Multiple sequence alignment - TraesCS4D01G270600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G270600 chr4D 100.000 8792 0 0 1 8792 441481040 441489831 0.000000e+00 16236.0
1 TraesCS4D01G270600 chr4D 95.726 117 5 0 5663 5779 497153659 497153775 1.170000e-43 189.0
2 TraesCS4D01G270600 chr4D 88.430 121 10 4 4289 4407 441484826 441484944 9.200000e-30 143.0
3 TraesCS4D01G270600 chr4D 88.430 121 10 4 3787 3905 441485328 441485446 9.200000e-30 143.0
4 TraesCS4D01G270600 chr4D 100.000 30 0 0 4109 4138 441484902 441484931 1.000000e-03 56.5
5 TraesCS4D01G270600 chr4D 100.000 30 0 0 3863 3892 441485148 441485177 1.000000e-03 56.5
6 TraesCS4D01G270600 chr4D 100.000 30 0 0 4365 4394 441485148 441485177 1.000000e-03 56.5
7 TraesCS4D01G270600 chr4D 100.000 30 0 0 4109 4138 441485404 441485433 1.000000e-03 56.5
8 TraesCS4D01G270600 chr4A 97.016 2916 71 5 241 3143 26091257 26088345 0.000000e+00 4889.0
9 TraesCS4D01G270600 chr4A 90.836 3110 123 49 5773 8792 26080347 26077310 0.000000e+00 4015.0
10 TraesCS4D01G270600 chr4A 93.921 839 33 11 4207 5040 26081754 26080929 0.000000e+00 1251.0
11 TraesCS4D01G270600 chr4A 90.938 629 34 9 3227 3853 26088211 26087604 0.000000e+00 824.0
12 TraesCS4D01G270600 chr4A 95.183 519 21 2 5156 5670 26080863 26080345 0.000000e+00 817.0
13 TraesCS4D01G270600 chr4A 93.667 300 13 3 3850 4149 26082045 26081752 2.250000e-120 444.0
14 TraesCS4D01G270600 chr4A 88.372 129 11 4 3779 3905 26081679 26081553 1.530000e-32 152.0
15 TraesCS4D01G270600 chr4A 91.803 61 4 1 4352 4411 26082045 26081985 5.660000e-12 84.2
16 TraesCS4D01G270600 chr4A 100.000 30 0 0 4109 4138 26081595 26081566 1.000000e-03 56.5
17 TraesCS4D01G270600 chr4A 100.000 30 0 0 4109 4138 26082032 26082003 1.000000e-03 56.5
18 TraesCS4D01G270600 chr4B 95.812 1743 50 8 1489 3227 547550970 547552693 0.000000e+00 2793.0
19 TraesCS4D01G270600 chr4B 93.754 1713 83 15 3528 5234 547553251 547554945 0.000000e+00 2549.0
20 TraesCS4D01G270600 chr4B 95.018 1385 39 8 97 1459 547549265 547550641 0.000000e+00 2148.0
21 TraesCS4D01G270600 chr4B 93.361 1220 31 12 7121 8315 547556570 547557764 0.000000e+00 1759.0
22 TraesCS4D01G270600 chr4B 94.690 1130 48 6 5773 6894 547555330 547556455 0.000000e+00 1744.0
23 TraesCS4D01G270600 chr4B 96.907 388 12 0 5283 5670 547554945 547555332 0.000000e+00 651.0
24 TraesCS4D01G270600 chr4B 97.020 302 9 0 3227 3528 547552804 547553105 7.870000e-140 508.0
25 TraesCS4D01G270600 chr4B 85.965 285 13 7 8421 8705 547557797 547558054 6.720000e-71 279.0
26 TraesCS4D01G270600 chr4B 84.906 159 19 3 6957 7110 520910771 520910929 1.180000e-33 156.0
27 TraesCS4D01G270600 chr4B 89.062 128 11 3 4281 4407 547553502 547553627 1.180000e-33 156.0
28 TraesCS4D01G270600 chr4B 84.906 159 17 4 6957 7109 28307922 28307765 4.250000e-33 154.0
29 TraesCS4D01G270600 chr4B 100.000 30 0 0 4109 4138 547553585 547553614 1.000000e-03 56.5
30 TraesCS4D01G270600 chr4B 100.000 30 0 0 3863 3892 547553830 547553859 1.000000e-03 56.5
31 TraesCS4D01G270600 chr4B 100.000 30 0 0 4365 4394 547553830 547553859 1.000000e-03 56.5
32 TraesCS4D01G270600 chr7B 99.107 112 1 0 5668 5779 420072689 420072800 1.500000e-47 202.0
33 TraesCS4D01G270600 chr7B 86.228 167 21 2 97 262 668210420 668210585 7.010000e-41 180.0
34 TraesCS4D01G270600 chr7B 84.768 151 20 2 6960 7110 11739392 11739245 1.980000e-31 148.0
35 TraesCS4D01G270600 chr7B 96.386 83 3 0 1 83 16154342 16154260 4.280000e-28 137.0
36 TraesCS4D01G270600 chr1B 98.230 113 2 0 5667 5779 88542196 88542084 1.940000e-46 198.0
37 TraesCS4D01G270600 chr1B 98.214 112 2 0 5667 5778 37832786 37832675 6.960000e-46 196.0
38 TraesCS4D01G270600 chr1B 96.341 82 3 0 1 82 10565706 10565787 1.540000e-27 135.0
39 TraesCS4D01G270600 chr1B 97.468 79 2 0 1 79 117211497 117211575 1.540000e-27 135.0
40 TraesCS4D01G270600 chr6B 98.198 111 2 0 5665 5775 470116335 470116225 2.500000e-45 195.0
41 TraesCS4D01G270600 chr6B 86.093 151 18 3 6960 7109 585810853 585811001 9.140000e-35 159.0
42 TraesCS4D01G270600 chr6B 90.588 85 8 0 3970 4054 502316238 502316322 7.210000e-21 113.0
43 TraesCS4D01G270600 chr2B 97.345 113 3 0 5664 5776 770902336 770902448 9.010000e-45 193.0
44 TraesCS4D01G270600 chr2B 85.714 105 12 3 3951 4054 550399931 550400033 3.360000e-19 108.0
45 TraesCS4D01G270600 chr5D 96.522 115 4 0 5669 5783 399621843 399621957 3.240000e-44 191.0
46 TraesCS4D01G270600 chr5D 86.093 151 21 0 6960 7110 458870280 458870130 7.060000e-36 163.0
47 TraesCS4D01G270600 chr5D 86.301 146 19 1 6965 7110 458874221 458874077 3.290000e-34 158.0
48 TraesCS4D01G270600 chr5D 90.476 84 8 0 3972 4055 256749796 256749879 2.590000e-20 111.0
49 TraesCS4D01G270600 chr5D 81.600 125 15 5 3975 4091 365735531 365735407 7.270000e-16 97.1
50 TraesCS4D01G270600 chr2D 97.321 112 2 1 5669 5780 207289019 207289129 1.170000e-43 189.0
51 TraesCS4D01G270600 chr2D 95.726 117 5 0 5659 5775 525935407 525935523 1.170000e-43 189.0
52 TraesCS4D01G270600 chr3A 86.047 172 23 1 97 267 681520718 681520547 5.420000e-42 183.0
53 TraesCS4D01G270600 chr2A 87.662 154 16 1 6957 7110 418618249 418618399 9.070000e-40 176.0
54 TraesCS4D01G270600 chr2A 89.412 85 9 0 3970 4054 446072050 446072134 3.360000e-19 108.0
55 TraesCS4D01G270600 chr3B 85.629 167 23 1 97 262 448590979 448591145 3.260000e-39 174.0
56 TraesCS4D01G270600 chr5A 86.755 151 20 0 6960 7110 577931144 577930994 1.520000e-37 169.0
57 TraesCS4D01G270600 chr7D 84.868 152 17 4 6960 7109 570658097 570657950 1.980000e-31 148.0
58 TraesCS4D01G270600 chr7D 88.991 109 12 0 149 257 89556176 89556068 1.540000e-27 135.0
59 TraesCS4D01G270600 chr7D 96.386 83 2 1 1 82 566542360 566542278 1.540000e-27 135.0
60 TraesCS4D01G270600 chr7D 96.341 82 2 1 1 82 607121982 607121902 5.540000e-27 134.0
61 TraesCS4D01G270600 chr7D 95.122 82 3 1 1 81 419814586 419814667 2.580000e-25 128.0
62 TraesCS4D01G270600 chr7D 83.036 112 19 0 143 254 39139936 39140047 1.560000e-17 102.0
63 TraesCS4D01G270600 chr5B 96.386 83 2 1 1 82 381770704 381770786 1.540000e-27 135.0
64 TraesCS4D01G270600 chr5B 97.468 79 2 0 1 79 455336018 455335940 1.540000e-27 135.0
65 TraesCS4D01G270600 chr1D 97.468 79 2 0 1 79 457143068 457143146 1.540000e-27 135.0
