 2.24
98 99 8.936070 TCAAAGCTAATATGCGAAGTAACTAA 57.064 30.769 0.00 0.00 38.13 2.24
99 100 9.373603 TCAAAGCTAATATGCGAAGTAACTAAA 57.626 29.630 0.00 0.00 38.13 1.85
100 101 9.982291 CAAAGCTAATATGCGAAGTAACTAAAA 57.018 29.630 0.00 0.00 38.13 1.52
102 103 9.983804 AAGCTAATATGCGAAGTAACTAAAAAC 57.016 29.630 0.00 0.00 38.13 2.43
103 104 8.325997 AGCTAATATGCGAAGTAACTAAAAACG 58.674 33.333 0.00 0.00 38.13 3.60
104 105 7.581600 GCTAATATGCGAAGTAACTAAAAACGG 59.418 37.037 0.00 0.00 0.00 4.44
105 106 7.599630 AATATGCGAAGTAACTAAAAACGGA 57.400 32.000 0.00 0.00 0.00 4.69
106 107 4.977741 TGCGAAGTAACTAAAAACGGAG 57.022 40.909 0.00 0.00 0.00 4.63
107 108 3.742369 TGCGAAGTAACTAAAAACGGAGG 59.258 43.478 0.00 0.00 0.00 4.30
108 109 3.124128 GCGAAGTAACTAAAAACGGAGGG 59.876 47.826 0.00 0.00 0.00 4.30
128 129 7.871463 CGGAGGGAGTACTAATAATTAAGGTTG 59.129 40.741 0.00 0.00 0.00 3.77
135 136 9.828039 AGTACTAATAATTAAGGTTGGTGTAGC 57.172 33.333 0.00 0.00 0.00 3.58
157 158 3.189287 CCGATTGACCTTGAACAAGAAGG 59.811 47.826 14.99 0.00 44.94 3.46
165 166 5.755849 ACCTTGAACAAGAAGGAAAGAAGA 58.244 37.500 14.99 0.00 42.44 2.87
166 167 5.590663 ACCTTGAACAAGAAGGAAAGAAGAC 59.409 40.000 14.99 0.00 42.44 3.01
167 168 5.277538 CCTTGAACAAGAAGGAAAGAAGACG 60.278 44.000 14.99 0.00 42.44 4.18
229 230 3.129287 TCCGGTAGTTAGTTTAGAAGGCG 59.871 47.826 0.00 0.00 0.00 5.52
277 278 1.973812 GAGGGAGTTGGGCTTGCAC 60.974 63.158 0.00 0.00 0.00 4.57
316 578 0.451783 GTGTTGGCTAGCGGGAATTG 59.548 55.000 9.00 0.00 0.00 2.32
323 585 1.718757 CTAGCGGGAATTGCAGCACC 61.719 60.000 22.57 0.00 33.85 5.01
914 1925 1.001974 TCGCCACAACATCTAGCAAGT 59.998 47.619 0.00 0.00 0.00 3.16
943 1954 3.624861 GGTGCGTGAGAAGATCAATCATT 59.375 43.478 0.00 0.00 40.43 2.57
964 1975 7.632861 TCATTTATTCATCTCTCCCTGTTTCA 58.367 34.615 0.00 0.00 0.00 2.69
996 2009 1.022982 CGAGCAGAAAGATGGCAGCA 61.023 55.000 5.19 0.00 0.00 4.41
1224 2454 4.026640 GTGTGTGCATGTTTGAATGTGTTC 60.027 41.667 0.00 0.00 34.85 3.18
1258 2488 4.770874 GGTGGCGCGTGTGGGTAT 62.771 66.667 8.43 0.00 0.00 2.73
1279 2509 1.301165 GAACCTGTACGTTGCGGGT 60.301 57.895 15.07 15.07 46.77 5.28
1354 2584 1.435925 CGGGCAGTGCTACGTCATA 59.564 57.895 16.11 0.00 0.00 2.15
1372 2602 2.177394 TAATCTGCGACACCAGCAAA 57.823 45.000 0.00 0.00 44.67 3.68
1702 2932 3.319198 AACACCGCGTGGATCCCT 61.319 61.111 24.59 0.00 37.94 4.20
1708 2938 1.464376 CCGCGTGGATCCCTATGTCT 61.464 60.000 10.20 0.00 37.49 3.41
1747 2977 2.977178 CACTGCCTCTCGGAGCTT 59.023 61.111 0.00 0.00 0.00 3.74
1750 2980 1.153667 CTGCCTCTCGGAGCTTGTC 60.154 63.158 0.00 0.00 0.00 3.18
2078 4827 7.482169 TTGTAAAAATATGCAACCCCACATA 57.518 32.000 0.00 0.00 33.52 2.29
2113 4865 5.006746 CACTACGGGAATATGCTTCTTTGTC 59.993 44.000 0.00 0.00 0.00 3.18
2120 4872 2.624316 ATGCTTCTTTGTCATGCGTG 57.376 45.000 0.00 0.00 0.00 5.34
2126 4878 1.621317 TCTTTGTCATGCGTGGGAGTA 59.379 47.619 5.98 0.00 0.00 2.59
2140 4892 4.084013 CGTGGGAGTATTTGTCAAGTGTTC 60.084 45.833 0.00 0.00 0.00 3.18
2144 4896 4.695928 GGAGTATTTGTCAAGTGTTCTCCC 59.304 45.833 12.98 0.00 34.63 4.30
2147 4899 3.358111 TTTGTCAAGTGTTCTCCCACA 57.642 42.857 0.00 0.00 37.82 4.17
2149 4901 2.115427 TGTCAAGTGTTCTCCCACAGA 58.885 47.619 0.00 0.00 37.82 3.41
2178 4931 4.579869 ACAAATAGATCTTTGCCGAGTGT 58.420 39.130 0.00 0.00 39.26 3.55
2194 5122 4.024725 CCGAGTGTTTTCGAAAATACACCA 60.025 41.667 36.14 23.17 43.96 4.17
2195 5123 5.334569 CCGAGTGTTTTCGAAAATACACCAT 60.335 40.000 36.14 23.61 43.96 3.55
2201 5129 6.019479 TGTTTTCGAAAATACACCATGCAAAC 60.019 34.615 24.93 9.23 0.00 2.93
2232 5160 4.613925 ACTGCAGAGAATTCAGAGACAA 57.386 40.909 23.35 0.00 0.00 3.18
2251 5183 4.600062 ACAATGTTTATGGAGGAAGGACC 58.400 43.478 0.00 0.00 39.35 4.46
2272 5204 1.547675 GGAACCTGCAACATCCTTGGA 60.548 52.381 4.50 0.00 0.00 3.53
2283 5215 2.718062 ACATCCTTGGATGCATGGGATA 59.282 45.455 24.78 0.91 35.34 2.59
2292 5224 3.642848 GGATGCATGGGATATGGTTTGTT 59.357 43.478 2.46 0.00 0.00 2.83
2319 5252 3.398318 AAAACAAGGGAGGTTTGGAGT 57.602 42.857 0.00 0.00 38.40 3.85
2320 5253 2.364972 AACAAGGGAGGTTTGGAGTG 57.635 50.000 0.00 0.00 0.00 3.51
2321 5254 0.178990 ACAAGGGAGGTTTGGAGTGC 60.179 55.000 0.00 0.00 0.00 4.40
2322 5255 0.178992 CAAGGGAGGTTTGGAGTGCA 60.179 55.000 0.00 0.00 0.00 4.57
2323 5256 0.111253 AAGGGAGGTTTGGAGTGCAG 59.889 55.000 0.00 0.00 0.00 4.41
2324 5257 1.973812 GGGAGGTTTGGAGTGCAGC 60.974 63.158 0.00 0.00 0.00 5.25
2325 5258 1.228245 GGAGGTTTGGAGTGCAGCA 60.228 57.895 0.00 0.00 0.00 4.41
2326 5259 0.823356 GGAGGTTTGGAGTGCAGCAA 60.823 55.000 0.00 0.00 0.00 3.91
2327 5260 1.251251 GAGGTTTGGAGTGCAGCAAT 58.749 50.000 0.00 0.00 0.00 3.56
2328 5261 1.615392 GAGGTTTGGAGTGCAGCAATT 59.385 47.619 0.00 0.00 0.00 2.32
2329 5262 1.615392 AGGTTTGGAGTGCAGCAATTC 59.385 47.619 0.00 0.00 0.00 2.17
2330 5263 1.666888 GGTTTGGAGTGCAGCAATTCG 60.667 52.381 0.00 0.00 0.00 3.34
2331 5264 0.597568 TTTGGAGTGCAGCAATTCGG 59.402 50.000 0.00 0.00 0.00 4.30
2332 5265 0.537143 TTGGAGTGCAGCAATTCGGT 60.537 50.000 0.00 0.00 0.00 4.69
2333 5266 1.236616 TGGAGTGCAGCAATTCGGTG 61.237 55.000 0.00 3.62 46.27 4.94
2339 5272 2.397751 CAGCAATTCGGTGCCTAGG 58.602 57.895 3.67 3.67 46.14 3.02
2340 5273 1.097547 CAGCAATTCGGTGCCTAGGG 61.098 60.000 11.72 0.00 46.14 3.53
2341 5274 1.077716 GCAATTCGGTGCCTAGGGT 60.078 57.895 11.72 0.00 38.66 4.34
2342 5275 1.095807 GCAATTCGGTGCCTAGGGTC 61.096 60.000 11.72 0.00 38.66 4.46
2343 5276 0.251916 CAATTCGGTGCCTAGGGTCA 59.748 55.000 11.72 0.00 0.00 4.02
2344 5277 1.134098 CAATTCGGTGCCTAGGGTCAT 60.134 52.381 11.72 0.00 0.00 3.06
2345 5278 0.759346 ATTCGGTGCCTAGGGTCATC 59.241 55.000 11.72 0.00 0.00 2.92
2346 5279 0.325296 TTCGGTGCCTAGGGTCATCT 60.325 55.000 11.72 0.00 0.00 2.90
2347 5280 1.043116 TCGGTGCCTAGGGTCATCTG 61.043 60.000 11.72 1.94 0.00 2.90
2348 5281 1.147153 GGTGCCTAGGGTCATCTGC 59.853 63.158 11.72 0.00 0.00 4.26
2349 5282 1.626356 GGTGCCTAGGGTCATCTGCA 61.626 60.000 11.72 0.00 0.00 4.41
2350 5283 0.462759 GTGCCTAGGGTCATCTGCAC 60.463 60.000 11.72 5.82 41.75 4.57
2351 5284 1.147153 GCCTAGGGTCATCTGCACC 59.853 63.158 11.72 0.00 0.00 5.01
2355 5288 3.717294 GGGTCATCTGCACCCGGT 61.717 66.667 0.00 0.00 44.42 5.28
2356 5289 2.125106 GGTCATCTGCACCCGGTC 60.125 66.667 0.00 0.00 0.00 4.79
2357 5290 2.662596 GTCATCTGCACCCGGTCA 59.337 61.111 0.00 0.00 0.00 4.02
