Multiple sequence alignment - TraesCS4D01G269600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G269600 chr4D 100.000 2629 0 0 1 2629 440410727 440408099 0.000000e+00 4855.0
1 TraesCS4D01G269600 chr4D 89.302 673 58 7 893 1556 440803322 440802655 0.000000e+00 832.0
2 TraesCS4D01G269600 chr4D 86.192 239 26 4 961 1192 440448838 440448600 4.340000e-63 252.0
3 TraesCS4D01G269600 chr4B 92.731 1307 70 8 1 1302 546084336 546083050 0.000000e+00 1864.0
4 TraesCS4D01G269600 chr4B 89.685 698 61 6 875 1563 546262772 546262077 0.000000e+00 880.0
5 TraesCS4D01G269600 chr4B 95.111 450 21 1 1945 2393 546078742 546078293 0.000000e+00 708.0
6 TraesCS4D01G269600 chr4B 94.961 258 12 1 1306 1563 546079024 546078768 1.130000e-108 403.0
7 TraesCS4D01G269600 chr4B 90.377 239 22 1 347 584 328107604 328107842 1.960000e-81 313.0
8 TraesCS4D01G269600 chr4B 83.382 343 36 9 871 1192 546127833 546127491 5.500000e-77 298.0
9 TraesCS4D01G269600 chrUn 89.679 717 50 13 867 1563 351561942 351561230 0.000000e+00 893.0
10 TraesCS4D01G269600 chrUn 89.256 726 54 13 858 1563 243401343 243402064 0.000000e+00 887.0
11 TraesCS4D01G269600 chrUn 95.442 373 17 0 1564 1936 91767513 91767885 1.740000e-166 595.0
12 TraesCS4D01G269600 chrUn 89.960 249 12 9 1326 1563 334637763 334637517 2.540000e-80 309.0
13 TraesCS4D01G269600 chrUn 89.960 249 12 9 1326 1563 392980328 392980574 2.540000e-80 309.0
14 TraesCS4D01G269600 chrUn 90.991 111 8 2 858 966 267333699 267333589 5.860000e-32 148.0
15 TraesCS4D01G269600 chr4A 89.713 661 43 7 854 1498 29386763 29386112 0.000000e+00 821.0
16 TraesCS4D01G269600 chr4A 89.120 432 34 9 1143 1563 29737246 29736817 2.320000e-145 525.0
17 TraesCS4D01G269600 chr4A 88.435 294 23 8 858 1142 29738008 29737717 6.970000e-91 344.0
18 TraesCS4D01G269600 chr4A 81.214 346 42 15 856 1192 29456492 29456161 9.340000e-65 257.0
19 TraesCS4D01G269600 chr4A 79.091 220 41 5 615 831 59384265 59384482 2.110000e-31 147.0
20 TraesCS4D01G269600 chr4A 83.766 154 24 1 580 733 29386916 29386764 7.580000e-31 145.0
21 TraesCS4D01G269600 chr4A 79.688 128 23 3 100 226 604662294 604662419 3.600000e-14 89.8
22 TraesCS4D01G269600 chr6D 96.552 377 12 1 1564 1939 352857991 352858367 7.990000e-175 623.0
23 TraesCS4D01G269600 chr6D 94.164 377 20 2 1564 1940 24577236 24576862 8.160000e-160 573.0
24 TraesCS4D01G269600 chr6D 93.915 378 20 3 1564 1939 455577587 455577211 3.800000e-158 568.0
25 TraesCS4D01G269600 chr7D 95.968 372 15 0 1565 1936 137692768 137693139 2.890000e-169 604.0
26 TraesCS4D01G269600 chr7D 93.883 376 23 0 1564 1939 51790473 51790848 3.800000e-158 568.0
27 TraesCS4D01G269600 chr7D 93.651 378 24 0 1564 1941 388132664 388133041 1.370000e-157 566.0
28 TraesCS4D01G269600 chr7D 89.388 245 25 1 347 591 265000441 265000198 9.140000e-80 307.0
29 TraesCS4D01G269600 chr7D 86.111 216 28 2 612 825 602074106 602073891 5.660000e-57 231.0
30 TraesCS4D01G269600 chr2D 94.149 376 20 2 1564 1939 390604586 390604959 2.940000e-159 571.0
31 TraesCS4D01G269600 chr2D 92.827 237 15 1 2395 2629 513108268 513108504 2.510000e-90 342.0
32 TraesCS4D01G269600 chr2D 93.500 200 12 1 2431 2629 27486887 27487086 1.980000e-76 296.0
33 TraesCS4D01G269600 chr1D 94.102 373 21 1 1564 1935 28576685 28577057 1.370000e-157 566.0
34 TraesCS4D01G269600 chr3D 95.339 236 10 1 2394 2629 26152387 26152153 8.890000e-100 374.0
35 TraesCS4D01G269600 chr3D 91.600 250 19 2 337 585 376174101 376174349 6.970000e-91 344.0
36 TraesCS4D01G269600 chr3D 89.958 239 22 2 347 584 316825636 316825399 9.140000e-80 307.0
37 TraesCS4D01G269600 chr2B 89.669 242 25 0 343 584 559951932 559951691 2.540000e-80 309.0
38 TraesCS4D01G269600 chr2B 76.279 215 39 8 612 825 93171569 93171366 1.290000e-18 104.0
39 TraesCS4D01G269600 chr7A 88.800 250 26 2 341 590 725209593 725209346 3.290000e-79 305.0
40 TraesCS4D01G269600 chr5D 95.676 185 8 0 2395 2579 2786097 2786281 5.500000e-77 298.0
41 TraesCS4D01G269600 chr5D 81.019 216 36 5 612 824 44051577 44051790 1.620000e-37 167.0
42 TraesCS4D01G269600 chr5D 96.296 54 2 0 2576 2629 2786453 2786506 3.600000e-14 89.8
43 TraesCS4D01G269600 chr5A 89.167 240 24 2 346 584 6147583 6147345 5.500000e-77 298.0
44 TraesCS4D01G269600 chr3A 88.889 243 25 2 347 588 265230014 265230255 5.500000e-77 298.0
45 TraesCS4D01G269600 chr3A 79.894 189 28 10 2402 2586 679982093 679981911 2.120000e-26 130.0
46 TraesCS4D01G269600 chr6B 86.996 223 26 3 2395 2615 643409147 643408926 5.620000e-62 248.0
47 TraesCS4D01G269600 chr6B 100.000 34 0 0 103 136 190179722 190179689 2.180000e-06 63.9
48 TraesCS4D01G269600 chr2A 85.321 218 29 3 612 827 693154212 693154428 3.410000e-54 222.0
49 TraesCS4D01G269600 chr7B 80.822 219 37 5 612 826 381858708 381858925 1.620000e-37 167.0
50 TraesCS4D01G269600 chr5B 80.193 207 35 6 612 814 656044430 656044634 1.630000e-32 150.0
51 TraesCS4D01G269600 chr5B 78.605 215 39 6 613 824 321561657 321561867 4.560000e-28 135.0
52 TraesCS4D01G269600 chr1B 86.822 129 11 4 2395 2521 545275881 545275757 3.530000e-29 139.0
53 TraesCS4D01G269600 chr3B 87.273 110 7 6 2384 2491 595362710 595362606 4.600000e-23 119.0
54 TraesCS4D01G269600 chr3B 87.778 90 9 2 2384 2472 595362337 595362249 1.290000e-18 104.0
55 TraesCS4D01G269600 chr6A 89.583 48 4 1 102 148 604533629 604533676 2.830000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G269600 chr4D 440408099 440410727 2628 True 4855.0 4855 100.0000 1 2629 1 chr4D.!!$R1 2628
1 TraesCS4D01G269600 chr4D 440802655 440803322 667 True 832.0 832 89.3020 893 1556 1 chr4D.!!$R3 663
2 TraesCS4D01G269600 chr4B 546083050 546084336 1286 True 1864.0 1864 92.7310 1 1302 1 chr4B.!!$R1 1301
3 TraesCS4D01G269600 chr4B 546262077 546262772 695 True 880.0 880 89.6850 875 1563 1 chr4B.!!$R3 688
4 TraesCS4D01G269600 chr4B 546078293 546079024 731 True 555.5 708 95.0360 1306 2393 2 chr4B.!!$R4 1087
5 TraesCS4D01G269600 chrUn 351561230 351561942 712 True 893.0 893 89.6790 867 1563 1 chrUn.!!$R3 696
