Multiple sequence alignment - TraesCS4D01G270000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G270000 chr4D 100.000 3950 0 0 1 3950 441075463 441079412 0.000000e+00 7295.0
1 TraesCS4D01G270000 chr4D 93.478 276 17 1 2238 2512 55347226 55347501 3.670000e-110 409.0
2 TraesCS4D01G270000 chr4D 74.630 540 104 19 2090 2602 440283175 440283708 1.440000e-49 207.0
3 TraesCS4D01G270000 chr4D 88.571 140 16 0 1285 1424 440038255 440038394 1.890000e-38 171.0
4 TraesCS4D01G270000 chr4D 91.509 106 9 0 2626 2731 55349263 55349368 3.180000e-31 147.0
5 TraesCS4D01G270000 chr4D 92.105 76 5 1 3819 3893 430891240 430891315 5.400000e-19 106.0
6 TraesCS4D01G270000 chr4B 90.229 1351 87 21 1647 2965 546819732 546821069 0.000000e+00 1722.0
7 TraesCS4D01G270000 chr4B 89.251 614 40 11 950 1559 546818690 546819281 0.000000e+00 745.0
8 TraesCS4D01G270000 chr4B 88.208 636 58 10 2999 3626 546822478 546823104 0.000000e+00 743.0
9 TraesCS4D01G270000 chr4B 88.584 219 6 9 646 858 546734172 546734377 8.480000e-62 248.0
10 TraesCS4D01G270000 chr4B 87.857 140 17 0 1285 1424 545148914 545149053 8.780000e-37 165.0
11 TraesCS4D01G270000 chr4B 92.857 98 6 1 3854 3950 546823202 546823299 1.480000e-29 141.0
12 TraesCS4D01G270000 chr4B 92.553 94 7 0 717 810 546818582 546818675 6.890000e-28 135.0
13 TraesCS4D01G270000 chr4B 88.350 103 8 2 550 649 546734048 546734149 1.930000e-23 121.0
14 TraesCS4D01G270000 chr4B 81.818 154 18 5 356 506 546817858 546818004 1.930000e-23 121.0
15 TraesCS4D01G270000 chr4B 84.000 100 12 3 550 649 546818446 546818541 4.200000e-15 93.5
16 TraesCS4D01G270000 chr4A 91.402 1163 73 13 1836 2972 26545552 26544391 0.000000e+00 1568.0
17 TraesCS4D01G270000 chr4A 90.084 716 62 5 2261 2972 26541703 26540993 0.000000e+00 920.0
18 TraesCS4D01G270000 chr4A 87.619 630 65 9 3027 3649 675598210 675598833 0.000000e+00 719.0
19 TraesCS4D01G270000 chr4A 86.152 686 58 18 1101 1774 26546457 26545797 0.000000e+00 706.0
20 TraesCS4D01G270000 chr4A 83.463 387 25 21 641 1014 26546861 26546501 1.370000e-84 324.0
21 TraesCS4D01G270000 chr4A 74.857 525 114 14 2090 2600 29380287 29380807 5.140000e-54 222.0
22 TraesCS4D01G270000 chr4A 82.212 208 34 3 15 219 737319028 737319235 4.060000e-40 176.0
23 TraesCS4D01G270000 chr4A 87.143 140 18 0 1285 1424 29302933 29303072 4.090000e-35 159.0
24 TraesCS4D01G270000 chr4A 86.861 137 18 0 1288 1424 140718325 140718189 1.900000e-33 154.0
25 TraesCS4D01G270000 chr3A 89.414 614 58 6 3027 3637 720854590 720855199 0.000000e+00 767.0
26 TraesCS4D01G270000 chr3A 87.974 607 61 8 3027 3626 549911354 549911955 0.000000e+00 706.0
27 TraesCS4D01G270000 chr3A 86.957 138 18 0 1287 1424 736940833 736940696 5.280000e-34 156.0
28 TraesCS4D01G270000 chr3A 91.566 83 6 1 3817 3898 478807217 478807299 3.230000e-21 113.0
29 TraesCS4D01G270000 chr5D 89.525 611 54 6 3023 3627 543496038 543495432 0.000000e+00 765.0
30 TraesCS4D01G270000 chr5D 89.244 595 58 5 3046 3637 480153876 480153285 0.000000e+00 739.0
31 TraesCS4D01G270000 chr5D 95.238 168 7 1 3655 3822 480153170 480153004 8.420000e-67 265.0
32 TraesCS4D01G270000 chr5D 95.161 62 3 0 3889 3950 390547381 390547320 9.030000e-17 99.0
33 TraesCS4D01G270000 chr3B 90.101 596 48 9 3027 3618 420305116 420304528 0.000000e+00 763.0
34 TraesCS4D01G270000 chr3B 89.552 268 22 4 3600 3862 420304493 420304227 6.320000e-88 335.0
35 TraesCS4D01G270000 chr3B 95.092 163 8 0 3655 3817 25488103 25487941 1.410000e-64 257.0
36 TraesCS4D01G270000 chr5A 87.981 624 51 13 3027 3635 662523220 662523834 0.000000e+00 715.0
37 TraesCS4D01G270000 chr5A 94.048 168 9 1 3655 3822 662523905 662524071 1.820000e-63 254.0
38 TraesCS4D01G270000 chr5A 100.000 29 0 0 15 43 692056215 692056187 2.000000e-03 54.7
39 TraesCS4D01G270000 chr5B 88.284 606 56 8 3028 3626 11304978 11304381 0.000000e+00 712.0
40 TraesCS4D01G270000 chr5B 94.643 168 8 1 3655 3822 11304256 11304090 3.920000e-65 259.0
41 TraesCS4D01G270000 chr5B 91.250 80 3 1 3821 3896 315165351 315165272 5.400000e-19 106.0
42 TraesCS4D01G270000 chr5B 95.161 62 3 0 3889 3950 36407252 36407313 9.030000e-17 99.0
43 TraesCS4D01G270000 chr5B 95.161 62 3 0 3889 3950 347393903 347393964 9.030000e-17 99.0
44 TraesCS4D01G270000 chr3D 95.833 168 6 1 3655 3822 438059691 438059525 1.810000e-68 270.0
45 TraesCS4D01G270000 chr3D 92.500 80 3 3 3820 3898 3821340 3821263 1.160000e-20 111.0
46 TraesCS4D01G270000 chr3D 95.161 62 3 0 3889 3950 438059526 438059465 9.030000e-17 99.0
47 TraesCS4D01G270000 chr1D 95.706 163 7 0 3655 3817 218326462 218326300 3.030000e-66 263.0
48 TraesCS4D01G270000 chr1D 94.286 70 4 0 3821 3890 6327251 6327182 1.500000e-19 108.0
49 TraesCS4D01G270000 chr1D 89.744 78 7 1 3821 3897 8284234 8284311 9.030000e-17 99.0
50 TraesCS4D01G270000 chr1D 84.286 70 7 3 3749 3818 349469816 349469751 9.160000e-07 65.8
51 TraesCS4D01G270000 chrUn 94.479 163 9 0 3655 3817 342706548 342706386 6.550000e-63 252.0
52 TraesCS4D01G270000 chrUn 95.161 62 3 0 3889 3950 342706383 342706322 9.030000e-17 99.0
53 TraesCS4D01G270000 chr2B 94.479 163 9 0 3655 3817 5159562 5159724 6.550000e-63 252.0
54 TraesCS4D01G270000 chr2B 95.161 62 3 0 3889 3950 166812064 166812003 9.030000e-17 99.0
55 TraesCS4D01G270000 chr1A 89.820 167 11 1 2374 2540 348395878 348396038 4.000000e-50 209.0
56 TraesCS4D01G270000 chr1A 93.007 143 9 1 2238 2379 348384038 348384180 1.440000e-49 207.0
57 TraesCS4D01G270000 chr1A 88.618 123 14 0 1288 1410 102378746 102378624 2.460000e-32 150.0
58 TraesCS4D01G270000 chr1A 90.566 106 10 0 2626 2731 348396037 348396142 1.480000e-29 141.0
59 TraesCS4D01G270000 chr1A 95.000 60 3 0 3891 3950 559047156 559047097 1.170000e-15 95.3
60 TraesCS4D01G270000 chr7A 86.131 137 19 0 1288 1424 33752886 33752750 8.840000e-32 148.0
61 TraesCS4D01G270000 chr1B 94.521 73 1 2 3821 3890 683479781 683479853 4.170000e-20 110.0
62 TraesCS4D01G270000 chr6A 92.208 77 5 1 3821 3896 552997029 552996953 1.500000e-19 108.0
63 TraesCS4D01G270000 chr7D 95.000 60 3 0 3889 3948 58737315 58737374 1.170000e-15 95.3
64 TraesCS4D01G270000 chr2D 83.133 83 14 0 2501 2583 381869102 381869184 4.230000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G270000 chr4D 441075463 441079412 3949 False 7295.000000 7295 100.000000 1 3950 1 chr4D.!!$F4 3949
1 TraesCS4D01G270000 chr4D 55347226 55349368 2142 False 278.000000 409 92.493500 2238 2731 2 chr4D.!!$F5 493
2 TraesCS4D01G270000 chr4D 440283175 440283708 533 False 207.000000 207 74.630000 2090 2602 1 chr4D.!!$F3 512
3 TraesCS4D01G270000 chr4B 546817858 546823299 5441 False 528.642857 1722 88.416571 356 3950 7 chr4B.!!$F3 3594
4 TraesCS4D01G270000 chr4A 26540993 26546861 5868 True 879.500000 1568 87.775250 641 2972 4 chr4A.!!$R2 2331
5 TraesCS4D01G270000 chr4A 675598210 675598833 623 False 719.000000 719 87.619000 3027 3649 1 chr4A.!!$F3 622
6 TraesCS4D01G270000 chr4A 29380287 29380807 520 False 222.000000 222 74.857000 2090 2600 1 chr4A.!!$F2 510
7 TraesCS4D01G270000 chr3A 720854590 720855199 609 False 767.000000 767 89.414000 3027 3637 1 chr3A.!!$F3 610
8 TraesCS4D01G270000 chr3A 549911354 549911955 601 False 706.000000 706 87.974000 3027 3626 1 chr3A.!!$F2 599
9 TraesCS4D01G270000 chr5D 543495432 543496038 606 True 765.000000 765 89.525000 3023 3627 1 chr5D.!!$R2 604
10 TraesCS4D01G270000 chr5D 480153004 480153876 872 True 502.000000 739 92.241000 3046 3822 2 chr5D.!!$R3 776
11 TraesCS4D01G270000 chr3B 420304227 420305116 889 True 549.000000 763 89.826500 3027 3862 2 chr3B.!!$R2 835
12 TraesCS4D01G270000 chr5A 662523220 662524071 851 False 484.500000 715 91.014500 3027 3822 2 chr5A.!!$F1 795
13 TraesCS4D01G270000 chr5B 11304090 11304978 888 True 485.500000 712 91.463500 3028 3822 2 chr5B.!!$R2 794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 251 0.028110 GAACGGCATGCCTTTCGATC 59.972 55.0 32.56 20.46 35.23 3.69 F
294 295 0.030638 CAACAACAAAGGGGAGTGCG 59.969 55.0 0.00 0.00 0.00 5.34 F
546 946 0.035056 AACATGCACTACTGGCCTCC 60.035 55.0 3.32 0.00 0.00 4.30 F
548 948 0.035152 CATGCACTACTGGCCTCCAA 60.035 55.0 3.32 0.00 30.80 3.53 F
1072 1508 0.037790 ACTCTTCGCTGCTCTGTTCC 60.038 55.0 0.00 0.00 0.00 3.62 F
2748 5602 0.173481 CGGCGATCAAGTTCCTCAGA 59.827 55.0 0.00 0.00 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1803 2662 0.388520 TGGTCAGAGCATCGTTCGTG 60.389 55.000 0.00 0.00 42.67 4.35 R
2033 3102 1.279840 GCGGTGCAGACAAGAACAC 59.720 57.895 0.00 0.00 0.00 3.32 R
2056 3126 1.392168 CACGCACGTATCCGATTTTGT 59.608 47.619 9.04 0.00 37.88 2.83 R
