AutoCloner

Multiple sequence alignment - TraesCS4D01G270300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4D01G270300	chr4D	100.000	2351	0	0	1	2351	441127901	441130251	0.000000e+00	4342
1	TraesCS4D01G270300	chr2D	96.081	1684	65	1	1	1683	593126539	593128222	0.000000e+00	2743
2	TraesCS4D01G270300	chr2D	95.967	1686	60	5	1	1681	305961103	305959421	0.000000e+00	2730
3	TraesCS4D01G270300	chr2D	95.541	1682	69	4	1	1681	157031792	157033468	0.000000e+00	2686
4	TraesCS4D01G270300	chr2D	95.363	1682	77	1	1	1681	577792528	577790847	0.000000e+00	2673
5	TraesCS4D01G270300	chr7D	95.781	1683	69	2	1	1682	589251033	589249352	0.000000e+00	2713
6	TraesCS4D01G270300	chr7D	95.552	1686	62	7	1	1681	242796071	242794394	0.000000e+00	2686
7	TraesCS4D01G270300	chr7D	95.433	1686	67	7	1	1681	31418820	31420500	0.000000e+00	2678
8	TraesCS4D01G270300	chr3D	95.841	1683	63	3	1	1682	234618662	234620338	0.000000e+00	2713
9	TraesCS4D01G270300	chr3D	90.217	368	29	5	1984	2351	484292342	484291982	7.600000e-130	473
10	TraesCS4D01G270300	chrUn	95.779	1682	69	2	1	1681	241760751	241759071	0.000000e+00	2712
11	TraesCS4D01G270300	chr4B	87.518	681	32	16	1681	2351	547200962	547201599	0.000000e+00	737
12	TraesCS4D01G270300	chr6D	91.033	368	30	3	1984	2351	10173332	10172968	5.840000e-136	494
13	TraesCS4D01G270300	chr1B	90.515	369	29	5	1985	2351	60016054	60015690	1.260000e-132	483
14	TraesCS4D01G270300	chr4A	90.566	371	23	6	1984	2351	637172487	637172126	4.540000e-132	481
15	TraesCS4D01G270300	chr3B	90.463	367	31	3	1984	2348	463090860	463091224	4.540000e-132	481
16	TraesCS4D01G270300	chr3B	89.973	369	32	3	1984	2351	658605787	658605423	2.730000e-129	472
17	TraesCS4D01G270300	chr3B	89.946	368	34	2	1984	2351	670657838	670657474	2.730000e-129	472
18	TraesCS4D01G270300	chr1D	90.217	368	33	3	1984	2351	380203490	380203854	5.880000e-131	477
19	TraesCS4D01G270300	chr6A	89.785	372	35	1	1980	2351	115410841	115410473	7.600000e-130	473

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4D01G270300	chr4D	441127901	441130251	2350	False	4342	4342	100.000	1	2351	1	chr4D.!!$F1	2350
1	TraesCS4D01G270300	chr2D	593126539	593128222	1683	False	2743	2743	96.081	1	1683	1	chr2D.!!$F2	1682
2	TraesCS4D01G270300	chr2D	305959421	305961103	1682	True	2730	2730	95.967	1	1681	1	chr2D.!!$R1	1680
3	TraesCS4D01G270300	chr2D	157031792	157033468	1676	False	2686	2686	95.541	1	1681	1	chr2D.!!$F1	1680