6 TraesCS4D01G269600 chrUn 243401343 243402064 721 False 887.0 887 89.2560 858 1563 1 chrUn.!!$F2 705
7 TraesCS4D01G269600 chr4A 29386112 29386916 804 True 483.0 821 86.7395 580 1498 2 chr4A.!!$R2 918
8 TraesCS4D01G269600 chr4A 29736817 29738008 1191 True 434.5 525 88.7775 858 1563 2 chr4A.!!$R3 705

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 638 0.655733 CACGTGCACGAAAACTTCCT 59.344 50.0 42.94 16.79 43.02 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1913 2418 0.034186 TTGGCAATGGCTCCTAGGTG 60.034 55.0 9.08 7.68 40.87 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 2.428890 ACTTTTGCCCACACGATTCAAA 59.571 40.909 0.00 0.00 0.00 2.69
104 105 3.436704 AGAAGCCATGTGTTCAATGTACG 59.563 43.478 6.96 0.00 0.00 3.67
105 106 2.083774 AGCCATGTGTTCAATGTACGG 58.916 47.619 0.00 0.00 0.00 4.02
111 112 2.486203 TGTGTTCAATGTACGGGATTGC 59.514 45.455 0.62 0.00 31.89 3.56
124 125 2.797156 CGGGATTGCTAAATCTCAGTCG 59.203 50.000 0.00 0.00 42.61 4.18
126 127 2.545946 GGATTGCTAAATCTCAGTCGGC 59.454 50.000 0.00 0.00 41.74 5.54
200 201 8.137437 TGAAGATCTGTGTGATTTTTCTTTTCC 58.863 33.333 0.00 0.00 35.14 3.13
264 266 2.093869 TGAGATTTAGGTACACCCACGC 60.094 50.000 0.00 0.00 36.42 5.34
289 291 5.221925 ACGGGATTGCTAAATACTCCATGAT 60.222 40.000 0.00 0.00 0.00 2.45
294 296 9.066892 GGATTGCTAAATACTCCATGATGTAAA 57.933 33.333 0.00 0.00 0.00 2.01
296 298 9.851686 ATTGCTAAATACTCCATGATGTAAAGA 57.148 29.630 0.00 0.00 0.00 2.52
305 307 7.624549 ACTCCATGATGTAAAGACTTGTATGT 58.375 34.615 0.00 0.00 0.00 2.29
316 318 9.098355 GTAAAGACTTGTATGTGCTTCATGATA 57.902 33.333 0.00 0.00 37.91 2.15
321 323 7.923888 ACTTGTATGTGCTTCATGATATGAAC 58.076 34.615 0.00 0.00 43.84 3.18
338 340 5.648178 ATGAACAATTTGCATGTGCTAGA 57.352 34.783 6.55 0.00 42.66 2.43
353 355 7.494625 GCATGTGCTAGAAAAATAGTACTACCA 59.505 37.037 4.31 0.00 38.68 3.25
374 376 4.202192 CCACCGTCCTACTTTATTAGTCCC 60.202 50.000 0.00 0.00 38.33 4.46
376 378 4.892345 ACCGTCCTACTTTATTAGTCCCTC 59.108 45.833 0.00 0.00 38.33 4.30
576 578 6.540438 AGAGGACTTATAAACCATGACGAA 57.460 37.500 0.00 0.00 0.00 3.85
577 579 6.574350 AGAGGACTTATAAACCATGACGAAG 58.426 40.000 0.00 0.00 0.00 3.79
578 580 5.671493 AGGACTTATAAACCATGACGAAGG 58.329 41.667 0.00 0.00 0.00 3.46
636 638 0.655733 CACGTGCACGAAAACTTCCT 59.344 50.000 42.94 16.79 43.02 3.36
679 681 3.394836 GCTTCGGCAGGGGAGAGT 61.395 66.667 0.00 0.00 41.33 3.24
736 738 1.995376 AGTGGTTGTTTGGGGTCATC 58.005 50.000 0.00 0.00 0.00 2.92
799 801 9.656040 TTGTACTTCCGCTAAACTTGATAATAA 57.344 29.630 0.00 0.00 0.00 1.40
880 883 1.493772 CAGACACCTTAACACGCGAA 58.506 50.000 15.93 0.00 0.00 4.70
1310 1804 4.057428 GCTGAGGACCACGCGACT 62.057 66.667 15.93 1.96 0.00 4.18
1485 1982 3.251479 TCGATCAGTCATCACCTTTGG 57.749 47.619 0.00 0.00 0.00 3.28
1494 1991 6.206634 TCAGTCATCACCTTTGGTTCATTTAC 59.793 38.462 0.00 0.00 31.02 2.01
1495 1992 5.181245 AGTCATCACCTTTGGTTCATTTACG 59.819 40.000 0.00 0.00 31.02 3.18
1556 2061 4.227512 TCACATGTGAACAGTGAAATGC 57.772 40.909 26.02 0.00 39.15 3.56
1563 2068 4.161333 GTGAACAGTGAAATGCTGCATAC 58.839 43.478 16.58 10.63 37.47 2.39
1564 2069 3.120234 TGAACAGTGAAATGCTGCATACG 60.120 43.478 16.58 9.32 37.47 3.06
1565 2070 1.739466 ACAGTGAAATGCTGCATACGG 59.261 47.619 16.58 13.25 37.47 4.02
1566 2071 1.739466 CAGTGAAATGCTGCATACGGT 59.261 47.619 16.58 1.62 0.00 4.83
1567 2072 1.739466 AGTGAAATGCTGCATACGGTG 59.261 47.619 16.58 0.00 0.00 4.94
1568 2073 1.468520 GTGAAATGCTGCATACGGTGT 59.531 47.619 16.58 0.00 0.00 4.16
1570 2075 2.556189 TGAAATGCTGCATACGGTGTTT 59.444 40.909 16.58 5.17 0.00 2.83
1571 2076 3.005261 TGAAATGCTGCATACGGTGTTTT 59.995 39.130 16.58 4.38 0.00 2.43
1572 2077 2.634982 ATGCTGCATACGGTGTTTTG 57.365 45.000 14.52 0.00 0.00 2.44
1573 2078 0.595588 TGCTGCATACGGTGTTTTGG 59.404 50.000 0.00 0.00 0.00 3.28
1574 2079 0.732538 GCTGCATACGGTGTTTTGGC 60.733 55.000 0.00 0.00 0.00 4.52
1575 2080 0.881118 CTGCATACGGTGTTTTGGCT 59.119 50.000 0.00 0.00 0.00 4.75
1576 2081 0.878416 TGCATACGGTGTTTTGGCTC 59.122 50.000 0.00 0.00 0.00 4.70
1577 2082 1.165270 GCATACGGTGTTTTGGCTCT 58.835 50.000 0.00 0.00 0.00 4.09
1578 2083 1.539827 GCATACGGTGTTTTGGCTCTT 59.460 47.619 0.00 0.00 0.00 2.85
1579 2084 2.745281 GCATACGGTGTTTTGGCTCTTA 59.255 45.455 0.00 0.00 0.00 2.10
1580 2085 3.181510 GCATACGGTGTTTTGGCTCTTAG 60.182 47.826 0.00 0.00 0.00 2.18
1581 2086 1.892209 ACGGTGTTTTGGCTCTTAGG 58.108 50.000 0.00 0.00 0.00 2.69
1582 2087 1.142262 ACGGTGTTTTGGCTCTTAGGT 59.858 47.619 0.00 0.00 0.00 3.08
1583 2088 1.535462 CGGTGTTTTGGCTCTTAGGTG 59.465 52.381 0.00 0.00 0.00 4.00
1584 2089 1.269723 GGTGTTTTGGCTCTTAGGTGC 59.730 52.381 0.00 0.00 0.00 5.01
1585 2090 1.953686 GTGTTTTGGCTCTTAGGTGCA 59.046 47.619 1.18 0.00 34.07 4.57
1586 2091 2.558359 GTGTTTTGGCTCTTAGGTGCAT 59.442 45.455 1.18 0.00 34.07 3.96
1587 2092 3.756434 GTGTTTTGGCTCTTAGGTGCATA 59.244 43.478 1.18 0.00 34.07 3.14
1588 2093 4.399303 GTGTTTTGGCTCTTAGGTGCATAT 59.601 41.667 1.18 0.00 34.07 1.78
1589 2094 4.398988 TGTTTTGGCTCTTAGGTGCATATG 59.601 41.667 0.00 0.00 34.07 1.78
1590 2095 3.931907 TTGGCTCTTAGGTGCATATGT 57.068 42.857 4.29 0.00 34.07 2.29
1591 2096 5.366482 TTTGGCTCTTAGGTGCATATGTA 57.634 39.130 4.29 0.00 34.07 2.29
1592 2097 4.336889 TGGCTCTTAGGTGCATATGTAC 57.663 45.455 14.90 14.90 34.07 2.90
1599 2104 2.656947 GGTGCATATGTACCCATGGT 57.343 50.000 27.46 1.30 43.79 3.55
1600 2105 2.504367 GGTGCATATGTACCCATGGTC 58.496 52.381 27.46 5.22 43.79 4.02
1601 2106 2.106511 GGTGCATATGTACCCATGGTCT 59.893 50.000 27.46 0.00 43.79 3.85
1602 2107 3.326588 GGTGCATATGTACCCATGGTCTA 59.673 47.826 27.46 0.00 43.79 2.59
1603 2108 4.202419 GGTGCATATGTACCCATGGTCTAA 60.202 45.833 27.46 0.00 43.79 2.10
1604 2109 5.373222 GTGCATATGTACCCATGGTCTAAA 58.627 41.667 11.73 0.00 37.09 1.85
1605 2110 6.003950 GTGCATATGTACCCATGGTCTAAAT 58.996 40.000 11.73 2.98 37.09 1.40
1606 2111 7.165485 GTGCATATGTACCCATGGTCTAAATA 58.835 38.462 11.73 5.15 37.09 1.40