66 TraesCS4D01G270600 chr1D 89.655 87 7 2 3969 4054 111003367 111003452 9.330000e-20 110.0
67 TraesCS4D01G270600 chr6D 91.765 85 7 0 3970 4054 320698236 320698152 1.550000e-22 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G270600 chr4D 441481040 441489831 8791 False 16236.000000 16236 100.000000 1 8792 1 chr4D.!!$F1 8791
1 TraesCS4D01G270600 chr4A 26087604 26091257 3653 True 2856.500000 4889 93.977000 241 3853 2 chr4A.!!$R2 3612
2 TraesCS4D01G270600 chr4A 26077310 26082045 4735 True 859.525000 4015 94.222750 3779 8792 8 chr4A.!!$R1 5013
3 TraesCS4D01G270600 chr4B 547549265 547558054 8789 False 1063.041667 2793 95.132417 97 8705 12 chr4B.!!$F2 8608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 235 0.379669 TAGCGGTACTGTAGCTTCGC 59.620 55.000 14.34 13.70 41.88 4.70 F
1708 2031 0.034896 ACCACTGTTAAGGACGCTGG 59.965 55.000 0.00 0.00 0.00 4.85 F
2273 2599 0.743701 CAGCAGAGATGGCACCTCAC 60.744 60.000 12.35 2.43 33.25 3.51 F
3637 4230 0.608640 GGACGGACTTGGACATGACT 59.391 55.000 0.00 0.00 0.00 3.41 F
4275 4870 1.514443 GACTACTGCTCGTGGTCGC 60.514 63.158 7.27 0.00 42.95 5.19 F
5679 6283 0.040646 TCCATGTGTACTCCCTCCGT 59.959 55.000 0.00 0.00 0.00 4.69 F
5685 6289 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30 F
7217 7873 0.328258 AAGTCTAGGCCGCCATTTGT 59.672 50.000 13.15 0.00 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2089 2415 0.040204 AGTAGCAGGGCCAGCAAATT 59.960 50.000 23.65 4.58 0.00 1.82 R
2942 3278 1.349026 ACTGTAGCTTCATGTGGCAGT 59.651 47.619 13.18 8.21 0.00 4.40 R
4207 4801 1.759445 CACCCAAAAACATGACCACCA 59.241 47.619 0.00 0.00 0.00 4.17 R
5494 6098 0.328258 GGGCCATACCACTGTCTTGT 59.672 55.000 4.39 0.00 42.05 3.16 R
5752 6356 0.032813 TCCCTCCGTCCCGAATTACT 60.033 55.000 0.00 0.00 0.00 2.24 R
7317 7973 0.246635 GGAAAGCAGCGAGTGACCTA 59.753 55.000 0.00 0.00 0.00 3.08 R
7341 7997 0.780002 GCGGCATTATACGTGTACGG 59.220 55.000 9.40 0.00 44.95 4.02 R
8450 9164 0.331616 AAAAATAGGTCGCCTGCCCT 59.668 50.000 8.44 0.00 34.61 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.553323 GAGTGGTAGACGTTGTTGTATGT 58.447 43.478 0.00 0.00 0.00 2.29
23 24 4.553323 AGTGGTAGACGTTGTTGTATGTC 58.447 43.478 0.00 0.00 34.87 3.06
24 25 4.280174 AGTGGTAGACGTTGTTGTATGTCT 59.720 41.667 0.00 0.00 44.43 3.41
25 26 4.986659 GTGGTAGACGTTGTTGTATGTCTT 59.013 41.667 4.06 0.00 40.59 3.01
26 27 6.016024 AGTGGTAGACGTTGTTGTATGTCTTA 60.016 38.462 4.06 0.00 40.59 2.10
27 28 6.810182 GTGGTAGACGTTGTTGTATGTCTTAT 59.190 38.462 4.06 0.00 40.59 1.73
28 29 7.330208 GTGGTAGACGTTGTTGTATGTCTTATT 59.670 37.037 4.06 0.00 40.59 1.40
29 30 7.874016 TGGTAGACGTTGTTGTATGTCTTATTT 59.126 33.333 4.06 0.00 40.59 1.40
30 31 8.378421 GGTAGACGTTGTTGTATGTCTTATTTC 58.622 37.037 4.06 0.00 40.59 2.17
31 32 9.136952 GTAGACGTTGTTGTATGTCTTATTTCT 57.863 33.333 4.06 0.00 40.59 2.52
32 33 8.240883 AGACGTTGTTGTATGTCTTATTTCTC 57.759 34.615 0.00 0.00 40.59 2.87
33 34 8.088981 AGACGTTGTTGTATGTCTTATTTCTCT 58.911 33.333 0.00 0.00 40.59 3.10
34 35 8.240883 ACGTTGTTGTATGTCTTATTTCTCTC 57.759 34.615 0.00 0.00 0.00 3.20
35 36 8.088981 ACGTTGTTGTATGTCTTATTTCTCTCT 58.911 33.333 0.00 0.00 0.00 3.10
36 37 8.926710 CGTTGTTGTATGTCTTATTTCTCTCTT 58.073 33.333 0.00 0.00 0.00 2.85
55 56 8.838365 TCTCTCTTTCTATAAAGCTAAGGTACG 58.162 37.037 0.00 0.00 41.64 3.67
56 57 7.424001 TCTCTTTCTATAAAGCTAAGGTACGC 58.576 38.462 0.00 0.00 41.64 4.42
57 58 7.067859 TCTCTTTCTATAAAGCTAAGGTACGCA 59.932 37.037 0.00 0.00 41.64 5.24
58 59 7.549839 TCTTTCTATAAAGCTAAGGTACGCAA 58.450 34.615 0.00 0.00 41.64 4.85
59 60 8.202137 TCTTTCTATAAAGCTAAGGTACGCAAT 58.798 33.333 0.00 0.00 41.64 3.56
60 61 8.726870 TTTCTATAAAGCTAAGGTACGCAATT 57.273 30.769 0.00 0.00 0.00 2.32
61 62 8.726870 TTCTATAAAGCTAAGGTACGCAATTT 57.273 30.769 0.00 0.00 0.00 1.82
62 63 8.138365 TCTATAAAGCTAAGGTACGCAATTTG 57.862 34.615 0.00 0.00 0.00 2.32
63 64 3.487563 AAGCTAAGGTACGCAATTTGC 57.512 42.857 11.42 11.42 40.69 3.68
73 74 2.462503 GCAATTTGCGTACCCTCGA 58.537 52.632 5.49 0.00 31.71 4.04
74 75 0.800012 GCAATTTGCGTACCCTCGAA 59.200 50.000 5.49 0.00 31.71 3.71
75 76 1.198178 GCAATTTGCGTACCCTCGAAA 59.802 47.619 5.49 0.00 31.71 3.46
76 77 2.350964 GCAATTTGCGTACCCTCGAAAA 60.351 45.455 5.49 0.00 41.60 2.29
77 78 3.854045 GCAATTTGCGTACCCTCGAAAAA 60.854 43.478 5.49 0.00 40.89 1.94
100 101 8.744568 AAAAGAATCATAGTCTGAGATTTCCC 57.255 34.615 0.00 0.00 37.28 3.97
101 102 7.443302 AAGAATCATAGTCTGAGATTTCCCA 57.557 36.000 0.00 0.00 37.28 4.37
102 103 7.443302 AGAATCATAGTCTGAGATTTCCCAA 57.557 36.000 0.00 0.00 37.28 4.12
103 104 7.865820 AGAATCATAGTCTGAGATTTCCCAAA 58.134 34.615 0.00 0.00 37.28 3.28
104 105 7.772757 AGAATCATAGTCTGAGATTTCCCAAAC 59.227 37.037 0.00 0.00 37.28 2.93
113 114 5.139727 TGAGATTTCCCAAACACTGTTCAT 58.860 37.500 0.00 0.00 0.00 2.57
116 117 5.711976 AGATTTCCCAAACACTGTTCATAGG 59.288 40.000 0.00 0.00 0.00 2.57
147 148 3.648339 AAGCACATCAATGTTGACCAC 57.352 42.857 0.00 0.00 40.49 4.16
153 154 4.514816 CACATCAATGTTGACCACACTGTA 59.485 41.667 0.00 0.00 40.49 2.74
161 162 0.530744 GACCACACTGTAGCATCCGA 59.469 55.000 0.00 0.00 0.00 4.55
165 166 2.623416 CCACACTGTAGCATCCGATCTA 59.377 50.000 0.00 0.00 0.00 1.98
179 180 1.129811 CGATCTAAACCGCCGCTTTTT 59.870 47.619 0.00 0.00 0.00 1.94
188 189 1.255767 CGCCGCTTTTTAATCCAACG 58.744 50.000 0.00 0.00 0.00 4.10
197 198 2.660189 TTAATCCAACGGACGAGACC 57.340 50.000 0.00 0.00 32.98 3.85
198 199 1.548081 TAATCCAACGGACGAGACCA 58.452 50.000 0.00 0.00 32.98 4.02
206 215 1.376037 GGACGAGACCAGGCAAAGG 60.376 63.158 0.00 0.00 0.00 3.11
223 232 2.140839 AGGTAGCGGTACTGTAGCTT 57.859 50.000 22.84 5.94 41.88 3.74
225 234 1.268437 GGTAGCGGTACTGTAGCTTCG 60.268 57.143 22.84 5.67 41.88 3.79
226 235 0.379669 TAGCGGTACTGTAGCTTCGC 59.620 55.000 14.34 13.70 41.88 4.70
227 236 1.139095 GCGGTACTGTAGCTTCGCT 59.861 57.895 14.34 0.00 43.41 4.93
228 237 0.379669 GCGGTACTGTAGCTTCGCTA 59.620 55.000 14.34 0.00 40.44 4.26
229 238 1.202222 GCGGTACTGTAGCTTCGCTAA 60.202 52.381 14.34 0.00 43.07 3.09
236 245 2.073816 TGTAGCTTCGCTAACTTTGCC 58.926 47.619 0.00 0.00 43.07 4.52
239 248 0.875059 GCTTCGCTAACTTTGCCACT 59.125 50.000 0.00 0.00 0.00 4.00
966 989 4.402528 CATCGCCCCGTGGAACCA 62.403 66.667 0.00 0.00 0.00 3.67