4	TraesCS4D01G270300	chr2D	577790847	577792528	1681	True	2673	2673	95.363	1	1681	1	chr2D.!!$R2	1680
5	TraesCS4D01G270300	chr7D	589249352	589251033	1681	True	2713	2713	95.781	1	1682	1	chr7D.!!$R2	1681
6	TraesCS4D01G270300	chr7D	242794394	242796071	1677	True	2686	2686	95.552	1	1681	1	chr7D.!!$R1	1680
7	TraesCS4D01G270300	chr7D	31418820	31420500	1680	False	2678	2678	95.433	1	1681	1	chr7D.!!$F1	1680
8	TraesCS4D01G270300	chr3D	234618662	234620338	1676	False	2713	2713	95.841	1	1682	1	chr3D.!!$F1	1681
9	TraesCS4D01G270300	chrUn	241759071	241760751	1680	True	2712	2712	95.779	1	1681	1	chrUn.!!$R1	1680
10	TraesCS4D01G270300	chr4B	547200962	547201599	637	False	737	737	87.518	1681	2351	1	chr4B.!!$F1	670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
962	963	0.248539	CGTAGCAGCGGTAGAACCTC	60.249	60.0	0.0	0.0	35.66	3.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1990	2019	0.973632	ACAAGTACAGATGCACCGGA	59.026	50.0	9.46	0.0	0.0	5.14	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
91	92	0.963856	TGTGTATCCCTGCTCGACGT	60.964	55.000	0.00	0.00	0.00	4.34
122	123	2.350895	CTTGGCGGTGATGTGGGA	59.649	61.111	0.00	0.00	0.00	4.37
319	320	0.917333	CCTAGTGTTAGGGCCCCCAA	60.917	60.000	21.43	10.77	42.44	4.12
373	374	4.489771	GTGACGGGGCAGATGGGG	62.490	72.222	0.00	0.00	0.00	4.96
762	763	4.101448	GCGTCCATGGAGGTGGCT	62.101	66.667	29.85	0.00	39.19	4.75
904	905	1.888436	GATGACCTGCGGAGGACACA	61.888	60.000	31.46	23.84	45.22	3.72
962	963	0.248539	CGTAGCAGCGGTAGAACCTC	60.249	60.000	0.00	0.00	35.66	3.85
1070	1071	3.733344	TAGCAGGGACGATTGGCGC	62.733	63.158	0.00	0.00	46.04	6.53
1356	1360	3.862124	CCGAAGAACTGAGGCACG	58.138	61.111	0.00	0.00	0.00	5.34
1544	1552	5.280624	GGAGGACCTAGGTTAGACTCGATAT	60.281	48.000	17.53	0.00	0.00	1.63
1670	1691	7.345132	TGGTTTACACAGTAGGGCTATAATACA	59.655	37.037	0.00	0.00	0.00	2.29
1699	1720	3.395639	ACAATCGTTAGTTCAGCGGAAA	58.604	40.909	0.00	0.00	34.13	3.13
1703	1724	4.657075	TCGTTAGTTCAGCGGAAATTTC	57.343	40.909	9.83	9.83	34.13	2.17
1742	1763	4.231718	TGTTTCGATAAAAGGCGCTTTT	57.768	36.364	12.22	12.22	44.46	2.27
1748	1769	4.023536	TCGATAAAAGGCGCTTTTGTTCTT	60.024	37.500	18.86	4.82	42.61	2.52
1780	1801	2.872245	GCTTCAAGCGGATACAAGCATA	59.128	45.455	0.00	0.00	39.45	3.14
1807	1828	3.855950	GCAACACTTGATTTCTGCATAGC	59.144	43.478	0.00	0.00	0.00	2.97
1822	1843	2.609459	GCATAGCTAAGACGCACACAAT	59.391	45.455	0.00	0.00	0.00	2.71
1825	1846	2.766313	AGCTAAGACGCACACAATCAA	58.234	42.857	0.00	0.00	0.00	2.57