1607 2112 7.829211 GTGCATATGTACCCATGGTCTAAATAT 59.171 37.037 11.73 7.18 37.09 1.28
1608 2113 9.052365 TGCATATGTACCCATGGTCTAAATATA 57.948 33.333 11.73 0.90 37.09 0.86
1609 2114 9.326413 GCATATGTACCCATGGTCTAAATATAC 57.674 37.037 11.73 1.93 37.09 1.47
1617 2122 9.707957 ACCCATGGTCTAAATATACATTTTGAA 57.292 29.630 11.73 0.00 37.54 2.69
1648 2153 5.574815 AAATTCGAAACAAAAATCCTGCG 57.425 34.783 0.00 0.00 0.00 5.18
1649 2154 2.697431 TCGAAACAAAAATCCTGCGG 57.303 45.000 0.00 0.00 0.00 5.69
1650 2155 1.950909 TCGAAACAAAAATCCTGCGGT 59.049 42.857 0.00 0.00 0.00 5.68
1651 2156 3.139850 TCGAAACAAAAATCCTGCGGTA 58.860 40.909 0.00 0.00 0.00 4.02
1652 2157 3.754323 TCGAAACAAAAATCCTGCGGTAT 59.246 39.130 0.00 0.00 0.00 2.73
1653 2158 4.936411 TCGAAACAAAAATCCTGCGGTATA 59.064 37.500 0.00 0.00 0.00 1.47
1654 2159 5.587043 TCGAAACAAAAATCCTGCGGTATAT 59.413 36.000 0.00 0.00 0.00 0.86
1655 2160 5.907391 CGAAACAAAAATCCTGCGGTATATC 59.093 40.000 0.00 0.00 0.00 1.63
1656 2161 5.767816 AACAAAAATCCTGCGGTATATCC 57.232 39.130 0.00 0.00 0.00 2.59
1672 2177 7.050970 GGTATATCCGGACATTCTATATGCA 57.949 40.000 6.12 0.00 0.00 3.96
1673 2178 7.671302 GGTATATCCGGACATTCTATATGCAT 58.329 38.462 6.12 3.79 0.00 3.96
1674 2179 7.600375 GGTATATCCGGACATTCTATATGCATG 59.400 40.741 6.12 0.00 0.00 4.06
1675 2180 4.890158 TCCGGACATTCTATATGCATGT 57.110 40.909 10.16 5.06 35.33 3.21
1676 2181 5.993748 TCCGGACATTCTATATGCATGTA 57.006 39.130 10.16 6.18 32.89 2.29
1677 2182 5.720202 TCCGGACATTCTATATGCATGTAC 58.280 41.667 10.16 0.00 32.89 2.90
1678 2183 5.245075 TCCGGACATTCTATATGCATGTACA 59.755 40.000 10.16 0.00 33.56 2.90
1679 2184 5.931724 CCGGACATTCTATATGCATGTACAA 59.068 40.000 10.16 1.10 33.56 2.41
1680 2185 6.426633 CCGGACATTCTATATGCATGTACAAA 59.573 38.462 10.16 2.91 33.56 2.83
1681 2186 7.041440 CCGGACATTCTATATGCATGTACAAAA 60.041 37.037 10.16 0.43 33.56 2.44
1682 2187 8.506437 CGGACATTCTATATGCATGTACAAAAT 58.494 33.333 10.16 2.76 33.56 1.82
1687 2192 9.985730 ATTCTATATGCATGTACAAAATTTGGG 57.014 29.630 10.16 0.00 34.12 4.12
1688 2193 8.532186 TCTATATGCATGTACAAAATTTGGGT 57.468 30.769 10.16 0.00 34.12 4.51
1689 2194 8.412456 TCTATATGCATGTACAAAATTTGGGTG 58.588 33.333 10.16 4.50 34.12 4.61
1690 2195 4.944619 TGCATGTACAAAATTTGGGTGA 57.055 36.364 10.71 0.00 34.12 4.02
1691 2196 5.282055 TGCATGTACAAAATTTGGGTGAA 57.718 34.783 10.71 0.00 34.12 3.18
1692 2197 5.674525 TGCATGTACAAAATTTGGGTGAAA 58.325 33.333 10.71 0.00 34.12 2.69
1693 2198 6.115446 TGCATGTACAAAATTTGGGTGAAAA 58.885 32.000 10.71 0.00 34.12 2.29
1694 2199 6.599244 TGCATGTACAAAATTTGGGTGAAAAA 59.401 30.769 10.71 0.00 34.12 1.94
1695 2200 6.909895 GCATGTACAAAATTTGGGTGAAAAAC 59.090 34.615 10.71 0.00 34.12 2.43
1696 2201 6.648725 TGTACAAAATTTGGGTGAAAAACG 57.351 33.333 10.71 0.00 34.12 3.60
1697 2202 6.395629 TGTACAAAATTTGGGTGAAAAACGA 58.604 32.000 10.71 0.00 34.12 3.85
1698 2203 5.788055 ACAAAATTTGGGTGAAAAACGAC 57.212 34.783 10.71 0.00 34.12 4.34
1699 2204 4.327627 ACAAAATTTGGGTGAAAAACGACG 59.672 37.500 10.71 0.00 34.12 5.12
1700 2205 3.786516 AATTTGGGTGAAAAACGACGT 57.213 38.095 0.00 0.00 0.00 4.34
1701 2206 3.786516 ATTTGGGTGAAAAACGACGTT 57.213 38.095 7.57 7.57 0.00 3.99
1702 2207 3.572604 TTTGGGTGAAAAACGACGTTT 57.427 38.095 19.83 19.83 37.34 3.60
1703 2208 3.572604 TTGGGTGAAAAACGACGTTTT 57.427 38.095 28.19 28.19 45.94 2.43
1764 2269 8.969260 ATGAATAGTTGTAATGAAGCATCAGA 57.031 30.769 0.00 0.00 39.39 3.27
1765 2270 8.791327 TGAATAGTTGTAATGAAGCATCAGAA 57.209 30.769 0.00 0.00 39.39 3.02
1766 2271 9.399797 TGAATAGTTGTAATGAAGCATCAGAAT 57.600 29.630 0.00 0.00 39.39 2.40
1770 2275 7.889469 AGTTGTAATGAAGCATCAGAATTTGT 58.111 30.769 0.00 0.00 39.39 2.83
1771 2276 8.025445 AGTTGTAATGAAGCATCAGAATTTGTC 58.975 33.333 0.00 0.00 39.39 3.18
1772 2277 7.692460 TGTAATGAAGCATCAGAATTTGTCT 57.308 32.000 0.00 0.00 39.39 3.41
1773 2278 8.114331 TGTAATGAAGCATCAGAATTTGTCTT 57.886 30.769 0.00 0.00 39.39 3.01
1774 2279 8.579006 TGTAATGAAGCATCAGAATTTGTCTTT 58.421 29.630 0.00 0.00 39.39 2.52
1775 2280 9.415544 GTAATGAAGCATCAGAATTTGTCTTTT 57.584 29.630 0.00 0.00 39.39 2.27
1776 2281 8.897872 AATGAAGCATCAGAATTTGTCTTTTT 57.102 26.923 0.00 0.00 39.39 1.94
1813 2318 6.862711 AAAAACCTTGTTTTTCACCGAAAA 57.137 29.167 10.91 0.00 39.36 2.29
1814 2319 5.849357 AAACCTTGTTTTTCACCGAAAAC 57.151 34.783 1.50 6.34 45.31 2.43
1815 2320 4.794278 ACCTTGTTTTTCACCGAAAACT 57.206 36.364 12.64 0.00 45.32 2.66
1816 2321 5.142061 ACCTTGTTTTTCACCGAAAACTT 57.858 34.783 12.64 0.00 45.32 2.66
1817 2322 5.543714 ACCTTGTTTTTCACCGAAAACTTT 58.456 33.333 12.64 0.00 45.32 2.66
1818 2323 5.407084 ACCTTGTTTTTCACCGAAAACTTTG 59.593 36.000 12.64 5.41 45.32 2.77
1819 2324 5.407084 CCTTGTTTTTCACCGAAAACTTTGT 59.593 36.000 12.64 0.00 45.32 2.83
1820 2325 5.830900 TGTTTTTCACCGAAAACTTTGTG 57.169 34.783 12.64 0.00 45.32 3.33
1821 2326 4.686554 TGTTTTTCACCGAAAACTTTGTGG 59.313 37.500 12.64 0.00 45.32 4.17
1822 2327 4.785511 TTTTCACCGAAAACTTTGTGGA 57.214 36.364 0.00 0.00 36.73 4.02
1823 2328 3.768468 TTCACCGAAAACTTTGTGGAC 57.232 42.857 0.00 0.00 0.00 4.02
1824 2329 1.666700 TCACCGAAAACTTTGTGGACG 59.333 47.619 0.00 0.00 0.00 4.79
1825 2330 0.379316 ACCGAAAACTTTGTGGACGC 59.621 50.000 0.00 0.00 0.00 5.19
1826 2331 0.378962 CCGAAAACTTTGTGGACGCA 59.621 50.000 0.00 0.00 0.00 5.24
1827 2332 1.462791 CGAAAACTTTGTGGACGCAC 58.537 50.000 0.00 0.00 0.00 5.34
1828 2333 1.202087 CGAAAACTTTGTGGACGCACA 60.202 47.619 0.00 0.00 0.00 4.57
1829 2334 2.540769 CGAAAACTTTGTGGACGCACAT 60.541 45.455 0.00 0.00 34.76 3.21
1830 2335 3.303461 CGAAAACTTTGTGGACGCACATA 60.303 43.478 0.00 0.00 34.76 2.29
1831 2336 3.896648 AAACTTTGTGGACGCACATAG 57.103 42.857 10.49 10.49 39.14 2.23
1832 2337 2.831685 ACTTTGTGGACGCACATAGA 57.168 45.000 16.33 0.00 37.50 1.98
1833 2338 3.120321 ACTTTGTGGACGCACATAGAA 57.880 42.857 16.33 1.30 37.50 2.10
1834 2339 3.674997 ACTTTGTGGACGCACATAGAAT 58.325 40.909 16.33 0.00 37.50 2.40
1835 2340 3.436704 ACTTTGTGGACGCACATAGAATG 59.563 43.478 16.33 0.95 37.50 2.67