2205 3302 1.817099 GAACTGCAGCATCTCGGGG 60.817 63.158 15.27 0.00 0.00 5.73 R
2766 5620 0.395311 CCATCACTCTGGCCAGCAAT 60.395 55.000 28.91 14.61 0.00 3.56 R
3557 10544 9.267084 GCAAAAATACCCACAAAAGAAAGAATA 57.733 29.630 0.00 0.00 0.00 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 0.591659 GTTTGAGACGGGTTTGAGGC 59.408 55.000 0.00 0.00 0.00 4.70
44 45 0.536460 TTTGAGACGGGTTTGAGGCC 60.536 55.000 0.00 0.00 0.00 5.19
45 46 2.434359 GAGACGGGTTTGAGGCCG 60.434 66.667 0.00 0.00 0.00 6.13
46 47 4.699522 AGACGGGTTTGAGGCCGC 62.700 66.667 0.00 0.00 0.00 6.53
47 48 4.699522 GACGGGTTTGAGGCCGCT 62.700 66.667 8.34 0.00 0.00 5.52
49 50 4.697756 CGGGTTTGAGGCCGCTGA 62.698 66.667 8.34 0.00 0.00 4.26
50 51 3.056328 GGGTTTGAGGCCGCTGAC 61.056 66.667 8.34 6.16 0.00 3.51
51 52 2.032681 GGTTTGAGGCCGCTGACT 59.967 61.111 8.34 0.00 0.00 3.41
52 53 2.328099 GGTTTGAGGCCGCTGACTG 61.328 63.158 8.34 0.00 0.00 3.51
53 54 1.598130 GTTTGAGGCCGCTGACTGT 60.598 57.895 8.34 0.00 0.00 3.55
54 55 0.320421 GTTTGAGGCCGCTGACTGTA 60.320 55.000 8.34 0.00 0.00 2.74
55 56 0.037326 TTTGAGGCCGCTGACTGTAG 60.037 55.000 8.34 0.00 0.00 2.74
56 57 0.898326 TTGAGGCCGCTGACTGTAGA 60.898 55.000 8.34 0.00 0.00 2.59
57 58 0.684479 TGAGGCCGCTGACTGTAGAT 60.684 55.000 8.34 0.00 0.00 1.98
58 59 0.249238 GAGGCCGCTGACTGTAGATG 60.249 60.000 0.00 0.00 0.00 2.90
59 60 0.684479 AGGCCGCTGACTGTAGATGA 60.684 55.000 0.00 0.00 0.00 2.92
60 61 0.390860 GGCCGCTGACTGTAGATGAT 59.609 55.000 0.00 0.00 0.00 2.45
61 62 1.604185 GGCCGCTGACTGTAGATGATC 60.604 57.143 0.00 0.00 0.00 2.92
62 63 1.339610 GCCGCTGACTGTAGATGATCT 59.660 52.381 0.00 0.00 0.00 2.75
63 64 2.861750 GCCGCTGACTGTAGATGATCTG 60.862 54.545 4.96 0.00 0.00 2.90
64 65 2.620585 CCGCTGACTGTAGATGATCTGA 59.379 50.000 4.96 0.00 0.00 3.27
65 66 3.255395 CCGCTGACTGTAGATGATCTGAT 59.745 47.826 4.96 0.00 0.00 2.90
66 67 4.261952 CCGCTGACTGTAGATGATCTGATT 60.262 45.833 4.96 0.00 0.00 2.57
67 68 4.680567 CGCTGACTGTAGATGATCTGATTG 59.319 45.833 4.96 0.00 0.00 2.67
68 69 4.989797 GCTGACTGTAGATGATCTGATTGG 59.010 45.833 4.96 0.00 0.00 3.16
69 70 5.221402 GCTGACTGTAGATGATCTGATTGGA 60.221 44.000 4.96 0.00 0.00 3.53
70 71 6.402456 TGACTGTAGATGATCTGATTGGAG 57.598 41.667 4.96 0.00 0.00 3.86
71 72 5.212532 ACTGTAGATGATCTGATTGGAGC 57.787 43.478 4.96 0.00 0.00 4.70
72 73 4.040217 ACTGTAGATGATCTGATTGGAGCC 59.960 45.833 4.96 0.00 0.00 4.70
73 74 4.229639 TGTAGATGATCTGATTGGAGCCT 58.770 43.478 4.96 0.00 0.00 4.58
74 75 4.282957 TGTAGATGATCTGATTGGAGCCTC 59.717 45.833 4.96 0.00 0.00 4.70
75 76 2.299582 AGATGATCTGATTGGAGCCTCG 59.700 50.000 0.00 0.00 0.00 4.63
76 77 1.489481 TGATCTGATTGGAGCCTCGT 58.511 50.000 0.00 0.00 0.00 4.18
77 78 1.137675 TGATCTGATTGGAGCCTCGTG 59.862 52.381 0.00 0.00 0.00 4.35
78 79 1.410517 GATCTGATTGGAGCCTCGTGA 59.589 52.381 0.00 0.00 0.00 4.35
79 80 1.489481 TCTGATTGGAGCCTCGTGAT 58.511 50.000 0.00 0.00 0.00 3.06
80 81 1.833630 TCTGATTGGAGCCTCGTGATT 59.166 47.619 0.00 0.00 0.00 2.57
81 82 1.938577 CTGATTGGAGCCTCGTGATTG 59.061 52.381 0.00 0.00 0.00 2.67
82 83 1.303309 GATTGGAGCCTCGTGATTGG 58.697 55.000 0.00 0.00 0.00 3.16
87 88 4.445699 GCCTCGTGATTGGCCTAG 57.554 61.111 3.32 0.00 43.11 3.02
88 89 1.227674 GCCTCGTGATTGGCCTAGG 60.228 63.158 3.67 3.67 43.11 3.02
89 90 1.227674 CCTCGTGATTGGCCTAGGC 60.228 63.158 26.55 26.55 41.06 3.93
99 100 4.115199 GCCTAGGCCACCCTGGTG 62.115 72.222 24.19 9.42 42.90 4.17
100 101 2.610859 CCTAGGCCACCCTGGTGT 60.611 66.667 14.89 0.00 42.90 4.16
101 102 2.231380 CCTAGGCCACCCTGGTGTT 61.231 63.158 14.89 3.51 42.90 3.32
102 103 1.767692 CTAGGCCACCCTGGTGTTT 59.232 57.895 14.89 3.18 42.90 2.83
103 104 0.609131 CTAGGCCACCCTGGTGTTTG 60.609 60.000 14.89 1.53 42.90 2.93
104 105 2.075355 TAGGCCACCCTGGTGTTTGG 62.075 60.000 14.89 1.10 42.90 3.28
106 107 2.917227 CCACCCTGGTGTTTGGCC 60.917 66.667 14.89 0.00 44.02 5.36
107 108 2.198426 CACCCTGGTGTTTGGCCT 59.802 61.111 3.32 0.00 40.91 5.19
108 109 1.903404 CACCCTGGTGTTTGGCCTC 60.903 63.158 3.32 0.00 40.91 4.70
109 110 2.084930 ACCCTGGTGTTTGGCCTCT 61.085 57.895 3.32 0.00 0.00 3.69
110 111 1.153756 CCCTGGTGTTTGGCCTCTT 59.846 57.895 3.32 0.00 0.00 2.85
111 112 1.181098 CCCTGGTGTTTGGCCTCTTG 61.181 60.000 3.32 0.00 0.00 3.02
112 113 1.662044 CTGGTGTTTGGCCTCTTGC 59.338 57.895 3.32 0.00 40.16 4.01
113 114 1.076412 TGGTGTTTGGCCTCTTGCA 60.076 52.632 3.32 0.00 43.89 4.08
114 115 0.685785 TGGTGTTTGGCCTCTTGCAA 60.686 50.000 3.32 0.00 43.89 4.08
115 116 0.463620 GGTGTTTGGCCTCTTGCAAA 59.536 50.000 3.32 0.00 43.89 3.68
117 118 0.104671 TGTTTGGCCTCTTGCAAAGC 59.895 50.000 3.32 3.80 45.70 3.51
118 119 0.390492 GTTTGGCCTCTTGCAAAGCT 59.610 50.000 3.32 0.00 45.70 3.74
119 120 0.390124 TTTGGCCTCTTGCAAAGCTG 59.610 50.000 3.32 0.00 45.70 4.24
120 121 0.756442 TTGGCCTCTTGCAAAGCTGT 60.756 50.000 3.32 0.00 45.70 4.40
121 122 1.288127 GGCCTCTTGCAAAGCTGTG 59.712 57.895 13.56 0.00 45.70 3.66
122 123 1.174712 GGCCTCTTGCAAAGCTGTGA 61.175 55.000 8.49 0.52 45.70 3.58
123 124 0.886563 GCCTCTTGCAAAGCTGTGAT 59.113 50.000 8.49 0.00 45.70 3.06
124 125 1.271656 GCCTCTTGCAAAGCTGTGATT 59.728 47.619 8.49 0.00 45.70 2.57
125 126 2.288640 GCCTCTTGCAAAGCTGTGATTT 60.289 45.455 8.49 0.00 45.70 2.17
126 127 3.801293 GCCTCTTGCAAAGCTGTGATTTT 60.801 43.478 8.49 0.00 45.70 1.82
127 128 4.374399 CCTCTTGCAAAGCTGTGATTTTT 58.626 39.130 8.49 0.00 45.70 1.94
165 166 9.620660 ATGCTCGTTTTATAACTAAACTTTTGG 57.379 29.630 0.00 0.00 34.20 3.28
166 167 7.592164 TGCTCGTTTTATAACTAAACTTTTGGC 59.408 33.333 0.00 0.00 34.20 4.52
167 168 7.806487 GCTCGTTTTATAACTAAACTTTTGGCT 59.194 33.333 0.00 0.00 34.20 4.75
168 169 9.326339 CTCGTTTTATAACTAAACTTTTGGCTC 57.674 33.333 0.00 0.00 34.20 4.70
169 170 9.059260 TCGTTTTATAACTAAACTTTTGGCTCT 57.941 29.630 0.00 0.00 34.20 4.09
170 171 9.113876 CGTTTTATAACTAAACTTTTGGCTCTG 57.886 33.333 0.00 0.00 34.20 3.35
171 172 8.912658 GTTTTATAACTAAACTTTTGGCTCTGC 58.087 33.333 0.00 0.00 33.71 4.26
172 173 7.996098 TTATAACTAAACTTTTGGCTCTGCT 57.004 32.000 0.00 0.00 0.00 4.24
173 174 6.901081 ATAACTAAACTTTTGGCTCTGCTT 57.099 33.333 0.00 0.00 0.00 3.91
174 175 5.598416 AACTAAACTTTTGGCTCTGCTTT 57.402 34.783 0.00 0.00 0.00 3.51
175 176 5.598416 ACTAAACTTTTGGCTCTGCTTTT 57.402 34.783 0.00 0.00 0.00 2.27
176 177 5.977635 ACTAAACTTTTGGCTCTGCTTTTT 58.022 33.333 0.00 0.00 0.00 1.94
194 195 4.585955 TTTTTGGCGGCAGTATGTTTAA 57.414 36.364 12.87 0.00 39.31 1.52
195 196 4.585955 TTTTGGCGGCAGTATGTTTAAA 57.414 36.364 12.87 4.34 39.31 1.52
196 197 4.585955 TTTGGCGGCAGTATGTTTAAAA 57.414 36.364 12.87 0.00 39.31 1.52
197 198 4.585955 TTGGCGGCAGTATGTTTAAAAA 57.414 36.364 12.87 0.00 39.31 1.94
223 224 2.978010 CACAACAGGTGTCCCGGC 60.978 66.667 0.00 0.00 42.75 6.13
224 225 4.265056 ACAACAGGTGTCCCGGCC 62.265 66.667 0.00 0.00 34.38 6.13
225 226 3.953775 CAACAGGTGTCCCGGCCT 61.954 66.667 0.00 0.00 35.12 5.19
226 227 2.203877 AACAGGTGTCCCGGCCTA 60.204 61.111 0.00 0.00 33.07 3.93
227 228 1.844289 AACAGGTGTCCCGGCCTAA 60.844 57.895 0.00 0.00 33.07 2.69
228 229 1.838073 AACAGGTGTCCCGGCCTAAG 61.838 60.000 0.00 0.00 33.07 2.18
229 230 1.987855 CAGGTGTCCCGGCCTAAGA 60.988 63.158 0.00 0.00 33.07 2.10
230 231 1.686110 AGGTGTCCCGGCCTAAGAG 60.686 63.158 0.00 0.00 35.12 2.85
231 232 2.732619 GGTGTCCCGGCCTAAGAGG 61.733 68.421 0.00 0.00 38.80 3.69
232 233 1.684734 GTGTCCCGGCCTAAGAGGA 60.685 63.158 0.00 0.00 37.67 3.71
233 234 1.079621 TGTCCCGGCCTAAGAGGAA 59.920 57.895 0.00 0.00 37.67 3.36
234 235 1.262640 TGTCCCGGCCTAAGAGGAAC 61.263 60.000 0.00 0.00 37.67 3.62
235 236 2.056223 TCCCGGCCTAAGAGGAACG 61.056 63.158 0.00 0.09 37.67 3.95
236 237 2.499685 CCGGCCTAAGAGGAACGG 59.500 66.667 12.64 12.64 45.90 4.44
237 238 2.202892 CGGCCTAAGAGGAACGGC 60.203 66.667 0.00 0.00 37.67 5.68
238 239 2.987125 GGCCTAAGAGGAACGGCA 59.013 61.111 0.00 0.00 44.23 5.69
239 240 1.527370 GGCCTAAGAGGAACGGCAT 59.473 57.895 0.00 0.00 44.23 4.40
240 241 0.815615 GGCCTAAGAGGAACGGCATG 60.816 60.000 0.00 0.00 44.23 4.06
241 242 1.440145 GCCTAAGAGGAACGGCATGC 61.440 60.000 9.90 9.90 42.06 4.06
242 243 0.815615 CCTAAGAGGAACGGCATGCC 60.816 60.000 27.67 27.67 37.67 4.40
243 244 0.179000 CTAAGAGGAACGGCATGCCT 59.821 55.000 33.07 17.14 33.97 4.75
244 245 0.618458 TAAGAGGAACGGCATGCCTT 59.382 50.000 33.07 23.13 30.70 4.35
245 246 0.251341 AAGAGGAACGGCATGCCTTT 60.251 50.000 33.07 30.08 30.70 3.11
246 247 0.678048 AGAGGAACGGCATGCCTTTC 60.678 55.000 36.03 36.03 41.78 2.62
247 248 1.982073 GAGGAACGGCATGCCTTTCG 61.982 60.000 35.94 25.34 42.94 3.46
248 249 2.038269 GGAACGGCATGCCTTTCGA 61.038 57.895 35.94 0.00 42.94 3.71