1827	1848	3.058914	AGCTAAGACGCACACAATCAAAC	60.059	43.478	0.00	0.00	0.00	2.93
1832	1853	4.569943	AGACGCACACAATCAAACTATCT	58.430	39.130	0.00	0.00	0.00	1.98
1853	1874	3.411446	TGACAAATGACATGTCTCCACC	58.589	45.455	25.55	11.43	45.81	4.61
1882	1911	6.366332	AGCAGAATTCACTTACTACTTGTTCG	59.634	38.462	8.44	0.00	0.00	3.95
1906	1935	4.100189	CACAGTCTTACTCCCCATCTTAGG	59.900	50.000	0.00	0.00	0.00	2.69
1981	2010	9.755064	CAATAGTCAACTAAAGGAACAAATACG	57.245	33.333	0.00	0.00	31.39	3.06
1982	2011	9.498176	AATAGTCAACTAAAGGAACAAATACGT	57.502	29.630	0.00	0.00	31.39	3.57
1983	2012	7.186021	AGTCAACTAAAGGAACAAATACGTG	57.814	36.000	0.00	0.00	0.00	4.49
1984	2013	6.987992	AGTCAACTAAAGGAACAAATACGTGA	59.012	34.615	0.00	0.00	0.00	4.35
1985	2014	7.496591	AGTCAACTAAAGGAACAAATACGTGAA	59.503	33.333	0.00	0.00	0.00	3.18
1986	2015	8.287503	GTCAACTAAAGGAACAAATACGTGAAT	58.712	33.333	0.00	0.00	0.00	2.57
1987	2016	8.286800	TCAACTAAAGGAACAAATACGTGAATG	58.713	33.333	0.00	0.00	0.00	2.67
1988	2017	7.739498	ACTAAAGGAACAAATACGTGAATGT	57.261	32.000	0.00	0.00	0.00	2.71
1989	2018	8.836268	ACTAAAGGAACAAATACGTGAATGTA	57.164	30.769	0.00	0.00	0.00	2.29
1990	2019	9.444600	ACTAAAGGAACAAATACGTGAATGTAT	57.555	29.630	0.00	0.00	36.62	2.29
1991	2020	9.916397	CTAAAGGAACAAATACGTGAATGTATC	57.084	33.333	0.00	1.65	34.01	2.24
1992	2021	6.920569	AGGAACAAATACGTGAATGTATCC	57.079	37.500	0.00	9.60	34.01	2.59
1993	2022	5.522460	AGGAACAAATACGTGAATGTATCCG	59.478	40.000	0.00	0.00	34.01	4.18
1994	2023	5.277154	GGAACAAATACGTGAATGTATCCGG	60.277	44.000	0.00	0.00	34.01	5.14
1999	2028	1.134521	ACGTGAATGTATCCGGTGCAT	60.135	47.619	0.00	1.28	34.34	3.96
2019	2048	1.271379	TCTGTACTTGTGGTGCTACCG	59.729	52.381	0.00	0.00	42.58	4.02
2022	2051	0.319083	TACTTGTGGTGCTACCGGTG	59.681	55.000	19.93	8.61	42.58	4.94
2089	2119	8.109705	TCTAGCATGTTAACACAACATCAATT	57.890	30.769	11.22	0.00	38.69	2.32
2212	2242	7.042925	GCCCAAGTTATGTTACGTACTATTCAG	60.043	40.741	0.00	0.00	0.00	3.02
2213	2243	7.977853	CCCAAGTTATGTTACGTACTATTCAGT	59.022	37.037	0.00	0.00	38.91	3.41
2214	2244	8.804743	CCAAGTTATGTTACGTACTATTCAGTG	58.195	37.037	0.00	0.00	36.14	3.66
2215	2245	9.350357	CAAGTTATGTTACGTACTATTCAGTGT	57.650	33.333	0.00	0.00	36.14	3.55
2216	2246	9.918630	AAGTTATGTTACGTACTATTCAGTGTT	57.081	29.630	0.00	0.00	36.14	3.32
2217	2247	9.350357	AGTTATGTTACGTACTATTCAGTGTTG	57.650	33.333	0.00	0.00	36.14	3.33