1836 2341 2.760634 TGTGGACGCACATAGAATGT 57.239 45.000 0.00 0.00 46.22 2.71
1837 2342 2.616960 TGTGGACGCACATAGAATGTC 58.383 47.619 0.00 0.00 42.70 3.06
1841 2346 3.659850 CGCACATAGAATGTCCGGA 57.340 52.632 0.00 0.00 40.59 5.14
1842 2347 1.934589 CGCACATAGAATGTCCGGAA 58.065 50.000 5.23 0.00 40.59 4.30
1843 2348 2.276201 CGCACATAGAATGTCCGGAAA 58.724 47.619 5.23 0.00 40.59 3.13
1844 2349 2.872245 CGCACATAGAATGTCCGGAAAT 59.128 45.455 5.23 2.15 40.59 2.17
1845 2350 4.055360 CGCACATAGAATGTCCGGAAATA 58.945 43.478 7.79 0.00 40.59 1.40
1846 2351 4.084537 CGCACATAGAATGTCCGGAAATAC 60.085 45.833 7.79 0.00 40.59 1.89
1847 2352 4.814234 GCACATAGAATGTCCGGAAATACA 59.186 41.667 7.79 1.03 42.70 2.29
1848 2353 5.277345 GCACATAGAATGTCCGGAAATACAC 60.277 44.000 7.79 3.01 42.70 2.90
1849 2354 5.815222 CACATAGAATGTCCGGAAATACACA 59.185 40.000 7.79 0.00 42.70 3.72
1850 2355 5.815740 ACATAGAATGTCCGGAAATACACAC 59.184 40.000 7.79 0.00 39.92 3.82
1851 2356 3.259064 AGAATGTCCGGAAATACACACG 58.741 45.455 7.79 0.00 0.00 4.49
1853 2358 0.037139 TGTCCGGAAATACACACGGG 60.037 55.000 5.23 0.00 45.97 5.28
1854 2359 0.247185 GTCCGGAAATACACACGGGA 59.753 55.000 5.23 0.00 45.97 5.14
1855 2360 1.134610 GTCCGGAAATACACACGGGAT 60.135 52.381 5.23 0.00 45.97 3.85
1856 2361 1.555992 TCCGGAAATACACACGGGATT 59.444 47.619 0.00 0.00 45.97 3.01
1857 2362 2.027007 TCCGGAAATACACACGGGATTT 60.027 45.455 0.00 0.00 45.97 2.17
1858 2363 2.750712 CCGGAAATACACACGGGATTTT 59.249 45.455 0.00 0.00 42.48 1.82
1859 2364 3.191791 CCGGAAATACACACGGGATTTTT 59.808 43.478 0.00 0.00 42.48 1.94
1860 2365 4.162812 CGGAAATACACACGGGATTTTTG 58.837 43.478 0.00 0.00 0.00 2.44
1861 2366 4.320641 CGGAAATACACACGGGATTTTTGT 60.321 41.667 0.00 0.00 0.00 2.83
1862 2367 5.534407 GGAAATACACACGGGATTTTTGTT 58.466 37.500 0.00 0.00 0.00 2.83
1863 2368 5.631929 GGAAATACACACGGGATTTTTGTTC 59.368 40.000 0.00 0.00 0.00 3.18
1864 2369 2.766970 ACACACGGGATTTTTGTTCG 57.233 45.000 0.00 0.00 0.00 3.95
1865 2370 1.335496 ACACACGGGATTTTTGTTCGG 59.665 47.619 0.00 0.00 0.00 4.30
1866 2371 1.604755 CACACGGGATTTTTGTTCGGA 59.395 47.619 0.00 0.00 0.00 4.55
1867 2372 2.033550 CACACGGGATTTTTGTTCGGAA 59.966 45.455 0.00 0.00 0.00 4.30
1868 2373 2.888414 ACACGGGATTTTTGTTCGGAAT 59.112 40.909 0.00 0.00 0.00 3.01
1869 2374 3.319689 ACACGGGATTTTTGTTCGGAATT 59.680 39.130 0.00 0.00 0.00 2.17
1870 2375 4.202172 ACACGGGATTTTTGTTCGGAATTT 60.202 37.500 0.00 0.00 0.00 1.82
1871 2376 4.747605 CACGGGATTTTTGTTCGGAATTTT 59.252 37.500 0.00 0.00 0.00 1.82
1872 2377 5.235401 CACGGGATTTTTGTTCGGAATTTTT 59.765 36.000 0.00 0.00 0.00 1.94
1873 2378 5.464057 ACGGGATTTTTGTTCGGAATTTTTC 59.536 36.000 0.00 0.00 0.00 2.29
1874 2379 5.463724 CGGGATTTTTGTTCGGAATTTTTCA 59.536 36.000 0.00 0.00 0.00 2.69
1875 2380 6.018669 CGGGATTTTTGTTCGGAATTTTTCAA 60.019 34.615 0.00 0.00 0.00 2.69
1876 2381 7.129622 GGGATTTTTGTTCGGAATTTTTCAAC 58.870 34.615 0.00 0.00 0.00 3.18
1877 2382 7.011950 GGGATTTTTGTTCGGAATTTTTCAACT 59.988 33.333 0.00 0.00 0.00 3.16
1878 2383 8.394877 GGATTTTTGTTCGGAATTTTTCAACTT 58.605 29.630 0.00 0.00 0.00 2.66
1879 2384 9.767684 GATTTTTGTTCGGAATTTTTCAACTTT 57.232 25.926 0.00 0.00 0.00 2.66
1881 2386 9.600646 TTTTTGTTCGGAATTTTTCAACTTTTC 57.399 25.926 0.00 0.00 0.00 2.29
1882 2387 7.891183 TTGTTCGGAATTTTTCAACTTTTCA 57.109 28.000 0.00 0.00 0.00 2.69
1883 2388 7.891183 TGTTCGGAATTTTTCAACTTTTCAA 57.109 28.000 0.00 0.00 0.00 2.69
1884 2389 8.311650 TGTTCGGAATTTTTCAACTTTTCAAA 57.688 26.923 0.00 0.00 0.00 2.69
1885 2390 8.774586 TGTTCGGAATTTTTCAACTTTTCAAAA 58.225 25.926 0.00 0.00 0.00 2.44
1886 2391 9.767684 GTTCGGAATTTTTCAACTTTTCAAAAT 57.232 25.926 0.00 0.00 31.57 1.82
1887 2392 9.766277 TTCGGAATTTTTCAACTTTTCAAAATG 57.234 25.926 0.00 0.00 30.89 2.32
1888 2393 8.940952 TCGGAATTTTTCAACTTTTCAAAATGT 58.059 25.926 0.00 0.00 30.89 2.71
1889 2394 9.553418 CGGAATTTTTCAACTTTTCAAAATGTT 57.447 25.926 2.02 2.02 36.91 2.71
1913 2418 8.334632 GTTTATTTAAACAATGGGTGCATATGC 58.665 33.333 21.09 21.09 43.70 3.14
1924 2429 3.239861 GCATATGCACCTAGGAGCC 57.760 57.895 25.94 8.49 41.59 4.70
1925 2430 0.397941 GCATATGCACCTAGGAGCCA 59.602 55.000 25.94 15.42 41.59 4.75
1926 2431 1.004044 GCATATGCACCTAGGAGCCAT 59.996 52.381 25.94 20.24 41.59 4.40
1927 2432 2.553904 GCATATGCACCTAGGAGCCATT 60.554 50.000 25.94 14.38 41.59 3.16
1928 2433 2.936919 TATGCACCTAGGAGCCATTG 57.063 50.000 25.94 9.40 0.00 2.82
1929 2434 0.466922 ATGCACCTAGGAGCCATTGC 60.467 55.000 25.94 18.71 37.95 3.56
1930 2435 1.825622 GCACCTAGGAGCCATTGCC 60.826 63.158 19.57 0.00 38.69 4.52
1931 2436 1.609239 CACCTAGGAGCCATTGCCA 59.391 57.895 17.98 0.00 38.69 4.92
1932 2437 0.034186 CACCTAGGAGCCATTGCCAA 60.034 55.000 17.98 0.00 38.69 4.52
1933 2438 0.929244 ACCTAGGAGCCATTGCCAAT 59.071 50.000 17.98 0.00 38.69 3.16
1934 2439 1.288932 ACCTAGGAGCCATTGCCAATT 59.711 47.619 17.98 0.00 38.69 2.32
1935 2440 2.292455 ACCTAGGAGCCATTGCCAATTT 60.292 45.455 17.98 0.00 38.69 1.82
1936 2441 2.363359 CCTAGGAGCCATTGCCAATTTC 59.637 50.000 1.05 0.00 38.69 2.17
1937 2442 1.197812 AGGAGCCATTGCCAATTTCC 58.802 50.000 4.85 4.85 38.69 3.13
1938 2443 0.179103 GGAGCCATTGCCAATTTCCG 60.179 55.000 0.00 0.00 38.69 4.30
1939 2444 0.817013 GAGCCATTGCCAATTTCCGA 59.183 50.000 0.00 0.00 38.69 4.55
1940 2445 1.204467 GAGCCATTGCCAATTTCCGAA 59.796 47.619 0.00 0.00 38.69 4.30
1941 2446 1.832998 AGCCATTGCCAATTTCCGAAT 59.167 42.857 0.00 0.00 38.69 3.34
1942 2447 2.159057 AGCCATTGCCAATTTCCGAATC 60.159 45.455 0.00 0.00 38.69 2.52
1943 2448 2.159057 GCCATTGCCAATTTCCGAATCT 60.159 45.455 0.00 0.00 0.00 2.40
1968 2473 3.924073 TGACGCGCATATATATGGTTCAC 59.076 43.478 21.50 6.14 34.32 3.18
2196 2702 4.082408 GCTAAACTTCCCCGCAATTAAAGT 60.082 41.667 0.00 0.00 0.00 2.66
2279 2785 9.541884 ACAAAATTATATTAGTGGAGGTTTGGT 57.458 29.630 0.00 0.00 0.00 3.67
2308 2814 4.261405 CCAATTTCGTAAGCAAAGGTGTCA 60.261 41.667 0.00 0.00 37.18 3.58