249 250 1.376609 GGAACGGCATGCCTTTCGAT 61.377 55.000 35.94 19.84 42.94 3.59
250 251 0.028110 GAACGGCATGCCTTTCGATC 59.972 55.000 32.56 20.46 35.23 3.69
251 252 1.705337 AACGGCATGCCTTTCGATCG 61.705 55.000 33.07 19.55 0.00 3.69
252 253 2.885676 CGGCATGCCTTTCGATCGG 61.886 63.158 33.07 11.50 0.00 4.18
253 254 2.329339 GCATGCCTTTCGATCGGC 59.671 61.111 16.41 16.22 46.46 5.54
254 255 3.025619 CATGCCTTTCGATCGGCC 58.974 61.111 16.41 0.00 45.71 6.13
255 256 1.819208 CATGCCTTTCGATCGGCCA 60.819 57.895 16.41 5.96 45.71 5.36
256 257 1.819632 ATGCCTTTCGATCGGCCAC 60.820 57.895 16.41 2.28 45.71 5.01
257 258 3.202706 GCCTTTCGATCGGCCACC 61.203 66.667 16.41 0.00 40.43 4.61
258 259 2.513897 CCTTTCGATCGGCCACCC 60.514 66.667 16.41 0.00 0.00 4.61
259 260 2.584608 CTTTCGATCGGCCACCCT 59.415 61.111 16.41 0.00 0.00 4.34
260 261 1.078426 CTTTCGATCGGCCACCCTT 60.078 57.895 16.41 0.00 0.00 3.95
261 262 1.369091 CTTTCGATCGGCCACCCTTG 61.369 60.000 16.41 0.00 0.00 3.61
262 263 3.969250 TTCGATCGGCCACCCTTGC 62.969 63.158 16.41 0.00 0.00 4.01
268 269 4.702274 GGCCACCCTTGCCCATGT 62.702 66.667 0.00 0.00 43.33 3.21
269 270 3.384532 GCCACCCTTGCCCATGTG 61.385 66.667 0.00 0.00 0.00 3.21
270 271 2.681064 CCACCCTTGCCCATGTGG 60.681 66.667 0.00 0.00 42.01 4.17
280 281 3.355077 CCCATGTGGCTACCAACAA 57.645 52.632 0.00 0.00 34.18 2.83
281 282 0.887933 CCCATGTGGCTACCAACAAC 59.112 55.000 0.00 0.00 34.18 3.32
282 283 1.614996 CCATGTGGCTACCAACAACA 58.385 50.000 0.00 0.00 34.18 3.33
283 284 1.959985 CCATGTGGCTACCAACAACAA 59.040 47.619 0.00 0.00 34.18 2.83
284 285 2.363680 CCATGTGGCTACCAACAACAAA 59.636 45.455 0.00 0.00 34.18 2.83
285 286 3.552684 CCATGTGGCTACCAACAACAAAG 60.553 47.826 0.00 0.00 34.18 2.77
286 287 2.028130 TGTGGCTACCAACAACAAAGG 58.972 47.619 0.00 0.00 34.18 3.11
287 288 1.339929 GTGGCTACCAACAACAAAGGG 59.660 52.381 0.00 0.00 34.18 3.95
288 289 0.966179 GGCTACCAACAACAAAGGGG 59.034 55.000 0.00 0.00 0.00 4.79
289 290 1.479757 GGCTACCAACAACAAAGGGGA 60.480 52.381 0.00 0.00 0.00 4.81
290 291 1.886542 GCTACCAACAACAAAGGGGAG 59.113 52.381 0.00 0.00 34.30 4.30
291 292 2.751816 GCTACCAACAACAAAGGGGAGT 60.752 50.000 0.00 0.00 33.66 3.85
292 293 1.775385 ACCAACAACAAAGGGGAGTG 58.225 50.000 0.00 0.00 0.00 3.51
293 294 0.389025 CCAACAACAAAGGGGAGTGC 59.611 55.000 0.00 0.00 0.00 4.40
294 295 0.030638 CAACAACAAAGGGGAGTGCG 59.969 55.000 0.00 0.00 0.00 5.34
295 296 1.734388 AACAACAAAGGGGAGTGCGC 61.734 55.000 0.00 0.00 0.00 6.09
296 297 2.192861 CAACAAAGGGGAGTGCGCA 61.193 57.895 5.66 5.66 0.00 6.09
297 298 1.454847 AACAAAGGGGAGTGCGCAA 60.455 52.632 14.00 0.00 0.00 4.85
298 299 0.827507 AACAAAGGGGAGTGCGCAAT 60.828 50.000 14.00 12.73 0.00 3.56
299 300 0.037590 ACAAAGGGGAGTGCGCAATA 59.962 50.000 14.00 0.00 0.00 1.90
300 301 1.340991 ACAAAGGGGAGTGCGCAATAT 60.341 47.619 14.00 0.00 0.00 1.28
301 302 1.334869 CAAAGGGGAGTGCGCAATATC 59.665 52.381 14.00 11.08 0.00 1.63
302 303 0.179018 AAGGGGAGTGCGCAATATCC 60.179 55.000 22.91 22.91 0.00 2.59
303 304 1.056700 AGGGGAGTGCGCAATATCCT 61.057 55.000 27.20 24.26 32.18 3.24
304 305 0.603975 GGGGAGTGCGCAATATCCTC 60.604 60.000 27.20 23.22 32.18 3.71
305 306 0.394565 GGGAGTGCGCAATATCCTCT 59.605 55.000 27.20 14.31 32.18 3.69
306 307 1.606737 GGGAGTGCGCAATATCCTCTC 60.607 57.143 27.20 19.41 32.18 3.20
307 308 1.342819 GGAGTGCGCAATATCCTCTCT 59.657 52.381 23.43 10.14 0.00 3.10
308 309 2.402305 GAGTGCGCAATATCCTCTCTG 58.598 52.381 14.00 0.00 0.00 3.35
309 310 1.759445 AGTGCGCAATATCCTCTCTGT 59.241 47.619 14.00 0.00 0.00 3.41
310 311 2.959030 AGTGCGCAATATCCTCTCTGTA 59.041 45.455 14.00 0.00 0.00 2.74
311 312 3.053455 GTGCGCAATATCCTCTCTGTAC 58.947 50.000 14.00 0.00 0.00 2.90
312 313 2.035961 TGCGCAATATCCTCTCTGTACC 59.964 50.000 8.16 0.00 0.00 3.34
313 314 2.297597 GCGCAATATCCTCTCTGTACCT 59.702 50.000 0.30 0.00 0.00 3.08
314 315 3.506455 GCGCAATATCCTCTCTGTACCTA 59.494 47.826 0.30 0.00 0.00 3.08
315 316 4.022242 GCGCAATATCCTCTCTGTACCTAA 60.022 45.833 0.30 0.00 0.00 2.69
316 317 5.462405 CGCAATATCCTCTCTGTACCTAAC 58.538 45.833 0.00 0.00 0.00 2.34
317 318 5.009710 CGCAATATCCTCTCTGTACCTAACA 59.990 44.000 0.00 0.00 36.42 2.41
318 319 6.461092 CGCAATATCCTCTCTGTACCTAACAA 60.461 42.308 0.00 0.00 37.74 2.83
319 320 7.272978 GCAATATCCTCTCTGTACCTAACAAA 58.727 38.462 0.00 0.00 37.74 2.83
320 321 7.224949 GCAATATCCTCTCTGTACCTAACAAAC 59.775 40.741 0.00 0.00 37.74 2.93
321 322 7.973048 ATATCCTCTCTGTACCTAACAAACA 57.027 36.000 0.00 0.00 37.74 2.83
322 323 6.681729 ATCCTCTCTGTACCTAACAAACAA 57.318 37.500 0.00 0.00 37.74 2.83
323 324 6.488769 TCCTCTCTGTACCTAACAAACAAA 57.511 37.500 0.00 0.00 37.74 2.83
324 325 7.074653 TCCTCTCTGTACCTAACAAACAAAT 57.925 36.000 0.00 0.00 37.74 2.32
325 326 8.197592 TCCTCTCTGTACCTAACAAACAAATA 57.802 34.615 0.00 0.00 37.74 1.40
326 327 8.092687 TCCTCTCTGTACCTAACAAACAAATAC 58.907 37.037 0.00 0.00 37.74 1.89
327 328 7.063074 CCTCTCTGTACCTAACAAACAAATACG 59.937 40.741 0.00 0.00 37.74 3.06
328 329 7.436118 TCTCTGTACCTAACAAACAAATACGT 58.564 34.615 0.00 0.00 37.74 3.57
329 330 8.575589 TCTCTGTACCTAACAAACAAATACGTA 58.424 33.333 0.00 0.00 37.74 3.57
330 331 8.746922 TCTGTACCTAACAAACAAATACGTAG 57.253 34.615 0.08 0.00 37.74 3.51
331 332 7.814107 TCTGTACCTAACAAACAAATACGTAGG 59.186 37.037 0.08 0.00 37.74 3.18
332 333 7.665690 TGTACCTAACAAACAAATACGTAGGA 58.334 34.615 0.08 0.00 34.29 2.94
333 334 8.313292 TGTACCTAACAAACAAATACGTAGGAT 58.687 33.333 0.08 0.00 34.29 3.24
334 335 9.801873 GTACCTAACAAACAAATACGTAGGATA 57.198 33.333 0.08 0.00 0.00 2.59
336 337 9.895138 ACCTAACAAACAAATACGTAGGATAAT 57.105 29.630 0.08 0.00 0.00 1.28
351 352 9.498176 ACGTAGGATAATGTTAACTTTCTTGTT 57.502 29.630 9.79 0.00 0.00 2.83
355 356 8.957466 AGGATAATGTTAACTTTCTTGTTAGGC 58.043 33.333 9.79 0.00 34.43 3.93
356 357 8.736244 GGATAATGTTAACTTTCTTGTTAGGCA 58.264 33.333 9.79 0.00 34.43 4.75
363 364 9.406828 GTTAACTTTCTTGTTAGGCAAAATAGG 57.593 33.333 0.00 0.00 36.53 2.57
377 378 6.015940 AGGCAAAATAGGATAATGTTAGCTGC 60.016 38.462 0.00 0.00 0.00 5.25
382 383 6.974932 ATAGGATAATGTTAGCTGCAATCG 57.025 37.500 1.02 0.00 0.00 3.34
385 386 5.008019 AGGATAATGTTAGCTGCAATCGTTG 59.992 40.000 1.02 0.00 0.00 4.10
397 399 2.521958 AATCGTTGGTCGGCTCCAGG 62.522 60.000 0.00 0.00 38.80 4.45
398 400 4.760047 CGTTGGTCGGCTCCAGGG 62.760 72.222 0.00 0.00 38.80 4.45
404 406 0.748367 GGTCGGCTCCAGGGATTTTC 60.748 60.000 0.00 0.00 0.00 2.29
409 411 2.529632 GGCTCCAGGGATTTTCAGTTT 58.470 47.619 0.00 0.00 0.00 2.66
416 418 5.536161 TCCAGGGATTTTCAGTTTTCTTCAG 59.464 40.000 0.00 0.00 0.00 3.02
429 431 1.142748 CTTCAGTAGCCGCCTCTGG 59.857 63.158 11.00 0.00 0.00 3.86
449 451 3.984508 GCACATAATCAATGAGCTGCT 57.015 42.857 0.00 0.00 45.53 4.24
450 452 3.629058 GCACATAATCAATGAGCTGCTG 58.371 45.455 7.01 0.00 45.53 4.41
451 453 3.314357 GCACATAATCAATGAGCTGCTGA 59.686 43.478 7.01 0.00 45.53 4.26
452 454 4.201980 GCACATAATCAATGAGCTGCTGAA 60.202 41.667 7.01 0.00 45.53 3.02
453 455 5.511571 CACATAATCAATGAGCTGCTGAAG 58.488 41.667 7.01 0.00 39.07 3.02
454 456 4.036498 ACATAATCAATGAGCTGCTGAAGC 59.964 41.667 7.01 0.00 44.70 3.86
455 457 6.946649 ACATAATCAATGAGCTGCTGAAGCC 61.947 44.000 7.01 0.00 45.11 4.35
485 487 5.514500 AACCATCTAGGCAGTTTCCTTTA 57.486 39.130 0.00 0.00 43.14 1.85
488 490 4.884164 CCATCTAGGCAGTTTCCTTTAAGG 59.116 45.833 4.29 4.29 37.66 2.69
489 491 3.951663 TCTAGGCAGTTTCCTTTAAGGC 58.048 45.455 6.05 0.00 37.66 4.35
493 495 2.514803 GCAGTTTCCTTTAAGGCTCCA 58.485 47.619 6.05 0.00 34.61 3.86
497 499 3.263425 AGTTTCCTTTAAGGCTCCATCGA 59.737 43.478 6.05 0.00 34.61 3.59
500 502 3.309296 TCCTTTAAGGCTCCATCGATCT 58.691 45.455 6.05 0.00 34.61 2.75
506 508 1.967066 AGGCTCCATCGATCTGTAAGG 59.033 52.381 0.00 0.00 0.00 2.69
507 509 1.689273 GGCTCCATCGATCTGTAAGGT 59.311 52.381 0.00 0.00 0.00 3.50
508 510 2.546795 GGCTCCATCGATCTGTAAGGTG 60.547 54.545 0.00 0.00 0.00 4.00
509 511 2.546795 GCTCCATCGATCTGTAAGGTGG 60.547 54.545 0.00 0.00 0.00 4.61
510 512 2.959030 CTCCATCGATCTGTAAGGTGGA 59.041 50.000 0.00 0.00 35.82 4.02
512 514 2.430694 CCATCGATCTGTAAGGTGGACA 59.569 50.000 0.00 0.00 33.50 4.02
514 516 3.868757 TCGATCTGTAAGGTGGACAAG 57.131 47.619 0.00 0.00 21.51 3.16
515 517 3.427573 TCGATCTGTAAGGTGGACAAGA 58.572 45.455 0.00 0.00 21.51 3.02
516 518 4.023980 TCGATCTGTAAGGTGGACAAGAT 58.976 43.478 0.00 0.00 21.51 2.40
517 519 4.466370 TCGATCTGTAAGGTGGACAAGATT 59.534 41.667 0.00 0.00 21.51 2.40
519 521 5.624509 CGATCTGTAAGGTGGACAAGATTCA 60.625 44.000 0.00 0.00 0.00 2.57
520 522 5.152623 TCTGTAAGGTGGACAAGATTCAG 57.847 43.478 0.00 0.00 0.00 3.02
522 524 5.485353 TCTGTAAGGTGGACAAGATTCAGAT 59.515 40.000 0.00 0.00 0.00 2.90