2358 5291 1.003839 GTCATCTGCACCCGGTCAA 60.004 57.895 0.00 0.00 0.00 3.18
2359 5292 1.021390 GTCATCTGCACCCGGTCAAG 61.021 60.000 0.00 0.00 0.00 3.02
2360 5293 1.191489 TCATCTGCACCCGGTCAAGA 61.191 55.000 0.00 0.00 0.00 3.02
2361 5294 0.321564 CATCTGCACCCGGTCAAGAA 60.322 55.000 0.00 0.00 0.00 2.52
2362 5295 0.400213 ATCTGCACCCGGTCAAGAAA 59.600 50.000 0.00 0.00 0.00 2.52
2363 5296 0.181587 TCTGCACCCGGTCAAGAAAA 59.818 50.000 0.00 0.00 0.00 2.29
2364 5297 1.028905 CTGCACCCGGTCAAGAAAAA 58.971 50.000 0.00 0.00 0.00 1.94
2365 5298 0.741915 TGCACCCGGTCAAGAAAAAC 59.258 50.000 0.00 0.00 0.00 2.43
2366 5299 0.741915 GCACCCGGTCAAGAAAAACA 59.258 50.000 0.00 0.00 0.00 2.83
2367 5300 1.339929 GCACCCGGTCAAGAAAAACAT 59.660 47.619 0.00 0.00 0.00 2.71
2368 5301 2.607038 GCACCCGGTCAAGAAAAACATC 60.607 50.000 0.00 0.00 0.00 3.06
2369 5302 2.621055 CACCCGGTCAAGAAAAACATCA 59.379 45.455 0.00 0.00 0.00 3.07
2370 5303 2.621526 ACCCGGTCAAGAAAAACATCAC 59.378 45.455 0.00 0.00 0.00 3.06
2371 5304 2.621055 CCCGGTCAAGAAAAACATCACA 59.379 45.455 0.00 0.00 0.00 3.58
2372 5305 3.067461 CCCGGTCAAGAAAAACATCACAA 59.933 43.478 0.00 0.00 0.00 3.33
2373 5306 4.440802 CCCGGTCAAGAAAAACATCACAAA 60.441 41.667 0.00 0.00 0.00 2.83
2374 5307 5.105752 CCGGTCAAGAAAAACATCACAAAA 58.894 37.500 0.00 0.00 0.00 2.44
2375 5308 5.752955 CCGGTCAAGAAAAACATCACAAAAT 59.247 36.000 0.00 0.00 0.00 1.82
2376 5309 6.920758 CCGGTCAAGAAAAACATCACAAAATA 59.079 34.615 0.00 0.00 0.00 1.40
2377 5310 7.598493 CCGGTCAAGAAAAACATCACAAAATAT 59.402 33.333 0.00 0.00 0.00 1.28
2378 5311 8.977505 CGGTCAAGAAAAACATCACAAAATATT 58.022 29.630 0.00 0.00 0.00 1.28
2432 5365 8.746922 ATTGCATGGTAGATAATTTTATTGCG 57.253 30.769 0.00 0.00 0.00 4.85
2433 5366 7.270757 TGCATGGTAGATAATTTTATTGCGT 57.729 32.000 0.00 0.00 0.00 5.24
2434 5367 7.138081 TGCATGGTAGATAATTTTATTGCGTG 58.862 34.615 0.00 0.00 0.00 5.34
2435 5368 7.012799 TGCATGGTAGATAATTTTATTGCGTGA 59.987 33.333 0.00 0.00 0.00 4.35
2436 5369 7.323656 GCATGGTAGATAATTTTATTGCGTGAC 59.676 37.037 0.00 0.00 0.00 3.67
2437 5370 6.939627 TGGTAGATAATTTTATTGCGTGACG 58.060 36.000 0.00 0.00 0.00 4.35
2438 5371 6.535865 TGGTAGATAATTTTATTGCGTGACGT 59.464 34.615 6.91 0.00 0.00 4.34
2439 5372 7.064847 TGGTAGATAATTTTATTGCGTGACGTT 59.935 33.333 6.91 0.00 0.00 3.99
2440 5373 7.581600 GGTAGATAATTTTATTGCGTGACGTTC 59.418 37.037 6.91 0.00 0.00 3.95
2441 5374 6.182634 AGATAATTTTATTGCGTGACGTTCG 58.817 36.000 6.91 9.19 0.00 3.95
2448 5381 2.844146 CGTGACGTTCGCTCCAAC 59.156 61.111 0.00 0.00 0.00 3.77
2449 5382 1.660575 CGTGACGTTCGCTCCAACT 60.661 57.895 0.00 0.00 0.00 3.16
2450 5383 1.213094 CGTGACGTTCGCTCCAACTT 61.213 55.000 0.00 0.00 0.00 2.66
2451 5384 0.935196 GTGACGTTCGCTCCAACTTT 59.065 50.000 0.00 0.00 0.00 2.66
2452 5385 1.070776 GTGACGTTCGCTCCAACTTTC 60.071 52.381 0.00 0.00 0.00 2.62
2453 5386 1.214367 GACGTTCGCTCCAACTTTCA 58.786 50.000 0.00 0.00 0.00 2.69
2454 5387 1.192534 GACGTTCGCTCCAACTTTCAG 59.807 52.381 0.00 0.00 0.00 3.02
2455 5388 1.202486 ACGTTCGCTCCAACTTTCAGA 60.202 47.619 0.00 0.00 0.00 3.27
2456 5389 2.069273 CGTTCGCTCCAACTTTCAGAT 58.931 47.619 0.00 0.00 0.00 2.90
2457 5390 3.250744 CGTTCGCTCCAACTTTCAGATA 58.749 45.455 0.00 0.00 0.00 1.98
2458 5391 3.678072 CGTTCGCTCCAACTTTCAGATAA 59.322 43.478 0.00 0.00 0.00 1.75
2459 5392 4.330074 CGTTCGCTCCAACTTTCAGATAAT 59.670 41.667 0.00 0.00 0.00 1.28
2460 5393 5.163854 CGTTCGCTCCAACTTTCAGATAATT 60.164 40.000 0.00 0.00 0.00 1.40
2461 5394 6.612306 GTTCGCTCCAACTTTCAGATAATTT 58.388 36.000 0.00 0.00 0.00 1.82
2462 5395 6.182039 TCGCTCCAACTTTCAGATAATTTG 57.818 37.500 0.00 0.00 0.00 2.32
2463 5396 5.705441 TCGCTCCAACTTTCAGATAATTTGT 59.295 36.000 0.00 0.00 0.00 2.83
2464 5397 6.876789 TCGCTCCAACTTTCAGATAATTTGTA 59.123 34.615 0.00 0.00 0.00 2.41
2465 5398 6.961554 CGCTCCAACTTTCAGATAATTTGTAC 59.038 38.462 0.00 0.00 0.00 2.90
2466 5399 7.360861 CGCTCCAACTTTCAGATAATTTGTACA 60.361 37.037 0.00 0.00 0.00 2.90
2467 5400 7.750903 GCTCCAACTTTCAGATAATTTGTACAC 59.249 37.037 0.00 0.00 0.00 2.90
2468 5401 8.918202 TCCAACTTTCAGATAATTTGTACACT 57.082 30.769 0.00 0.00 0.00 3.55
2469 5402 9.349713 TCCAACTTTCAGATAATTTGTACACTT 57.650 29.630 0.00 0.00 0.00 3.16
2470 5403 9.965824 CCAACTTTCAGATAATTTGTACACTTT 57.034 29.630 0.00 0.00 0.00 2.66
2482 5415 7.778470 ATTTGTACACTTTATAGCTCTCAGC 57.222 36.000 0.00 0.00 42.84 4.26
2483 5416 5.914898 TGTACACTTTATAGCTCTCAGCA 57.085 39.130 0.00 0.00 45.56 4.41
2484 5417 6.280855 TGTACACTTTATAGCTCTCAGCAA 57.719 37.500 0.00 0.00 45.56 3.91
2485 5418 6.697395 TGTACACTTTATAGCTCTCAGCAAA 58.303 36.000 0.00 0.00 45.56 3.68
2486 5419 7.158697 TGTACACTTTATAGCTCTCAGCAAAA 58.841 34.615 0.00 0.00 45.56 2.44
2487 5420 7.659799 TGTACACTTTATAGCTCTCAGCAAAAA 59.340 33.333 0.00 0.00 45.56 1.94
2507 5440 5.930837 AAAAGACAAATTGGGTCAGAACA 57.069 34.783 11.72 0.00 37.74 3.18
2508 5441 5.520376 AAAGACAAATTGGGTCAGAACAG 57.480 39.130 11.72 0.00 37.74 3.16
2509 5442 4.170468 AGACAAATTGGGTCAGAACAGT 57.830 40.909 11.72 0.00 37.74 3.55
2510 5443 5.304686 AGACAAATTGGGTCAGAACAGTA 57.695 39.130 11.72 0.00 37.74 2.74
2511 5444 5.063880 AGACAAATTGGGTCAGAACAGTAC 58.936 41.667 11.72 0.00 37.74 2.73
2512 5445 4.787551 ACAAATTGGGTCAGAACAGTACA 58.212 39.130 0.00 0.00 0.00 2.90
2513 5446 5.197451 ACAAATTGGGTCAGAACAGTACAA 58.803 37.500 0.00 0.00 0.00 2.41
2514 5447 5.299279 ACAAATTGGGTCAGAACAGTACAAG 59.701 40.000 0.00 0.00 0.00 3.16
2515 5448 4.974645 ATTGGGTCAGAACAGTACAAGA 57.025 40.909 0.00 0.00 0.00 3.02
2516 5449 4.764050 TTGGGTCAGAACAGTACAAGAA 57.236 40.909 0.00 0.00 0.00 2.52
2517 5450 4.067972 TGGGTCAGAACAGTACAAGAAC 57.932 45.455 0.00 0.00 0.00 3.01
2518 5451 3.452990 TGGGTCAGAACAGTACAAGAACA 59.547 43.478 0.00 0.00 0.00 3.18
2519 5452 4.102524 TGGGTCAGAACAGTACAAGAACAT 59.897 41.667 0.00 0.00 0.00 2.71
2520 5453 5.063880 GGGTCAGAACAGTACAAGAACATT 58.936 41.667 0.00 0.00 0.00 2.71
2521 5454 6.183361 TGGGTCAGAACAGTACAAGAACATTA 60.183 38.462 0.00 0.00 0.00 1.90
2522 5455 6.708949 GGGTCAGAACAGTACAAGAACATTAA 59.291 38.462 0.00 0.00 0.00 1.40
2523 5456 7.227910 GGGTCAGAACAGTACAAGAACATTAAA 59.772 37.037 0.00 0.00 0.00 1.52
2524 5457 8.068380 GGTCAGAACAGTACAAGAACATTAAAC 58.932 37.037 0.00 0.00 0.00 2.01
2525 5458 8.827677 GTCAGAACAGTACAAGAACATTAAACT 58.172 33.333 0.00 0.00 0.00 2.66