2218	2248	9.345517	GTTATGTTACGTACTATTCAGTGTTGA	57.654	33.333	0.00	0.00	36.14	3.18
2219	2249	9.911138	TTATGTTACGTACTATTCAGTGTTGAA	57.089	29.630	0.00	0.00	46.67	2.69
2233	2263	8.545229	TTCAGTGTTGAATTTGTCATTTTTGT	57.455	26.923	0.00	0.00	38.37	2.83
2234	2264	8.545229	TCAGTGTTGAATTTGTCATTTTTGTT	57.455	26.923	0.00	0.00	35.70	2.83
2235	2265	8.997323	TCAGTGTTGAATTTGTCATTTTTGTTT	58.003	25.926	0.00	0.00	35.70	2.83
2236	2266	9.053135	CAGTGTTGAATTTGTCATTTTTGTTTG	57.947	29.630	0.00	0.00	35.70	2.93
2237	2267	8.782144	AGTGTTGAATTTGTCATTTTTGTTTGT	58.218	25.926	0.00	0.00	35.70	2.83
2238	2268	9.049974	GTGTTGAATTTGTCATTTTTGTTTGTC	57.950	29.630	0.00	0.00	35.70	3.18
2250	2280	9.015577	TCATTTTTGTTTGTCGAGTTATGTTTC	57.984	29.630	0.00	0.00	0.00	2.78
2272	2302	9.753669	GTTTCGAATTTTGACTTGAAATTTTGT	57.246	25.926	0.00	0.00	36.96	2.83
2300	2330	8.349983	ACAACCTACATTGATGTTGTTTAAGTC	58.650	33.333	13.54	0.00	46.59	3.01
2302	2332	8.099364	ACCTACATTGATGTTGTTTAAGTCTG	57.901	34.615	1.46	0.00	41.97	3.51
2303	2333	7.023575	CCTACATTGATGTTGTTTAAGTCTGC	58.976	38.462	1.46	0.00	41.97	4.26
2306	2336	8.165239	ACATTGATGTTGTTTAAGTCTGCTAA	57.835	30.769	0.00	0.00	37.90	3.09
2307	2337	8.629158	ACATTGATGTTGTTTAAGTCTGCTAAA	58.371	29.630	0.00	0.00	37.90	1.85
2308	2338	9.630098	CATTGATGTTGTTTAAGTCTGCTAAAT	57.370	29.630	0.00	0.00	0.00	1.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
113	114	2.966732	GCCCCGTCTTCCCACATCA	61.967	63.158	0.00	0.00	0.00	3.07
319	320	3.402681	CCCTGCATCGACCCTGGT	61.403	66.667	0.00	0.00	0.00	4.00
443	444	1.373497	CTCTTCACCGAGCAACGCT	60.373	57.895	0.00	0.00	43.88	5.07
762	763	0.603707	CTGGCCTTTGTCTCTTCGCA	60.604	55.000	3.32	0.00	0.00	5.10
878	879	2.063979	CCGCAGGTCATCCCTACCA	61.064	63.158	0.00	0.00	43.86	3.25
904	905	2.812011	GGTTTGTTGATGGTTCGCTACT	59.188	45.455	0.00	0.00	0.00	2.57
1042	1043	2.821366	CCCTGCTACTGGCGCAAG	60.821	66.667	11.17	11.17	45.43	4.01
1070	1071	3.781770	GATCCTGTCGCAGCTCCGG	62.782	68.421	0.00	0.00	0.00	5.14
1077	1078	2.571757	GTCGTGGATCCTGTCGCA	59.428	61.111	14.23	3.61	0.00	5.10
1291	1295	3.771160	GCCGATCCCACCGTCACT	61.771	66.667	0.00	0.00	0.00	3.41
1437	1442	4.467084	TCCATGACCGCTTCCGCC	62.467	66.667	0.00	0.00	0.00	6.13
1567	1575	2.487986	CCTTTGAGGGTTGAGCAGTTCT	60.488	50.000	0.00	0.00	0.00	3.01
1699	1720	5.163311	ACAAAGCTGGCTAAAAACTGGAAAT	60.163	36.000	0.00	0.00	0.00	2.17
1703	1724	3.733443	ACAAAGCTGGCTAAAAACTGG	57.267	42.857	0.00	0.00	0.00	4.00