523 525 5.734720 TGTAAGGTGGACAAGATTCAGATC 58.265 41.667 0.00 0.00 0.00 2.75
524 526 3.922171 AGGTGGACAAGATTCAGATCC 57.078 47.619 0.00 0.00 32.44 3.36
525 527 3.184628 AGGTGGACAAGATTCAGATCCA 58.815 45.455 0.00 0.00 37.11 3.41
526 528 3.199508 AGGTGGACAAGATTCAGATCCAG 59.800 47.826 3.73 0.00 40.09 3.86
527 529 3.198635 GGTGGACAAGATTCAGATCCAGA 59.801 47.826 3.73 0.00 40.09 3.86
529 531 4.633565 GTGGACAAGATTCAGATCCAGAAC 59.366 45.833 0.73 0.00 40.09 3.01
531 533 5.045359 TGGACAAGATTCAGATCCAGAACAT 60.045 40.000 0.73 0.00 34.50 2.71
532 534 5.296283 GGACAAGATTCAGATCCAGAACATG 59.704 44.000 0.73 0.00 32.44 3.21
533 535 4.639310 ACAAGATTCAGATCCAGAACATGC 59.361 41.667 0.00 0.00 32.44 4.06
534 536 4.498894 AGATTCAGATCCAGAACATGCA 57.501 40.909 0.00 0.00 32.44 3.96
537 539 4.824479 TTCAGATCCAGAACATGCACTA 57.176 40.909 0.00 0.00 0.00 2.74
538 540 4.128925 TCAGATCCAGAACATGCACTAC 57.871 45.455 0.00 0.00 0.00 2.73
541 543 2.768253 TCCAGAACATGCACTACTGG 57.232 50.000 18.75 18.75 46.33 4.00
542 544 1.089920 CCAGAACATGCACTACTGGC 58.910 55.000 14.83 0.00 40.90 4.85
546 946 0.035056 AACATGCACTACTGGCCTCC 60.035 55.000 3.32 0.00 0.00 4.30
547 947 1.200760 ACATGCACTACTGGCCTCCA 61.201 55.000 3.32 0.00 0.00 3.86
548 948 0.035152 CATGCACTACTGGCCTCCAA 60.035 55.000 3.32 0.00 30.80 3.53
554 954 2.054799 ACTACTGGCCTCCAAAACTGA 58.945 47.619 3.32 0.00 30.80 3.41
556 956 2.683211 ACTGGCCTCCAAAACTGATT 57.317 45.000 3.32 0.00 30.80 2.57
561 961 3.026694 GGCCTCCAAAACTGATTGCTAT 58.973 45.455 0.00 0.00 0.00 2.97
562 962 3.181483 GGCCTCCAAAACTGATTGCTATG 60.181 47.826 0.00 0.00 0.00 2.23
564 964 4.439289 GCCTCCAAAACTGATTGCTATGAC 60.439 45.833 0.00 0.00 0.00 3.06
568 968 5.357878 TCCAAAACTGATTGCTATGACCATC 59.642 40.000 0.00 0.00 0.00 3.51
574 974 5.587844 ACTGATTGCTATGACCATCAGTTTC 59.412 40.000 7.66 0.00 44.12 2.78
578 978 2.286294 GCTATGACCATCAGTTTCAGCG 59.714 50.000 0.00 0.00 0.00 5.18
615 1015 0.388006 TTCATCATGCGTCGACGTGT 60.388 50.000 35.48 22.90 42.22 4.49
617 1017 0.566136 CATCATGCGTCGACGTGTAC 59.434 55.000 35.48 21.06 42.22 2.90
618 1018 0.450583 ATCATGCGTCGACGTGTACT 59.549 50.000 35.48 17.39 42.22 2.73
620 1020 1.177668 CATGCGTCGACGTGTACTAC 58.822 55.000 35.48 19.31 42.22 2.73
667 1091 3.674523 TCGCAGACGAGCAGCACT 61.675 61.111 0.00 0.00 45.12 4.40
682 1106 3.667960 GCAGCACTACAATCTTGAAACCG 60.668 47.826 0.00 0.00 0.00 4.44
686 1110 5.761234 AGCACTACAATCTTGAAACCGTTTA 59.239 36.000 0.00 0.00 0.00 2.01
706 1130 2.699954 ACGGTACTTGCCAAGAATCTG 58.300 47.619 12.25 8.22 0.00 2.90
712 1136 2.044946 GCCAAGAATCTGCCCGGT 60.045 61.111 0.00 0.00 0.00 5.28
719 1143 0.759346 GAATCTGCCCGGTCATACCT 59.241 55.000 0.00 0.00 35.66 3.08
721 1145 0.469917 ATCTGCCCGGTCATACCTTG 59.530 55.000 0.00 0.00 35.66 3.61
722 1146 1.819632 CTGCCCGGTCATACCTTGC 60.820 63.158 0.00 0.00 35.66 4.01
800 1232 0.951040 CGGTGGACCAAAGTCAGAGC 60.951 60.000 0.00 0.00 45.48 4.09
811 1243 2.621556 AGTCAGAGCTCTCCTTCCTT 57.378 50.000 14.96 0.00 0.00 3.36
812 1244 2.456577 AGTCAGAGCTCTCCTTCCTTC 58.543 52.381 14.96 0.00 0.00 3.46
814 1246 1.360852 TCAGAGCTCTCCTTCCTTCCT 59.639 52.381 14.96 0.00 0.00 3.36
858 1290 3.264450 AGAAAGAATCCGGTCATCCAACT 59.736 43.478 0.00 0.00 0.00 3.16
859 1291 2.990066 AGAATCCGGTCATCCAACTC 57.010 50.000 0.00 0.00 0.00 3.01
860 1292 1.486726 AGAATCCGGTCATCCAACTCC 59.513 52.381 0.00 0.00 0.00 3.85
861 1293 1.209504 GAATCCGGTCATCCAACTCCA 59.790 52.381 0.00 0.00 0.00 3.86
862 1294 1.511613 ATCCGGTCATCCAACTCCAT 58.488 50.000 0.00 0.00 0.00 3.41
864 1296 0.541392 CCGGTCATCCAACTCCATGA 59.459 55.000 0.00 0.00 0.00 3.07
909 1345 2.392662 TGAGATGATCACCTCACCTCC 58.607 52.381 16.29 0.00 43.17 4.30
918 1354 4.899239 CTCACCTCCATCGGCCGC 62.899 72.222 23.51 0.00 0.00 6.53
937 1373 1.460255 CCTTCCAGCCACCTTCCAA 59.540 57.895 0.00 0.00 0.00 3.53
940 1376 1.005215 CTTCCAGCCACCTTCCAATCT 59.995 52.381 0.00 0.00 0.00 2.40
941 1377 0.620556 TCCAGCCACCTTCCAATCTC 59.379 55.000 0.00 0.00 0.00 2.75
942 1378 0.329261 CCAGCCACCTTCCAATCTCA 59.671 55.000 0.00 0.00 0.00 3.27
943 1379 1.272092 CCAGCCACCTTCCAATCTCAA 60.272 52.381 0.00 0.00 0.00 3.02
945 1381 1.177401 GCCACCTTCCAATCTCAACC 58.823 55.000 0.00 0.00 0.00 3.77
946 1382 1.272147 GCCACCTTCCAATCTCAACCT 60.272 52.381 0.00 0.00 0.00 3.50
947 1383 2.440409 CCACCTTCCAATCTCAACCTG 58.560 52.381 0.00 0.00 0.00 4.00
948 1384 2.040278 CCACCTTCCAATCTCAACCTGA 59.960 50.000 0.00 0.00 0.00 3.86
949 1385 3.308688 CCACCTTCCAATCTCAACCTGAT 60.309 47.826 0.00 0.00 0.00 2.90
951 1387 4.397417 CACCTTCCAATCTCAACCTGATTC 59.603 45.833 0.00 0.00 32.47 2.52
952 1388 3.950395 CCTTCCAATCTCAACCTGATTCC 59.050 47.826 0.00 0.00 32.47 3.01
953 1389 4.568380 CCTTCCAATCTCAACCTGATTCCA 60.568 45.833 0.00 0.00 32.47 3.53
955 1391 5.197224 TCCAATCTCAACCTGATTCCAAT 57.803 39.130 0.00 0.00 32.47 3.16
956 1392 5.195940 TCCAATCTCAACCTGATTCCAATC 58.804 41.667 0.00 0.00 32.47 2.67
957 1393 4.340381 CCAATCTCAACCTGATTCCAATCC 59.660 45.833 0.00 0.00 34.50 3.01
958 1394 4.868172 ATCTCAACCTGATTCCAATCCA 57.132 40.909 0.00 0.00 34.50 3.41
959 1395 4.868172 TCTCAACCTGATTCCAATCCAT 57.132 40.909 0.00 0.00 34.50 3.41
960 1396 4.529897 TCTCAACCTGATTCCAATCCATG 58.470 43.478 0.00 0.00 34.50 3.66
961 1397 3.025978 TCAACCTGATTCCAATCCATGC 58.974 45.455 0.00 0.00 34.50 4.06
962 1398 3.028850 CAACCTGATTCCAATCCATGCT 58.971 45.455 0.00 0.00 34.50 3.79
963 1399 2.662866 ACCTGATTCCAATCCATGCTG 58.337 47.619 0.00 0.00 34.50 4.41
964 1400 2.024655 ACCTGATTCCAATCCATGCTGT 60.025 45.455 0.00 0.00 34.50 4.40
1032 1468 2.777692 TCCCCTCTTCTCTCTCTCTCTC 59.222 54.545 0.00 0.00 0.00 3.20
1033 1469 2.780010 CCCCTCTTCTCTCTCTCTCTCT 59.220 54.545 0.00 0.00 0.00 3.10
1034 1470 3.181450 CCCCTCTTCTCTCTCTCTCTCTC 60.181 56.522 0.00 0.00 0.00 3.20
1035 1471 3.713764 CCCTCTTCTCTCTCTCTCTCTCT 59.286 52.174 0.00 0.00 0.00 3.10
1072 1508 0.037790 ACTCTTCGCTGCTCTGTTCC 60.038 55.000 0.00 0.00 0.00 3.62
1206 1642 8.526147 CAGGTAATTGAAGAACCATCTTGATTT 58.474 33.333 0.00 0.00 45.91 2.17
1216 1652 5.269554 ACCATCTTGATTTGGGTTCCTTA 57.730 39.130 0.00 0.00 37.32 2.69
1245 1681 4.228567 GCTAGCTCCGGCCTGGAC 62.229 72.222 7.70 0.00 43.74 4.02
1264 1700 1.368731 GCGAGATCGAGCTGACGAG 60.369 63.158 8.50 0.00 45.22 4.18
1300 1736 1.463214 TGCAGGAAAGGGGTGAGGA 60.463 57.895 0.00 0.00 0.00 3.71
1476 1912 3.004734 CACCCACCAAAGCTTTTCTGTAG 59.995 47.826 9.53 5.23 0.00 2.74
1478 1914 4.082125 CCCACCAAAGCTTTTCTGTAGAT 58.918 43.478 9.53 0.00 0.00 1.98
1481 1917 6.173339 CCACCAAAGCTTTTCTGTAGATAGA 58.827 40.000 9.53 0.00 0.00 1.98
1484 1920 8.734386 CACCAAAGCTTTTCTGTAGATAGAAAT 58.266 33.333 9.53 0.00 43.84 2.17
1486 1922 8.950210 CCAAAGCTTTTCTGTAGATAGAAATGA 58.050 33.333 9.53 0.00 43.84 2.57
1493 1930 9.601217 TTTTCTGTAGATAGAAATGAAGGTAGC 57.399 33.333 2.75 0.00 43.84 3.58
1501 1938 8.584157 AGATAGAAATGAAGGTAGCACAGATAG 58.416 37.037 0.00 0.00 0.00 2.08
1516 1953 0.528684 GATAGTGACTGACAGCGGGC 60.529 60.000 1.25 0.00 0.00 6.13
1529 1966 4.484987 CGGGCCCCGCAATAATTA 57.515 55.556 18.66 0.00 41.17 1.40
1532 1969 1.532604 GGGCCCCGCAATAATTAGGC 61.533 60.000 12.23 3.19 39.73 3.93
1535 1972 1.247567 CCCCGCAATAATTAGGCCAG 58.752 55.000 5.01 0.09 0.00 4.85
1536 1973 0.598065 CCCGCAATAATTAGGCCAGC 59.402 55.000 5.01 0.00 0.00 4.85
1545 1982 0.679960 ATTAGGCCAGCGTCAAACCC 60.680 55.000 5.01 0.00 0.00 4.11
1553 1990 0.872388 AGCGTCAAACCCGTCAAATC 59.128 50.000 0.00 0.00 0.00 2.17
1562 1999 1.871039 ACCCGTCAAATCACTTCAACG 59.129 47.619 0.00 0.00 0.00 4.10
1622 2059 7.735500 TGGAAAATGTCTACGTATTTTTCTCG 58.264 34.615 20.43 2.15 36.81 4.04
1656 2492 5.770663 TGTCCCTATAGCTCACTGAGTTATC 59.229 44.000 16.31 5.50 37.31 1.75
1659 2504 5.335269 CCCTATAGCTCACTGAGTTATCGTG 60.335 48.000 16.31 9.67 37.31 4.35
1695 2540 1.300963 GGCCTTCTCTGCATCCACA 59.699 57.895 0.00 0.00 0.00 4.17
1775 2621 5.862924 ACGAAACCATGTCACTGAATTAG 57.137 39.130 0.00 0.00 0.00 1.73
1776 2622 5.547465 ACGAAACCATGTCACTGAATTAGA 58.453 37.500 0.00 0.00 0.00 2.10
1778 2624 6.313905 ACGAAACCATGTCACTGAATTAGATC 59.686 38.462 0.00 0.00 0.00 2.75
1779 2625 6.536582 CGAAACCATGTCACTGAATTAGATCT 59.463 38.462 0.00 0.00 0.00 2.75
1780 2626 7.254252 CGAAACCATGTCACTGAATTAGATCTC 60.254 40.741 0.00 0.00 0.00 2.75
1791 2650 7.816513 CACTGAATTAGATCTCACAGTTTCTCA 59.183 37.037 16.02 2.71 36.64 3.27
1792 2651 8.034215 ACTGAATTAGATCTCACAGTTTCTCAG 58.966 37.037 0.00 2.98 35.52 3.35
1793 2652 7.901029 TGAATTAGATCTCACAGTTTCTCAGT 58.099 34.615 0.00 0.00 0.00 3.41
1798 2657 4.224715 TCTCACAGTTTCTCAGTGTACG 57.775 45.455 0.00 0.00 36.87 3.67