2311 2817 2.489971 TCGTAAGCAAAGGTGTCAAGG 58.510 47.619 0.00 0.00 37.18 3.61
2317 2823 2.307098 AGCAAAGGTGTCAAGGATAGCT 59.693 45.455 0.00 0.00 33.23 3.32
2358 2864 1.493950 CGCGCAGGAGGATCAATGTC 61.494 60.000 8.75 0.00 36.25 3.06
2363 2869 2.801342 GCAGGAGGATCAATGTCTCGTC 60.801 54.545 0.00 1.67 36.25 4.20
2367 2873 1.827344 AGGATCAATGTCTCGTCAGCA 59.173 47.619 0.00 0.00 0.00 4.41
2372 2878 3.774066 TCAATGTCTCGTCAGCATACTG 58.226 45.455 0.00 0.00 45.95 2.74
2383 2889 4.686091 CGTCAGCATACTGTGAAGAAAGAA 59.314 41.667 0.00 0.00 44.77 2.52
2393 2899 4.923893 TGTGAAGAAAGAAGCAACACATG 58.076 39.130 0.00 0.00 33.04 3.21
2394 2900 4.202040 TGTGAAGAAAGAAGCAACACATGG 60.202 41.667 0.00 0.00 33.04 3.66
2395 2901 3.318839 TGAAGAAAGAAGCAACACATGGG 59.681 43.478 0.00 0.00 0.00 4.00
2396 2902 2.242043 AGAAAGAAGCAACACATGGGG 58.758 47.619 0.00 0.00 0.00 4.96
2397 2903 2.158475 AGAAAGAAGCAACACATGGGGA 60.158 45.455 0.00 0.00 0.00 4.81
2398 2904 2.380064 AAGAAGCAACACATGGGGAA 57.620 45.000 0.00 0.00 0.00 3.97
2399 2905 2.380064 AGAAGCAACACATGGGGAAA 57.620 45.000 0.00 0.00 0.00 3.13
2400 2906 2.893424 AGAAGCAACACATGGGGAAAT 58.107 42.857 0.00 0.00 0.00 2.17
2401 2907 4.046286 AGAAGCAACACATGGGGAAATA 57.954 40.909 0.00 0.00 0.00 1.40
2402 2908 3.763897 AGAAGCAACACATGGGGAAATAC 59.236 43.478 0.00 0.00 0.00 1.89
2403 2909 2.456577 AGCAACACATGGGGAAATACC 58.543 47.619 0.00 0.00 38.08 2.73
2416 2922 3.031013 GGAAATACCCAATGGTTCCTGG 58.969 50.000 10.99 0.00 44.75 4.45
2420 2926 4.764143 CCAATGGTTCCTGGGGAC 57.236 61.111 0.00 0.00 0.00 4.46
2421 2927 1.773635 CCAATGGTTCCTGGGGACA 59.226 57.895 0.08 0.00 39.59 4.02
2422 2928 0.336048 CCAATGGTTCCTGGGGACAT 59.664 55.000 0.08 0.00 41.51 3.06
2423 2929 1.686115 CCAATGGTTCCTGGGGACATC 60.686 57.143 0.08 0.00 41.51 3.06
2424 2930 1.285962 CAATGGTTCCTGGGGACATCT 59.714 52.381 0.08 0.00 41.51 2.90
2425 2931 0.921896 ATGGTTCCTGGGGACATCTG 59.078 55.000 0.08 0.00 41.51 2.90
2426 2932 0.475632 TGGTTCCTGGGGACATCTGT 60.476 55.000 0.08 0.00 41.51 3.41
2427 2933 0.253327 GGTTCCTGGGGACATCTGTC 59.747 60.000 1.59 1.59 44.04 3.51
2436 2942 3.688553 GACATCTGTCCCCGGAATC 57.311 57.895 0.73 0.00 39.07 2.52
2437 2943 1.123928 GACATCTGTCCCCGGAATCT 58.876 55.000 0.73 0.00 39.07 2.40
2438 2944 1.069358 GACATCTGTCCCCGGAATCTC 59.931 57.143 0.73 0.00 39.07 2.75
2439 2945 1.123077 CATCTGTCCCCGGAATCTCA 58.877 55.000 0.73 0.00 0.00 3.27
2440 2946 1.123928 ATCTGTCCCCGGAATCTCAC 58.876 55.000 0.73 0.00 0.00 3.51
2441 2947 0.976073 TCTGTCCCCGGAATCTCACC 60.976 60.000 0.73 0.00 0.00 4.02
2442 2948 1.229368 TGTCCCCGGAATCTCACCA 60.229 57.895 0.73 0.00 0.00 4.17
2443 2949 1.264749 TGTCCCCGGAATCTCACCAG 61.265 60.000 0.73 0.00 0.00 4.00
2444 2950 1.080354 TCCCCGGAATCTCACCAGT 59.920 57.895 0.73 0.00 0.00 4.00
2445 2951 0.976073 TCCCCGGAATCTCACCAGTC 60.976 60.000 0.73 0.00 0.00 3.51
2446 2952 1.264749 CCCCGGAATCTCACCAGTCA 61.265 60.000 0.73 0.00 0.00 3.41
2447 2953 0.833287 CCCGGAATCTCACCAGTCAT 59.167 55.000 0.73 0.00 0.00 3.06
2448 2954 1.202580 CCCGGAATCTCACCAGTCATC 60.203 57.143 0.73 0.00 0.00 2.92
2449 2955 1.202580 CCGGAATCTCACCAGTCATCC 60.203 57.143 0.00 0.00 0.00 3.51
2450 2956 1.536922 CGGAATCTCACCAGTCATCCG 60.537 57.143 0.00 0.00 41.81 4.18
2451 2957 1.576356 GAATCTCACCAGTCATCCGC 58.424 55.000 0.00 0.00 0.00 5.54
2452 2958 0.904649 AATCTCACCAGTCATCCGCA 59.095 50.000 0.00 0.00 0.00 5.69
2453 2959 0.176680 ATCTCACCAGTCATCCGCAC 59.823 55.000 0.00 0.00 0.00 5.34
2454 2960 0.900182 TCTCACCAGTCATCCGCACT 60.900 55.000 0.00 0.00 0.00 4.40
2455 2961 0.738762 CTCACCAGTCATCCGCACTG 60.739 60.000 0.00 0.00 40.96 3.66
2458 2964 2.821366 CAGTCATCCGCACTGGCC 60.821 66.667 0.00 0.00 38.10 5.36
2459 2965 3.005539 AGTCATCCGCACTGGCCT 61.006 61.111 3.32 0.00 37.80 5.19
2460 2966 1.685765 AGTCATCCGCACTGGCCTA 60.686 57.895 3.32 0.00 37.80 3.93
2461 2967 1.050988 AGTCATCCGCACTGGCCTAT 61.051 55.000 3.32 0.00 37.80 2.57
2462 2968 0.179045 GTCATCCGCACTGGCCTATT 60.179 55.000 3.32 0.00 37.80 1.73
2463 2969 1.070134 GTCATCCGCACTGGCCTATTA 59.930 52.381 3.32 0.00 37.80 0.98
2464 2970 1.344438 TCATCCGCACTGGCCTATTAG 59.656 52.381 3.32 0.00 37.80 1.73
2465 2971 1.070758 CATCCGCACTGGCCTATTAGT 59.929 52.381 3.32 0.00 37.80 2.24
2466 2972 2.076207 TCCGCACTGGCCTATTAGTA 57.924 50.000 3.32 0.00 37.80 1.82
2467 2973 2.605257 TCCGCACTGGCCTATTAGTAT 58.395 47.619 3.32 0.00 37.80 2.12
2468 2974 3.770046 TCCGCACTGGCCTATTAGTATA 58.230 45.455 3.32 0.00 37.80 1.47
2469 2975 3.762288 TCCGCACTGGCCTATTAGTATAG 59.238 47.826 3.32 0.00 37.80 1.31
2470 2976 3.510360 CCGCACTGGCCTATTAGTATAGT 59.490 47.826 3.32 0.00 36.38 2.12
2471 2977 4.380655 CCGCACTGGCCTATTAGTATAGTC 60.381 50.000 3.32 0.00 36.38 2.59
2472 2978 4.459685 CGCACTGGCCTATTAGTATAGTCT 59.540 45.833 3.32 0.00 36.38 3.24
2473 2979 5.620205 CGCACTGGCCTATTAGTATAGTCTG 60.620 48.000 3.32 0.00 36.38 3.51
2474 2980 5.244178 GCACTGGCCTATTAGTATAGTCTGT 59.756 44.000 3.32 0.00 33.29 3.41
2475 2981 6.570764 GCACTGGCCTATTAGTATAGTCTGTC 60.571 46.154 3.32 0.00 33.29 3.51
2476 2982 6.011481 ACTGGCCTATTAGTATAGTCTGTCC 58.989 44.000 3.32 0.00 33.29 4.02
2477 2983 6.183361 ACTGGCCTATTAGTATAGTCTGTCCT 60.183 42.308 3.32 0.00 33.29 3.85
2478 2984 6.246919 TGGCCTATTAGTATAGTCTGTCCTC 58.753 44.000 3.32 0.00 33.29 3.71
2479 2985 6.045695 TGGCCTATTAGTATAGTCTGTCCTCT 59.954 42.308 3.32 0.00 33.29 3.69
2480 2986 6.600427 GGCCTATTAGTATAGTCTGTCCTCTC 59.400 46.154 0.00 0.00 33.29 3.20
2481 2987 6.314400 GCCTATTAGTATAGTCTGTCCTCTCG 59.686 46.154 0.00 0.00 33.29 4.04
2482 2988 7.388437 CCTATTAGTATAGTCTGTCCTCTCGT 58.612 42.308 0.00 0.00 33.29 4.18
2483 2989 7.879160 CCTATTAGTATAGTCTGTCCTCTCGTT 59.121 40.741 0.00 0.00 33.29 3.85
2484 2990 9.275398 CTATTAGTATAGTCTGTCCTCTCGTTT 57.725 37.037 0.00 0.00 31.00 3.60
2485 2991 7.934855 TTAGTATAGTCTGTCCTCTCGTTTT 57.065 36.000 0.00 0.00 0.00 2.43
2486 2992 6.197364 AGTATAGTCTGTCCTCTCGTTTTG 57.803 41.667 0.00 0.00 0.00 2.44
2487 2993 5.711036 AGTATAGTCTGTCCTCTCGTTTTGT 59.289 40.000 0.00 0.00 0.00 2.83