1159 1182 4.504596 GCCCCATCATGGACGCCA 62.505 66.667 4.75 1.01 40.96 5.69
1474 1497 1.177256 AGGACGCACTGGTACGTTCT 61.177 55.000 0.00 1.82 43.19 3.01
1476 1499 1.058404 GACGCACTGGTACGTTCTTC 58.942 55.000 0.00 0.00 43.71 2.87
1477 1500 0.319297 ACGCACTGGTACGTTCTTCC 60.319 55.000 0.00 0.00 40.09 3.46
1478 1501 1.012486 CGCACTGGTACGTTCTTCCC 61.012 60.000 0.00 0.00 0.00 3.97
1516 1838 6.482308 AGCTGTTAGTTTATTTCAGTGTTCGT 59.518 34.615 0.00 0.00 0.00 3.85
1615 1938 3.550842 GGTCTGACCAGATTGTGTTTTGC 60.551 47.826 21.70 0.00 39.97 3.68
1706 2029 1.067071 GCTACCACTGTTAAGGACGCT 60.067 52.381 0.00 0.00 0.00 5.07
1708 2031 0.034896 ACCACTGTTAAGGACGCTGG 59.965 55.000 0.00 0.00 0.00 4.85
2031 2357 1.868997 CATCGTGTTCACCAGCCAC 59.131 57.895 0.00 0.00 0.00 5.01
2273 2599 0.743701 CAGCAGAGATGGCACCTCAC 60.744 60.000 12.35 2.43 33.25 3.51
2420 2746 8.558700 GTGCAGATAGACTACTACTTTAGGTAC 58.441 40.741 0.00 0.00 0.00 3.34
2431 2757 6.951971 ACTACTTTAGGTACTTCTCCGTCTA 58.048 40.000 0.00 0.00 41.75 2.59
2463 2790 1.103398 ACACTTTGCCACCACTGAGC 61.103 55.000 0.00 0.00 0.00 4.26
2467 2794 0.819259 TTTGCCACCACTGAGCTCAC 60.819 55.000 13.74 1.34 0.00 3.51
2548 2883 7.321600 TTCTTGAGGAGACATATGGATGACCA 61.322 42.308 7.80 0.00 41.65 4.02
2609 2944 5.010617 CCAGGTTAGTTTGCTGGTTTTACAT 59.989 40.000 0.00 0.00 0.00 2.29
2620 2955 5.221342 TGCTGGTTTTACATGGTGGTTTTAG 60.221 40.000 0.00 0.00 0.00 1.85
2726 3061 5.661056 TCTGGTCACCTTCTATAGTTGTG 57.339 43.478 0.00 6.24 0.00 3.33
2764 3099 2.439507 GGGAGATGGAGAGTTGGCATTA 59.560 50.000 0.00 0.00 0.00 1.90
2855 3191 7.068839 TGTTTAGTAATGGTGTGGTTGATTTGT 59.931 33.333 0.00 0.00 0.00 2.83
2942 3278 9.679661 TTACATCATGCCTAGAAAATTTAGACA 57.320 29.630 0.00 0.00 0.00 3.41
2975 3311 3.347216 AGCTACAGTTGCATCGGAATTT 58.653 40.909 9.75 0.00 0.00 1.82
2978 3314 2.513753 ACAGTTGCATCGGAATTTGGA 58.486 42.857 1.75 0.00 0.00 3.53
3156 3492 9.692325 AAAATGAAAGCTGAGAACTTATATCCT 57.308 29.630 0.00 0.00 0.00 3.24
3157 3493 8.674263 AATGAAAGCTGAGAACTTATATCCTG 57.326 34.615 0.00 0.00 0.00 3.86
3158 3494 7.187824 TGAAAGCTGAGAACTTATATCCTGT 57.812 36.000 0.00 0.00 0.00 4.00
3159 3495 7.044181 TGAAAGCTGAGAACTTATATCCTGTG 58.956 38.462 0.00 0.00 0.00 3.66
3160 3496 6.798427 AAGCTGAGAACTTATATCCTGTGA 57.202 37.500 0.00 0.00 0.00 3.58
3161 3497 6.798427 AGCTGAGAACTTATATCCTGTGAA 57.202 37.500 0.00 0.00 0.00 3.18
3162 3498 6.578023 AGCTGAGAACTTATATCCTGTGAAC 58.422 40.000 0.00 0.00 0.00 3.18
3163 3499 6.382570 AGCTGAGAACTTATATCCTGTGAACT 59.617 38.462 0.00 0.00 0.00 3.01
3164 3500 7.044798 GCTGAGAACTTATATCCTGTGAACTT 58.955 38.462 0.00 0.00 0.00 2.66
3165 3501 8.198109 GCTGAGAACTTATATCCTGTGAACTTA 58.802 37.037 0.00 0.00 0.00 2.24
3178 3514 8.997621 TCCTGTGAACTTATATTCTGTGTAAC 57.002 34.615 0.00 0.00 37.35 2.50
3192 3528 6.558771 TCTGTGTAACTTTGATGTTCATGG 57.441 37.500 0.00 0.00 38.04 3.66
3240 3687 3.621268 GCATTGACGTTTATGGTGCTCTA 59.379 43.478 11.34 0.00 0.00 2.43
3423 3870 6.160684 TGCAAATGAAATCAGAACATGGAAG 58.839 36.000 0.00 0.00 0.00 3.46
3494 3941 6.929625 TGAATTGACACTTGTTCCTTCAAAA 58.070 32.000 0.00 0.00 30.34 2.44
3628 4221 3.058501 GTGGTTTGTATTGGACGGACTTG 60.059 47.826 0.00 0.00 0.00 3.16
3633 4226 2.569853 TGTATTGGACGGACTTGGACAT 59.430 45.455 0.00 0.00 0.00 3.06
3637 4230 0.608640 GGACGGACTTGGACATGACT 59.391 55.000 0.00 0.00 0.00 3.41
3660 4253 3.982475 TCTGGACATCGATAGCAACATC 58.018 45.455 0.00 0.00 0.00 3.06
3665 4258 7.176690 TCTGGACATCGATAGCAACATCTTATA 59.823 37.037 0.00 0.00 0.00 0.98
3666 4259 7.666623 TGGACATCGATAGCAACATCTTATAA 58.333 34.615 0.00 0.00 0.00 0.98
3722 4315 8.667987 TGACAATATAGCGAAACAAAAATGTC 57.332 30.769 0.00 0.00 34.44 3.06
3784 4378 1.816835 TCGCACTAAGGACTACCACTG 59.183 52.381 0.00 0.00 38.94 3.66
3814 4408 9.093970 CGATAACATGAATTTAGGAAGTACACA 57.906 33.333 0.00 0.00 0.00 3.72
3828 4422 5.875359 GGAAGTACACAGTCCCTGAAATAAG 59.125 44.000 0.00 0.00 35.18 1.73
3833 4427 5.738909 ACACAGTCCCTGAAATAAGATCTG 58.261 41.667 0.00 0.00 35.18 2.90
4044 4638 4.683832 ACTACATACGGACTGAAATGAGC 58.316 43.478 7.93 0.00 0.00 4.26
4165 4759 3.486542 GCGCTGCCTTCTCATTAAGAAAG 60.487 47.826 0.00 0.00 43.39 2.62
4275 4870 1.514443 GACTACTGCTCGTGGTCGC 60.514 63.158 7.27 0.00 42.95 5.19
4310 4905 8.729756 CCATTGCGATAACATGAATATAGGAAA 58.270 33.333 0.00 0.00 0.00 3.13
4458 5054 9.330063 CTTCTGCTACCACAGATTTATATGAAA 57.670 33.333 0.00 0.00 45.75 2.69
4461 5057 9.888878 CTGCTACCACAGATTTATATGAAATTG 57.111 33.333 0.00 0.00 40.25 2.32
4462 5058 8.352201 TGCTACCACAGATTTATATGAAATTGC 58.648 33.333 0.00 0.00 0.00 3.56
4463 5059 8.352201 GCTACCACAGATTTATATGAAATTGCA 58.648 33.333 0.00 0.00 0.00 4.08
4495 5093 3.788227 TTGTGTTCCTTGTAGCTCCAT 57.212 42.857 0.00 0.00 0.00 3.41
4665 5263 1.991264 CTCTGTCATGAACTGTCTGCG 59.009 52.381 0.00 0.00 0.00 5.18
4673 5271 4.213270 TCATGAACTGTCTGCGGTTAAAAG 59.787 41.667 0.00 0.00 43.67 2.27
4726 5324 4.827692 TGTCACTCGTATTTATGCAAGGT 58.172 39.130 0.00 0.00 0.00 3.50
4776 5374 7.972832 ATAGTCAATGGTCGTCACTTTAAAA 57.027 32.000 0.00 0.00 0.00 1.52
4823 5421 6.964934 CACTTGTAAACTTTAAAGCGTTGACT 59.035 34.615 15.24 0.00 0.00 3.41
5118 5718 7.239763 TGTCAACATAGAGACCTAACATGAA 57.760 36.000 0.00 0.00 33.89 2.57
5119 5719 7.323420 TGTCAACATAGAGACCTAACATGAAG 58.677 38.462 0.00 0.00 33.89 3.02
5121 5721 8.200792 GTCAACATAGAGACCTAACATGAAGAT 58.799 37.037 0.00 0.00 0.00 2.40
5142 5742 4.754411 TTATTAGGGTATCGGAGGGAGT 57.246 45.455 0.00 0.00 0.00 3.85
5235 5835 2.283298 ACTTAAGGTCGCATGATGCTG 58.717 47.619 16.17 9.20 42.25 4.41
5280 5880 8.988064 TCAGTAGATTTTTGTCTGTGTAGATC 57.012 34.615 0.00 0.00 34.94 2.75
5384 5984 5.499139 TGTCATGTTGACCTGAAAACTTC 57.501 39.130 5.27 0.00 46.40 3.01
5392 5992 6.152661 TGTTGACCTGAAAACTTCTGATTGTT 59.847 34.615 0.00 0.00 0.00 2.83
5433 6037 8.514594 TCTGGATTAGTCATTTGCTTGTTTAAG 58.485 33.333 0.00 0.00 36.97 1.85
5554 6158 7.818930 TGAATGCTCTTGTTTTTCTTTTCACTT 59.181 29.630 0.00 0.00 0.00 3.16
5635 6239 8.437274 TGTTAGGAAACTAGAGATCCTCTTTT 57.563 34.615 15.66 0.00 45.45 2.27
5670 6274 7.324178 AGTCAGACTTTTCTATCCATGTGTAC 58.676 38.462 0.00 0.00 0.00 2.90
5671 6275 7.179338 AGTCAGACTTTTCTATCCATGTGTACT 59.821 37.037 0.00 0.00 0.00 2.73