1803 2662 4.854291 CACAGTTTCTCAGTGTACGATCTC 59.146 45.833 0.00 0.00 36.87 2.75
1810 2669 2.159747 TCAGTGTACGATCTCACGAACG 60.160 50.000 0.00 0.00 40.72 3.95
1831 2690 3.186001 CGATGCTCTGACCATTAATCTGC 59.814 47.826 0.00 0.00 0.00 4.26
1897 2960 1.260538 TGCTGGAGACGCTGGAGAAT 61.261 55.000 0.00 0.00 0.00 2.40
2012 3081 2.271800 CCATCAGAGCCAACGTAAGAC 58.728 52.381 0.00 0.00 43.62 3.01
2013 3082 2.353704 CCATCAGAGCCAACGTAAGACA 60.354 50.000 0.00 0.00 43.62 3.41
2014 3083 3.525537 CATCAGAGCCAACGTAAGACAT 58.474 45.455 0.00 0.00 43.62 3.06
2015 3084 3.232213 TCAGAGCCAACGTAAGACATC 57.768 47.619 0.00 0.00 43.62 3.06
2016 3085 2.826128 TCAGAGCCAACGTAAGACATCT 59.174 45.455 0.00 0.00 43.62 2.90
2017 3086 3.119459 TCAGAGCCAACGTAAGACATCTC 60.119 47.826 0.00 0.00 43.62 2.75
2018 3087 2.166664 AGAGCCAACGTAAGACATCTCC 59.833 50.000 0.00 0.00 43.62 3.71
2019 3088 2.166664 GAGCCAACGTAAGACATCTCCT 59.833 50.000 0.00 0.00 43.62 3.69
2020 3089 2.166664 AGCCAACGTAAGACATCTCCTC 59.833 50.000 0.00 0.00 43.62 3.71
2021 3090 2.798680 CCAACGTAAGACATCTCCTCG 58.201 52.381 0.00 0.00 43.62 4.63
2022 3091 2.422479 CCAACGTAAGACATCTCCTCGA 59.578 50.000 0.00 0.00 43.62 4.04
2023 3092 3.066900 CCAACGTAAGACATCTCCTCGAT 59.933 47.826 0.00 0.00 43.62 3.59
2049 3119 1.335324 GCATGTGTTCTTGTCTGCACC 60.335 52.381 0.00 0.00 0.00 5.01
2697 5551 4.508128 CTGGTCACGGCCGCGTAT 62.508 66.667 28.58 1.31 0.00 3.06
2698 5552 4.071875 TGGTCACGGCCGCGTATT 62.072 61.111 28.58 0.81 0.00 1.89
2748 5602 0.173481 CGGCGATCAAGTTCCTCAGA 59.827 55.000 0.00 0.00 0.00 3.27
2754 5608 4.619394 GCGATCAAGTTCCTCAGAGAGAAA 60.619 45.833 0.00 0.00 0.00 2.52
2763 5617 4.420206 TCCTCAGAGAGAAATTCCTGTCA 58.580 43.478 0.00 0.00 0.00 3.58
2766 5620 4.420206 TCAGAGAGAAATTCCTGTCAGGA 58.580 43.478 18.15 18.15 44.10 3.86
2811 5665 3.807538 GCCGACTACGACTGCGGA 61.808 66.667 13.74 0.00 46.29 5.54
2840 5701 7.609097 TGTAGCTCTATCATTCCTTCTTCAT 57.391 36.000 0.00 0.00 0.00 2.57
2853 5714 3.120060 CCTTCTTCATGGCAAAACGAGAG 60.120 47.826 0.00 0.00 0.00 3.20
2919 5780 4.033932 CGATTTGATGCCTGTATTTCGACA 59.966 41.667 0.00 0.00 0.00 4.35
2923 5784 5.895636 TGATGCCTGTATTTCGACATTTT 57.104 34.783 0.00 0.00 0.00 1.82
2989 7208 5.697067 AGTCTAGATGATACCCTCGTCTTT 58.303 41.667 0.00 0.00 46.11 2.52
2990 7209 5.766174 AGTCTAGATGATACCCTCGTCTTTC 59.234 44.000 0.00 0.00 46.11 2.62
2991 7210 5.048573 GTCTAGATGATACCCTCGTCTTTCC 60.049 48.000 0.00 0.00 46.11 3.13
2992 7211 3.917300 AGATGATACCCTCGTCTTTCCT 58.083 45.455 0.00 0.00 46.11 3.36
3009 7245 6.351327 CTTTCCTGAAAAGAACGCCTATAG 57.649 41.667 0.00 0.00 46.18 1.31
3014 7250 4.827692 TGAAAAGAACGCCTATAGCTCAA 58.172 39.130 0.00 0.00 40.39 3.02
3066 9556 5.526111 TCTCTGACTTTTAAGTTTTGGGTCG 59.474 40.000 0.00 0.00 39.88 4.79
3097 10074 0.894835 TGACCGTAGATTGCTGCTCA 59.105 50.000 0.00 0.00 0.00 4.26
3105 10082 2.443416 AGATTGCTGCTCAAAGATGCA 58.557 42.857 0.00 0.00 38.34 3.96
3107 10084 2.933495 TTGCTGCTCAAAGATGCATC 57.067 45.000 19.37 19.37 38.59 3.91
3157 10137 3.028130 TGTCATGTATTGGGCTAGACGA 58.972 45.455 0.00 0.00 0.00 4.20
3209 10190 2.071778 TTTCTTGTTGGGCTGAAGCT 57.928 45.000 1.74 0.00 41.70 3.74
3248 10229 0.882927 AGGCTGTTTGCGAGCGTTTA 60.883 50.000 0.00 0.00 44.05 2.01
3261 10244 4.956184 GCGAGCGTTTATACATCTGTTTTC 59.044 41.667 0.00 0.00 0.00 2.29
3385 10368 6.573664 TGCATTATTATGTGCCACTATTCC 57.426 37.500 0.00 0.00 40.56 3.01
3409 10392 9.936759 TCCTTTGTTCTTAGATTTTGTTTTTGT 57.063 25.926 0.00 0.00 0.00 2.83
3490 10476 7.946918 TCTATATTTCACGCAAATTTTGTCG 57.053 32.000 18.02 18.02 36.09 4.35
3619 10614 9.567776 TCCAGATTTCTGTTTCTATGTGTTTTA 57.432 29.630 6.81 0.00 42.27 1.52
3620 10615 9.831737 CCAGATTTCTGTTTCTATGTGTTTTAG 57.168 33.333 6.81 0.00 42.27 1.85
3825 10935 6.715264 TCATTCCTTCTTTGAAAACCTACTCC 59.285 38.462 0.00 0.00 0.00 3.85
3828 10938 5.133830 TCCTTCTTTGAAAACCTACTCCCTT 59.866 40.000 0.00 0.00 0.00 3.95
3883 11005 9.517609 ACAACGCTCTTATATTAGTTTACAGAG 57.482 33.333 0.00 0.00 0.00 3.35
3887 11009 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 3.838468 CGTCTCAAACGTCCGGAC 58.162 61.111 25.28 25.28 46.42 4.79
24 25 0.591659 GCCTCAAACCCGTCTCAAAC 59.408 55.000 0.00 0.00 0.00 2.93
25 26 0.536460 GGCCTCAAACCCGTCTCAAA 60.536 55.000 0.00 0.00 0.00 2.69
26 27 1.072505 GGCCTCAAACCCGTCTCAA 59.927 57.895 0.00 0.00 0.00 3.02
27 28 2.747686 GGCCTCAAACCCGTCTCA 59.252 61.111 0.00 0.00 0.00 3.27
28 29 2.434359 CGGCCTCAAACCCGTCTC 60.434 66.667 0.00 0.00 39.67 3.36
29 30 4.699522 GCGGCCTCAAACCCGTCT 62.700 66.667 0.00 0.00 45.98 4.18
30 31 4.699522 AGCGGCCTCAAACCCGTC 62.700 66.667 0.00 0.00 45.98 4.79
32 33 4.697756 TCAGCGGCCTCAAACCCG 62.698 66.667 0.00 0.00 46.94 5.28
33 34 3.056328 GTCAGCGGCCTCAAACCC 61.056 66.667 0.00 0.00 0.00 4.11
34 35 2.032681 AGTCAGCGGCCTCAAACC 59.967 61.111 0.00 0.00 0.00 3.27
35 36 0.320421 TACAGTCAGCGGCCTCAAAC 60.320 55.000 0.00 0.00 0.00 2.93
36 37 0.037326 CTACAGTCAGCGGCCTCAAA 60.037 55.000 0.00 0.00 0.00 2.69
37 38 0.898326 TCTACAGTCAGCGGCCTCAA 60.898 55.000 0.00 0.00 0.00 3.02
38 39 0.684479 ATCTACAGTCAGCGGCCTCA 60.684 55.000 0.00 0.00 0.00 3.86
39 40 0.249238 CATCTACAGTCAGCGGCCTC 60.249 60.000 0.00 0.00 0.00 4.70
40 41 0.684479 TCATCTACAGTCAGCGGCCT 60.684 55.000 0.00 0.00 0.00 5.19
41 42 0.390860 ATCATCTACAGTCAGCGGCC 59.609 55.000 0.00 0.00 0.00 6.13
42 43 1.339610 AGATCATCTACAGTCAGCGGC 59.660 52.381 0.00 0.00 0.00 6.53
43 44 2.620585 TCAGATCATCTACAGTCAGCGG 59.379 50.000 0.00 0.00 0.00 5.52
44 45 3.978718 TCAGATCATCTACAGTCAGCG 57.021 47.619 0.00 0.00 0.00 5.18
45 46 4.989797 CCAATCAGATCATCTACAGTCAGC 59.010 45.833 0.00 0.00 0.00 4.26
46 47 6.402456 TCCAATCAGATCATCTACAGTCAG 57.598 41.667 0.00 0.00 0.00 3.51
47 48 5.221402 GCTCCAATCAGATCATCTACAGTCA 60.221 44.000 0.00 0.00 0.00 3.41
48 49 5.229423 GCTCCAATCAGATCATCTACAGTC 58.771 45.833 0.00 0.00 0.00 3.51
49 50 4.040217 GGCTCCAATCAGATCATCTACAGT 59.960 45.833 0.00 0.00 0.00 3.55
50 51 4.283978 AGGCTCCAATCAGATCATCTACAG 59.716 45.833 0.00 0.00 0.00 2.74
51 52 4.229639 AGGCTCCAATCAGATCATCTACA 58.770 43.478 0.00 0.00 0.00 2.74
52 53 4.617995 CGAGGCTCCAATCAGATCATCTAC 60.618 50.000 9.32 0.00 0.00 2.59
53 54 3.509184 CGAGGCTCCAATCAGATCATCTA 59.491 47.826 9.32 0.00 0.00 1.98
54 55 2.299582 CGAGGCTCCAATCAGATCATCT 59.700 50.000 9.32 0.00 0.00 2.90
55 56 2.036992 ACGAGGCTCCAATCAGATCATC 59.963 50.000 9.32 0.00 0.00 2.92
56 57 2.045524 ACGAGGCTCCAATCAGATCAT 58.954 47.619 9.32 0.00 0.00 2.45
57 58 1.137675 CACGAGGCTCCAATCAGATCA 59.862 52.381 9.32 0.00 0.00 2.92
58 59 1.410517 TCACGAGGCTCCAATCAGATC 59.589 52.381 9.32 0.00 0.00 2.75
59 60 1.489481 TCACGAGGCTCCAATCAGAT 58.511 50.000 9.32 0.00 0.00 2.90
60 61 1.489481 ATCACGAGGCTCCAATCAGA 58.511 50.000 9.32 0.00 0.00 3.27
61 62 1.938577 CAATCACGAGGCTCCAATCAG 59.061 52.381 9.32 0.00 0.00 2.90
62 63 1.407299 CCAATCACGAGGCTCCAATCA 60.407 52.381 9.32 0.00 0.00 2.57
63 64 1.303309 CCAATCACGAGGCTCCAATC 58.697 55.000 9.32 0.00 0.00 2.67
64 65 3.483954 CCAATCACGAGGCTCCAAT 57.516 52.632 9.32 0.00 0.00 3.16
71 72 1.227674 GCCTAGGCCAATCACGAGG 60.228 63.158 24.19 0.38 34.56 4.63
72 73 4.445699 GCCTAGGCCAATCACGAG 57.554 61.111 24.19 0.00 34.56 4.18
82 83 4.115199 CACCAGGGTGGCCTAGGC 62.115 72.222 26.55 26.55 42.67 3.93
91 92 1.655114 AAGAGGCCAAACACCAGGGT 61.655 55.000 5.01 0.00 0.00 4.34
92 93 1.153756 AAGAGGCCAAACACCAGGG 59.846 57.895 5.01 0.00 0.00 4.45
93 94 1.809567 GCAAGAGGCCAAACACCAGG 61.810 60.000 5.01 0.00 36.11 4.45
94 95 1.108727 TGCAAGAGGCCAAACACCAG 61.109 55.000 5.01 0.00 43.89 4.00
95 96 0.685785 TTGCAAGAGGCCAAACACCA 60.686 50.000 5.01 0.00 43.89 4.17
96 97 0.463620 TTTGCAAGAGGCCAAACACC 59.536 50.000 5.01 0.00 43.89 4.16
97 98 1.856802 CTTTGCAAGAGGCCAAACAC 58.143 50.000 5.01 0.00 43.89 3.32
98 99 0.104671 GCTTTGCAAGAGGCCAAACA 59.895 50.000 5.01 0.00 43.89 2.83
99 100 0.390492 AGCTTTGCAAGAGGCCAAAC 59.610 50.000 5.01 0.00 43.89 2.93
100 101 0.390124 CAGCTTTGCAAGAGGCCAAA 59.610 50.000 5.01 0.00 43.89 3.28
101 102 0.756442 ACAGCTTTGCAAGAGGCCAA 60.756 50.000 5.01 0.00 43.89 4.52
102 103 1.152694 ACAGCTTTGCAAGAGGCCA 60.153 52.632 5.01 0.00 43.89 5.36
103 104 1.174712 TCACAGCTTTGCAAGAGGCC 61.175 55.000 14.46 0.00 43.89 5.19
104 105 0.886563 ATCACAGCTTTGCAAGAGGC 59.113 50.000 0.00 6.14 45.13 4.70
105 106 3.655276 AAATCACAGCTTTGCAAGAGG 57.345 42.857 0.00 0.00 0.00 3.69
139 140 9.620660 CCAAAAGTTTAGTTATAAAACGAGCAT 57.379 29.630 0.00 0.00 40.86 3.79
140 141 7.592164 GCCAAAAGTTTAGTTATAAAACGAGCA 59.408 33.333 0.00 0.00 40.86 4.26
141 142 7.806487 AGCCAAAAGTTTAGTTATAAAACGAGC 59.194 33.333 0.00 0.00 40.86 5.03