2488 2994 6.883217 AGTATAGTCTGTCCTCTCGTTTTGTA 59.117 38.462 0.00 0.00 0.00 2.41
2489 2995 6.777213 ATAGTCTGTCCTCTCGTTTTGTAT 57.223 37.500 0.00 0.00 0.00 2.29
2490 2996 5.470047 AGTCTGTCCTCTCGTTTTGTATT 57.530 39.130 0.00 0.00 0.00 1.89
2491 2997 5.855045 AGTCTGTCCTCTCGTTTTGTATTT 58.145 37.500 0.00 0.00 0.00 1.40
2492 2998 5.927115 AGTCTGTCCTCTCGTTTTGTATTTC 59.073 40.000 0.00 0.00 0.00 2.17
2493 2999 4.921515 TCTGTCCTCTCGTTTTGTATTTCG 59.078 41.667 0.00 0.00 0.00 3.46
2494 3000 4.873817 TGTCCTCTCGTTTTGTATTTCGA 58.126 39.130 0.00 0.00 0.00 3.71
2495 3001 5.475719 TGTCCTCTCGTTTTGTATTTCGAT 58.524 37.500 0.00 0.00 0.00 3.59
2496 3002 5.347635 TGTCCTCTCGTTTTGTATTTCGATG 59.652 40.000 0.00 0.00 0.00 3.84
2497 3003 5.347907 GTCCTCTCGTTTTGTATTTCGATGT 59.652 40.000 0.00 0.00 0.00 3.06
2498 3004 5.929992 TCCTCTCGTTTTGTATTTCGATGTT 59.070 36.000 0.00 0.00 0.00 2.71
2499 3005 6.090358 TCCTCTCGTTTTGTATTTCGATGTTC 59.910 38.462 0.00 0.00 0.00 3.18
2500 3006 6.090898 CCTCTCGTTTTGTATTTCGATGTTCT 59.909 38.462 0.00 0.00 0.00 3.01
2501 3007 7.360101 CCTCTCGTTTTGTATTTCGATGTTCTT 60.360 37.037 0.00 0.00 0.00 2.52
2502 3008 7.857569 TCTCGTTTTGTATTTCGATGTTCTTT 58.142 30.769 0.00 0.00 0.00 2.52
2503 3009 7.796660 TCTCGTTTTGTATTTCGATGTTCTTTG 59.203 33.333 0.00 0.00 0.00 2.77
2504 3010 6.358558 TCGTTTTGTATTTCGATGTTCTTTGC 59.641 34.615 0.00 0.00 0.00 3.68
2505 3011 6.141527 CGTTTTGTATTTCGATGTTCTTTGCA 59.858 34.615 0.00 0.00 0.00 4.08
2506 3012 7.148983 CGTTTTGTATTTCGATGTTCTTTGCAT 60.149 33.333 0.00 0.00 0.00 3.96
2507 3013 7.795431 TTTGTATTTCGATGTTCTTTGCATC 57.205 32.000 0.00 0.00 39.32 3.91
2508 3014 6.493449 TGTATTTCGATGTTCTTTGCATCA 57.507 33.333 6.18 0.00 41.91 3.07
2509 3015 6.545508 TGTATTTCGATGTTCTTTGCATCAG 58.454 36.000 6.18 0.00 41.91 2.90
2510 3016 3.476295 TTCGATGTTCTTTGCATCAGC 57.524 42.857 6.18 0.00 41.91 4.26
2526 3032 6.956299 GCATCAGCAGTTTTTGTATTTGAT 57.044 33.333 0.00 0.00 41.58 2.57
2527 3033 7.355332 GCATCAGCAGTTTTTGTATTTGATT 57.645 32.000 0.00 0.00 41.58 2.57
2528 3034 7.450627 GCATCAGCAGTTTTTGTATTTGATTC 58.549 34.615 0.00 0.00 41.58 2.52
2529 3035 7.412237 GCATCAGCAGTTTTTGTATTTGATTCC 60.412 37.037 0.00 0.00 41.58 3.01
2530 3036 7.288810 TCAGCAGTTTTTGTATTTGATTCCT 57.711 32.000 0.00 0.00 0.00 3.36
2531 3037 7.725251 TCAGCAGTTTTTGTATTTGATTCCTT 58.275 30.769 0.00 0.00 0.00 3.36
2532 3038 7.867403 TCAGCAGTTTTTGTATTTGATTCCTTC 59.133 33.333 0.00 0.00 0.00 3.46
2533 3039 7.652909 CAGCAGTTTTTGTATTTGATTCCTTCA 59.347 33.333 0.00 0.00 0.00 3.02
2534 3040 7.869429 AGCAGTTTTTGTATTTGATTCCTTCAG 59.131 33.333 0.00 0.00 35.27 3.02
2535 3041 7.867403 GCAGTTTTTGTATTTGATTCCTTCAGA 59.133 33.333 0.00 0.00 35.27 3.27
2536 3042 9.185192 CAGTTTTTGTATTTGATTCCTTCAGAC 57.815 33.333 0.00 0.00 35.27 3.51
2537 3043 8.360390 AGTTTTTGTATTTGATTCCTTCAGACC 58.640 33.333 0.00 0.00 35.27 3.85
2538 3044 8.360390 GTTTTTGTATTTGATTCCTTCAGACCT 58.640 33.333 0.00 0.00 35.27 3.85
2539 3045 7.452880 TTTGTATTTGATTCCTTCAGACCTG 57.547 36.000 0.00 0.00 35.27 4.00
2540 3046 6.126863 TGTATTTGATTCCTTCAGACCTGT 57.873 37.500 0.00 0.00 35.27 4.00
2541 3047 6.542821 TGTATTTGATTCCTTCAGACCTGTT 58.457 36.000 0.00 0.00 35.27 3.16
2542 3048 6.655003 TGTATTTGATTCCTTCAGACCTGTTC 59.345 38.462 0.00 0.00 35.27 3.18
2543 3049 3.703001 TGATTCCTTCAGACCTGTTCC 57.297 47.619 0.00 0.00 0.00 3.62
2544 3050 2.978978 TGATTCCTTCAGACCTGTTCCA 59.021 45.455 0.00 0.00 0.00 3.53
2545 3051 2.930826 TTCCTTCAGACCTGTTCCAC 57.069 50.000 0.00 0.00 0.00 4.02
2546 3052 1.801242 TCCTTCAGACCTGTTCCACA 58.199 50.000 0.00 0.00 0.00 4.17
2547 3053 2.338809 TCCTTCAGACCTGTTCCACAT 58.661 47.619 0.00 0.00 0.00 3.21
2548 3054 2.038952 TCCTTCAGACCTGTTCCACATG 59.961 50.000 0.00 0.00 0.00 3.21
2549 3055 1.808945 CTTCAGACCTGTTCCACATGC 59.191 52.381 0.00 0.00 0.00 4.06
2550 3056 1.059098 TCAGACCTGTTCCACATGCT 58.941 50.000 0.00 0.00 0.00 3.79
2551 3057 1.162698 CAGACCTGTTCCACATGCTG 58.837 55.000 0.00 0.00 0.00 4.41
2552 3058 0.767375 AGACCTGTTCCACATGCTGT 59.233 50.000 0.00 0.00 0.00 4.40
2553 3059 1.160137 GACCTGTTCCACATGCTGTC 58.840 55.000 0.00 0.00 0.00 3.51
2554 3060 0.250901 ACCTGTTCCACATGCTGTCC 60.251 55.000 0.00 0.00 0.00 4.02
2555 3061 0.962356 CCTGTTCCACATGCTGTCCC 60.962 60.000 0.00 0.00 0.00 4.46
2556 3062 0.250858 CTGTTCCACATGCTGTCCCA 60.251 55.000 0.00 0.00 0.00 4.37
2557 3063 0.537143 TGTTCCACATGCTGTCCCAC 60.537 55.000 0.00 0.00 0.00 4.61
2558 3064 0.537143 GTTCCACATGCTGTCCCACA 60.537 55.000 0.00 0.00 0.00 4.17
2559 3065 0.537143 TTCCACATGCTGTCCCACAC 60.537 55.000 0.00 0.00 0.00 3.82
2560 3066 1.073722 CCACATGCTGTCCCACACT 59.926 57.895 0.00 0.00 0.00 3.55
2561 3067 0.957395 CCACATGCTGTCCCACACTC 60.957 60.000 0.00 0.00 0.00 3.51
2562 3068 0.250424 CACATGCTGTCCCACACTCA 60.250 55.000 0.00 0.00 0.00 3.41
2563 3069 0.694771 ACATGCTGTCCCACACTCAT 59.305 50.000 0.00 0.00 0.00 2.90
2564 3070 1.074405 ACATGCTGTCCCACACTCATT 59.926 47.619 0.00 0.00 0.00 2.57
2565 3071 2.165167 CATGCTGTCCCACACTCATTT 58.835 47.619 0.00 0.00 0.00 2.32
2566 3072 3.244875 ACATGCTGTCCCACACTCATTTA 60.245 43.478 0.00 0.00 0.00 1.40
2567 3073 2.778299 TGCTGTCCCACACTCATTTAC 58.222 47.619 0.00 0.00 0.00 2.01
2568 3074 2.084546 GCTGTCCCACACTCATTTACC 58.915 52.381 0.00 0.00 0.00 2.85
2569 3075 2.711542 CTGTCCCACACTCATTTACCC 58.288 52.381 0.00 0.00 0.00 3.69
2570 3076 2.039746 CTGTCCCACACTCATTTACCCA 59.960 50.000 0.00 0.00 0.00 4.51
2571 3077 2.039746 TGTCCCACACTCATTTACCCAG 59.960 50.000 0.00 0.00 0.00 4.45
2572 3078 1.004277 TCCCACACTCATTTACCCAGC 59.996 52.381 0.00 0.00 0.00 4.85
2573 3079 1.004745 CCCACACTCATTTACCCAGCT 59.995 52.381 0.00 0.00 0.00 4.24
2574 3080 2.238646 CCCACACTCATTTACCCAGCTA 59.761 50.000 0.00 0.00 0.00 3.32
2575 3081 3.270877 CCACACTCATTTACCCAGCTAC 58.729 50.000 0.00 0.00 0.00 3.58
2576 3082 3.055094 CCACACTCATTTACCCAGCTACT 60.055 47.826 0.00 0.00 0.00 2.57
2577 3083 4.565652 CCACACTCATTTACCCAGCTACTT 60.566 45.833 0.00 0.00 0.00 2.24