5672 6276 7.489757 GTCAGACTTTTCTATCCATGTGTACTC 59.510 40.741 0.00 0.00 0.00 2.59
5673 6277 6.758886 CAGACTTTTCTATCCATGTGTACTCC 59.241 42.308 0.00 0.00 0.00 3.85
5674 6278 5.990668 ACTTTTCTATCCATGTGTACTCCC 58.009 41.667 0.00 0.00 0.00 4.30
5675 6279 5.726793 ACTTTTCTATCCATGTGTACTCCCT 59.273 40.000 0.00 0.00 0.00 4.20
5676 6280 5.871396 TTTCTATCCATGTGTACTCCCTC 57.129 43.478 0.00 0.00 0.00 4.30
5677 6281 3.845860 TCTATCCATGTGTACTCCCTCC 58.154 50.000 0.00 0.00 0.00 4.30
5678 6282 1.414158 ATCCATGTGTACTCCCTCCG 58.586 55.000 0.00 0.00 0.00 4.63
5679 6283 0.040646 TCCATGTGTACTCCCTCCGT 59.959 55.000 0.00 0.00 0.00 4.69
5680 6284 0.902531 CCATGTGTACTCCCTCCGTT 59.097 55.000 0.00 0.00 0.00 4.44
5681 6285 1.134788 CCATGTGTACTCCCTCCGTTC 60.135 57.143 0.00 0.00 0.00 3.95
5682 6286 0.815734 ATGTGTACTCCCTCCGTTCG 59.184 55.000 0.00 0.00 0.00 3.95
5683 6287 1.246056 TGTGTACTCCCTCCGTTCGG 61.246 60.000 4.74 4.74 0.00 4.30
5684 6288 0.962356 GTGTACTCCCTCCGTTCGGA 60.962 60.000 13.34 13.34 0.00 4.55
5685 6289 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
5686 6290 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
5687 6291 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
5688 6292 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
5689 6293 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
5690 6294 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
5691 6295 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
5692 6296 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
5693 6297 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
5694 6298 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
5695 6299 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
5696 6300 2.030007 TCCGTTCGGAATTACTTGTCGT 60.030 45.455 11.66 0.00 0.00 4.34
5697 6301 3.190327 TCCGTTCGGAATTACTTGTCGTA 59.810 43.478 11.66 0.00 0.00 3.43
5698 6302 3.545078 CCGTTCGGAATTACTTGTCGTAG 59.455 47.826 5.19 0.00 0.00 3.51
5699 6303 4.406069 CGTTCGGAATTACTTGTCGTAGA 58.594 43.478 0.00 0.00 0.00 2.59
5700 6304 4.853196 CGTTCGGAATTACTTGTCGTAGAA 59.147 41.667 0.00 0.00 39.69 2.10
5701 6305 5.343058 CGTTCGGAATTACTTGTCGTAGAAA 59.657 40.000 0.00 0.00 39.69 2.52
5702 6306 6.034256 CGTTCGGAATTACTTGTCGTAGAAAT 59.966 38.462 0.00 0.00 39.69 2.17
5703 6307 6.880822 TCGGAATTACTTGTCGTAGAAATG 57.119 37.500 0.00 0.00 39.69 2.32
5704 6308 5.808540 TCGGAATTACTTGTCGTAGAAATGG 59.191 40.000 0.00 0.00 39.69 3.16
5705 6309 5.808540 CGGAATTACTTGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
5706 6310 6.479001 CGGAATTACTTGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
5707 6311 7.516785 CGGAATTACTTGTCGTAGAAATGGATG 60.517 40.741 0.00 0.00 39.69 3.51
5708 6312 7.280205 GGAATTACTTGTCGTAGAAATGGATGT 59.720 37.037 0.00 0.00 39.69 3.06
5709 6313 9.309516 GAATTACTTGTCGTAGAAATGGATGTA 57.690 33.333 0.00 0.00 39.69 2.29
5710 6314 9.832445 AATTACTTGTCGTAGAAATGGATGTAT 57.168 29.630 0.00 0.00 39.69 2.29
5711 6315 8.867112 TTACTTGTCGTAGAAATGGATGTATC 57.133 34.615 0.00 0.00 39.69 2.24
5712 6316 7.113658 ACTTGTCGTAGAAATGGATGTATCT 57.886 36.000 0.00 0.00 39.69 1.98
5713 6317 8.234136 ACTTGTCGTAGAAATGGATGTATCTA 57.766 34.615 0.00 0.00 39.69 1.98
5714 6318 8.353684 ACTTGTCGTAGAAATGGATGTATCTAG 58.646 37.037 0.00 0.00 39.69 2.43
5715 6319 8.459911 TTGTCGTAGAAATGGATGTATCTAGA 57.540 34.615 0.00 0.00 39.69 2.43
5716 6320 7.872881 TGTCGTAGAAATGGATGTATCTAGAC 58.127 38.462 0.00 0.00 39.69 2.59
5717 6321 7.501225 TGTCGTAGAAATGGATGTATCTAGACA 59.499 37.037 0.00 0.00 39.69 3.41
5718 6322 8.516234 GTCGTAGAAATGGATGTATCTAGACAT 58.484 37.037 0.00 0.00 40.04 3.06
5719 6323 9.078990 TCGTAGAAATGGATGTATCTAGACATT 57.921 33.333 0.00 0.00 40.18 2.71
5720 6324 9.698309 CGTAGAAATGGATGTATCTAGACATTT 57.302 33.333 13.59 13.59 40.18 2.32
5747 6351 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
5748 6352 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
5749 6353 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
5750 6354 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
5751 6355 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
5752 6356 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
5753 6357 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
5754 6358 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
5755 6359 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
5756 6360 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
5757 6361 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
5758 6362 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
5759 6363 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
5760 6364 4.092821 TCCATTTCTGCGACAAGTAATTCG 59.907 41.667 0.00 0.00 38.31 3.34
5761 6365 4.334443 CATTTCTGCGACAAGTAATTCGG 58.666 43.478 0.00 0.00 35.73 4.30
5762 6366 2.004583 TCTGCGACAAGTAATTCGGG 57.995 50.000 0.00 0.00 35.73 5.14
5763 6367 1.546923 TCTGCGACAAGTAATTCGGGA 59.453 47.619 0.00 0.00 35.73 5.14
5764 6368 1.659098 CTGCGACAAGTAATTCGGGAC 59.341 52.381 0.00 0.00 35.73 4.46
5836 6440 0.704664 ATCCCTGTCCCCAACCTTTC 59.295 55.000 0.00 0.00 0.00 2.62
5850 6454 1.081174 ACCTTTCCTCCCTCTCATCCA 59.919 52.381 0.00 0.00 0.00 3.41
5940 6544 2.551721 CCTTATCAGCCCTAGCATGTGG 60.552 54.545 0.00 0.00 43.56 4.17
5984 6588 2.798283 CTGAAAGTGGCTTGCACAAATG 59.202 45.455 0.00 0.00 0.00 2.32
5991 6595 3.560896 GTGGCTTGCACAAATGTTCATTT 59.439 39.130 5.12 5.12 0.00 2.32
6008 6612 6.775629 TGTTCATTTTAGAGCTAACAAAGGGT 59.224 34.615 0.00 0.00 0.00 4.34
6010 6614 7.833285 TCATTTTAGAGCTAACAAAGGGTTT 57.167 32.000 0.00 0.00 40.96 3.27
6032 6636 9.378551 GGTTTGTTAAAAGTTTTGGAGATTTCT 57.621 29.630 11.18 0.00 0.00 2.52
6121 6725 1.632948 GGACGGCGGTTTGCTCTTAC 61.633 60.000 13.24 0.00 45.43 2.34
6140 6744 9.672086 GCTCTTACTCTACACTATACTTCATTG 57.328 37.037 0.00 0.00 0.00 2.82
6252 6857 2.018542 TGCCTAGTAAATGCGGTGTC 57.981 50.000 0.00 0.00 0.00 3.67
6289 6894 5.703978 ATGAGATGAGACAACTCTATCCG 57.296 43.478 9.61 0.00 42.99 4.18
6497 7105 4.582701 TTTTCTGACGTCATTTGCCATT 57.417 36.364 20.40 0.00 0.00 3.16
6793 7404 5.804639 TGTCACTCTTTATGCAATACCAGT 58.195 37.500 0.00 0.00 0.00 4.00
6818 7431 3.134458 GCATAGCTTGTATGTCCACCTC 58.866 50.000 0.00 0.00 0.00 3.85