142 143 9.326339 GAGCCAAAAGTTTAGTTATAAAACGAG 57.674 33.333 0.00 0.00 40.86 4.18
143 144 9.059260 AGAGCCAAAAGTTTAGTTATAAAACGA 57.941 29.630 0.00 0.00 40.86 3.85
144 145 9.113876 CAGAGCCAAAAGTTTAGTTATAAAACG 57.886 33.333 0.00 0.00 40.86 3.60
145 146 8.912658 GCAGAGCCAAAAGTTTAGTTATAAAAC 58.087 33.333 0.00 0.00 37.14 2.43
146 147 8.856103 AGCAGAGCCAAAAGTTTAGTTATAAAA 58.144 29.630 0.00 0.00 32.76 1.52
147 148 8.404107 AGCAGAGCCAAAAGTTTAGTTATAAA 57.596 30.769 0.00 0.00 0.00 1.40
148 149 7.996098 AGCAGAGCCAAAAGTTTAGTTATAA 57.004 32.000 0.00 0.00 0.00 0.98
149 150 7.996098 AAGCAGAGCCAAAAGTTTAGTTATA 57.004 32.000 0.00 0.00 0.00 0.98
150 151 6.901081 AAGCAGAGCCAAAAGTTTAGTTAT 57.099 33.333 0.00 0.00 0.00 1.89
151 152 6.709018 AAAGCAGAGCCAAAAGTTTAGTTA 57.291 33.333 0.00 0.00 0.00 2.24
152 153 5.598416 AAAGCAGAGCCAAAAGTTTAGTT 57.402 34.783 0.00 0.00 0.00 2.24
153 154 5.598416 AAAAGCAGAGCCAAAAGTTTAGT 57.402 34.783 0.00 0.00 0.00 2.24
173 174 4.585955 TTAAACATACTGCCGCCAAAAA 57.414 36.364 0.00 0.00 0.00 1.94
174 175 4.585955 TTTAAACATACTGCCGCCAAAA 57.414 36.364 0.00 0.00 0.00 2.44
175 176 4.585955 TTTTAAACATACTGCCGCCAAA 57.414 36.364 0.00 0.00 0.00 3.28
176 177 4.585955 TTTTTAAACATACTGCCGCCAA 57.414 36.364 0.00 0.00 0.00 4.52
195 196 4.376340 CACCTGTTGTGCTCTTCTTTTT 57.624 40.909 0.00 0.00 38.34 1.94
207 208 4.265056 GGCCGGGACACCTGTTGT 62.265 66.667 2.18 0.00 43.10 3.32
208 209 2.119484 TTAGGCCGGGACACCTGTTG 62.119 60.000 0.92 0.00 35.18 3.33
209 210 1.838073 CTTAGGCCGGGACACCTGTT 61.838 60.000 0.92 0.00 35.18 3.16
210 211 2.203877 TTAGGCCGGGACACCTGT 60.204 61.111 0.92 0.00 35.18 4.00
211 212 1.961180 CTCTTAGGCCGGGACACCTG 61.961 65.000 0.92 0.00 35.18 4.00
212 213 1.686110 CTCTTAGGCCGGGACACCT 60.686 63.158 0.92 3.08 38.22 4.00
213 214 2.732619 CCTCTTAGGCCGGGACACC 61.733 68.421 0.92 0.00 0.00 4.16
214 215 1.262640 TTCCTCTTAGGCCGGGACAC 61.263 60.000 0.92 0.00 34.61 3.67
215 216 1.079621 TTCCTCTTAGGCCGGGACA 59.920 57.895 0.92 0.00 34.61 4.02
216 217 1.521141 GTTCCTCTTAGGCCGGGAC 59.479 63.158 2.18 0.00 34.61 4.46
217 218 2.056223 CGTTCCTCTTAGGCCGGGA 61.056 63.158 2.18 0.00 34.61 5.14
218 219 2.499685 CGTTCCTCTTAGGCCGGG 59.500 66.667 2.18 0.00 34.61 5.73
219 220 2.499685 CCGTTCCTCTTAGGCCGG 59.500 66.667 0.00 0.00 41.06 6.13
220 221 2.202892 GCCGTTCCTCTTAGGCCG 60.203 66.667 0.00 0.00 43.54 6.13
223 224 0.815615 GGCATGCCGTTCCTCTTAGG 60.816 60.000 23.48 0.00 36.46 2.69
224 225 0.179000 AGGCATGCCGTTCCTCTTAG 59.821 55.000 30.50 0.00 41.95 2.18
225 226 0.618458 AAGGCATGCCGTTCCTCTTA 59.382 50.000 30.50 0.00 41.95 2.10
226 227 0.251341 AAAGGCATGCCGTTCCTCTT 60.251 50.000 29.28 15.03 41.95 2.85
227 228 0.678048 GAAAGGCATGCCGTTCCTCT 60.678 55.000 39.65 21.19 44.84 3.69
228 229 1.803289 GAAAGGCATGCCGTTCCTC 59.197 57.895 39.65 25.11 44.84 3.71
229 230 2.040544 CGAAAGGCATGCCGTTCCT 61.041 57.895 41.18 23.57 46.80 3.36
230 231 1.376609 ATCGAAAGGCATGCCGTTCC 61.377 55.000 41.18 29.45 46.80 3.62
231 232 0.028110 GATCGAAAGGCATGCCGTTC 59.972 55.000 39.60 39.60 46.30 3.95
232 233 1.705337 CGATCGAAAGGCATGCCGTT 61.705 55.000 33.87 33.87 40.35 4.44
233 234 2.173669 CGATCGAAAGGCATGCCGT 61.174 57.895 30.50 25.65 41.95 5.68
234 235 2.628106 CGATCGAAAGGCATGCCG 59.372 61.111 30.50 18.67 41.95 5.69
235 236 3.025619 CCGATCGAAAGGCATGCC 58.974 61.111 30.12 30.12 0.00 4.40
241 242 2.513897 GGGTGGCCGATCGAAAGG 60.514 66.667 18.66 0.00 0.00 3.11
242 243 1.078426 AAGGGTGGCCGATCGAAAG 60.078 57.895 18.66 0.27 0.00 2.62
243 244 1.376683 CAAGGGTGGCCGATCGAAA 60.377 57.895 18.66 0.00 0.00 3.46
244 245 2.267642 CAAGGGTGGCCGATCGAA 59.732 61.111 18.66 0.00 0.00 3.71
245 246 4.467084 GCAAGGGTGGCCGATCGA 62.467 66.667 18.66 0.00 0.00 3.59
253 254 2.681064 CCACATGGGCAAGGGTGG 60.681 66.667 0.00 1.50 44.17 4.61
262 263 0.887933 GTTGTTGGTAGCCACATGGG 59.112 55.000 0.00 0.00 40.85 4.00
263 264 1.614996 TGTTGTTGGTAGCCACATGG 58.385 50.000 0.00 0.00 30.78 3.66
264 265 3.552684 CCTTTGTTGTTGGTAGCCACATG 60.553 47.826 0.00 0.00 30.78 3.21
265 266 2.627699 CCTTTGTTGTTGGTAGCCACAT 59.372 45.455 0.00 0.00 30.78 3.21
266 267 2.028130 CCTTTGTTGTTGGTAGCCACA 58.972 47.619 0.00 0.00 30.78 4.17
267 268 1.339929 CCCTTTGTTGTTGGTAGCCAC 59.660 52.381 0.00 0.00 30.78 5.01
268 269 1.698506 CCCTTTGTTGTTGGTAGCCA 58.301 50.000 0.00 0.00 0.00 4.75
269 270 0.966179 CCCCTTTGTTGTTGGTAGCC 59.034 55.000 0.00 0.00 0.00 3.93
270 271 1.886542 CTCCCCTTTGTTGTTGGTAGC 59.113 52.381 0.00 0.00 0.00 3.58
271 272 2.884639 CACTCCCCTTTGTTGTTGGTAG 59.115 50.000 0.00 0.00 0.00 3.18
272 273 2.938838 CACTCCCCTTTGTTGTTGGTA 58.061 47.619 0.00 0.00 0.00 3.25
273 274 1.775385 CACTCCCCTTTGTTGTTGGT 58.225 50.000 0.00 0.00 0.00 3.67
274 275 0.389025 GCACTCCCCTTTGTTGTTGG 59.611 55.000 0.00 0.00 0.00 3.77
275 276 0.030638 CGCACTCCCCTTTGTTGTTG 59.969 55.000 0.00 0.00 0.00 3.33
276 277 1.734388 GCGCACTCCCCTTTGTTGTT 61.734 55.000 0.30 0.00 0.00 2.83
277 278 2.193536 GCGCACTCCCCTTTGTTGT 61.194 57.895 0.30 0.00 0.00 3.32
278 279 1.733402 TTGCGCACTCCCCTTTGTTG 61.733 55.000 11.12 0.00 0.00 3.33
279 280 0.827507 ATTGCGCACTCCCCTTTGTT 60.828 50.000 11.12 0.00 0.00 2.83
280 281 0.037590 TATTGCGCACTCCCCTTTGT 59.962 50.000 11.12 0.00 0.00 2.83
281 282 1.334869 GATATTGCGCACTCCCCTTTG 59.665 52.381 11.12 0.00 0.00 2.77
282 283 1.680338 GATATTGCGCACTCCCCTTT 58.320 50.000 11.12 0.00 0.00 3.11
283 284 0.179018 GGATATTGCGCACTCCCCTT 60.179 55.000 11.12 0.00 0.00 3.95
284 285 1.056700 AGGATATTGCGCACTCCCCT 61.057 55.000 22.65 17.91 0.00 4.79
285 286 0.603975 GAGGATATTGCGCACTCCCC 60.604 60.000 22.65 16.31 0.00 4.81
286 287 0.394565 AGAGGATATTGCGCACTCCC 59.605 55.000 22.65 16.60 0.00 4.30
287 288 1.342819 AGAGAGGATATTGCGCACTCC 59.657 52.381 11.12 17.12 0.00 3.85
288 289 2.223923 ACAGAGAGGATATTGCGCACTC 60.224 50.000 11.12 13.70 0.00 3.51
289 290 1.759445 ACAGAGAGGATATTGCGCACT 59.241 47.619 11.12 7.82 0.00 4.40
290 291 2.231215 ACAGAGAGGATATTGCGCAC 57.769 50.000 11.12 0.00 0.00 5.34
291 292 2.035961 GGTACAGAGAGGATATTGCGCA 59.964 50.000 5.66 5.66 0.00 6.09
292 293 2.297597 AGGTACAGAGAGGATATTGCGC 59.702 50.000 0.00 0.00 0.00 6.09
293 294 5.009710 TGTTAGGTACAGAGAGGATATTGCG 59.990 44.000 0.00 0.00 31.68 4.85
294 295 6.406692 TGTTAGGTACAGAGAGGATATTGC 57.593 41.667 0.00 0.00 31.68 3.56
295 296 8.258007 TGTTTGTTAGGTACAGAGAGGATATTG 58.742 37.037 0.00 0.00 38.19 1.90
296 297 8.375493 TGTTTGTTAGGTACAGAGAGGATATT 57.625 34.615 0.00 0.00 38.19 1.28
297 298 7.973048 TGTTTGTTAGGTACAGAGAGGATAT 57.027 36.000 0.00 0.00 38.19 1.63
298 299 7.786046 TTGTTTGTTAGGTACAGAGAGGATA 57.214 36.000 0.00 0.00 38.19 2.59
299 300 6.681729 TTGTTTGTTAGGTACAGAGAGGAT 57.318 37.500 0.00 0.00 38.19 3.24
300 301 6.488769 TTTGTTTGTTAGGTACAGAGAGGA 57.511 37.500 0.00 0.00 38.19 3.71
301 302 7.063074 CGTATTTGTTTGTTAGGTACAGAGAGG 59.937 40.741 0.00 0.00 38.19 3.69
302 303 7.597743 ACGTATTTGTTTGTTAGGTACAGAGAG 59.402 37.037 0.00 0.00 38.19 3.20
303 304 7.436118 ACGTATTTGTTTGTTAGGTACAGAGA 58.564 34.615 0.00 0.00 38.19 3.10
304 305 7.647907 ACGTATTTGTTTGTTAGGTACAGAG 57.352 36.000 0.00 0.00 38.19 3.35
305 306 7.814107 CCTACGTATTTGTTTGTTAGGTACAGA 59.186 37.037 0.00 0.00 38.19 3.41
306 307 7.814107 TCCTACGTATTTGTTTGTTAGGTACAG 59.186 37.037 0.00 0.00 38.19 2.74
307 308 7.665690 TCCTACGTATTTGTTTGTTAGGTACA 58.334 34.615 0.00 0.00 34.12 2.90
308 309 8.707938 ATCCTACGTATTTGTTTGTTAGGTAC 57.292 34.615 0.00 0.00 0.00 3.34
310 311 9.895138 ATTATCCTACGTATTTGTTTGTTAGGT 57.105 29.630 0.00 0.00 0.00 3.08
325 326 9.498176 AACAAGAAAGTTAACATTATCCTACGT 57.502 29.630 8.61 0.00 0.00 3.57
329 330 8.957466 GCCTAACAAGAAAGTTAACATTATCCT 58.043 33.333 8.61 0.00 33.89 3.24
330 331 8.736244 TGCCTAACAAGAAAGTTAACATTATCC 58.264 33.333 8.61 0.00 33.89 2.59
334 335 9.830975 ATTTTGCCTAACAAGAAAGTTAACATT 57.169 25.926 8.61 1.34 40.06 2.71
336 337 9.959749 CTATTTTGCCTAACAAGAAAGTTAACA 57.040 29.630 8.61 0.00 40.06 2.41
337 338 9.406828 CCTATTTTGCCTAACAAGAAAGTTAAC 57.593 33.333 0.00 0.00 40.06 2.01
338 339 9.357161 TCCTATTTTGCCTAACAAGAAAGTTAA 57.643 29.630 0.00 0.00 40.06 2.01
339 340 8.927675 TCCTATTTTGCCTAACAAGAAAGTTA 57.072 30.769 0.00 0.00 40.06 2.24
340 341 7.833285 TCCTATTTTGCCTAACAAGAAAGTT 57.167 32.000 0.00 0.00 40.06 2.66
341 342 9.528489 TTATCCTATTTTGCCTAACAAGAAAGT 57.472 29.630 0.00 0.00 40.06 2.66
344 345 9.474313 ACATTATCCTATTTTGCCTAACAAGAA 57.526 29.630 0.00 0.00 40.06 2.52
345 346 9.474313 AACATTATCCTATTTTGCCTAACAAGA 57.526 29.630 0.00 0.00 40.06 3.02
348 349 8.846211 GCTAACATTATCCTATTTTGCCTAACA 58.154 33.333 0.00 0.00 0.00 2.41