2526 5459 9.391006 TCAGAACAGTACAAGAACATTAAACTT 57.609 29.630 0.00 0.00 0.00 2.66
2549 5482 5.855740 TTTTACAAACCCCGAATTTGTCT 57.144 34.783 12.84 0.00 44.97 3.41
2550 5483 5.855740 TTTACAAACCCCGAATTTGTCTT 57.144 34.783 12.84 0.00 44.97 3.01
2551 5484 5.855740 TTACAAACCCCGAATTTGTCTTT 57.144 34.783 12.84 0.00 44.97 2.52
2552 5485 4.746535 ACAAACCCCGAATTTGTCTTTT 57.253 36.364 6.00 0.00 44.97 2.27
2553 5486 5.092554 ACAAACCCCGAATTTGTCTTTTT 57.907 34.783 6.00 0.00 44.97 1.94
2569 5502 2.831685 TTTTTGCCGAGAGCTACTCA 57.168 45.000 11.93 0.00 45.14 3.41
2570 5503 2.370281 TTTTGCCGAGAGCTACTCAG 57.630 50.000 11.93 3.88 45.14 3.35
2571 5504 1.545841 TTTGCCGAGAGCTACTCAGA 58.454 50.000 11.93 0.00 45.14 3.27
2572 5505 0.811915 TTGCCGAGAGCTACTCAGAC 59.188 55.000 11.93 3.46 45.14 3.51
2573 5506 1.353804 GCCGAGAGCTACTCAGACG 59.646 63.158 11.93 0.60 45.14 4.18
2574 5507 1.370587 GCCGAGAGCTACTCAGACGT 61.371 60.000 11.93 0.00 45.14 4.34
2575 5508 0.653636 CCGAGAGCTACTCAGACGTC 59.346 60.000 7.70 7.70 45.14 4.34
2576 5509 1.647346 CGAGAGCTACTCAGACGTCT 58.353 55.000 13.58 13.58 45.14 4.18
2577 5510 2.481622 CCGAGAGCTACTCAGACGTCTA 60.482 54.545 19.57 0.98 45.14 2.59
2578 5511 3.188492 CGAGAGCTACTCAGACGTCTAA 58.812 50.000 19.57 1.94 45.14 2.10
2579 5512 3.617706 CGAGAGCTACTCAGACGTCTAAA 59.382 47.826 19.57 8.71 45.14 1.85
2580 5513 4.271533 CGAGAGCTACTCAGACGTCTAAAT 59.728 45.833 19.57 8.76 45.14 1.40
2581 5514 5.493133 AGAGCTACTCAGACGTCTAAATG 57.507 43.478 19.57 7.00 32.06 2.32
2582 5515 5.186942 AGAGCTACTCAGACGTCTAAATGA 58.813 41.667 19.57 11.35 32.06 2.57
2583 5516 5.825679 AGAGCTACTCAGACGTCTAAATGAT 59.174 40.000 19.57 6.49 32.06 2.45
2584 5517 6.017440 AGAGCTACTCAGACGTCTAAATGATC 60.017 42.308 19.57 14.77 32.06 2.92
2585 5518 5.825679 AGCTACTCAGACGTCTAAATGATCT 59.174 40.000 19.57 7.54 0.00 2.75
2586 5519 5.912396 GCTACTCAGACGTCTAAATGATCTG 59.088 44.000 19.57 3.36 38.51 2.90
2587 5520 6.238511 GCTACTCAGACGTCTAAATGATCTGA 60.239 42.308 19.57 7.94 42.63 3.27
2588 5521 6.516739 ACTCAGACGTCTAAATGATCTGAA 57.483 37.500 19.57 0.00 43.81 3.02
2589 5522 6.925211 ACTCAGACGTCTAAATGATCTGAAA 58.075 36.000 19.57 0.00 43.81 2.69
2590 5523 7.378966 ACTCAGACGTCTAAATGATCTGAAAA 58.621 34.615 19.57 0.00 43.81 2.29
2591 5524 8.037758 ACTCAGACGTCTAAATGATCTGAAAAT 58.962 33.333 19.57 0.00 43.81 1.82
2592 5525 8.412608 TCAGACGTCTAAATGATCTGAAAATC 57.587 34.615 19.57 0.00 42.08 2.17
2593 5526 7.220875 TCAGACGTCTAAATGATCTGAAAATCG 59.779 37.037 19.57 0.00 42.08 3.34
2594 5527 6.477033 AGACGTCTAAATGATCTGAAAATCGG 59.523 38.462 18.46 0.00 0.00 4.18
2595 5528 6.338146 ACGTCTAAATGATCTGAAAATCGGA 58.662 36.000 0.00 0.00 36.02 4.55
2596 5529 6.477033 ACGTCTAAATGATCTGAAAATCGGAG 59.523 38.462 0.00 0.00 34.87 4.63
2597 5530 6.563010 CGTCTAAATGATCTGAAAATCGGAGC 60.563 42.308 0.00 0.00 38.58 4.70
2598 5531 4.542662 AAATGATCTGAAAATCGGAGCG 57.457 40.909 0.00 0.00 40.84 5.03
2599 5532 1.939974 TGATCTGAAAATCGGAGCGG 58.060 50.000 0.00 0.00 40.84 5.52
2600 5533 1.480545 TGATCTGAAAATCGGAGCGGA 59.519 47.619 0.00 0.00 40.84 5.54
2601 5534 1.861575 GATCTGAAAATCGGAGCGGAC 59.138 52.381 0.00 0.00 34.87 4.79
2602 5535 0.606096 TCTGAAAATCGGAGCGGACA 59.394 50.000 0.00 0.00 0.00 4.02
2603 5536 0.721718 CTGAAAATCGGAGCGGACAC 59.278 55.000 0.00 0.00 0.00 3.67
2604 5537 0.672401 TGAAAATCGGAGCGGACACC 60.672 55.000 0.00 0.00 0.00 4.16
2605 5538 0.672401 GAAAATCGGAGCGGACACCA 60.672 55.000 0.00 0.00 0.00 4.17
2606 5539 0.250553 AAAATCGGAGCGGACACCAA 60.251 50.000 0.00 0.00 0.00 3.67
2607 5540 0.250553 AAATCGGAGCGGACACCAAA 60.251 50.000 0.00 0.00 0.00 3.28
2608 5541 0.250553 AATCGGAGCGGACACCAAAA 60.251 50.000 0.00 0.00 0.00 2.44
2609 5542 0.035439 ATCGGAGCGGACACCAAAAT 60.035 50.000 0.00 0.00 0.00 1.82
2610 5543 0.609151 TCGGAGCGGACACCAAAATA 59.391 50.000 0.00 0.00 0.00 1.40
2611 5544 1.208535 TCGGAGCGGACACCAAAATAT 59.791 47.619 0.00 0.00 0.00 1.28
2612 5545 1.597663 CGGAGCGGACACCAAAATATC 59.402 52.381 0.00 0.00 0.00 1.63
2613 5546 2.741878 CGGAGCGGACACCAAAATATCT 60.742 50.000 0.00 0.00 0.00 1.98
2614 5547 3.491964 CGGAGCGGACACCAAAATATCTA 60.492 47.826 0.00 0.00 0.00 1.98
2615 5548 3.808174 GGAGCGGACACCAAAATATCTAC 59.192 47.826 0.00 0.00 0.00 2.59
2616 5549 3.805207 AGCGGACACCAAAATATCTACC 58.195 45.455 0.00 0.00 0.00 3.18
2617 5550 3.199071 AGCGGACACCAAAATATCTACCA 59.801 43.478 0.00 0.00 0.00 3.25
2618 5551 4.134563 GCGGACACCAAAATATCTACCAT 58.865 43.478 0.00 0.00 0.00 3.55
2619 5552 4.024048 GCGGACACCAAAATATCTACCATG 60.024 45.833 0.00 0.00 0.00 3.66
2620 5553 5.364778 CGGACACCAAAATATCTACCATGA 58.635 41.667 0.00 0.00 0.00 3.07
2621 5554 5.820423 CGGACACCAAAATATCTACCATGAA 59.180 40.000 0.00 0.00 0.00 2.57
2622 5555 6.317642 CGGACACCAAAATATCTACCATGAAA 59.682 38.462 0.00 0.00 0.00 2.69
2623 5556 7.148154 CGGACACCAAAATATCTACCATGAAAA 60.148 37.037 0.00 0.00 0.00 2.29
2624 5557 8.527810 GGACACCAAAATATCTACCATGAAAAA 58.472 33.333 0.00 0.00 0.00 1.94
2625 5558 9.573133 GACACCAAAATATCTACCATGAAAAAG 57.427 33.333 0.00 0.00 0.00 2.27
2626 5559 9.308000 ACACCAAAATATCTACCATGAAAAAGA 57.692 29.630 0.00 0.00 0.00 2.52
2694 5627 5.940192 TTTTTGTCAACGCAGATGTAGAT 57.060 34.783 0.00 0.00 0.00 1.98
2695 5628 4.926860 TTTGTCAACGCAGATGTAGATG 57.073 40.909 0.00 0.00 0.00 2.90
2696 5629 3.866883 TGTCAACGCAGATGTAGATGA 57.133 42.857 0.00 0.00 0.00 2.92
2697 5630 3.774066 TGTCAACGCAGATGTAGATGAG 58.226 45.455 0.00 0.00 0.00 2.90
2698 5631 2.537625 GTCAACGCAGATGTAGATGAGC 59.462 50.000 0.00 0.00 0.00 4.26
2699 5632 1.863454 CAACGCAGATGTAGATGAGCC 59.137 52.381 0.00 0.00 0.00 4.70
2700 5633 1.407936 ACGCAGATGTAGATGAGCCT 58.592 50.000 0.00 0.00 0.00 4.58
2701 5634 1.068281 ACGCAGATGTAGATGAGCCTG 59.932 52.381 0.00 0.00 0.00 4.85
2702 5635 1.604947 CGCAGATGTAGATGAGCCTGG 60.605 57.143 0.00 0.00 0.00 4.45
2703 5636 1.270732 GCAGATGTAGATGAGCCTGGG 60.271 57.143 0.00 0.00 0.00 4.45
2704 5637 2.045524 CAGATGTAGATGAGCCTGGGT 58.954 52.381 0.00 0.00 0.00 4.51
2705 5638 2.437281 CAGATGTAGATGAGCCTGGGTT 59.563 50.000 0.00 0.00 0.00 4.11
2706 5639 3.643320 CAGATGTAGATGAGCCTGGGTTA 59.357 47.826 0.00 0.00 0.00 2.85
2707 5640 4.101585 CAGATGTAGATGAGCCTGGGTTAA 59.898 45.833 0.00 0.00 0.00 2.01
2708 5641 4.346418 AGATGTAGATGAGCCTGGGTTAAG 59.654 45.833 0.00 0.00 0.00 1.85
2709 5642 3.719871 TGTAGATGAGCCTGGGTTAAGA 58.280 45.455 0.00 0.00 0.00 2.10