7024 7655 8.591122 CCTCTACGGACTACATACGGAGTAAAA 61.591 44.444 0.00 0.00 40.61 1.52
7038 7669 6.931838 ACGGAGTAAAATGAGTGAATCTACA 58.068 36.000 0.00 0.00 41.94 2.74
7052 7683 7.036220 AGTGAATCTACACTCTAAAACATCCG 58.964 38.462 0.00 0.00 46.36 4.18
7053 7684 6.255887 GTGAATCTACACTCTAAAACATCCGG 59.744 42.308 0.00 0.00 37.73 5.14
7086 7717 8.826765 TCCATAGTGGAATCTCTAAAAAGACTT 58.173 33.333 0.00 0.00 45.00 3.01
7111 7742 4.525912 TTTAGGAACGGAGGAAGTACAC 57.474 45.455 0.00 0.00 0.00 2.90
7217 7873 0.328258 AAGTCTAGGCCGCCATTTGT 59.672 50.000 13.15 0.00 0.00 2.83
7232 7888 4.679639 GCCATTTGTCATGTCAGATTGCAT 60.680 41.667 12.27 0.00 0.00 3.96
7317 7973 4.130118 GTCACTTGAACCAGTCACATTCT 58.870 43.478 0.00 0.00 35.39 2.40
7320 7976 4.692625 CACTTGAACCAGTCACATTCTAGG 59.307 45.833 0.00 0.00 35.39 3.02
7341 7997 0.723981 CACTCGCTGCTTTCCTTAGC 59.276 55.000 0.00 0.00 41.59 3.09
7368 8024 1.522668 GTATAATGCCGCATGCTCCA 58.477 50.000 17.13 12.66 42.00 3.86
7611 8288 3.411446 TGATTCATTGGCGTCTCAGTTT 58.589 40.909 0.00 0.00 0.00 2.66
7612 8289 3.189080 TGATTCATTGGCGTCTCAGTTTG 59.811 43.478 0.00 0.00 0.00 2.93
7613 8290 2.542020 TCATTGGCGTCTCAGTTTGA 57.458 45.000 0.00 0.00 0.00 2.69
7758 8435 0.680618 CCATTTTTGGGCAGCAGACA 59.319 50.000 0.00 0.00 0.00 3.41
7770 8447 2.479656 GCAGCAGACAGAGAGAAGTTTG 59.520 50.000 0.00 0.00 0.00 2.93
7847 8524 2.169352 ACGGCATGCTCAACTCTTCTAT 59.831 45.455 18.92 0.00 0.00 1.98
8007 8703 9.618890 AGTGCTATGTGTGACTTATGAATATTT 57.381 29.630 0.00 0.00 0.00 1.40
8008 8704 9.869844 GTGCTATGTGTGACTTATGAATATTTC 57.130 33.333 0.00 0.00 0.00 2.17
8009 8705 9.612066 TGCTATGTGTGACTTATGAATATTTCA 57.388 29.630 0.00 0.00 45.01 2.69
8302 8998 1.339711 GCATGTTGCTAAAGCCAACG 58.660 50.000 0.00 0.00 40.96 4.10
8320 9034 2.185387 ACGTGCCACCTATTTCTACCT 58.815 47.619 0.00 0.00 0.00 3.08
8373 9087 4.018597 AGGCTGATCACCAAATCTTCTCTT 60.019 41.667 14.31 0.00 0.00 2.85
8388 9102 5.173664 TCTTCTCTTACACGTCTCGACATA 58.826 41.667 0.00 0.00 0.00 2.29
8405 9119 3.606687 ACATAACCAAATGTCCGAGGAC 58.393 45.455 14.98 14.98 44.77 3.85
8581 9295 9.679661 AAGGGACAAAATTTAACAAAGTTTCAT 57.320 25.926 0.00 0.00 36.64 2.57
8615 9329 9.462606 TGAAATCTAGAACTCTAAAATTTCCCC 57.537 33.333 19.46 7.44 0.00 4.81
8616 9330 9.688091 GAAATCTAGAACTCTAAAATTTCCCCT 57.312 33.333 15.50 0.00 0.00 4.79
8665 9379 2.027285 TGTGTGGTACTGATGGTGATGG 60.027 50.000 0.00 0.00 0.00 3.51
8721 9435 1.002624 TCCTGGACCGTTTGATGGC 60.003 57.895 0.00 0.00 0.00 4.40
8725 9439 2.046285 GGACCGTTTGATGGCCCAG 61.046 63.158 0.00 0.00 25.72 4.45
8751 9465 4.821589 GAGCGGGCGTTCCTCCAG 62.822 72.222 0.00 0.00 0.00 3.86
8761 9475 1.813102 GTTCCTCCAGGATCCAGGAT 58.187 55.000 24.98 0.00 44.98 3.24
8762 9476 1.419387 GTTCCTCCAGGATCCAGGATG 59.581 57.143 24.98 21.66 44.98 3.51
8788 9502 0.316689 CGTCCAACCGCTTGAACAAC 60.317 55.000 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.553323 ACATACAACAACGTCTACCACTC 58.447 43.478 0.00 0.00 0.00 3.51
1 2 4.280174 AGACATACAACAACGTCTACCACT 59.720 41.667 0.00 0.00 36.97 4.00
2 3 4.553323 AGACATACAACAACGTCTACCAC 58.447 43.478 0.00 0.00 36.97 4.16
8 9 8.240883 AGAGAAATAAGACATACAACAACGTC 57.759 34.615 0.00 0.00 0.00 4.34
9 10 8.088981 AGAGAGAAATAAGACATACAACAACGT 58.911 33.333 0.00 0.00 0.00 3.99
10 11 8.467402 AGAGAGAAATAAGACATACAACAACG 57.533 34.615 0.00 0.00 0.00 4.10
29 30 8.838365 CGTACCTTAGCTTTATAGAAAGAGAGA 58.162 37.037 13.94 0.00 44.23 3.10
30 31 7.592164 GCGTACCTTAGCTTTATAGAAAGAGAG 59.408 40.741 13.94 7.17 44.23 3.20
31 32 7.067859 TGCGTACCTTAGCTTTATAGAAAGAGA 59.932 37.037 13.94 0.00 44.23 3.10
32 33 7.201145 TGCGTACCTTAGCTTTATAGAAAGAG 58.799 38.462 13.94 2.45 44.23 2.85
33 34 7.104043 TGCGTACCTTAGCTTTATAGAAAGA 57.896 36.000 13.94 0.00 44.23 2.52
34 35 7.766219 TTGCGTACCTTAGCTTTATAGAAAG 57.234 36.000 5.45 5.45 44.29 2.62
35 36 8.726870 AATTGCGTACCTTAGCTTTATAGAAA 57.273 30.769 0.00 0.00 0.00 2.52
36 37 8.609176 CAAATTGCGTACCTTAGCTTTATAGAA 58.391 33.333 0.00 0.00 0.00 2.10
37 38 7.254658 GCAAATTGCGTACCTTAGCTTTATAGA 60.255 37.037 0.90 0.00 31.71 1.98
38 39 6.851330 GCAAATTGCGTACCTTAGCTTTATAG 59.149 38.462 0.90 0.00 31.71 1.31
39 40 6.721321 GCAAATTGCGTACCTTAGCTTTATA 58.279 36.000 0.90 0.00 31.71 0.98
40 41 5.578776 GCAAATTGCGTACCTTAGCTTTAT 58.421 37.500 0.90 0.00 31.71 1.40
41 42 4.976987 GCAAATTGCGTACCTTAGCTTTA 58.023 39.130 0.90 0.00 31.71 1.85
42 43 3.833442 GCAAATTGCGTACCTTAGCTTT 58.167 40.909 0.90 0.00 31.71 3.51
43 44 3.487563 GCAAATTGCGTACCTTAGCTT 57.512 42.857 0.90 0.00 31.71 3.74
55 56 0.800012 TTCGAGGGTACGCAAATTGC 59.200 50.000 12.95 8.09 40.69 3.56
56 57 3.546002 TTTTCGAGGGTACGCAAATTG 57.454 42.857 12.95 0.00 0.00 2.32
74 75 9.183368 GGGAAATCTCAGACTATGATTCTTTTT 57.817 33.333 3.53 0.00 37.28 1.94
75 76 8.331740 TGGGAAATCTCAGACTATGATTCTTTT 58.668 33.333 3.53 0.00 37.28 2.27
76 77 7.865820 TGGGAAATCTCAGACTATGATTCTTT 58.134 34.615 3.53 0.00 37.28 2.52
77 78 7.443302 TGGGAAATCTCAGACTATGATTCTT 57.557 36.000 3.53 0.00 37.28 2.52
78 79 7.443302 TTGGGAAATCTCAGACTATGATTCT 57.557 36.000 3.53 0.00 37.28 2.40
79 80 7.554118 TGTTTGGGAAATCTCAGACTATGATTC 59.446 37.037 5.66 0.00 37.28 2.52
80 81 7.337942 GTGTTTGGGAAATCTCAGACTATGATT 59.662 37.037 5.66 0.00 37.28 2.57
81 82 6.825721 GTGTTTGGGAAATCTCAGACTATGAT 59.174 38.462 5.66 0.00 37.28 2.45
82 83 6.013379 AGTGTTTGGGAAATCTCAGACTATGA 60.013 38.462 5.66 0.00 36.21 2.15
83 84 6.093219 CAGTGTTTGGGAAATCTCAGACTATG 59.907 42.308 5.66 1.49 0.00 2.23
84 85 6.176183 CAGTGTTTGGGAAATCTCAGACTAT 58.824 40.000 5.66 0.00 0.00 2.12
85 86 5.071788 ACAGTGTTTGGGAAATCTCAGACTA 59.928 40.000 5.66 0.00 0.00 2.59
86 87 4.141390 ACAGTGTTTGGGAAATCTCAGACT 60.141 41.667 5.66 0.00 0.00 3.24
87 88 4.137543 ACAGTGTTTGGGAAATCTCAGAC 58.862 43.478 0.00 0.00 0.00 3.51
88 89 4.437682 ACAGTGTTTGGGAAATCTCAGA 57.562 40.909 0.00 0.00 0.00 3.27
89 90 4.580167 TGAACAGTGTTTGGGAAATCTCAG 59.420 41.667 10.45 0.00 0.00 3.35
90 91 4.531854 TGAACAGTGTTTGGGAAATCTCA 58.468 39.130 10.45 0.00 0.00 3.27
91 92 5.712152 ATGAACAGTGTTTGGGAAATCTC 57.288 39.130 10.45 0.00 0.00 2.75
92 93 5.711976 CCTATGAACAGTGTTTGGGAAATCT 59.288 40.000 10.45 0.00 0.00 2.40
93 94 5.710099 TCCTATGAACAGTGTTTGGGAAATC 59.290 40.000 10.45 0.00 0.00 2.17