349 350 9.067986 AGCTAACATTATCCTATTTTGCCTAAC 57.932 33.333 0.00 0.00 0.00 2.34
350 351 9.066892 CAGCTAACATTATCCTATTTTGCCTAA 57.933 33.333 0.00 0.00 0.00 2.69
351 352 7.174946 GCAGCTAACATTATCCTATTTTGCCTA 59.825 37.037 0.00 0.00 0.00 3.93
352 353 6.015940 GCAGCTAACATTATCCTATTTTGCCT 60.016 38.462 0.00 0.00 0.00 4.75
353 354 6.152379 GCAGCTAACATTATCCTATTTTGCC 58.848 40.000 0.00 0.00 0.00 4.52
354 355 6.738114 TGCAGCTAACATTATCCTATTTTGC 58.262 36.000 0.00 0.00 0.00 3.68
355 356 9.403110 GATTGCAGCTAACATTATCCTATTTTG 57.597 33.333 0.00 0.00 0.00 2.44
356 357 8.292448 CGATTGCAGCTAACATTATCCTATTTT 58.708 33.333 0.00 0.00 0.00 1.82
357 358 7.445402 ACGATTGCAGCTAACATTATCCTATTT 59.555 33.333 0.00 0.00 0.00 1.40
358 359 6.936900 ACGATTGCAGCTAACATTATCCTATT 59.063 34.615 0.00 0.00 0.00 1.73
359 360 6.467677 ACGATTGCAGCTAACATTATCCTAT 58.532 36.000 0.00 0.00 0.00 2.57
363 364 5.207768 CCAACGATTGCAGCTAACATTATC 58.792 41.667 0.00 0.00 0.00 1.75
373 374 2.480555 CCGACCAACGATTGCAGC 59.519 61.111 0.00 0.00 45.77 5.25
377 378 1.361668 CTGGAGCCGACCAACGATTG 61.362 60.000 0.00 0.00 45.77 2.67
382 383 2.198304 AATCCCTGGAGCCGACCAAC 62.198 60.000 0.00 0.00 39.59 3.77
385 386 0.748367 GAAAATCCCTGGAGCCGACC 60.748 60.000 0.00 0.00 0.00 4.79
397 399 6.382608 GGCTACTGAAGAAAACTGAAAATCC 58.617 40.000 0.00 0.00 0.00 3.01
398 400 6.080406 CGGCTACTGAAGAAAACTGAAAATC 58.920 40.000 0.00 0.00 0.00 2.17
404 406 1.464997 GGCGGCTACTGAAGAAAACTG 59.535 52.381 0.00 0.00 0.00 3.16
409 411 0.532573 CAGAGGCGGCTACTGAAGAA 59.467 55.000 24.29 0.00 34.07 2.52
449 451 2.376518 AGATGGTTTCCTTCAGGCTTCA 59.623 45.455 0.00 0.00 31.13 3.02
450 452 3.078891 AGATGGTTTCCTTCAGGCTTC 57.921 47.619 0.00 0.00 31.13 3.86
451 453 3.054065 CCTAGATGGTTTCCTTCAGGCTT 60.054 47.826 0.00 0.00 31.13 4.35
452 454 2.507471 CCTAGATGGTTTCCTTCAGGCT 59.493 50.000 0.00 0.00 31.13 4.58
453 455 2.924421 CCTAGATGGTTTCCTTCAGGC 58.076 52.381 0.00 0.00 31.13 4.85
454 456 2.239654 TGCCTAGATGGTTTCCTTCAGG 59.760 50.000 0.00 8.92 38.35 3.86
455 457 3.054802 ACTGCCTAGATGGTTTCCTTCAG 60.055 47.826 0.00 0.00 38.35 3.02
456 458 2.912956 ACTGCCTAGATGGTTTCCTTCA 59.087 45.455 0.00 0.00 38.35 3.02
485 487 2.366916 CCTTACAGATCGATGGAGCCTT 59.633 50.000 0.54 0.00 0.00 4.35
488 490 2.546795 CCACCTTACAGATCGATGGAGC 60.547 54.545 0.54 0.00 0.00 4.70
489 491 2.959030 TCCACCTTACAGATCGATGGAG 59.041 50.000 0.54 0.00 0.00 3.86
493 495 4.023980 TCTTGTCCACCTTACAGATCGAT 58.976 43.478 0.00 0.00 0.00 3.59
497 499 5.485353 TCTGAATCTTGTCCACCTTACAGAT 59.515 40.000 0.00 0.00 0.00 2.90
500 502 5.338381 GGATCTGAATCTTGTCCACCTTACA 60.338 44.000 0.00 0.00 32.12 2.41
506 508 4.478206 TCTGGATCTGAATCTTGTCCAC 57.522 45.455 0.00 0.00 35.29 4.02
507 509 4.286808 TGTTCTGGATCTGAATCTTGTCCA 59.713 41.667 0.00 0.00 37.41 4.02
508 510 4.836825 TGTTCTGGATCTGAATCTTGTCC 58.163 43.478 0.00 0.00 32.12 4.02
509 511 5.220815 GCATGTTCTGGATCTGAATCTTGTC 60.221 44.000 0.00 0.00 32.12 3.18
510 512 4.639310 GCATGTTCTGGATCTGAATCTTGT 59.361 41.667 0.00 0.00 32.12 3.16
512 514 4.639310 GTGCATGTTCTGGATCTGAATCTT 59.361 41.667 0.00 0.00 32.12 2.40
514 516 4.197750 AGTGCATGTTCTGGATCTGAATC 58.802 43.478 0.00 0.00 0.00 2.52
515 517 4.232188 AGTGCATGTTCTGGATCTGAAT 57.768 40.909 0.00 0.00 0.00 2.57
516 518 3.708403 AGTGCATGTTCTGGATCTGAA 57.292 42.857 0.00 0.00 0.00 3.02
517 519 3.771479 AGTAGTGCATGTTCTGGATCTGA 59.229 43.478 0.00 0.00 0.00 3.27
519 521 3.118482 CCAGTAGTGCATGTTCTGGATCT 60.118 47.826 18.68 0.00 45.76 2.75
520 522 3.201290 CCAGTAGTGCATGTTCTGGATC 58.799 50.000 18.68 0.00 45.76 3.36
522 524 1.339055 GCCAGTAGTGCATGTTCTGGA 60.339 52.381 24.09 0.00 45.76 3.86
523 525 1.089920 GCCAGTAGTGCATGTTCTGG 58.910 55.000 18.96 18.96 45.68 3.86
524 526 1.089920 GGCCAGTAGTGCATGTTCTG 58.910 55.000 0.00 0.00 0.00 3.02
525 527 0.987294 AGGCCAGTAGTGCATGTTCT 59.013 50.000 5.01 0.00 0.00 3.01
526 528 1.373570 GAGGCCAGTAGTGCATGTTC 58.626 55.000 5.01 0.00 0.00 3.18
527 529 0.035056 GGAGGCCAGTAGTGCATGTT 60.035 55.000 5.01 0.00 0.00 2.71
529 531 0.035152 TTGGAGGCCAGTAGTGCATG 60.035 55.000 5.01 0.00 33.81 4.06
531 533 0.476338 TTTTGGAGGCCAGTAGTGCA 59.524 50.000 5.01 0.00 33.81 4.57
532 534 0.881796 GTTTTGGAGGCCAGTAGTGC 59.118 55.000 5.01 0.00 33.81 4.40
533 535 2.154462 CAGTTTTGGAGGCCAGTAGTG 58.846 52.381 5.01 0.00 33.81 2.74
534 536 2.054799 TCAGTTTTGGAGGCCAGTAGT 58.945 47.619 5.01 0.00 33.81 2.73
537 539 2.242043 CAATCAGTTTTGGAGGCCAGT 58.758 47.619 5.01 0.00 33.81 4.00
538 540 1.067354 GCAATCAGTTTTGGAGGCCAG 60.067 52.381 5.01 0.00 33.81 4.85
541 543 3.696051 TCATAGCAATCAGTTTTGGAGGC 59.304 43.478 0.00 0.00 0.00 4.70
542 544 4.096984 GGTCATAGCAATCAGTTTTGGAGG 59.903 45.833 0.00 0.00 0.00 4.30
546 946 6.127814 ACTGATGGTCATAGCAATCAGTTTTG 60.128 38.462 10.54 0.00 39.25 2.44
547 947 5.948162 ACTGATGGTCATAGCAATCAGTTTT 59.052 36.000 10.54 0.00 39.25 2.43
548 948 5.503927 ACTGATGGTCATAGCAATCAGTTT 58.496 37.500 10.54 0.00 39.25 2.66
554 954 4.337555 GCTGAAACTGATGGTCATAGCAAT 59.662 41.667 0.00 0.00 31.62 3.56
556 956 3.273434 GCTGAAACTGATGGTCATAGCA 58.727 45.455 0.00 0.00 31.62 3.49
561 961 0.396435 ACCGCTGAAACTGATGGTCA 59.604 50.000 0.00 0.00 0.00 4.02
562 962 2.271800 CTACCGCTGAAACTGATGGTC 58.728 52.381 0.00 0.00 0.00 4.02
564 964 1.009829 GCTACCGCTGAAACTGATGG 58.990 55.000 0.00 0.00 0.00 3.51
568 968 3.474806 CGGCTACCGCTGAAACTG 58.525 61.111 0.00 0.00 45.62 3.16
578 978 0.252197 AATTGGACTCCACGGCTACC 59.748 55.000 0.00 0.00 30.78 3.18
615 1015 6.368243 TCGCAAAATTGGTTGTTATCGTAGTA 59.632 34.615 0.00 0.00 0.00 1.82
617 1017 5.506832 GTCGCAAAATTGGTTGTTATCGTAG 59.493 40.000 0.00 0.00 0.00 3.51
618 1018 5.049612 TGTCGCAAAATTGGTTGTTATCGTA 60.050 36.000 0.00 0.00 0.00 3.43
620 1020 4.222886 TGTCGCAAAATTGGTTGTTATCG 58.777 39.130 0.00 0.00 0.00 2.92
621 1021 6.472163 CCTATGTCGCAAAATTGGTTGTTATC 59.528 38.462 0.00 0.00 0.00 1.75
622 1022 6.329496 CCTATGTCGCAAAATTGGTTGTTAT 58.671 36.000 0.00 0.00 0.00 1.89
623 1023 5.704888 CCTATGTCGCAAAATTGGTTGTTA 58.295 37.500 0.00 0.00 0.00 2.41
624 1024 4.555262 CCTATGTCGCAAAATTGGTTGTT 58.445 39.130 0.00 0.00 0.00 2.83
682 1106 4.694037 AGATTCTTGGCAAGTACCGTAAAC 59.306 41.667 25.39 10.89 0.00 2.01
686 1110 2.699954 CAGATTCTTGGCAAGTACCGT 58.300 47.619 25.39 9.25 0.00 4.83
689 1113 1.745653 GGGCAGATTCTTGGCAAGTAC 59.254 52.381 25.39 17.11 44.74 2.73
690 1114 1.678728 CGGGCAGATTCTTGGCAAGTA 60.679 52.381 25.39 17.65 44.74 2.24
691 1115 0.962356 CGGGCAGATTCTTGGCAAGT 60.962 55.000 25.39 8.63 44.74 3.16
692 1116 1.660560 CCGGGCAGATTCTTGGCAAG 61.661 60.000 21.17 21.17 44.74 4.01
693 1117 1.678635 CCGGGCAGATTCTTGGCAA 60.679 57.895 0.00 0.00 44.74 4.52
694 1118 2.045045 CCGGGCAGATTCTTGGCA 60.045 61.111 0.00 0.00 44.74 4.92
695 1119 2.044946 ACCGGGCAGATTCTTGGC 60.045 61.111 6.32 0.00 42.44 4.52
696 1120 0.107017 ATGACCGGGCAGATTCTTGG 60.107 55.000 18.96 0.00 0.00 3.61
697 1121 2.213499 GTATGACCGGGCAGATTCTTG 58.787 52.381 18.96 0.00 0.00 3.02
698 1122 1.141053 GGTATGACCGGGCAGATTCTT 59.859 52.381 18.96 0.00 0.00 2.52
706 1130 2.516225 GGCAAGGTATGACCGGGC 60.516 66.667 6.32 1.57 44.90 6.13
712 1136 1.476891 GTCGTCAGAGGCAAGGTATGA 59.523 52.381 0.00 0.00 0.00 2.15
719 1143 1.170290 TCTCACGTCGTCAGAGGCAA 61.170 55.000 11.53 0.00 35.81 4.52
721 1145 1.135731 CTCTCACGTCGTCAGAGGC 59.864 63.158 17.65 0.00 35.81 4.70
722 1146 1.135731 GCTCTCACGTCGTCAGAGG 59.864 63.158 25.01 9.36 35.19 3.69
800 1232 1.208706 GGGGAAGGAAGGAAGGAGAG 58.791 60.000 0.00 0.00 0.00 3.20
832 1264 4.019321 TGGATGACCGGATTCTTTCTTTCT 60.019 41.667 9.46 0.00 39.42 2.52
858 1290 3.136260 TGACGAATTGGATGGATCATGGA 59.864 43.478 0.00 0.00 0.00 3.41
859 1291 3.251729 GTGACGAATTGGATGGATCATGG 59.748 47.826 0.00 0.00 0.00 3.66
860 1292 3.059393 CGTGACGAATTGGATGGATCATG 60.059 47.826 0.00 0.00 0.00 3.07
861 1293 3.133691 CGTGACGAATTGGATGGATCAT 58.866 45.455 0.00 0.00 0.00 2.45
862 1294 2.093711 ACGTGACGAATTGGATGGATCA 60.094 45.455 13.70 0.00 0.00 2.92
864 1296 2.093711 TCACGTGACGAATTGGATGGAT 60.094 45.455 15.76 0.00 0.00 3.41
918 1354 2.080336 TTGGAAGGTGGCTGGAAGGG 62.080 60.000 0.00 0.00 0.00 3.95
937 1373 4.868172 TGGATTGGAATCAGGTTGAGAT 57.132 40.909 1.94 0.00 37.15 2.75
940 1376 3.025978 GCATGGATTGGAATCAGGTTGA 58.974 45.455 0.00 0.00 37.15 3.18
941 1377 3.028850 AGCATGGATTGGAATCAGGTTG 58.971 45.455 0.00 0.00 37.15 3.77
942 1378 3.028850 CAGCATGGATTGGAATCAGGTT 58.971 45.455 0.00 0.00 37.15 3.50
943 1379 2.024655 ACAGCATGGATTGGAATCAGGT 60.025 45.455 0.00 0.00 43.62 4.00
945 1381 3.446161 ACAACAGCATGGATTGGAATCAG 59.554 43.478 0.00 0.00 43.62 2.90