1705	1726	4.097286	TCGAAACAAAGCTGGCTAAAAACT	59.903	37.500	0.00	0.00	0.00	2.66
1742	1763	6.697019	GCTTGAAGCTACATTTTCAAAGAACA	59.303	34.615	10.44	0.00	41.30	3.18
1748	1769	3.818210	TCCGCTTGAAGCTACATTTTCAA	59.182	39.130	15.92	0.00	39.60	2.69
1780	1801	4.038282	TGCAGAAATCAAGTGTTGCTCATT	59.962	37.500	0.00	0.00	33.00	2.57
1807	1828	4.732285	AGTTTGATTGTGTGCGTCTTAG	57.268	40.909	0.00	0.00	0.00	2.18
1822	1843	7.879677	AGACATGTCATTTGTCAGATAGTTTGA	59.120	33.333	27.02	0.00	44.73	2.69
1825	1846	6.820656	GGAGACATGTCATTTGTCAGATAGTT	59.179	38.462	27.02	0.61	44.73	2.24
1827	1848	6.257411	GTGGAGACATGTCATTTGTCAGATAG	59.743	42.308	27.02	0.00	44.73	2.08
1832	1853	3.072915	AGGTGGAGACATGTCATTTGTCA	59.927	43.478	27.02	12.33	44.73	3.58
1853	1874	7.386299	ACAAGTAGTAAGTGAATTCTGCTCAAG	59.614	37.037	7.05	0.00	0.00	3.02
1882	1911	1.834263	AGATGGGGAGTAAGACTGTGC	59.166	52.381	0.00	0.00	0.00	4.57
1906	1935	7.864379	CAGAACATATAGGAAAAATGTGATGCC	59.136	37.037	0.00	0.00	34.20	4.40
1981	2010	2.545526	CAGATGCACCGGATACATTCAC	59.454	50.000	9.46	0.00	0.00	3.18
1982	2011	2.170397	ACAGATGCACCGGATACATTCA	59.830	45.455	9.46	0.00	0.00	2.57
1983	2012	2.838736	ACAGATGCACCGGATACATTC	58.161	47.619	9.46	3.37	0.00	2.67
1984	2013	3.388024	AGTACAGATGCACCGGATACATT	59.612	43.478	9.46	0.00	0.00	2.71
1985	2014	2.965831	AGTACAGATGCACCGGATACAT	59.034	45.455	9.46	8.56	0.00	2.29
1986	2015	2.384828	AGTACAGATGCACCGGATACA	58.615	47.619	9.46	2.78	0.00	2.29
1987	2016	3.123804	CAAGTACAGATGCACCGGATAC	58.876	50.000	9.46	0.00	0.00	2.24
1988	2017	2.764010	ACAAGTACAGATGCACCGGATA	59.236	45.455	9.46	0.00	0.00	2.59
1989	2018	1.555075	ACAAGTACAGATGCACCGGAT	59.445	47.619	9.46	0.00	0.00	4.18
1990	2019	0.973632	ACAAGTACAGATGCACCGGA	59.026	50.000	9.46	0.00	0.00	5.14
1991	2020	1.078709	CACAAGTACAGATGCACCGG	58.921	55.000	0.00	0.00	0.00	5.28
1992	2021	1.078709	CCACAAGTACAGATGCACCG	58.921	55.000	0.00	0.00	0.00	4.94
1993	2022	1.806542	CACCACAAGTACAGATGCACC	59.193	52.381	0.00	0.00	0.00	5.01
1994	2023	1.197721	GCACCACAAGTACAGATGCAC	59.802	52.381	0.00	0.00	0.00	4.57
1999	2028	1.271379	CGGTAGCACCACAAGTACAGA	59.729	52.381	0.00	0.00	38.47	3.41
2019	2048	2.988010	TCTATGACATCCAGTGCACC	57.012	50.000	14.63	0.00	0.00	5.01
2159	2189	5.210430	AGATTTGGCCCATTATCACATTGA	58.790	37.500	0.00	0.00	0.00	2.57
2161	2191	7.673641	TTTAGATTTGGCCCATTATCACATT	57.326	32.000	0.00	0.00	0.00	2.71
2162	2192	6.239402	GCTTTAGATTTGGCCCATTATCACAT	60.239	38.462	0.00	0.00	0.00	3.21