94 95 5.640147 TCCTATGAACAGTGTTTGGGAAAT 58.360 37.500 10.45 1.09 0.00 2.17
95 96 5.055265 TCCTATGAACAGTGTTTGGGAAA 57.945 39.130 10.45 0.00 0.00 3.13
96 97 4.715534 TCCTATGAACAGTGTTTGGGAA 57.284 40.909 10.45 0.00 0.00 3.97
97 98 4.715534 TTCCTATGAACAGTGTTTGGGA 57.284 40.909 10.45 9.22 0.00 4.37
98 99 5.009631 TGATTCCTATGAACAGTGTTTGGG 58.990 41.667 10.45 6.85 32.13 4.12
99 100 5.707298 AGTGATTCCTATGAACAGTGTTTGG 59.293 40.000 10.45 10.31 32.13 3.28
100 101 6.205464 ACAGTGATTCCTATGAACAGTGTTTG 59.795 38.462 10.45 2.12 39.91 2.93
101 102 6.299141 ACAGTGATTCCTATGAACAGTGTTT 58.701 36.000 10.45 0.00 39.91 2.83
102 103 5.869579 ACAGTGATTCCTATGAACAGTGTT 58.130 37.500 8.61 8.61 39.91 3.32
103 104 5.489792 ACAGTGATTCCTATGAACAGTGT 57.510 39.130 0.00 13.07 39.10 3.55
104 105 7.413438 GCTTAACAGTGATTCCTATGAACAGTG 60.413 40.741 0.00 0.00 38.06 3.66
113 114 6.048732 TGATGTGCTTAACAGTGATTCCTA 57.951 37.500 0.00 0.00 43.64 2.94
116 117 6.615088 ACATTGATGTGCTTAACAGTGATTC 58.385 36.000 0.00 0.00 43.64 2.52
147 148 4.051922 GGTTTAGATCGGATGCTACAGTG 58.948 47.826 0.00 0.00 0.00 3.66
153 154 0.249911 GGCGGTTTAGATCGGATGCT 60.250 55.000 0.00 0.00 0.00 3.79
161 162 4.201980 GGATTAAAAAGCGGCGGTTTAGAT 60.202 41.667 33.41 25.56 32.76 1.98
165 166 1.614413 TGGATTAAAAAGCGGCGGTTT 59.386 42.857 29.02 29.02 34.60 3.27
179 180 1.475280 CTGGTCTCGTCCGTTGGATTA 59.525 52.381 0.00 0.00 32.73 1.75
188 189 1.376037 CCTTTGCCTGGTCTCGTCC 60.376 63.158 0.00 0.00 0.00 4.79
197 198 0.249398 AGTACCGCTACCTTTGCCTG 59.751 55.000 0.00 0.00 0.00 4.85
198 199 0.249398 CAGTACCGCTACCTTTGCCT 59.751 55.000 0.00 0.00 0.00 4.75
206 215 2.102474 CGAAGCTACAGTACCGCTAC 57.898 55.000 0.00 0.00 32.90 3.58
223 232 2.244000 GCAGTGGCAAAGTTAGCGA 58.756 52.632 0.00 0.00 40.72 4.93
268 277 4.890088 AGAAATGTTACTCTGGTTGCGTA 58.110 39.130 0.00 0.00 0.00 4.42
677 695 1.228737 GGGCACAAAAGGGTAGCCA 60.229 57.895 14.62 0.00 46.96 4.75
682 700 2.123033 GGTGGGGCACAAAAGGGT 60.123 61.111 0.00 0.00 35.86 4.34
983 1006 1.577736 CATCCTCCACACCTCCTCTT 58.422 55.000 0.00 0.00 0.00 2.85
1459 1482 1.012486 GGGAAGAACGTACCAGTGCG 61.012 60.000 6.74 6.74 44.18 5.34
1474 1497 1.779061 GCTCACAGTGGAAGGGGGAA 61.779 60.000 0.00 0.00 0.00 3.97
1476 1499 2.227036 AGCTCACAGTGGAAGGGGG 61.227 63.158 0.00 0.00 0.00 5.40
1477 1500 1.002868 CAGCTCACAGTGGAAGGGG 60.003 63.158 0.00 0.00 0.00 4.79
1478 1501 0.109342 AACAGCTCACAGTGGAAGGG 59.891 55.000 0.00 0.00 0.00 3.95
1615 1938 1.815003 GAGACCATTCCCACAAGCAAG 59.185 52.381 0.00 0.00 0.00 4.01
1724 2047 2.358247 ATCAACACACGCCGGACC 60.358 61.111 5.05 0.00 0.00 4.46
1979 2305 0.752658 CATGTCCATCTCTACGGCCA 59.247 55.000 2.24 0.00 0.00 5.36
2031 2357 0.680061 GGAGGAGCCCTAATGTACGG 59.320 60.000 0.00 0.00 31.76 4.02
2089 2415 0.040204 AGTAGCAGGGCCAGCAAATT 59.960 50.000 23.65 4.58 0.00 1.82
2210 2536 5.068987 AGGTGACATAACAATTGCACAAAGT 59.931 36.000 5.05 0.00 0.00 2.66
2273 2599 2.511879 GGCACGGCAAAATAGTAAACG 58.488 47.619 0.00 0.00 0.00 3.60
2431 2757 9.030452 TGGTGGCAAAGTGTTTTCTATAAATAT 57.970 29.630 0.00 0.00 0.00 1.28
2463 2790 2.476854 GCAAGCGGCTCAATAAAGTGAG 60.477 50.000 1.45 3.14 46.58 3.51
2609 2944 7.202020 GGGGATTTTTCTAAACTAAAACCACCA 60.202 37.037 0.00 0.00 0.00 4.17
2620 2955 7.952671 AGAAAGAACTGGGGATTTTTCTAAAC 58.047 34.615 0.00 0.00 34.24 2.01
2726 3061 3.055819 TCTCCCACTCAATCAGCAAGTAC 60.056 47.826 0.00 0.00 0.00 2.73
2855 3191 8.713971 ACTATACATCCAATGTCCAACTGATAA 58.286 33.333 0.00 0.00 43.67 1.75
2942 3278 1.349026 ACTGTAGCTTCATGTGGCAGT 59.651 47.619 13.18 8.21 0.00 4.40
2975 3311 6.899089 TCTAATTTAAGATGTGCAGGATCCA 58.101 36.000 15.82 0.00 0.00 3.41
3031 3367 4.384208 CGATCAGGTAACAGGGGAAGAAAT 60.384 45.833 0.00 0.00 41.41 2.17
3152 3488 9.601217 GTTACACAGAATATAAGTTCACAGGAT 57.399 33.333 0.00 0.00 0.00 3.24
3153 3489 8.812972 AGTTACACAGAATATAAGTTCACAGGA 58.187 33.333 0.00 0.00 0.00 3.86
3154 3490 9.436957 AAGTTACACAGAATATAAGTTCACAGG 57.563 33.333 0.00 0.00 0.00 4.00
3178 3514 4.390603 CCAATGCAACCATGAACATCAAAG 59.609 41.667 0.00 0.00 0.00 2.77
3181 3517 2.353903 GCCAATGCAACCATGAACATCA 60.354 45.455 0.00 0.00 37.47 3.07
3192 3528 2.739885 TTGTGTATGGCCAATGCAAC 57.260 45.000 10.96 4.92 40.13 4.17
3240 3687 7.554959 TTTGGACAGAAGAACTAGGACTTAT 57.445 36.000 0.00 0.00 0.00 1.73
3511 3958 3.455910 TGGGCTATCAAGTACAGAAGCAT 59.544 43.478 16.34 0.00 0.00 3.79
3628 4221 2.223688 CGATGTCCAGAGAGTCATGTCC 60.224 54.545 0.00 0.00 0.00 4.02
3633 4226 2.881513 GCTATCGATGTCCAGAGAGTCA 59.118 50.000 8.54 0.00 0.00 3.41
3637 4230 3.023832 TGTTGCTATCGATGTCCAGAGA 58.976 45.455 8.54 0.00 0.00 3.10
3666 4259 6.670077 AACATTACAACGCCAATTGTTTTT 57.330 29.167 4.43 0.00 39.86 1.94
3784 4378 6.038271 ACTTCCTAAATTCATGTTATCGCACC 59.962 38.462 0.00 0.00 0.00 5.01
3814 4408 8.100135 AGAATTCAGATCTTATTTCAGGGACT 57.900 34.615 8.44 0.00 43.88 3.85
4072 4666 7.497909 TCCCGAATTATAAGATGTTCCAACTTC 59.502 37.037 0.00 0.00 34.37 3.01
4095 4689 2.671896 TTAGATACTCCCTCCGTCCC 57.328 55.000 0.00 0.00 0.00 4.46
4193 4787 6.439375 ACATGACCACCAGTCTGTAAATAGTA 59.561 38.462 0.00 0.00 46.46 1.82
4197 4791 4.640771 ACATGACCACCAGTCTGTAAAT 57.359 40.909 0.00 0.00 46.46 1.40
4198 4792 4.431416 AACATGACCACCAGTCTGTAAA 57.569 40.909 0.00 0.00 46.46 2.01
4199 4793 4.431416 AAACATGACCACCAGTCTGTAA 57.569 40.909 0.00 0.00 46.46 2.41
4200 4794 4.431416 AAAACATGACCACCAGTCTGTA 57.569 40.909 0.00 0.00 46.46 2.74
4201 4795 3.297134 AAAACATGACCACCAGTCTGT 57.703 42.857 0.00 0.00 46.46 3.41
4202 4796 3.243501 CCAAAAACATGACCACCAGTCTG 60.244 47.826 0.00 0.00 46.46 3.51
4203 4797 2.958355 CCAAAAACATGACCACCAGTCT 59.042 45.455 0.00 0.00 46.46 3.24
4204 4798 2.035832 CCCAAAAACATGACCACCAGTC 59.964 50.000 0.00 0.00 46.51 3.51
4205 4799 2.038659 CCCAAAAACATGACCACCAGT 58.961 47.619 0.00 0.00 0.00 4.00
4206 4800 2.038659 ACCCAAAAACATGACCACCAG 58.961 47.619 0.00 0.00 0.00 4.00
4207 4801 1.759445 CACCCAAAAACATGACCACCA 59.241 47.619 0.00 0.00 0.00 4.17
4280 4875 1.675483 TCATGTTATCGCAATGGTGGC 59.325 47.619 0.00 0.00 0.00 5.01
4458 5054 2.030893 CACAAACCGTCAGTCATGCAAT 60.031 45.455 0.00 0.00 0.00 3.56
4461 5057 0.944386 ACACAAACCGTCAGTCATGC 59.056 50.000 0.00 0.00 0.00 4.06
4462 5058 2.032030 GGAACACAAACCGTCAGTCATG 60.032 50.000 0.00 0.00 0.00 3.07