2710 5643 4.101114 TGTAGATGAGCCTGGGTTAAGAA 58.899 43.478 0.00 0.00 0.00 2.52
2711 5644 4.534500 TGTAGATGAGCCTGGGTTAAGAAA 59.466 41.667 0.00 0.00 0.00 2.52
2712 5645 4.870021 AGATGAGCCTGGGTTAAGAAAT 57.130 40.909 0.00 0.00 0.00 2.17
2713 5646 4.530875 AGATGAGCCTGGGTTAAGAAATG 58.469 43.478 0.00 0.00 0.00 2.32
2714 5647 3.085952 TGAGCCTGGGTTAAGAAATGG 57.914 47.619 0.00 0.00 0.00 3.16
2715 5648 2.647299 TGAGCCTGGGTTAAGAAATGGA 59.353 45.455 0.00 0.00 0.00 3.41
2716 5649 3.269381 TGAGCCTGGGTTAAGAAATGGAT 59.731 43.478 0.00 0.00 0.00 3.41
2717 5650 4.476846 TGAGCCTGGGTTAAGAAATGGATA 59.523 41.667 0.00 0.00 0.00 2.59
2718 5651 5.134339 TGAGCCTGGGTTAAGAAATGGATAT 59.866 40.000 0.00 0.00 0.00 1.63
2719 5652 6.030727 AGCCTGGGTTAAGAAATGGATATT 57.969 37.500 0.00 0.00 0.00 1.28
2720 5653 6.443832 AGCCTGGGTTAAGAAATGGATATTT 58.556 36.000 0.00 0.00 39.16 1.40
2721 5654 6.324770 AGCCTGGGTTAAGAAATGGATATTTG 59.675 38.462 0.00 0.00 36.66 2.32
2722 5655 6.462909 GCCTGGGTTAAGAAATGGATATTTGG 60.463 42.308 0.00 0.00 36.66 3.28
2723 5656 6.041979 CCTGGGTTAAGAAATGGATATTTGGG 59.958 42.308 0.00 0.00 36.66 4.12
2724 5657 6.746894 TGGGTTAAGAAATGGATATTTGGGA 58.253 36.000 0.00 0.00 36.66 4.37
2725 5658 6.838612 TGGGTTAAGAAATGGATATTTGGGAG 59.161 38.462 0.00 0.00 36.66 4.30
2726 5659 6.267699 GGGTTAAGAAATGGATATTTGGGAGG 59.732 42.308 0.00 0.00 36.66 4.30
2727 5660 6.839134 GGTTAAGAAATGGATATTTGGGAGGT 59.161 38.462 0.00 0.00 36.66 3.85
2728 5661 7.344612 GGTTAAGAAATGGATATTTGGGAGGTT 59.655 37.037 0.00 0.00 36.66 3.50
2729 5662 8.758829 GTTAAGAAATGGATATTTGGGAGGTTT 58.241 33.333 0.00 0.00 36.66 3.27
2730 5663 6.796785 AGAAATGGATATTTGGGAGGTTTG 57.203 37.500 0.00 0.00 36.66 2.93
2731 5664 5.662657 AGAAATGGATATTTGGGAGGTTTGG 59.337 40.000 0.00 0.00 36.66 3.28
2732 5665 3.396685 TGGATATTTGGGAGGTTTGGG 57.603 47.619 0.00 0.00 0.00 4.12
2733 5666 2.657459 TGGATATTTGGGAGGTTTGGGT 59.343 45.455 0.00 0.00 0.00 4.51
2734 5667 3.859248 TGGATATTTGGGAGGTTTGGGTA 59.141 43.478 0.00 0.00 0.00 3.69
2735 5668 4.484270 TGGATATTTGGGAGGTTTGGGTAT 59.516 41.667 0.00 0.00 0.00 2.73
2745 5678 5.012251 GGGAGGTTTGGGTATTCTCTATCTC 59.988 48.000 0.00 0.00 0.00 2.75
2776 5709 3.557228 ATGAGGCTCTGCTCTTAAAGG 57.443 47.619 16.72 0.00 0.00 3.11
2777 5710 2.260822 TGAGGCTCTGCTCTTAAAGGT 58.739 47.619 16.72 0.00 0.00 3.50
2785 5718 3.503363 TCTGCTCTTAAAGGTTGCACATG 59.497 43.478 0.00 0.00 0.00 3.21
2795 5728 9.941664 CTTAAAGGTTGCACATGAATTCTATAG 57.058 33.333 7.05 0.00 0.00 1.31
2798 5731 5.530171 AGGTTGCACATGAATTCTATAGCAG 59.470 40.000 7.05 0.00 31.87 4.24
2803 5736 7.444299 TGCACATGAATTCTATAGCAGACATA 58.556 34.615 7.05 0.00 31.12 2.29
2821 5754 6.885918 CAGACATAATATTCCATGGGTGCATA 59.114 38.462 13.02 4.25 0.00 3.14
2822 5755 6.886459 AGACATAATATTCCATGGGTGCATAC 59.114 38.462 13.02 0.00 0.00 2.39
2823 5756 6.793478 ACATAATATTCCATGGGTGCATACT 58.207 36.000 13.02 0.00 0.00 2.12
2824 5757 7.927788 ACATAATATTCCATGGGTGCATACTA 58.072 34.615 13.02 0.00 0.00 1.82
2825 5758 8.560039 ACATAATATTCCATGGGTGCATACTAT 58.440 33.333 13.02 1.30 0.00 2.12
2826 5759 9.060347 CATAATATTCCATGGGTGCATACTATC 57.940 37.037 13.02 0.00 0.00 2.08
2827 5760 4.999469 ATTCCATGGGTGCATACTATCA 57.001 40.909 13.02 0.00 0.00 2.15
2828 5761 4.999469 TTCCATGGGTGCATACTATCAT 57.001 40.909 13.02 0.00 0.00 2.45
2829 5762 4.290711 TCCATGGGTGCATACTATCATG 57.709 45.455 13.02 0.00 33.70 3.07
2830 5763 3.909364 TCCATGGGTGCATACTATCATGA 59.091 43.478 13.02 0.00 34.70 3.07
2831 5764 4.537288 TCCATGGGTGCATACTATCATGAT 59.463 41.667 13.02 13.81 34.70 2.45
2832 5765 5.725822 TCCATGGGTGCATACTATCATGATA 59.274 40.000 13.02 14.64 34.70 2.15
2833 5766 6.053650 CCATGGGTGCATACTATCATGATAG 58.946 44.000 32.19 32.19 44.79 2.08
2834 5767 6.126968 CCATGGGTGCATACTATCATGATAGA 60.127 42.308 37.76 25.18 42.55 1.98
2835 5768 6.535963 TGGGTGCATACTATCATGATAGAG 57.464 41.667 37.76 28.06 42.55 2.43
2836 5769 6.019108 TGGGTGCATACTATCATGATAGAGT 58.981 40.000 37.76 26.34 42.55 3.24
2837 5770 6.071165 TGGGTGCATACTATCATGATAGAGTG 60.071 42.308 37.76 32.29 42.55 3.51
2838 5771 5.809562 GGTGCATACTATCATGATAGAGTGC 59.190 44.000 36.75 36.75 44.83 4.40
2839 5772 5.809562 GTGCATACTATCATGATAGAGTGCC 59.190 44.000 37.95 31.63 44.49 5.01
2840 5773 5.481473 TGCATACTATCATGATAGAGTGCCA 59.519 40.000 37.95 30.77 44.49 4.92
2841 5774 5.809562 GCATACTATCATGATAGAGTGCCAC 59.190 44.000 35.44 23.20 42.55 5.01
2842 5775 6.573094 GCATACTATCATGATAGAGTGCCACA 60.573 42.308 35.44 20.14 42.55 4.17
2843 5776 7.554211 CATACTATCATGATAGAGTGCCACAT 58.446 38.462 37.76 20.53 42.55 3.21
2844 5777 5.791666 ACTATCATGATAGAGTGCCACATG 58.208 41.667 37.76 16.21 42.55 3.21
2845 5778 2.842457 TCATGATAGAGTGCCACATGC 58.158 47.619 0.00 0.00 38.39 4.06
2846 5779 2.436911 TCATGATAGAGTGCCACATGCT 59.563 45.455 0.00 0.00 42.00 3.79
2847 5780 3.642848 TCATGATAGAGTGCCACATGCTA 59.357 43.478 0.00 0.00 42.00 3.49
2848 5781 3.459232 TGATAGAGTGCCACATGCTAC 57.541 47.619 0.00 0.00 42.00 3.58
2849 5782 3.033909 TGATAGAGTGCCACATGCTACT 58.966 45.455 0.00 0.00 42.00 2.57
2850 5783 3.452264 TGATAGAGTGCCACATGCTACTT 59.548 43.478 0.00 0.00 42.00 2.24
2851 5784 2.867109 AGAGTGCCACATGCTACTTT 57.133 45.000 0.00 0.00 42.00 2.66
2852 5785 2.430465 AGAGTGCCACATGCTACTTTG 58.570 47.619 0.00 0.00 42.00 2.77
2853 5786 2.154462 GAGTGCCACATGCTACTTTGT 58.846 47.619 0.00 0.00 42.00 2.83
2854 5787 1.881973 AGTGCCACATGCTACTTTGTG 59.118 47.619 0.00 0.00 42.25 3.33
2855 5788 1.608590 GTGCCACATGCTACTTTGTGT 59.391 47.619 0.00 0.00 41.27 3.72
2856 5789 1.608109 TGCCACATGCTACTTTGTGTG 59.392 47.619 0.00 0.00 41.27 3.82
2865 5798 4.783764 GCTACTTTGTGTGGCCTATTTT 57.216 40.909 3.32 0.00 45.78 1.82
2866 5799 4.485163 GCTACTTTGTGTGGCCTATTTTG 58.515 43.478 3.32 0.00 45.78 2.44
2867 5800 4.618227 GCTACTTTGTGTGGCCTATTTTGG 60.618 45.833 3.32 0.00 45.78 3.28
2868 5801 3.304829 ACTTTGTGTGGCCTATTTTGGT 58.695 40.909 3.32 0.00 0.00 3.67
2869 5802 3.069443 ACTTTGTGTGGCCTATTTTGGTG 59.931 43.478 3.32 0.00 0.00 4.17
2870 5803 1.626686 TGTGTGGCCTATTTTGGTGG 58.373 50.000 3.32 0.00 0.00 4.61
2871 5804 1.145945 TGTGTGGCCTATTTTGGTGGA 59.854 47.619 3.32 0.00 0.00 4.02
2872 5805 2.243810 GTGTGGCCTATTTTGGTGGAA 58.756 47.619 3.32 0.00 0.00 3.53