2578 3084 5.338056 CCACACTCATTTACCCAGCTACTTA 60.338 44.000 0.00 0.00 0.00 2.24
2579 3085 5.581085 CACACTCATTTACCCAGCTACTTAC 59.419 44.000 0.00 0.00 0.00 2.34
2580 3086 5.484290 ACACTCATTTACCCAGCTACTTACT 59.516 40.000 0.00 0.00 0.00 2.24
2581 3087 6.043411 CACTCATTTACCCAGCTACTTACTC 58.957 44.000 0.00 0.00 0.00 2.59
2582 3088 5.128991 ACTCATTTACCCAGCTACTTACTCC 59.871 44.000 0.00 0.00 0.00 3.85
2583 3089 4.407945 TCATTTACCCAGCTACTTACTCCC 59.592 45.833 0.00 0.00 0.00 4.30
2584 3090 2.466547 TACCCAGCTACTTACTCCCC 57.533 55.000 0.00 0.00 0.00 4.81
2585 3091 0.416231 ACCCAGCTACTTACTCCCCA 59.584 55.000 0.00 0.00 0.00 4.96
2586 3092 1.203389 ACCCAGCTACTTACTCCCCAA 60.203 52.381 0.00 0.00 0.00 4.12
2587 3093 1.209747 CCCAGCTACTTACTCCCCAAC 59.790 57.143 0.00 0.00 0.00 3.77
2588 3094 2.188817 CCAGCTACTTACTCCCCAACT 58.811 52.381 0.00 0.00 0.00 3.16
2589 3095 2.093447 CCAGCTACTTACTCCCCAACTG 60.093 54.545 0.00 0.00 0.00 3.16
2590 3096 2.567615 CAGCTACTTACTCCCCAACTGT 59.432 50.000 0.00 0.00 0.00 3.55
2591 3097 2.832733 AGCTACTTACTCCCCAACTGTC 59.167 50.000 0.00 0.00 0.00 3.51
2592 3098 2.093606 GCTACTTACTCCCCAACTGTCC 60.094 54.545 0.00 0.00 0.00 4.02
2593 3099 1.359168 ACTTACTCCCCAACTGTCCC 58.641 55.000 0.00 0.00 0.00 4.46
2594 3100 1.132495 ACTTACTCCCCAACTGTCCCT 60.132 52.381 0.00 0.00 0.00 4.20
2595 3101 1.279271 CTTACTCCCCAACTGTCCCTG 59.721 57.143 0.00 0.00 0.00 4.45
2596 3102 0.490017 TACTCCCCAACTGTCCCTGA 59.510 55.000 0.00 0.00 0.00 3.86
2597 3103 1.128188 ACTCCCCAACTGTCCCTGAC 61.128 60.000 0.00 0.00 0.00 3.51
2598 3104 2.172483 CTCCCCAACTGTCCCTGACG 62.172 65.000 0.00 0.00 34.95 4.35
2599 3105 2.516888 CCCCAACTGTCCCTGACGT 61.517 63.158 0.00 0.00 34.95 4.34
2600 3106 1.450211 CCCAACTGTCCCTGACGTT 59.550 57.895 0.00 0.00 34.95 3.99
2601 3107 0.602905 CCCAACTGTCCCTGACGTTC 60.603 60.000 0.00 0.00 34.95 3.95
2602 3108 0.105964 CCAACTGTCCCTGACGTTCA 59.894 55.000 0.00 0.00 34.95 3.18
2603 3109 1.270839 CCAACTGTCCCTGACGTTCAT 60.271 52.381 0.00 0.00 34.95 2.57
2604 3110 2.069273 CAACTGTCCCTGACGTTCATC 58.931 52.381 0.00 0.00 34.95 2.92
2605 3111 0.243907 ACTGTCCCTGACGTTCATCG 59.756 55.000 0.00 0.00 46.00 3.84
2606 3112 1.078759 CTGTCCCTGACGTTCATCGC 61.079 60.000 0.00 0.00 44.19 4.58
2607 3113 1.080093 GTCCCTGACGTTCATCGCA 60.080 57.895 0.00 0.00 44.19 5.10
2608 3114 1.078759 GTCCCTGACGTTCATCGCAG 61.079 60.000 0.00 0.00 44.19 5.18
2609 3115 1.079819 CCCTGACGTTCATCGCAGT 60.080 57.895 0.00 0.00 44.19 4.40
2610 3116 1.354337 CCCTGACGTTCATCGCAGTG 61.354 60.000 0.00 0.00 44.19 3.66
2611 3117 1.417592 CTGACGTTCATCGCAGTGC 59.582 57.895 4.58 4.58 44.19 4.40
2612 3118 1.284297 CTGACGTTCATCGCAGTGCA 61.284 55.000 16.83 2.61 44.19 4.57
2613 3119 0.878086 TGACGTTCATCGCAGTGCAA 60.878 50.000 16.83 0.00 44.19 4.08
2614 3120 0.234625 GACGTTCATCGCAGTGCAAA 59.765 50.000 16.83 2.36 44.19 3.68
2615 3121 0.235665 ACGTTCATCGCAGTGCAAAG 59.764 50.000 16.83 6.61 44.19 2.77
2616 3122 1.061799 CGTTCATCGCAGTGCAAAGC 61.062 55.000 16.83 0.00 0.00 3.51
2622 3128 4.017877 GCAGTGCAAAGCGCGTCT 62.018 61.111 11.09 1.94 46.97 4.18
2623 3129 2.667318 GCAGTGCAAAGCGCGTCTA 61.667 57.895 11.09 0.00 46.97 2.59
2624 3130 1.417592 CAGTGCAAAGCGCGTCTAG 59.582 57.895 8.43 3.48 46.97 2.43
2625 3131 2.096594 GTGCAAAGCGCGTCTAGC 59.903 61.111 8.43 13.30 46.97 3.42
2627 3133 1.076533 GTGCAAAGCGCGTCTAGCTA 61.077 55.000 8.43 0.00 45.31 3.32
2628 3134 1.076533 TGCAAAGCGCGTCTAGCTAC 61.077 55.000 8.43 0.00 45.31 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 8.250332 GTGGGCAAAAGTTATTTCATAGATCAA 58.750 33.333 0.00 0.00 0.00 2.57
23 24 3.632604 TCGTGTGGGCAAAAGTTATTTCA 59.367 39.130 0.00 0.00 0.00 2.69
34 35 1.686355 AGTTTGAATCGTGTGGGCAA 58.314 45.000 0.00 0.00 0.00 4.52
51 52 1.539065 CGTCTCTCAGCCAACACAAGT 60.539 52.381 0.00 0.00 0.00 3.16
104 105 3.134458 CCGACTGAGATTTAGCAATCCC 58.866 50.000 0.00 0.00 39.95 3.85
105 106 2.545946 GCCGACTGAGATTTAGCAATCC 59.454 50.000 0.00 0.00 39.95 3.01
132 133 9.919348 GTATAGAAACTACTCAGACTTCGTAAG 57.081 37.037 0.00 0.00 0.00 2.34
264 266 3.804036 TGGAGTATTTAGCAATCCCGTG 58.196 45.455 0.00 0.00 0.00 4.94
270 272 9.851686 TCTTTACATCATGGAGTATTTAGCAAT 57.148 29.630 0.00 0.00 0.00 3.56
289 291 6.934083 TCATGAAGCACATACAAGTCTTTACA 59.066 34.615 0.00 0.00 37.46 2.41
294 296 7.503549 TCATATCATGAAGCACATACAAGTCT 58.496 34.615 0.00 0.00 37.46 3.24
316 318 5.648178 TCTAGCACATGCAAATTGTTCAT 57.352 34.783 6.64 0.00 45.16 2.57
321 323 8.470040 ACTATTTTTCTAGCACATGCAAATTG 57.530 30.769 6.64 6.57 45.16 2.32
338 340 6.665248 AGTAGGACGGTGGTAGTACTATTTTT 59.335 38.462 5.75 0.00 37.37 1.94
353 355 4.876580 AGGGACTAATAAAGTAGGACGGT 58.123 43.478 0.00 0.00 39.07 4.83
469 471 7.849026 CACGAAAAATTATATCGTTGGATTCGT 59.151 33.333 9.54 0.00 46.66 3.85
492 494 9.502145 ACTAACAAAATATTAATGCATGTCACG 57.498 29.630 0.00 0.00 0.00 4.35
559 561 7.866393 CCTACTACCTTCGTCATGGTTTATAAG 59.134 40.741 0.00 0.00 37.74 1.73
560 562 7.342799 ACCTACTACCTTCGTCATGGTTTATAA 59.657 37.037 0.00 0.00 37.74 0.98
567 569 4.205587 ACTACCTACTACCTTCGTCATGG 58.794 47.826 0.00 0.00 0.00 3.66
570 572 4.141620 CCCTACTACCTACTACCTTCGTCA 60.142 50.000 0.00 0.00 0.00 4.35
576 578 6.218522 AGTTACAACCCTACTACCTACTACCT 59.781 42.308 0.00 0.00 0.00 3.08
577 579 6.427441 AGTTACAACCCTACTACCTACTACC 58.573 44.000 0.00 0.00 0.00 3.18
578 580 9.634021 AATAGTTACAACCCTACTACCTACTAC 57.366 37.037 0.00 0.00 0.00 2.73
629 631 1.071471 CGGTGACAGCCAGGAAGTT 59.929 57.895 0.00 0.00 0.00 2.66
636 638 2.425592 CCTTGTCGGTGACAGCCA 59.574 61.111 0.00 0.00 43.69 4.75
669 671 1.519751 CCGCTATCGACTCTCCCCTG 61.520 65.000 0.00 0.00 38.10 4.45
769 771 5.818857 TCAAGTTTAGCGGAAGTACAAAACT 59.181 36.000 0.00 0.00 41.49 2.66
841 844 7.437862 GTGTCTGGTGAAAAATTAAATGCAAGA 59.562 33.333 0.00 0.00 0.00 3.02
842 845 7.307337 GGTGTCTGGTGAAAAATTAAATGCAAG 60.307 37.037 0.00 0.00 0.00 4.01
880 883 3.168035 TCTGGTGCACCCAAACATTAT 57.832 42.857 32.62 0.00 44.65 1.28