4463 5059 2.158813 AGGAACACAAACCGTCAGTCAT 60.159 45.455 0.00 0.00 0.00 3.06
4464 5060 1.208535 AGGAACACAAACCGTCAGTCA 59.791 47.619 0.00 0.00 0.00 3.41
4495 5093 2.104792 GGGCCAGCATAGATGTTACAGA 59.895 50.000 4.39 0.00 0.00 3.41
4593 5191 3.712016 TGCAGGTGCTACCAATAAAGA 57.288 42.857 3.18 0.00 41.95 2.52
4643 5241 2.735663 GCAGACAGTTCATGACAGAGTG 59.264 50.000 0.00 0.00 0.00 3.51
4726 5324 1.896220 AGCAGCGACATTCTTCCAAA 58.104 45.000 0.00 0.00 0.00 3.28
4803 5401 9.706846 TTTCTAAGTCAACGCTTTAAAGTTTAC 57.293 29.630 16.38 6.77 0.00 2.01
4873 5472 4.201812 TGAGCAAGACGAAAACTGTTGAAG 60.202 41.667 0.00 0.00 0.00 3.02
4886 5485 7.643528 TTCTAGCAAATATATGAGCAAGACG 57.356 36.000 11.04 0.00 0.00 4.18
5092 5692 7.097192 TCATGTTAGGTCTCTATGTTGACAAC 58.903 38.462 11.54 11.54 35.11 3.32
5118 5718 5.016459 ACTCCCTCCGATACCCTAATAATCT 59.984 44.000 0.00 0.00 0.00 2.40
5119 5719 5.270794 ACTCCCTCCGATACCCTAATAATC 58.729 45.833 0.00 0.00 0.00 1.75
5121 5721 4.754411 ACTCCCTCCGATACCCTAATAA 57.246 45.455 0.00 0.00 0.00 1.40
5207 5807 4.759693 TCATGCGACCTTAAGTTTGTTGAT 59.240 37.500 0.97 0.00 0.00 2.57
5235 5835 0.459489 TGTCTGCACCAGTTTTTGCC 59.541 50.000 0.00 0.00 38.00 4.52
5272 5872 5.131067 GGGAATAAAACTGGGGATCTACAC 58.869 45.833 0.00 0.00 0.00 2.90
5280 5880 3.184382 ACCTTGGGAATAAAACTGGGG 57.816 47.619 0.00 0.00 0.00 4.96
5384 5984 7.325338 CAGAAGACAAGCATAACAAACAATCAG 59.675 37.037 0.00 0.00 0.00 2.90
5392 5992 7.168219 ACTAATCCAGAAGACAAGCATAACAA 58.832 34.615 0.00 0.00 0.00 2.83
5433 6037 2.803451 TGACGCAAAAATCCACAACAC 58.197 42.857 0.00 0.00 0.00 3.32
5494 6098 0.328258 GGGCCATACCACTGTCTTGT 59.672 55.000 4.39 0.00 42.05 3.16
5554 6158 3.386078 TCCTGCCTTGCAAAACAATAACA 59.614 39.130 0.00 0.00 38.41 2.41
5560 6164 1.888512 GATCTCCTGCCTTGCAAAACA 59.111 47.619 0.00 0.30 38.41 2.83
5635 6239 1.131638 AAGTCTGACTTGGTGCTGGA 58.868 50.000 21.47 0.00 37.00 3.86
5670 6274 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
5671 6275 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
5672 6276 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
5673 6277 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
5674 6278 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
5675 6279 2.030007 ACGACAAGTAATTCCGAACGGA 60.030 45.455 12.04 12.04 43.52 4.69
5676 6280 2.331194 ACGACAAGTAATTCCGAACGG 58.669 47.619 6.94 6.94 0.00 4.44
5677 6281 4.406069 TCTACGACAAGTAATTCCGAACG 58.594 43.478 0.00 0.00 34.45 3.95
5678 6282 6.695292 TTTCTACGACAAGTAATTCCGAAC 57.305 37.500 0.00 0.00 34.45 3.95
5679 6283 6.311935 CCATTTCTACGACAAGTAATTCCGAA 59.688 38.462 0.00 0.00 34.45 4.30
5680 6284 5.808540 CCATTTCTACGACAAGTAATTCCGA 59.191 40.000 0.00 0.00 34.45 4.55
5681 6285 5.808540 TCCATTTCTACGACAAGTAATTCCG 59.191 40.000 0.00 0.00 34.45 4.30
5682 6286 7.280205 ACATCCATTTCTACGACAAGTAATTCC 59.720 37.037 0.00 0.00 34.45 3.01
5683 6287 8.197988 ACATCCATTTCTACGACAAGTAATTC 57.802 34.615 0.00 0.00 34.45 2.17
5684 6288 9.832445 ATACATCCATTTCTACGACAAGTAATT 57.168 29.630 0.00 0.00 34.45 1.40
5685 6289 9.477484 GATACATCCATTTCTACGACAAGTAAT 57.523 33.333 0.00 0.00 34.45 1.89
5686 6290 8.692710 AGATACATCCATTTCTACGACAAGTAA 58.307 33.333 0.00 0.00 34.45 2.24
5687 6291 8.234136 AGATACATCCATTTCTACGACAAGTA 57.766 34.615 0.00 0.00 0.00 2.24
5688 6292 7.113658 AGATACATCCATTTCTACGACAAGT 57.886 36.000 0.00 0.00 0.00 3.16
5689 6293 8.568794 TCTAGATACATCCATTTCTACGACAAG 58.431 37.037 0.00 0.00 0.00 3.16
5690 6294 8.350722 GTCTAGATACATCCATTTCTACGACAA 58.649 37.037 0.00 0.00 0.00 3.18
5691 6295 7.501225 TGTCTAGATACATCCATTTCTACGACA 59.499 37.037 0.00 0.00 32.64 4.35
5692 6296 7.872881 TGTCTAGATACATCCATTTCTACGAC 58.127 38.462 0.00 0.00 0.00 4.34
5693 6297 8.637196 ATGTCTAGATACATCCATTTCTACGA 57.363 34.615 0.00 0.00 35.08 3.43
5694 6298 9.698309 AAATGTCTAGATACATCCATTTCTACG 57.302 33.333 9.70 0.00 39.16 3.51
5721 6325 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
5722 6326 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
5723 6327 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
5724 6328 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
5725 6329 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
5726 6330 6.183360 TGTCGCAGAAATGGATGTATCTAGAA 60.183 38.462 0.00 0.00 39.69 2.10
5727 6331 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
5728 6332 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
5729 6333 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
5730 6334 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
5731 6335 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
5732 6336 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
5733 6337 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
5734 6338 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
5735 6339 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
5736 6340 5.220662 CGAATTACTTGTCGCAGAAATGGAT 60.221 40.000 0.00 0.00 39.69 3.41
5737 6341 4.092821 CGAATTACTTGTCGCAGAAATGGA 59.907 41.667 0.00 0.00 39.69 3.41
5738 6342 4.334443 CGAATTACTTGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
5739 6343 4.334443 CCGAATTACTTGTCGCAGAAATG 58.666 43.478 0.00 0.00 39.69 2.32
5740 6344 3.374058 CCCGAATTACTTGTCGCAGAAAT 59.626 43.478 0.00 0.00 39.69 2.17
5741 6345 2.739913 CCCGAATTACTTGTCGCAGAAA 59.260 45.455 0.00 0.00 39.69 2.52
5742 6346 2.028839 TCCCGAATTACTTGTCGCAGAA 60.029 45.455 0.00 0.00 39.69 3.02
5743 6347 1.546923 TCCCGAATTACTTGTCGCAGA 59.453 47.619 0.00 0.00 35.93 4.26
5744 6348 1.659098 GTCCCGAATTACTTGTCGCAG 59.341 52.381 0.00 0.00 35.93 5.18
5745 6349 1.717194 GTCCCGAATTACTTGTCGCA 58.283 50.000 0.00 0.00 35.93 5.10
5746 6350 0.643820 CGTCCCGAATTACTTGTCGC 59.356 55.000 0.00 0.00 35.93 5.19
5747 6351 1.135315 TCCGTCCCGAATTACTTGTCG 60.135 52.381 0.00 0.00 37.01 4.35
5748 6352 2.537401 CTCCGTCCCGAATTACTTGTC 58.463 52.381 0.00 0.00 0.00 3.18
5749 6353 1.206371 CCTCCGTCCCGAATTACTTGT 59.794 52.381 0.00 0.00 0.00 3.16
5750 6354 1.472728 CCCTCCGTCCCGAATTACTTG 60.473 57.143 0.00 0.00 0.00 3.16
5751 6355 0.828677 CCCTCCGTCCCGAATTACTT 59.171 55.000 0.00 0.00 0.00 2.24
5752 6356 0.032813 TCCCTCCGTCCCGAATTACT 60.033 55.000 0.00 0.00 0.00 2.24