2873 5806 2.630580 GTGTGGCCTATTTTGGTGGAAA 59.369 45.455 3.32 0.00 0.00 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.816136 TCGAATGTACTTCCACACATCATAT 58.184 36.000 0.00 0.00 34.32 1.78
4 5 4.529109 TCGAATGTACTTCCACACATCA 57.471 40.909 0.00 0.00 34.32 3.07
6 7 7.272244 TCATTATCGAATGTACTTCCACACAT 58.728 34.615 0.00 0.00 42.71 3.21
7 8 6.635755 TCATTATCGAATGTACTTCCACACA 58.364 36.000 0.00 0.00 42.71 3.72
8 9 7.534085 TTCATTATCGAATGTACTTCCACAC 57.466 36.000 0.00 0.00 42.71 3.82
9 10 8.204160 AGATTCATTATCGAATGTACTTCCACA 58.796 33.333 0.00 0.00 42.71 4.17
10 11 8.594881 AGATTCATTATCGAATGTACTTCCAC 57.405 34.615 0.00 0.00 42.71 4.02
65 66 9.882996 CTTCGCATATTAGCTTTGATCAAAATA 57.117 29.630 20.82 15.36 0.00 1.40
66 67 8.408601 ACTTCGCATATTAGCTTTGATCAAAAT 58.591 29.630 20.82 13.82 0.00 1.82
67 68 7.761409 ACTTCGCATATTAGCTTTGATCAAAA 58.239 30.769 20.82 7.48 0.00 2.44
68 69 7.320443 ACTTCGCATATTAGCTTTGATCAAA 57.680 32.000 19.45 19.45 0.00 2.69
69 70 6.925610 ACTTCGCATATTAGCTTTGATCAA 57.074 33.333 3.38 3.38 0.00 2.57
70 71 7.710907 AGTTACTTCGCATATTAGCTTTGATCA 59.289 33.333 0.00 0.00 0.00 2.92
71 72 8.077836 AGTTACTTCGCATATTAGCTTTGATC 57.922 34.615 0.00 0.00 0.00 2.92
72 73 9.542462 TTAGTTACTTCGCATATTAGCTTTGAT 57.458 29.630 0.00 0.00 0.00 2.57
73 74 8.936070 TTAGTTACTTCGCATATTAGCTTTGA 57.064 30.769 0.00 0.00 0.00 2.69
74 75 9.982291 TTTTAGTTACTTCGCATATTAGCTTTG 57.018 29.630 0.00 0.00 0.00 2.77
76 77 9.983804 GTTTTTAGTTACTTCGCATATTAGCTT 57.016 29.630 0.00 0.00 0.00 3.74
77 78 8.325997 CGTTTTTAGTTACTTCGCATATTAGCT 58.674 33.333 0.00 0.00 0.00 3.32
78 79 7.581600 CCGTTTTTAGTTACTTCGCATATTAGC 59.418 37.037 0.00 0.00 0.00 3.09
79 80 8.810427 TCCGTTTTTAGTTACTTCGCATATTAG 58.190 33.333 0.00 0.00 0.00 1.73
80 81 8.700722 TCCGTTTTTAGTTACTTCGCATATTA 57.299 30.769 0.00 0.00 0.00 0.98
81 82 7.201582 CCTCCGTTTTTAGTTACTTCGCATATT 60.202 37.037 0.00 0.00 0.00 1.28
82 83 6.257193 CCTCCGTTTTTAGTTACTTCGCATAT 59.743 38.462 0.00 0.00 0.00 1.78
83 84 5.577945 CCTCCGTTTTTAGTTACTTCGCATA 59.422 40.000 0.00 0.00 0.00 3.14
84 85 4.390909 CCTCCGTTTTTAGTTACTTCGCAT 59.609 41.667 0.00 0.00 0.00 4.73
85 86 3.742369 CCTCCGTTTTTAGTTACTTCGCA 59.258 43.478 0.00 0.00 0.00 5.10
86 87 3.124128 CCCTCCGTTTTTAGTTACTTCGC 59.876 47.826 0.00 0.00 0.00 4.70
87 88 4.559153 TCCCTCCGTTTTTAGTTACTTCG 58.441 43.478 0.00 0.00 0.00 3.79
88 89 5.545588 ACTCCCTCCGTTTTTAGTTACTTC 58.454 41.667 0.00 0.00 0.00 3.01
89 90 5.557576 ACTCCCTCCGTTTTTAGTTACTT 57.442 39.130 0.00 0.00 0.00 2.24
90 91 5.777223 AGTACTCCCTCCGTTTTTAGTTACT 59.223 40.000 0.00 0.00 0.00 2.24
91 92 6.030548 AGTACTCCCTCCGTTTTTAGTTAC 57.969 41.667 0.00 0.00 0.00 2.50
92 93 7.775053 TTAGTACTCCCTCCGTTTTTAGTTA 57.225 36.000 0.00 0.00 0.00 2.24
93 94 6.670695 TTAGTACTCCCTCCGTTTTTAGTT 57.329 37.500 0.00 0.00 0.00 2.24
94 95 6.864151 ATTAGTACTCCCTCCGTTTTTAGT 57.136 37.500 0.00 0.00 0.00 2.24
95 96 9.828039 AATTATTAGTACTCCCTCCGTTTTTAG 57.172 33.333 0.00 0.00 0.00 1.85
98 99 9.828039 CTTAATTATTAGTACTCCCTCCGTTTT 57.172 33.333 0.00 0.00 0.00 2.43
99 100 8.427276 CCTTAATTATTAGTACTCCCTCCGTTT 58.573 37.037 0.00 0.00 0.00 3.60
100 101 7.566509 ACCTTAATTATTAGTACTCCCTCCGTT 59.433 37.037 0.00 0.00 0.00 4.44
101 102 7.071917 ACCTTAATTATTAGTACTCCCTCCGT 58.928 38.462 0.00 0.00 0.00 4.69
102 103 7.536159 ACCTTAATTATTAGTACTCCCTCCG 57.464 40.000 0.00 0.00 0.00 4.63
103 104 8.155510 CCAACCTTAATTATTAGTACTCCCTCC 58.844 40.741 0.00 0.00 0.00 4.30
104 105 8.712103 ACCAACCTTAATTATTAGTACTCCCTC 58.288 37.037 0.00 0.00 0.00 4.30
105 106 8.491958 CACCAACCTTAATTATTAGTACTCCCT 58.508 37.037 0.00 0.00 0.00 4.20
106 107 8.270030 ACACCAACCTTAATTATTAGTACTCCC 58.730 37.037 0.00 0.00 0.00 4.30
128 129 1.066430 TCAAGGTCAATCGGCTACACC 60.066 52.381 0.00 0.00 0.00 4.16
135 136 3.189287 CCTTCTTGTTCAAGGTCAATCGG 59.811 47.826 11.82 1.03 36.40 4.18
157 158 3.476295 TGCATTGCATCGTCTTCTTTC 57.524 42.857 7.38 0.00 31.71 2.62
182 183 2.662791 CGAGCAAACCATTGAAGTCGTG 60.663 50.000 0.00 0.00 38.94 4.35
185 186 3.686726 AGATCGAGCAAACCATTGAAGTC 59.313 43.478 2.38 0.00 38.94 3.01
229 230 0.593128 AAGCACGGCAACTGAATGTC 59.407 50.000 0.00 0.00 0.00 3.06
277 278 8.979574 CCAACACTAACTAAAACTGTCTCTAAG 58.020 37.037 0.00 0.00 0.00 2.18
316 578 1.282875 GTTCTTTCGGTGGTGCTGC 59.717 57.895 0.00 0.00 0.00 5.25
544 825 7.628769 TGTGCAATTAGAGATGATTAGCAAA 57.371 32.000 0.00 0.00 0.00 3.68
669 1627 8.438513 GGGTGTCGTTTCTTAACTAAATACTTC 58.561 37.037 0.00 0.00 31.89 3.01
806 1791 4.160065 AGCATATGAGATCGAGAGGAATGG 59.840 45.833 6.97 0.00 0.00 3.16
914 1925 2.443416 TCTTCTCACGCACCTAGCTAA 58.557 47.619 0.00 0.00 42.61 3.09
934 1945 8.446394 ACAGGGAGAGATGAATAAATGATTGAT 58.554 33.333 0.00 0.00 0.00 2.57
1049 2062 3.489636 TCCAGTCGGAATTGGCCA 58.510 55.556 0.00 0.00 38.83 5.36
1108 2124 6.841601 TCTTGATTAGCTAGCCCATTGTATT 58.158 36.000 12.13 0.00 0.00 1.89
1110 2126 5.366768 ACTCTTGATTAGCTAGCCCATTGTA 59.633 40.000 12.13 0.00 0.00 2.41
1213 2442 1.336125 TGCACATGCGAACACATTCAA 59.664 42.857 0.00 0.00 45.83 2.69
1224 2454 1.002142 CACCTGGATATTGCACATGCG 60.002 52.381 0.00 0.00 45.83 4.73
1258 2488 0.319211 CCGCAACGTACAGGTTCTCA 60.319 55.000 0.00 0.00 0.00 3.27
1279 2509 1.798283 CCACGTTGTTGATCCCGTAA 58.202 50.000 0.00 0.00 31.42 3.18
1354 2584 1.470098 GATTTGCTGGTGTCGCAGATT 59.530 47.619 0.00 0.00 40.67 2.40
1372 2602 0.603707 CGGGCTTGCACATATCCGAT 60.604 55.000 7.18 0.00 39.83 4.18
1441 2671 4.760047 CCGTTGTCGCTGGGGAGG 62.760 72.222 0.00 0.00 35.54 4.30
1702 2932 2.116238 GCACCCCAGTTCCTAGACATA 58.884 52.381 0.00 0.00 0.00 2.29
1708 2938 0.770557 AGTTGGCACCCCAGTTCCTA 60.771 55.000 0.00 0.00 43.37 2.94
1747 2977 4.007644 CTGAGTGCCTGCCCGACA 62.008 66.667 0.00 0.00 0.00 4.35
1750 2980 4.711949 AAGCTGAGTGCCTGCCCG 62.712 66.667 0.00 0.00 44.23 6.13
1837 3067 1.270625 CGCCAGGTAGTGAAGGTTTGA 60.271 52.381 0.00 0.00 0.00 2.69
2054 4803 5.808366 TGTGGGGTTGCATATTTTTACAA 57.192 34.783 0.00 0.00 0.00 2.41
2078 4827 4.837093 TTCCCGTAGTGAATCCTTGAAT 57.163 40.909 0.00 0.00 0.00 2.57
2113 4865 2.355197 TGACAAATACTCCCACGCATG 58.645 47.619 0.00 0.00 0.00 4.06
2120 4872 4.695928 GGAGAACACTTGACAAATACTCCC 59.304 45.833 0.00 0.00 36.42 4.30
2126 4878 3.885297 CTGTGGGAGAACACTTGACAAAT 59.115 43.478 0.00 0.00 41.84 2.32
2140 4892 0.673985 TTGTCGAGTGTCTGTGGGAG 59.326 55.000 0.00 0.00 0.00 4.30