946 1382 3.433343 ACAACAGCATGGATTGGAATCA 58.567 40.909 0.00 0.00 43.62 2.57
947 1383 4.460948 AACAACAGCATGGATTGGAATC 57.539 40.909 0.00 0.00 43.62 2.52
948 1384 7.658525 TTATAACAACAGCATGGATTGGAAT 57.341 32.000 0.00 0.00 43.62 3.01
949 1385 7.473735 TTTATAACAACAGCATGGATTGGAA 57.526 32.000 0.00 0.00 43.62 3.53
951 1387 7.591057 CGTATTTATAACAACAGCATGGATTGG 59.409 37.037 0.00 0.00 43.62 3.16
952 1388 8.128582 ACGTATTTATAACAACAGCATGGATTG 58.871 33.333 0.00 0.00 43.62 2.67
953 1389 8.220755 ACGTATTTATAACAACAGCATGGATT 57.779 30.769 0.00 0.00 43.62 3.01
955 1391 6.819146 TGACGTATTTATAACAACAGCATGGA 59.181 34.615 0.00 0.00 43.62 3.41
956 1392 6.905076 GTGACGTATTTATAACAACAGCATGG 59.095 38.462 0.00 0.00 43.62 3.66
957 1393 7.425309 GTGTGACGTATTTATAACAACAGCATG 59.575 37.037 0.00 0.00 46.00 4.06
958 1394 7.118535 TGTGTGACGTATTTATAACAACAGCAT 59.881 33.333 0.00 0.00 0.00 3.79
959 1395 6.424207 TGTGTGACGTATTTATAACAACAGCA 59.576 34.615 0.00 0.00 0.00 4.41
960 1396 6.823531 TGTGTGACGTATTTATAACAACAGC 58.176 36.000 0.00 0.00 0.00 4.40
961 1397 7.949962 CACTGTGTGACGTATTTATAACAACAG 59.050 37.037 0.00 0.00 35.23 3.16
962 1398 7.652507 TCACTGTGTGACGTATTTATAACAACA 59.347 33.333 7.79 0.00 37.67 3.33
963 1399 8.009984 TCACTGTGTGACGTATTTATAACAAC 57.990 34.615 7.79 0.00 37.67 3.32
964 1400 8.590719 TTCACTGTGTGACGTATTTATAACAA 57.409 30.769 7.79 0.00 42.60 2.83
1060 1496 3.882025 CGGAAGGAACAGAGCAGC 58.118 61.111 0.00 0.00 0.00 5.25
1174 1610 4.832266 TGGTTCTTCAATTACCTGTGCAAT 59.168 37.500 0.00 0.00 33.05 3.56
1206 1642 1.065998 CCGAACCGAATAAGGAACCCA 60.066 52.381 0.00 0.00 34.73 4.51
1216 1652 2.585247 GCTAGCGCCGAACCGAAT 60.585 61.111 2.29 0.00 0.00 3.34
1245 1681 2.720392 CGTCAGCTCGATCTCGCG 60.720 66.667 0.00 0.00 39.60 5.87
1274 1710 2.620112 CCTTTCCTGCACCGCACAG 61.620 63.158 0.00 0.00 33.79 3.66
1275 1711 2.594303 CCTTTCCTGCACCGCACA 60.594 61.111 0.00 0.00 33.79 4.57
1276 1712 3.365265 CCCTTTCCTGCACCGCAC 61.365 66.667 0.00 0.00 33.79 5.34
1277 1713 4.659172 CCCCTTTCCTGCACCGCA 62.659 66.667 0.00 0.00 36.92 5.69
1278 1714 4.660938 ACCCCTTTCCTGCACCGC 62.661 66.667 0.00 0.00 0.00 5.68
1279 1715 2.672996 CACCCCTTTCCTGCACCG 60.673 66.667 0.00 0.00 0.00 4.94
1280 1716 1.303643 CTCACCCCTTTCCTGCACC 60.304 63.158 0.00 0.00 0.00 5.01
1281 1717 1.303643 CCTCACCCCTTTCCTGCAC 60.304 63.158 0.00 0.00 0.00 4.57
1449 1885 0.759060 AAGCTTTGGTGGGTGGGTTC 60.759 55.000 0.00 0.00 0.00 3.62
1476 1912 8.364142 ACTATCTGTGCTACCTTCATTTCTATC 58.636 37.037 0.00 0.00 0.00 2.08
1478 1914 7.342026 TCACTATCTGTGCTACCTTCATTTCTA 59.658 37.037 0.00 0.00 45.81 2.10
1481 1917 6.070538 AGTCACTATCTGTGCTACCTTCATTT 60.071 38.462 0.00 0.00 45.81 2.32
1484 1920 4.158579 CAGTCACTATCTGTGCTACCTTCA 59.841 45.833 0.00 0.00 45.81 3.02
1486 1922 4.158764 GTCAGTCACTATCTGTGCTACCTT 59.841 45.833 0.00 0.00 45.81 3.50
1516 1953 1.247567 CTGGCCTAATTATTGCGGGG 58.752 55.000 3.32 0.00 0.00 5.73
1521 1958 4.351192 GTTTGACGCTGGCCTAATTATTG 58.649 43.478 3.32 0.00 0.00 1.90
1532 1969 1.440938 TTTGACGGGTTTGACGCTGG 61.441 55.000 0.00 0.00 34.00 4.85
1535 1972 0.589223 TGATTTGACGGGTTTGACGC 59.411 50.000 0.00 0.00 34.00 5.19
1536 1973 1.871039 AGTGATTTGACGGGTTTGACG 59.129 47.619 0.00 0.00 37.36 4.35
1545 1982 2.949714 AGCGTTGAAGTGATTTGACG 57.050 45.000 0.00 0.00 0.00 4.35
1553 1990 9.055248 CATCTTAAATCTAAAAGCGTTGAAGTG 57.945 33.333 0.00 0.00 0.00 3.16
1610 2047 5.137403 CAGTGGTTTGTCGAGAAAAATACG 58.863 41.667 9.57 3.24 0.00 3.06
1613 2050 4.036380 GGACAGTGGTTTGTCGAGAAAAAT 59.964 41.667 9.57 0.00 46.61 1.82
1615 2052 2.940410 GGACAGTGGTTTGTCGAGAAAA 59.060 45.455 9.57 0.00 46.61 2.29
1617 2054 1.202604 GGGACAGTGGTTTGTCGAGAA 60.203 52.381 0.00 0.00 46.61 2.87
1618 2055 0.391597 GGGACAGTGGTTTGTCGAGA 59.608 55.000 0.00 0.00 46.61 4.04
1619 2056 0.393077 AGGGACAGTGGTTTGTCGAG 59.607 55.000 0.00 0.00 46.61 4.04
1620 2057 1.707106 TAGGGACAGTGGTTTGTCGA 58.293 50.000 0.00 0.00 46.61 4.20
1621 2058 2.762535 ATAGGGACAGTGGTTTGTCG 57.237 50.000 0.00 0.00 46.61 4.35
1622 2059 3.197983 AGCTATAGGGACAGTGGTTTGTC 59.802 47.826 1.04 0.00 45.28 3.18
1656 2492 3.349006 AGCCTGCGAACAAGCACG 61.349 61.111 0.00 0.00 42.92 5.34
1659 2504 2.980233 ACCAGCCTGCGAACAAGC 60.980 61.111 0.00 0.00 33.12 4.01
1714 2559 1.964552 CCCTGCATCTTTAGGCTCAG 58.035 55.000 0.00 0.00 32.35 3.35
1775 2621 4.854291 CGTACACTGAGAAACTGTGAGATC 59.146 45.833 12.27 0.00 46.54 2.75
1776 2622 4.519350 TCGTACACTGAGAAACTGTGAGAT 59.481 41.667 12.27 0.00 46.54 2.75
1778 2624 4.224715 TCGTACACTGAGAAACTGTGAG 57.775 45.455 12.27 5.26 46.54 3.51
1779 2625 4.519350 AGATCGTACACTGAGAAACTGTGA 59.481 41.667 12.27 0.00 46.54 3.58
1791 2650 2.522372 CGTTCGTGAGATCGTACACT 57.478 50.000 14.85 0.00 45.47 3.55
1798 2657 2.115595 CAGAGCATCGTTCGTGAGATC 58.884 52.381 0.00 0.00 42.67 2.75
1803 2662 0.388520 TGGTCAGAGCATCGTTCGTG 60.389 55.000 0.00 0.00 42.67 4.35
1810 2669 4.387598 AGCAGATTAATGGTCAGAGCATC 58.612 43.478 15.51 4.30 34.88 3.91
1831 2690 3.473647 TGAGGCCCGCTGATGGAG 61.474 66.667 0.00 0.00 0.00 3.86
2013 3082 2.205691 TGCACTGCATCGAGGAGAT 58.794 52.632 0.00 0.00 38.04 2.75
2014 3083 3.698765 TGCACTGCATCGAGGAGA 58.301 55.556 0.00 0.00 38.04 3.71
2023 3092 1.334556 GACAAGAACACATGCACTGCA 59.665 47.619 6.09 6.09 44.86 4.41
2024 3093 1.605710 AGACAAGAACACATGCACTGC 59.394 47.619 0.00 0.00 0.00 4.40
2025 3094 2.603892 GCAGACAAGAACACATGCACTG 60.604 50.000 0.00 0.00 33.92 3.66
2026 3095 1.605710 GCAGACAAGAACACATGCACT 59.394 47.619 0.00 0.00 33.92 4.40
2033 3102 1.279840 GCGGTGCAGACAAGAACAC 59.720 57.895 0.00 0.00 0.00 3.32
2035 3105 3.731136 TGCGGTGCAGACAAGAAC 58.269 55.556 0.00 0.00 33.32 3.01
2049 3119 3.305094 ACGTATCCGATTTTGTTACTGCG 59.695 43.478 0.00 0.00 37.88 5.18
2055 3125 2.070783 ACGCACGTATCCGATTTTGTT 58.929 42.857 9.04 0.00 37.88 2.83
2056 3126 1.392168 CACGCACGTATCCGATTTTGT 59.608 47.619 9.04 0.00 37.88 2.83
2205 3302 1.817099 GAACTGCAGCATCTCGGGG 60.817 63.158 15.27 0.00 0.00 5.73
2401 3520 1.851021 CTCATCTCGCTCCGCTCGAT 61.851 60.000 0.00 0.00 35.25 3.59
2642 5496 4.832608 GCTCCCCGGCGTACTTGG 62.833 72.222 6.01 0.00 0.00 3.61
2688 5542 3.623330 CCGACGAAATACGCGGCC 61.623 66.667 12.47 0.00 46.87 6.13
2697 5551 2.279584 TGCACGAAGCCGACGAAA 60.280 55.556 0.00 0.00 44.83 3.46
2698 5552 2.733218 CTGCACGAAGCCGACGAA 60.733 61.111 0.00 0.00 44.83 3.85
2763 5617 1.203441 TCACTCTGGCCAGCAATCCT 61.203 55.000 28.91 2.90 0.00 3.24
2766 5620 0.395311 CCATCACTCTGGCCAGCAAT 60.395 55.000 28.91 14.61 0.00 3.56
2817 5671 6.873076 CCATGAAGAAGGAATGATAGAGCTAC 59.127 42.308 0.00 0.00 0.00 3.58
2821 5675 5.618236 TGCCATGAAGAAGGAATGATAGAG 58.382 41.667 0.00 0.00 0.00 2.43
2822 5676 5.635278 TGCCATGAAGAAGGAATGATAGA 57.365 39.130 0.00 0.00 0.00 1.98
2823 5677 6.704289 TTTGCCATGAAGAAGGAATGATAG 57.296 37.500 0.00 0.00 0.00 2.08
2825 5679 5.622914 CGTTTTGCCATGAAGAAGGAATGAT 60.623 40.000 0.00 0.00 0.00 2.45
2826 5680 4.321156 CGTTTTGCCATGAAGAAGGAATGA 60.321 41.667 0.00 0.00 0.00 2.57
2827 5681 3.922240 CGTTTTGCCATGAAGAAGGAATG 59.078 43.478 0.00 0.00 0.00 2.67
2828 5682 3.826157 TCGTTTTGCCATGAAGAAGGAAT 59.174 39.130 0.00 0.00 0.00 3.01
2830 5684 2.813754 CTCGTTTTGCCATGAAGAAGGA 59.186 45.455 0.00 0.00 0.00 3.36
2831 5685 2.813754 TCTCGTTTTGCCATGAAGAAGG 59.186 45.455 0.00 0.00 0.00 3.46
2834 5688 1.806542 GCTCTCGTTTTGCCATGAAGA 59.193 47.619 0.00 0.00 0.00 2.87
2840 5701 2.307309 CGTCGCTCTCGTTTTGCCA 61.307 57.895 0.00 0.00 36.96 4.92
2853 5714 1.983605 TGATTCGTTTTCTCTCGTCGC 59.016 47.619 0.00 0.00 0.00 5.19
2989 7208 3.793559 GCTATAGGCGTTCTTTTCAGGA 58.206 45.455 1.04 0.00 0.00 3.86
3097 10074 7.309438 GGAAGAAAACAACTAGGATGCATCTTT 60.309 37.037 25.28 14.97 0.00 2.52
3105 10082 6.263168 CACAACAGGAAGAAAACAACTAGGAT 59.737 38.462 0.00 0.00 0.00 3.24
3107 10084 5.357032 ACACAACAGGAAGAAAACAACTAGG 59.643 40.000 0.00 0.00 0.00 3.02
3209 10190 7.668052 ACAGCCTAATAGGAAAACATGTAACAA 59.332 33.333 11.13 0.00 37.67 2.83
3248 10229 6.877611 AAACCGACAAGAAAACAGATGTAT 57.122 33.333 0.00 0.00 0.00 2.29
3261 10244 7.619964 AACTATACCCATAAAAACCGACAAG 57.380 36.000 0.00 0.00 0.00 3.16
3366 10349 8.588290 AACAAAGGAATAGTGGCACATAATAA 57.412 30.769 21.41 0.00 44.52 1.40
3467 10452 6.745450 ACCGACAAAATTTGCGTGAAATATAG 59.255 34.615 16.56 5.54 32.76 1.31
3557 10544 9.267084 GCAAAAATACCCACAAAAGAAAGAATA 57.733 29.630 0.00 0.00 0.00 1.75
3778 10888 9.920946 AATGAATTAGTGTCATTGGTATTACCT 57.079 29.630 13.90 0.00 42.68 3.08
3902 11024 9.314321 GCAAGAACTAACATATACTAGCAGAAA 57.686 33.333 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.