5753 6357 0.388294 CTCCCTCCGTCCCGAATTAC 59.612 60.000 0.00 0.00 0.00 1.89
5754 6358 0.032813 ACTCCCTCCGTCCCGAATTA 60.033 55.000 0.00 0.00 0.00 1.40
5755 6359 0.032813 TACTCCCTCCGTCCCGAATT 60.033 55.000 0.00 0.00 0.00 2.17
5756 6360 0.187851 ATACTCCCTCCGTCCCGAAT 59.812 55.000 0.00 0.00 0.00 3.34
5757 6361 0.032813 AATACTCCCTCCGTCCCGAA 60.033 55.000 0.00 0.00 0.00 4.30
5758 6362 0.846015 TAATACTCCCTCCGTCCCGA 59.154 55.000 0.00 0.00 0.00 5.14
5759 6363 1.544691 CATAATACTCCCTCCGTCCCG 59.455 57.143 0.00 0.00 0.00 5.14
5760 6364 1.275573 GCATAATACTCCCTCCGTCCC 59.724 57.143 0.00 0.00 0.00 4.46
5761 6365 1.968493 TGCATAATACTCCCTCCGTCC 59.032 52.381 0.00 0.00 0.00 4.79
5762 6366 3.746045 TTGCATAATACTCCCTCCGTC 57.254 47.619 0.00 0.00 0.00 4.79
5763 6367 3.646162 TGATTGCATAATACTCCCTCCGT 59.354 43.478 0.00 0.00 0.00 4.69
5764 6368 4.271696 TGATTGCATAATACTCCCTCCG 57.728 45.455 0.00 0.00 0.00 4.63
5765 6369 6.240894 TCATTGATTGCATAATACTCCCTCC 58.759 40.000 0.00 0.00 0.00 4.30
5766 6370 7.164122 TCTCATTGATTGCATAATACTCCCTC 58.836 38.462 0.00 0.00 0.00 4.30
5767 6371 7.083062 TCTCATTGATTGCATAATACTCCCT 57.917 36.000 0.00 0.00 0.00 4.20
5768 6372 7.750229 TTCTCATTGATTGCATAATACTCCC 57.250 36.000 0.00 0.00 0.00 4.30
5806 6410 6.911993 TGGGGACAGGGATTATAACTTTAA 57.088 37.500 0.00 0.00 35.01 1.52
5836 6440 1.075970 TCCGTGGATGAGAGGGAGG 60.076 63.158 0.00 0.00 0.00 4.30
5940 6544 6.090898 CAGAGTAGTTTGTGTATGGTAAGTGC 59.909 42.308 0.00 0.00 0.00 4.40
5984 6588 7.215719 ACCCTTTGTTAGCTCTAAAATGAAC 57.784 36.000 0.00 0.00 0.00 3.18
6032 6636 3.263425 AGAAATGGCTCCCTTTCGAACTA 59.737 43.478 0.00 0.00 36.66 2.24
6121 6725 9.539825 AAATGCTCAATGAAGTATAGTGTAGAG 57.460 33.333 0.00 0.00 0.00 2.43
6140 6744 8.589629 CACAATTTTTCACAGCTATAAATGCTC 58.410 33.333 0.00 0.00 38.92 4.26
6252 6857 6.990939 TCTCATCTCATTATGCTCAGAAAAGG 59.009 38.462 0.00 0.00 0.00 3.11
6419 7027 5.525378 CCTGACTGTATCCAAGATAAACTGC 59.475 44.000 0.00 0.00 0.00 4.40
6793 7404 1.142870 GGACATACAAGCTATGCCCCA 59.857 52.381 0.00 0.00 0.00 4.96
6818 7431 6.585695 TCTTACCTAGTTGTCTGTAACCAG 57.414 41.667 0.00 0.00 40.25 4.00
6850 7463 2.094675 ACATAAACAGGGCATGCACTC 58.905 47.619 22.48 8.23 0.00 3.51
6851 7464 2.094675 GACATAAACAGGGCATGCACT 58.905 47.619 19.14 19.14 0.00 4.40
7000 7631 3.827008 ACTCCGTATGTAGTCCGTAGA 57.173 47.619 0.00 0.00 0.00 2.59
7029 7660 6.153851 TCCGGATGTTTTAGAGTGTAGATTCA 59.846 38.462 0.00 0.00 0.00 2.57
7030 7661 6.570692 TCCGGATGTTTTAGAGTGTAGATTC 58.429 40.000 0.00 0.00 0.00 2.52
7032 7663 6.516718 CATCCGGATGTTTTAGAGTGTAGAT 58.483 40.000 32.39 0.00 34.23 1.98
7033 7664 5.902681 CATCCGGATGTTTTAGAGTGTAGA 58.097 41.667 32.39 0.00 34.23 2.59
7086 7717 7.255242 CGTGTACTTCCTCCGTTCCTAAATATA 60.255 40.741 0.00 0.00 0.00 0.86
7111 7742 5.754890 TCATGTGTGGTGAAATATGAGATCG 59.245 40.000 0.00 0.00 0.00 3.69
7217 7873 8.143193 AGTGTTTAAAAATGCAATCTGACATGA 58.857 29.630 0.00 0.00 0.00 3.07
7232 7888 7.650104 GCTGCCAATTGTAGTAGTGTTTAAAAA 59.350 33.333 4.43 0.00 0.00 1.94
7270 7926 8.082242 ACCTTCATTGCAAGTTTACATAAGAAC 58.918 33.333 4.94 0.00 0.00 3.01
7317 7973 0.246635 GGAAAGCAGCGAGTGACCTA 59.753 55.000 0.00 0.00 0.00 3.08
7320 7976 1.996191 CTAAGGAAAGCAGCGAGTGAC 59.004 52.381 0.00 0.00 0.00 3.67
7341 7997 0.780002 GCGGCATTATACGTGTACGG 59.220 55.000 9.40 0.00 44.95 4.02
7368 8024 8.584157 TCACCAATGTTAAATACAGAGCAAAAT 58.416 29.630 0.00 0.00 40.83 1.82
7445 8101 2.626743 ACTGTGGTGTGACTGGTAGTAC 59.373 50.000 0.00 0.00 0.00 2.73
7611 8288 4.566278 CCCTCAAGTCCAACAGATTGATCA 60.566 45.833 0.00 0.00 38.15 2.92
7612 8289 3.944015 CCCTCAAGTCCAACAGATTGATC 59.056 47.826 0.00 0.00 38.15 2.92
7613 8290 3.308688 CCCCTCAAGTCCAACAGATTGAT 60.309 47.826 0.00 0.00 38.15 2.57
7770 8447 3.262420 TCAAAAGGTATCGCTTCTGAGC 58.738 45.455 0.00 0.00 45.65 4.26
7847 8524 4.164030 TGGATCTTCATTCCTCATCCGAAA 59.836 41.667 0.00 0.00 36.55 3.46
8007 8703 1.999648 AAGCAAAAGCTCACCCATGA 58.000 45.000 0.00 0.00 0.00 3.07
8008 8704 2.825861 AAAGCAAAAGCTCACCCATG 57.174 45.000 0.00 0.00 0.00 3.66
8009 8705 3.732212 GAAAAAGCAAAAGCTCACCCAT 58.268 40.909 0.00 0.00 0.00 4.00
8010 8706 2.481104 CGAAAAAGCAAAAGCTCACCCA 60.481 45.455 0.00 0.00 0.00 4.51
8011 8707 2.127251 CGAAAAAGCAAAAGCTCACCC 58.873 47.619 0.00 0.00 0.00 4.61
8012 8708 2.127251 CCGAAAAAGCAAAAGCTCACC 58.873 47.619 0.00 0.00 0.00 4.02
8013 8709 3.078594 TCCGAAAAAGCAAAAGCTCAC 57.921 42.857 0.00 0.00 0.00 3.51
8014 8710 5.048083 ACATATCCGAAAAAGCAAAAGCTCA 60.048 36.000 0.00 0.00 0.00 4.26
8015 8711 5.287035 CACATATCCGAAAAAGCAAAAGCTC 59.713 40.000 0.00 0.00 0.00 4.09
8016 8712 5.163513 CACATATCCGAAAAAGCAAAAGCT 58.836 37.500 0.00 0.00 0.00 3.74
8017 8713 4.923281 ACACATATCCGAAAAAGCAAAAGC 59.077 37.500 0.00 0.00 0.00 3.51
8018 8714 5.920273 ACACACATATCCGAAAAAGCAAAAG 59.080 36.000 0.00 0.00 0.00 2.27
8019 8715 5.837437 ACACACATATCCGAAAAAGCAAAA 58.163 33.333 0.00 0.00 0.00 2.44
8020 8716 5.446143 ACACACATATCCGAAAAAGCAAA 57.554 34.783 0.00 0.00 0.00 3.68
8021 8717 5.446143 AACACACATATCCGAAAAAGCAA 57.554 34.783 0.00 0.00 0.00 3.91
8177 8873 5.964887 TTGCAGAACAAAACATAAAGCAC 57.035 34.783 0.00 0.00 34.56 4.40
8302 8998 4.332828 ACAAAGGTAGAAATAGGTGGCAC 58.667 43.478 9.70 9.70 0.00 5.01
8320 9034 3.634910 GTCCTAAGTTGCTCCCAAACAAA 59.365 43.478 0.00 0.00 31.68 2.83
8373 9087 4.502171 TTTGGTTATGTCGAGACGTGTA 57.498 40.909 8.11 0.00 0.00 2.90
8405 9119 4.043750 GTGATGTCCACACACAATTGTTG 58.956 43.478 8.77 12.83 45.03 3.33
8436 9150 1.300963 GCCCTGATTGCTGTCCTCA 59.699 57.895 0.00 0.00 0.00 3.86
8450 9164 0.331616 AAAAATAGGTCGCCTGCCCT 59.668 50.000 8.44 0.00 34.61 5.19
8492 9206 8.195436 CAGTCTAGCATGAATTTCATCCAATTT 58.805 33.333 8.95 0.00 34.28 1.82
8493 9207 7.201884 CCAGTCTAGCATGAATTTCATCCAATT 60.202 37.037 8.95 0.00 34.28 2.32
8494 9208 6.264744 CCAGTCTAGCATGAATTTCATCCAAT 59.735 38.462 8.95 0.00 34.28 3.16
8654 9368 6.068010 ACTTTGTTAAGTTCCATCACCATCA 58.932 36.000 0.00 0.00 41.85 3.07
8750 9464 1.383109 TCGCACCATCCTGGATCCT 60.383 57.895 14.23 0.00 40.96 3.24
8751 9465 1.227674 GTCGCACCATCCTGGATCC 60.228 63.158 6.13 4.20 40.96 3.36
8761 9475 4.953868 CGGTTGGACGTCGCACCA 62.954 66.667 26.07 11.75 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.