2144 4896 5.645624 AGATCTATTTGTCGAGTGTCTGTG 58.354 41.667 0.00 0.00 0.00 3.66
2147 4899 5.578727 GCAAAGATCTATTTGTCGAGTGTCT 59.421 40.000 8.56 0.00 41.31 3.41
2149 4901 4.631813 GGCAAAGATCTATTTGTCGAGTGT 59.368 41.667 8.56 0.00 41.31 3.55
2178 4931 6.042777 TGTTTGCATGGTGTATTTTCGAAAA 58.957 32.000 24.43 24.43 0.00 2.29
2194 5122 3.256383 TGCAGTTGCTTAGATGTTTGCAT 59.744 39.130 5.62 0.00 42.66 3.96
2195 5123 2.622470 TGCAGTTGCTTAGATGTTTGCA 59.378 40.909 5.62 0.00 42.66 4.08
2201 5129 5.353400 TGAATTCTCTGCAGTTGCTTAGATG 59.647 40.000 14.67 0.00 42.66 2.90
2232 5160 2.172717 CCGGTCCTTCCTCCATAAACAT 59.827 50.000 0.00 0.00 0.00 2.71
2251 5183 0.523072 CAAGGATGTTGCAGGTTCCG 59.477 55.000 5.54 0.00 33.35 4.30
2272 5204 4.099881 GTCAACAAACCATATCCCATGCAT 59.900 41.667 0.00 0.00 0.00 3.96
2317 5250 2.629656 GGCACCGAATTGCTGCACT 61.630 57.895 0.00 0.00 42.56 4.40
2318 5251 1.305219 TAGGCACCGAATTGCTGCAC 61.305 55.000 0.00 0.00 42.56 4.57
2319 5252 1.002746 TAGGCACCGAATTGCTGCA 60.003 52.632 0.00 0.00 42.56 4.41
2320 5253 1.718757 CCTAGGCACCGAATTGCTGC 61.719 60.000 0.00 0.00 42.56 5.25
2321 5254 1.097547 CCCTAGGCACCGAATTGCTG 61.098 60.000 2.05 0.00 42.56 4.41
2322 5255 1.224592 CCCTAGGCACCGAATTGCT 59.775 57.895 2.05 0.00 42.56 3.91
2323 5256 1.077716 ACCCTAGGCACCGAATTGC 60.078 57.895 2.05 0.00 42.18 3.56
2324 5257 0.251916 TGACCCTAGGCACCGAATTG 59.748 55.000 2.05 0.00 0.00 2.32
2325 5258 1.141053 GATGACCCTAGGCACCGAATT 59.859 52.381 2.05 0.00 0.00 2.17
2326 5259 0.759346 GATGACCCTAGGCACCGAAT 59.241 55.000 2.05 0.00 0.00 3.34
2327 5260 0.325296 AGATGACCCTAGGCACCGAA 60.325 55.000 2.05 0.00 0.00 4.30
2328 5261 1.043116 CAGATGACCCTAGGCACCGA 61.043 60.000 2.05 0.00 0.00 4.69
2329 5262 1.443407 CAGATGACCCTAGGCACCG 59.557 63.158 2.05 0.00 0.00 4.94
2330 5263 1.147153 GCAGATGACCCTAGGCACC 59.853 63.158 2.05 0.00 0.00 5.01
2331 5264 0.462759 GTGCAGATGACCCTAGGCAC 60.463 60.000 2.05 1.77 43.78 5.01
2332 5265 1.626356 GGTGCAGATGACCCTAGGCA 61.626 60.000 2.05 0.00 0.00 4.75
2333 5266 1.147153 GGTGCAGATGACCCTAGGC 59.853 63.158 2.05 0.00 0.00 3.93
2339 5272 2.125106 GACCGGGTGCAGATGACC 60.125 66.667 3.30 0.00 0.00 4.02
2340 5273 1.003839 TTGACCGGGTGCAGATGAC 60.004 57.895 3.30 0.00 0.00 3.06
2341 5274 1.191489 TCTTGACCGGGTGCAGATGA 61.191 55.000 3.30 0.63 0.00 2.92
2342 5275 0.321564 TTCTTGACCGGGTGCAGATG 60.322 55.000 3.30 0.00 0.00 2.90
2343 5276 0.400213 TTTCTTGACCGGGTGCAGAT 59.600 50.000 3.30 0.00 0.00 2.90
2344 5277 0.181587 TTTTCTTGACCGGGTGCAGA 59.818 50.000 3.30 2.16 0.00 4.26
2345 5278 1.028905 TTTTTCTTGACCGGGTGCAG 58.971 50.000 3.30 0.00 0.00 4.41
2346 5279 0.741915 GTTTTTCTTGACCGGGTGCA 59.258 50.000 3.30 0.00 0.00 4.57
2347 5280 0.741915 TGTTTTTCTTGACCGGGTGC 59.258 50.000 3.30 0.00 0.00 5.01
2348 5281 2.621055 TGATGTTTTTCTTGACCGGGTG 59.379 45.455 3.30 0.00 0.00 4.61
2349 5282 2.621526 GTGATGTTTTTCTTGACCGGGT 59.378 45.455 6.32 0.00 0.00 5.28
2350 5283 2.621055 TGTGATGTTTTTCTTGACCGGG 59.379 45.455 6.32 0.00 0.00 5.73
2351 5284 3.980646 TGTGATGTTTTTCTTGACCGG 57.019 42.857 0.00 0.00 0.00 5.28
2352 5285 6.826893 ATTTTGTGATGTTTTTCTTGACCG 57.173 33.333 0.00 0.00 0.00 4.79
2406 5339 9.195411 CGCAATAAAATTATCTACCATGCAATT 57.805 29.630 0.00 0.00 0.00 2.32
2407 5340 8.359642 ACGCAATAAAATTATCTACCATGCAAT 58.640 29.630 0.00 0.00 0.00 3.56
2408 5341 7.647318 CACGCAATAAAATTATCTACCATGCAA 59.353 33.333 0.00 0.00 0.00 4.08
2409 5342 7.012799 TCACGCAATAAAATTATCTACCATGCA 59.987 33.333 0.00 0.00 0.00 3.96
2410 5343 7.323656 GTCACGCAATAAAATTATCTACCATGC 59.676 37.037 0.00 0.00 0.00 4.06
2411 5344 7.530525 CGTCACGCAATAAAATTATCTACCATG 59.469 37.037 0.00 0.00 0.00 3.66
2412 5345 7.225931 ACGTCACGCAATAAAATTATCTACCAT 59.774 33.333 0.00 0.00 0.00 3.55
2413 5346 6.535865 ACGTCACGCAATAAAATTATCTACCA 59.464 34.615 0.00 0.00 0.00 3.25
2414 5347 6.940714 ACGTCACGCAATAAAATTATCTACC 58.059 36.000 0.00 0.00 0.00 3.18
2415 5348 7.314944 CGAACGTCACGCAATAAAATTATCTAC 59.685 37.037 0.00 0.00 0.00 2.59
2416 5349 7.331792 CGAACGTCACGCAATAAAATTATCTA 58.668 34.615 0.00 0.00 0.00 1.98
2417 5350 6.182634 CGAACGTCACGCAATAAAATTATCT 58.817 36.000 0.00 0.00 0.00 1.98
2418 5351 6.388091 CGAACGTCACGCAATAAAATTATC 57.612 37.500 0.00 0.00 0.00 1.75
2431 5364 1.213094 AAGTTGGAGCGAACGTCACG 61.213 55.000 0.00 0.00 0.00 4.35
2432 5365 0.935196 AAAGTTGGAGCGAACGTCAC 59.065 50.000 0.00 0.00 0.00 3.67
2433 5366 1.214367 GAAAGTTGGAGCGAACGTCA 58.786 50.000 0.00 0.00 0.00 4.35
2434 5367 1.192534 CTGAAAGTTGGAGCGAACGTC 59.807 52.381 0.00 0.00 0.00 4.34
2435 5368 1.202486 TCTGAAAGTTGGAGCGAACGT 60.202 47.619 0.00 0.00 33.76 3.99
2436 5369 1.497991 TCTGAAAGTTGGAGCGAACG 58.502 50.000 0.00 0.00 33.76 3.95
2437 5370 5.803020 ATTATCTGAAAGTTGGAGCGAAC 57.197 39.130 0.00 0.00 33.76 3.95
2438 5371 6.206634 ACAAATTATCTGAAAGTTGGAGCGAA 59.793 34.615 13.22 0.00 38.42 4.70
2439 5372 5.705441 ACAAATTATCTGAAAGTTGGAGCGA 59.295 36.000 13.22 0.00 38.42 4.93
2440 5373 5.942872 ACAAATTATCTGAAAGTTGGAGCG 58.057 37.500 13.22 0.00 38.42 5.03
2441 5374 7.750903 GTGTACAAATTATCTGAAAGTTGGAGC 59.249 37.037 0.00 0.00 38.42 4.70
2442 5375 9.003658 AGTGTACAAATTATCTGAAAGTTGGAG 57.996 33.333 0.00 0.00 38.42 3.86
2443 5376 8.918202 AGTGTACAAATTATCTGAAAGTTGGA 57.082 30.769 0.00 5.98 38.42 3.53
2444 5377 9.965824 AAAGTGTACAAATTATCTGAAAGTTGG 57.034 29.630 0.00 0.00 38.42 3.77
2456 5389 9.314321 GCTGAGAGCTATAAAGTGTACAAATTA 57.686 33.333 0.00 0.28 38.45 1.40
2457 5390 7.824289 TGCTGAGAGCTATAAAGTGTACAAATT 59.176 33.333 0.00 0.00 42.97 1.82
2458 5391 7.331026 TGCTGAGAGCTATAAAGTGTACAAAT 58.669 34.615 0.00 0.00 42.97 2.32
2459 5392 6.697395 TGCTGAGAGCTATAAAGTGTACAAA 58.303 36.000 0.00 0.00 42.97 2.83
2460 5393 6.280855 TGCTGAGAGCTATAAAGTGTACAA 57.719 37.500 0.00 0.00 42.97 2.41
2461 5394 5.914898 TGCTGAGAGCTATAAAGTGTACA 57.085 39.130 0.00 0.00 42.97 2.90
2462 5395 7.596749 TTTTGCTGAGAGCTATAAAGTGTAC 57.403 36.000 0.00 0.00 42.97 2.90
2484 5417 6.070824 ACTGTTCTGACCCAATTTGTCTTTTT 60.071 34.615 6.47 0.00 33.83 1.94
2485 5418 5.422012 ACTGTTCTGACCCAATTTGTCTTTT 59.578 36.000 6.47 0.00 33.83 2.27
2486 5419 4.956075 ACTGTTCTGACCCAATTTGTCTTT 59.044 37.500 6.47 0.00 33.83 2.52
2487 5420 4.536765 ACTGTTCTGACCCAATTTGTCTT 58.463 39.130 6.47 0.00 33.83 3.01
2488 5421 4.170468 ACTGTTCTGACCCAATTTGTCT 57.830 40.909 6.47 0.00 33.83 3.41