2212	2242	8.947304	ACAAACAAAAATGACAAATTCAACAC	57.053	26.923	0.00	0.00	37.92	3.32
2213	2243	7.954248	CGACAAACAAAAATGACAAATTCAACA	59.046	29.630	0.00	0.00	37.92	3.33
2214	2244	8.165428	TCGACAAACAAAAATGACAAATTCAAC	58.835	29.630	0.00	0.00	37.92	3.18
2215	2245	8.244494	TCGACAAACAAAAATGACAAATTCAA	57.756	26.923	0.00	0.00	37.92	2.69
2216	2246	7.543868	ACTCGACAAACAAAAATGACAAATTCA	59.456	29.630	0.00	0.00	39.11	2.57
2217	2247	7.894847	ACTCGACAAACAAAAATGACAAATTC	58.105	30.769	0.00	0.00	0.00	2.17
2218	2248	7.826260	ACTCGACAAACAAAAATGACAAATT	57.174	28.000	0.00	0.00	0.00	1.82
2219	2249	7.826260	AACTCGACAAACAAAAATGACAAAT	57.174	28.000	0.00	0.00	0.00	2.32
2220	2250	8.802856	CATAACTCGACAAACAAAAATGACAAA	58.197	29.630	0.00	0.00	0.00	2.83
2221	2251	7.971168	ACATAACTCGACAAACAAAAATGACAA	59.029	29.630	0.00	0.00	0.00	3.18
2222	2252	7.476667	ACATAACTCGACAAACAAAAATGACA	58.523	30.769	0.00	0.00	0.00	3.58
2223	2253	7.908193	ACATAACTCGACAAACAAAAATGAC	57.092	32.000	0.00	0.00	0.00	3.06
2224	2254	8.918961	AAACATAACTCGACAAACAAAAATGA	57.081	26.923	0.00	0.00	0.00	2.57
2225	2255	7.990499	CGAAACATAACTCGACAAACAAAAATG	59.010	33.333	0.00	0.00	37.23	2.32
2226	2256	7.911205	TCGAAACATAACTCGACAAACAAAAAT	59.089	29.630	0.00	0.00	39.07	1.82
2227	2257	7.242079	TCGAAACATAACTCGACAAACAAAAA	58.758	30.769	0.00	0.00	39.07	1.94
2228	2258	6.773080	TCGAAACATAACTCGACAAACAAAA	58.227	32.000	0.00	0.00	39.07	2.44
2229	2259	6.347270	TCGAAACATAACTCGACAAACAAA	57.653	33.333	0.00	0.00	39.07	2.83
2230	2260	5.970140	TCGAAACATAACTCGACAAACAA	57.030	34.783	0.00	0.00	39.07	2.83
2231	2261	5.970140	TTCGAAACATAACTCGACAAACA	57.030	34.783	0.00	0.00	43.35	2.83
2232	2262	7.831750	AAATTCGAAACATAACTCGACAAAC	57.168	32.000	0.00	0.00	43.35	2.93
2233	2263	8.123575	TCAAAATTCGAAACATAACTCGACAAA	58.876	29.630	0.00	0.00	43.35	2.83
2234	2264	7.584847	GTCAAAATTCGAAACATAACTCGACAA	59.415	33.333	0.00	0.00	43.35	3.18
2235	2265	7.042321	AGTCAAAATTCGAAACATAACTCGACA	60.042	33.333	0.00	0.00	43.35	4.35
2236	2266	7.288672	AGTCAAAATTCGAAACATAACTCGAC	58.711	34.615	0.00	0.28	43.35	4.20
2237	2267	7.416154	AGTCAAAATTCGAAACATAACTCGA	57.584	32.000	0.00	0.00	42.05	4.04
2238	2268	7.796660	TCAAGTCAAAATTCGAAACATAACTCG	59.203	33.333	0.00	0.00	36.39	4.18
2250	2280	8.379161	TGTCACAAAATTTCAAGTCAAAATTCG	58.621	29.630	0.00	0.00	35.75	3.34
2277	2307	7.308589	GCAGACTTAAACAACATCAATGTAGGT	60.309	37.037	0.00	0.00	40.80	3.08

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.