2489 5422 4.819630 TGTACTGTTCTGACCCAATTTGTC 59.180 41.667 0.00 0.00 0.00 3.18
2490 5423 4.787551 TGTACTGTTCTGACCCAATTTGT 58.212 39.130 0.00 0.00 0.00 2.83
2491 5424 5.530915 TCTTGTACTGTTCTGACCCAATTTG 59.469 40.000 0.00 0.00 0.00 2.32
2492 5425 5.690865 TCTTGTACTGTTCTGACCCAATTT 58.309 37.500 0.00 0.00 0.00 1.82
2493 5426 5.304686 TCTTGTACTGTTCTGACCCAATT 57.695 39.130 0.00 0.00 0.00 2.32
2494 5427 4.974645 TCTTGTACTGTTCTGACCCAAT 57.025 40.909 0.00 0.00 0.00 3.16
2495 5428 4.080807 TGTTCTTGTACTGTTCTGACCCAA 60.081 41.667 0.00 0.00 0.00 4.12
2496 5429 3.452990 TGTTCTTGTACTGTTCTGACCCA 59.547 43.478 0.00 0.00 0.00 4.51
2497 5430 4.067972 TGTTCTTGTACTGTTCTGACCC 57.932 45.455 0.00 0.00 0.00 4.46
2498 5431 7.724305 TTAATGTTCTTGTACTGTTCTGACC 57.276 36.000 0.00 0.00 0.00 4.02
2499 5432 8.827677 AGTTTAATGTTCTTGTACTGTTCTGAC 58.172 33.333 0.00 0.00 0.00 3.51
2500 5433 8.958119 AGTTTAATGTTCTTGTACTGTTCTGA 57.042 30.769 0.00 0.00 0.00 3.27
2526 5459 6.223351 AGACAAATTCGGGGTTTGTAAAAA 57.777 33.333 11.70 0.00 46.51 1.94
2527 5460 5.855740 AGACAAATTCGGGGTTTGTAAAA 57.144 34.783 11.70 0.00 46.51 1.52
2528 5461 5.855740 AAGACAAATTCGGGGTTTGTAAA 57.144 34.783 11.70 0.00 46.51 2.01
2529 5462 5.855740 AAAGACAAATTCGGGGTTTGTAA 57.144 34.783 11.70 0.00 46.51 2.41
2530 5463 5.855740 AAAAGACAAATTCGGGGTTTGTA 57.144 34.783 11.70 0.00 46.51 2.41
2550 5483 2.299013 TCTGAGTAGCTCTCGGCAAAAA 59.701 45.455 13.94 0.00 46.16 1.94
2551 5484 1.893137 TCTGAGTAGCTCTCGGCAAAA 59.107 47.619 13.94 0.00 46.16 2.44
2552 5485 1.202582 GTCTGAGTAGCTCTCGGCAAA 59.797 52.381 13.94 0.00 46.16 3.68
2553 5486 0.811915 GTCTGAGTAGCTCTCGGCAA 59.188 55.000 13.94 0.44 46.16 4.52
2554 5487 1.369839 CGTCTGAGTAGCTCTCGGCA 61.370 60.000 13.94 4.60 46.16 5.69
2555 5488 1.353804 CGTCTGAGTAGCTCTCGGC 59.646 63.158 13.94 9.84 46.16 5.54
2557 5490 1.647346 AGACGTCTGAGTAGCTCTCG 58.353 55.000 19.30 3.46 45.46 4.04
2558 5491 5.294799 TCATTTAGACGTCTGAGTAGCTCTC 59.705 44.000 28.12 0.00 43.03 3.20
2559 5492 5.186942 TCATTTAGACGTCTGAGTAGCTCT 58.813 41.667 28.12 0.00 0.00 4.09
2560 5493 5.487153 TCATTTAGACGTCTGAGTAGCTC 57.513 43.478 28.12 0.00 0.00 4.09
2561 5494 5.825679 AGATCATTTAGACGTCTGAGTAGCT 59.174 40.000 28.12 13.84 0.00 3.32
2562 5495 5.912396 CAGATCATTTAGACGTCTGAGTAGC 59.088 44.000 28.12 11.87 36.07 3.58
2563 5496 7.252965 TCAGATCATTTAGACGTCTGAGTAG 57.747 40.000 28.12 13.41 37.43 2.57
2564 5497 7.625828 TTCAGATCATTTAGACGTCTGAGTA 57.374 36.000 28.12 6.24 41.17 2.59
2565 5498 6.516739 TTCAGATCATTTAGACGTCTGAGT 57.483 37.500 28.12 14.11 41.17 3.41
2566 5499 7.818493 TTTTCAGATCATTTAGACGTCTGAG 57.182 36.000 28.12 14.09 41.17 3.35
2567 5500 7.220875 CGATTTTCAGATCATTTAGACGTCTGA 59.779 37.037 28.12 17.78 39.46 3.27
2568 5501 7.333269 CGATTTTCAGATCATTTAGACGTCTG 58.667 38.462 28.12 12.21 35.57 3.51
2569 5502 6.477033 CCGATTTTCAGATCATTTAGACGTCT 59.523 38.462 23.66 23.66 0.00 4.18
2570 5503 6.475727 TCCGATTTTCAGATCATTTAGACGTC 59.524 38.462 7.70 7.70 0.00 4.34
2571 5504 6.338146 TCCGATTTTCAGATCATTTAGACGT 58.662 36.000 0.00 0.00 0.00 4.34
2572 5505 6.563010 GCTCCGATTTTCAGATCATTTAGACG 60.563 42.308 0.00 0.00 0.00 4.18
2573 5506 6.563010 CGCTCCGATTTTCAGATCATTTAGAC 60.563 42.308 0.00 0.00 0.00 2.59
2574 5507 5.463392 CGCTCCGATTTTCAGATCATTTAGA 59.537 40.000 0.00 0.00 0.00 2.10
2575 5508 5.333645 CCGCTCCGATTTTCAGATCATTTAG 60.334 44.000 0.00 0.00 0.00 1.85
2576 5509 4.511454 CCGCTCCGATTTTCAGATCATTTA 59.489 41.667 0.00 0.00 0.00 1.40
2577 5510 3.313526 CCGCTCCGATTTTCAGATCATTT 59.686 43.478 0.00 0.00 0.00 2.32
2578 5511 2.874701 CCGCTCCGATTTTCAGATCATT 59.125 45.455 0.00 0.00 0.00 2.57
2579 5512 2.103094 TCCGCTCCGATTTTCAGATCAT 59.897 45.455 0.00 0.00 0.00 2.45
2580 5513 1.480545 TCCGCTCCGATTTTCAGATCA 59.519 47.619 0.00 0.00 0.00 2.92
2581 5514 1.861575 GTCCGCTCCGATTTTCAGATC 59.138 52.381 0.00 0.00 0.00 2.75
2582 5515 1.207089 TGTCCGCTCCGATTTTCAGAT 59.793 47.619 0.00 0.00 0.00 2.90
2583 5516 0.606096 TGTCCGCTCCGATTTTCAGA 59.394 50.000 0.00 0.00 0.00 3.27
2584 5517 0.721718 GTGTCCGCTCCGATTTTCAG 59.278 55.000 0.00 0.00 0.00 3.02
2585 5518 0.672401 GGTGTCCGCTCCGATTTTCA 60.672 55.000 0.00 0.00 0.00 2.69
2586 5519 0.672401 TGGTGTCCGCTCCGATTTTC 60.672 55.000 0.00 0.00 0.00 2.29
2587 5520 0.250553 TTGGTGTCCGCTCCGATTTT 60.251 50.000 0.00 0.00 0.00 1.82
2588 5521 0.250553 TTTGGTGTCCGCTCCGATTT 60.251 50.000 0.00 0.00 0.00 2.17
2589 5522 0.250553 TTTTGGTGTCCGCTCCGATT 60.251 50.000 0.00 0.00 0.00 3.34
2590 5523 0.035439 ATTTTGGTGTCCGCTCCGAT 60.035 50.000 0.00 0.00 0.00 4.18
2591 5524 0.609151 TATTTTGGTGTCCGCTCCGA 59.391 50.000 0.00 0.00 0.00 4.55
2592 5525 1.597663 GATATTTTGGTGTCCGCTCCG 59.402 52.381 0.00 0.00 0.00 4.63
2593 5526 2.919228 AGATATTTTGGTGTCCGCTCC 58.081 47.619 0.00 0.00 0.00 4.70
2594 5527 3.808174 GGTAGATATTTTGGTGTCCGCTC 59.192 47.826 0.00 0.00 0.00 5.03
2595 5528 3.199071 TGGTAGATATTTTGGTGTCCGCT 59.801 43.478 0.00 0.00 0.00 5.52
2596 5529 3.537580 TGGTAGATATTTTGGTGTCCGC 58.462 45.455 0.00 0.00 0.00 5.54
2597 5530 5.364778 TCATGGTAGATATTTTGGTGTCCG 58.635 41.667 0.00 0.00 0.00 4.79
2598 5531 7.639113 TTTCATGGTAGATATTTTGGTGTCC 57.361 36.000 0.00 0.00 0.00 4.02
2599 5532 9.573133 CTTTTTCATGGTAGATATTTTGGTGTC 57.427 33.333 0.00 0.00 0.00 3.67
2600 5533 9.308000 TCTTTTTCATGGTAGATATTTTGGTGT 57.692 29.630 0.00 0.00 0.00 4.16
2672 5605 5.468409 TCATCTACATCTGCGTTGACAAAAA 59.532 36.000 0.00 0.00 0.00 1.94
2673 5606 4.994217 TCATCTACATCTGCGTTGACAAAA 59.006 37.500 0.00 0.00 0.00 2.44
2674 5607 4.565022 TCATCTACATCTGCGTTGACAAA 58.435 39.130 0.00 0.00 0.00 2.83
2675 5608 4.176271 CTCATCTACATCTGCGTTGACAA 58.824 43.478 0.00 0.00 0.00 3.18
2676 5609 3.774066 CTCATCTACATCTGCGTTGACA 58.226 45.455 0.00 0.00 0.00 3.58
2677 5610 2.537625 GCTCATCTACATCTGCGTTGAC 59.462 50.000 0.00 0.00 0.00 3.18
2678 5611 2.481969 GGCTCATCTACATCTGCGTTGA 60.482 50.000 0.00 0.00 0.00 3.18
2679 5612 1.863454 GGCTCATCTACATCTGCGTTG 59.137 52.381 0.00 0.00 0.00 4.10
2680 5613 1.759445 AGGCTCATCTACATCTGCGTT 59.241 47.619 0.00 0.00 0.00 4.84
2681 5614 1.068281 CAGGCTCATCTACATCTGCGT 59.932 52.381 0.00 0.00 0.00 5.24
2682 5615 1.604947 CCAGGCTCATCTACATCTGCG 60.605 57.143 0.00 0.00 0.00 5.18
2683 5616 1.270732 CCCAGGCTCATCTACATCTGC 60.271 57.143 0.00 0.00 0.00 4.26
2684 5617 2.045524 ACCCAGGCTCATCTACATCTG 58.954 52.381 0.00 0.00 0.00 2.90
2685 5618 2.485966 ACCCAGGCTCATCTACATCT 57.514 50.000 0.00 0.00 0.00 2.90
2686 5619 4.345257 TCTTAACCCAGGCTCATCTACATC 59.655 45.833 0.00 0.00 0.00 3.06
2687 5620 4.298626 TCTTAACCCAGGCTCATCTACAT 58.701 43.478 0.00 0.00 0.00 2.29
2688 5621 3.719871 TCTTAACCCAGGCTCATCTACA 58.280 45.455 0.00 0.00 0.00 2.74
2689 5622 4.755266 TTCTTAACCCAGGCTCATCTAC 57.245 45.455 0.00 0.00 0.00 2.59
2690 5623 5.397899 CCATTTCTTAACCCAGGCTCATCTA 60.398 44.000 0.00 0.00 0.00 1.98
2691 5624 4.530875 CATTTCTTAACCCAGGCTCATCT 58.469 43.478 0.00 0.00 0.00 2.90
2692 5625 3.633986 CCATTTCTTAACCCAGGCTCATC 59.366 47.826 0.00 0.00 0.00 2.92
2693 5626 3.269381 TCCATTTCTTAACCCAGGCTCAT 59.731 43.478 0.00 0.00 0.00 2.90
2694 5627 2.647299 TCCATTTCTTAACCCAGGCTCA 59.353 45.455 0.00 0.00 0.00 4.26
2695 5628 3.366052 TCCATTTCTTAACCCAGGCTC 57.634 47.619 0.00 0.00 0.00 4.70
2696 5629 5.669798 ATATCCATTTCTTAACCCAGGCT 57.330 39.130 0.00 0.00 0.00 4.58
2697 5630 6.462909 CCAAATATCCATTTCTTAACCCAGGC 60.463 42.308 0.00 0.00 31.82 4.85
2698 5631 6.041979 CCCAAATATCCATTTCTTAACCCAGG 59.958 42.308 0.00 0.00 31.82 4.45
2699 5632 6.838612 TCCCAAATATCCATTTCTTAACCCAG 59.161 38.462 0.00 0.00 31.82 4.45
2700 5633 6.746894 TCCCAAATATCCATTTCTTAACCCA 58.253 36.000 0.00 0.00 31.82 4.51
2701 5634 6.267699 CCTCCCAAATATCCATTTCTTAACCC 59.732 42.308 0.00 0.00 31.82 4.11
2702 5635 6.839134 ACCTCCCAAATATCCATTTCTTAACC 59.161 38.462 0.00 0.00 31.82 2.85
2703 5636 7.898014 ACCTCCCAAATATCCATTTCTTAAC 57.102 36.000 0.00 0.00 31.82 2.01
2704 5637 8.757877 CAAACCTCCCAAATATCCATTTCTTAA 58.242 33.333 0.00 0.00 31.82 1.85
2705 5638 7.344352 CCAAACCTCCCAAATATCCATTTCTTA 59.656 37.037 0.00 0.00 31.82 2.10
2706 5639 6.156775 CCAAACCTCCCAAATATCCATTTCTT 59.843 38.462 0.00 0.00 31.82 2.52
2707 5640 5.662657 CCAAACCTCCCAAATATCCATTTCT 59.337 40.000 0.00 0.00 31.82 2.52
2708 5641 5.163311 CCCAAACCTCCCAAATATCCATTTC 60.163 44.000 0.00 0.00 31.82 2.17
2709 5642 4.721274 CCCAAACCTCCCAAATATCCATTT 59.279 41.667 0.00 0.00 34.60 2.32
2710 5643 4.265261 ACCCAAACCTCCCAAATATCCATT 60.265 41.667 0.00 0.00 0.00 3.16
2711 5644 3.274690 ACCCAAACCTCCCAAATATCCAT 59.725 43.478 0.00 0.00 0.00 3.41
2712 5645 2.657459 ACCCAAACCTCCCAAATATCCA 59.343 45.455 0.00 0.00 0.00 3.41
2713 5646 3.398318 ACCCAAACCTCCCAAATATCC 57.602 47.619 0.00 0.00 0.00 2.59
2714 5647 6.373759 AGAATACCCAAACCTCCCAAATATC 58.626 40.000 0.00 0.00 0.00 1.63
2715 5648 6.162241 AGAGAATACCCAAACCTCCCAAATAT 59.838 38.462 0.00 0.00 0.00 1.28
2716 5649 5.494706 AGAGAATACCCAAACCTCCCAAATA 59.505 40.000 0.00 0.00 0.00 1.40
2717 5650 4.294970 AGAGAATACCCAAACCTCCCAAAT 59.705 41.667 0.00 0.00 0.00 2.32
2718 5651 3.660669 AGAGAATACCCAAACCTCCCAAA 59.339 43.478 0.00 0.00 0.00 3.28
2719 5652 3.265489 AGAGAATACCCAAACCTCCCAA 58.735 45.455 0.00 0.00 0.00 4.12
2720 5653 2.929301 AGAGAATACCCAAACCTCCCA 58.071 47.619 0.00 0.00 0.00 4.37
2721 5654 4.908481 AGATAGAGAATACCCAAACCTCCC 59.092 45.833 0.00 0.00 0.00 4.30
2722 5655 5.279056 CGAGATAGAGAATACCCAAACCTCC 60.279 48.000 0.00 0.00 0.00 4.30
2723 5656 5.279056 CCGAGATAGAGAATACCCAAACCTC 60.279 48.000 0.00 0.00 0.00 3.85
2724 5657 4.589374 CCGAGATAGAGAATACCCAAACCT 59.411 45.833 0.00 0.00 0.00 3.50
2725 5658 4.262506 CCCGAGATAGAGAATACCCAAACC 60.263 50.000 0.00 0.00 0.00 3.27
2726 5659 4.262506 CCCCGAGATAGAGAATACCCAAAC 60.263 50.000 0.00 0.00 0.00 2.93
2727 5660 3.901844 CCCCGAGATAGAGAATACCCAAA 59.098 47.826 0.00 0.00 0.00 3.28
2728 5661 3.116862 ACCCCGAGATAGAGAATACCCAA 60.117 47.826 0.00 0.00 0.00 4.12
2729 5662 2.449730 ACCCCGAGATAGAGAATACCCA 59.550 50.000 0.00 0.00 0.00 4.51
2730 5663 3.172471 ACCCCGAGATAGAGAATACCC 57.828 52.381 0.00 0.00 0.00 3.69
2731 5664 4.150359 TGAACCCCGAGATAGAGAATACC 58.850 47.826 0.00 0.00 0.00 2.73
2732 5665 5.071370 TCTGAACCCCGAGATAGAGAATAC 58.929 45.833 0.00 0.00 0.00 1.89
2733 5666 5.320488 TCTGAACCCCGAGATAGAGAATA 57.680 43.478 0.00 0.00 0.00 1.75
2734 5667 4.186077 TCTGAACCCCGAGATAGAGAAT 57.814 45.455 0.00 0.00 0.00 2.40
2735 5668 3.664551 TCTGAACCCCGAGATAGAGAA 57.335 47.619 0.00 0.00 0.00 2.87
2745 5678 0.462759 GAGCCTCATTCTGAACCCCG 60.463 60.000 0.00 0.00 0.00 5.73
2769 5702 9.941664 CTATAGAATTCATGTGCAACCTTTAAG 57.058 33.333 8.44 0.00 34.36 1.85
2776 5709 6.037500 TGTCTGCTATAGAATTCATGTGCAAC 59.962 38.462 8.44 12.38 37.12 4.17
2777 5710 6.114767 TGTCTGCTATAGAATTCATGTGCAA 58.885 36.000 8.44 2.43 37.12 4.08
2795 5728 4.082571 GCACCCATGGAATATTATGTCTGC 60.083 45.833 15.22 0.00 0.00 4.26
2798 5731 6.886459 AGTATGCACCCATGGAATATTATGTC 59.114 38.462 15.22 0.00 32.85 3.06
2803 5736 7.031415 TGATAGTATGCACCCATGGAATATT 57.969 36.000 15.22 5.31 32.85 1.28
2811 5744 6.671340 ACTCTATCATGATAGTATGCACCCAT 59.329 38.462 32.15 11.63 41.12 4.00
2821 5754 5.791666 CATGTGGCACTCTATCATGATAGT 58.208 41.667 32.15 20.30 41.12 2.12
2822 5755 4.630505 GCATGTGGCACTCTATCATGATAG 59.369 45.833 29.54 29.54 43.97 2.08
2823 5756 4.572909 GCATGTGGCACTCTATCATGATA 58.427 43.478 19.83 14.64 43.97 2.15
2824 5757 3.409570 GCATGTGGCACTCTATCATGAT 58.590 45.455 19.83 13.81 43.97 2.45
2825 5758 2.842457 GCATGTGGCACTCTATCATGA 58.158 47.619 19.83 0.00 43.97 3.07
2840 5773 1.202927 AGGCCACACAAAGTAGCATGT 60.203 47.619 5.01 0.00 36.51 3.21
2841 5774 1.538047 AGGCCACACAAAGTAGCATG 58.462 50.000 5.01 0.00 36.51 4.06
2842 5775 3.652057 ATAGGCCACACAAAGTAGCAT 57.348 42.857 5.01 0.00 36.51 3.79
2843 5776 3.433306 AATAGGCCACACAAAGTAGCA 57.567 42.857 5.01 0.00 36.51 3.49
2844 5777 4.485163 CAAAATAGGCCACACAAAGTAGC 58.515 43.478 5.01 0.00 33.82 3.58
2845 5778 4.522789 ACCAAAATAGGCCACACAAAGTAG 59.477 41.667 5.01 0.00 0.00 2.57
2846 5779 4.279671 CACCAAAATAGGCCACACAAAGTA 59.720 41.667 5.01 0.00 0.00 2.24
2847 5780 3.069443 CACCAAAATAGGCCACACAAAGT 59.931 43.478 5.01 0.00 0.00 2.66
2848 5781 3.554752 CCACCAAAATAGGCCACACAAAG 60.555 47.826 5.01 0.00 0.00 2.77
2849 5782 2.366916 CCACCAAAATAGGCCACACAAA 59.633 45.455 5.01 0.00 0.00 2.83
2850 5783 1.967066 CCACCAAAATAGGCCACACAA 59.033 47.619 5.01 0.00 0.00 3.33
2851 5784 1.145945 TCCACCAAAATAGGCCACACA 59.854 47.619 5.01 0.00 0.00 3.72
2852 5785 1.917872 TCCACCAAAATAGGCCACAC 58.082 50.000 5.01 0.00 0.00 3.82
2853 5786 2.685106 TTCCACCAAAATAGGCCACA 57.315 45.000 5.01 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.