1304 1798 1.956170 AGCAAACAGACCAGTCGCG 60.956 57.895 0.00 0.00 34.09 5.87
1310 1804 2.390306 TAGCCGCAGCAAACAGACCA 62.390 55.000 0.00 0.00 43.56 4.02
1485 1982 2.280708 ACGCAGCGTATCGTAAATGAAC 59.719 45.455 21.52 0.00 38.73 3.18
1556 2061 0.881118 AGCCAAAACACCGTATGCAG 59.119 50.000 0.00 0.00 0.00 4.41
1563 2068 1.535462 CACCTAAGAGCCAAAACACCG 59.465 52.381 0.00 0.00 0.00 4.94
1564 2069 1.269723 GCACCTAAGAGCCAAAACACC 59.730 52.381 0.00 0.00 0.00 4.16
1565 2070 1.953686 TGCACCTAAGAGCCAAAACAC 59.046 47.619 0.00 0.00 0.00 3.32
1566 2071 2.356665 TGCACCTAAGAGCCAAAACA 57.643 45.000 0.00 0.00 0.00 2.83
1567 2072 4.399303 ACATATGCACCTAAGAGCCAAAAC 59.601 41.667 1.58 0.00 0.00 2.43
1568 2073 4.599041 ACATATGCACCTAAGAGCCAAAA 58.401 39.130 1.58 0.00 0.00 2.44
1570 2075 3.931907 ACATATGCACCTAAGAGCCAA 57.068 42.857 1.58 0.00 0.00 4.52
1571 2076 3.071023 GGTACATATGCACCTAAGAGCCA 59.929 47.826 16.71 0.00 0.00 4.75
1572 2077 3.557264 GGGTACATATGCACCTAAGAGCC 60.557 52.174 21.91 2.86 35.04 4.70
1573 2078 3.071023 TGGGTACATATGCACCTAAGAGC 59.929 47.826 21.91 7.31 35.04 4.09
1574 2079 4.955811 TGGGTACATATGCACCTAAGAG 57.044 45.455 21.91 0.00 35.04 2.85
1575 2080 4.041567 CCATGGGTACATATGCACCTAAGA 59.958 45.833 21.91 7.00 34.99 2.10
1576 2081 4.202461 ACCATGGGTACATATGCACCTAAG 60.202 45.833 21.91 14.30 34.99 2.18
1577 2082 3.719479 ACCATGGGTACATATGCACCTAA 59.281 43.478 21.91 12.73 34.99 2.69
1578 2083 3.322862 ACCATGGGTACATATGCACCTA 58.677 45.455 21.91 17.75 34.99 3.08
1579 2084 2.106511 GACCATGGGTACATATGCACCT 59.893 50.000 21.91 4.49 35.25 4.00
1580 2085 2.106511 AGACCATGGGTACATATGCACC 59.893 50.000 18.09 15.84 35.25 5.01
1581 2086 3.492102 AGACCATGGGTACATATGCAC 57.508 47.619 18.09 0.00 35.25 4.57
1582 2087 5.638530 TTTAGACCATGGGTACATATGCA 57.361 39.130 18.09 0.00 35.25 3.96
1583 2088 9.326413 GTATATTTAGACCATGGGTACATATGC 57.674 37.037 18.09 13.71 35.25 3.14
1591 2096 9.707957 TTCAAAATGTATATTTAGACCATGGGT 57.292 29.630 18.09 5.30 35.41 4.51
1625 2130 5.973158 CGCAGGATTTTTGTTTCGAATTTT 58.027 33.333 0.00 0.00 0.00 1.82
1648 2153 7.050970 TGCATATAGAATGTCCGGATATACC 57.949 40.000 14.71 9.45 0.00 2.73
1649 2154 8.144478 ACATGCATATAGAATGTCCGGATATAC 58.856 37.037 14.71 0.00 43.31 1.47
1650 2155 8.250143 ACATGCATATAGAATGTCCGGATATA 57.750 34.615 14.71 9.01 43.31 0.86
1651 2156 7.129457 ACATGCATATAGAATGTCCGGATAT 57.871 36.000 7.81 7.95 43.31 1.63
1652 2157 6.544928 ACATGCATATAGAATGTCCGGATA 57.455 37.500 7.81 4.93 43.31 2.59
1653 2158 5.426689 ACATGCATATAGAATGTCCGGAT 57.573 39.130 7.81 0.00 43.31 4.18
1654 2159 4.890158 ACATGCATATAGAATGTCCGGA 57.110 40.909 0.00 0.00 43.31 5.14
1655 2160 5.478407 TGTACATGCATATAGAATGTCCGG 58.522 41.667 0.00 0.00 43.31 5.14
1656 2161 7.420184 TTTGTACATGCATATAGAATGTCCG 57.580 36.000 0.00 0.00 43.31 4.79
1661 2166 9.985730 CCCAAATTTTGTACATGCATATAGAAT 57.014 29.630 0.00 0.00 0.00 2.40
1662 2167 8.976353 ACCCAAATTTTGTACATGCATATAGAA 58.024 29.630 0.00 0.00 0.00 2.10
1663 2168 8.412456 CACCCAAATTTTGTACATGCATATAGA 58.588 33.333 0.00 0.00 0.00 1.98
1664 2169 8.412456 TCACCCAAATTTTGTACATGCATATAG 58.588 33.333 0.00 0.00 0.00 1.31
1665 2170 8.298729 TCACCCAAATTTTGTACATGCATATA 57.701 30.769 0.00 0.00 0.00 0.86
1666 2171 7.180322 TCACCCAAATTTTGTACATGCATAT 57.820 32.000 0.00 0.00 0.00 1.78
1667 2172 6.596309 TCACCCAAATTTTGTACATGCATA 57.404 33.333 0.00 0.00 0.00 3.14
1668 2173 5.480642 TCACCCAAATTTTGTACATGCAT 57.519 34.783 8.26 0.00 0.00 3.96
1669 2174 4.944619 TCACCCAAATTTTGTACATGCA 57.055 36.364 8.26 0.00 0.00 3.96
1670 2175 6.610741 TTTTCACCCAAATTTTGTACATGC 57.389 33.333 8.26 0.00 0.00 4.06
1671 2176 7.010552 TCGTTTTTCACCCAAATTTTGTACATG 59.989 33.333 8.26 0.00 0.00 3.21
1672 2177 7.010645 GTCGTTTTTCACCCAAATTTTGTACAT 59.989 33.333 8.26 0.00 0.00 2.29
1673 2178 6.310711 GTCGTTTTTCACCCAAATTTTGTACA 59.689 34.615 8.26 0.00 0.00 2.90
1674 2179 6.506670 CGTCGTTTTTCACCCAAATTTTGTAC 60.507 38.462 8.26 0.00 0.00 2.90
1675 2180 5.515626 CGTCGTTTTTCACCCAAATTTTGTA 59.484 36.000 8.26 0.00 0.00 2.41
1676 2181 4.327627 CGTCGTTTTTCACCCAAATTTTGT 59.672 37.500 8.26 0.00 0.00 2.83
1677 2182 4.327627 ACGTCGTTTTTCACCCAAATTTTG 59.672 37.500 1.99 1.99 0.00 2.44
1678 2183 4.496360 ACGTCGTTTTTCACCCAAATTTT 58.504 34.783 0.00 0.00 0.00 1.82
1679 2184 4.112716 ACGTCGTTTTTCACCCAAATTT 57.887 36.364 0.00 0.00 0.00 1.82
1680 2185 3.786516 ACGTCGTTTTTCACCCAAATT 57.213 38.095 0.00 0.00 0.00 1.82
1681 2186 3.786516 AACGTCGTTTTTCACCCAAAT 57.213 38.095 4.40 0.00 0.00 2.32
1682 2187 3.572604 AAACGTCGTTTTTCACCCAAA 57.427 38.095 17.41 0.00 31.10 3.28
1683 2188 3.572604 AAAACGTCGTTTTTCACCCAA 57.427 38.095 26.23 0.00 42.11 4.12
1738 2243 9.399797 TCTGATGCTTCATTACAACTATTCATT 57.600 29.630 2.33 0.00 0.00 2.57
1739 2244 8.969260 TCTGATGCTTCATTACAACTATTCAT 57.031 30.769 2.33 0.00 0.00 2.57
1740 2245 8.791327 TTCTGATGCTTCATTACAACTATTCA 57.209 30.769 2.33 0.00 0.00 2.57
1744 2249 9.013229 ACAAATTCTGATGCTTCATTACAACTA 57.987 29.630 2.33 0.00 0.00 2.24
1745 2250 7.889469 ACAAATTCTGATGCTTCATTACAACT 58.111 30.769 2.33 0.00 0.00 3.16
1746 2251 8.025445 AGACAAATTCTGATGCTTCATTACAAC 58.975 33.333 2.33 0.00 31.12 3.32
1747 2252 8.114331 AGACAAATTCTGATGCTTCATTACAA 57.886 30.769 2.33 0.00 31.12 2.41
1748 2253 7.692460 AGACAAATTCTGATGCTTCATTACA 57.308 32.000 2.33 0.00 31.12 2.41
1749 2254 8.976986 AAAGACAAATTCTGATGCTTCATTAC 57.023 30.769 2.33 0.00 33.46 1.89
1750 2255 9.985730 AAAAAGACAAATTCTGATGCTTCATTA 57.014 25.926 2.33 0.00 33.46 1.90
1751 2256 8.897872 AAAAAGACAAATTCTGATGCTTCATT 57.102 26.923 2.33 0.00 33.46 2.57
1790 2295 6.483974 AGTTTTCGGTGAAAAACAAGGTTTTT 59.516 30.769 16.97 16.97 46.68 1.94
1791 2296 5.992829 AGTTTTCGGTGAAAAACAAGGTTTT 59.007 32.000 13.01 1.47 46.68 2.43
1792 2297 5.543714 AGTTTTCGGTGAAAAACAAGGTTT 58.456 33.333 13.01 0.00 46.68 3.27
1793 2298 5.142061 AGTTTTCGGTGAAAAACAAGGTT 57.858 34.783 13.01 0.00 46.68 3.50
1794 2299 4.794278 AGTTTTCGGTGAAAAACAAGGT 57.206 36.364 13.01 0.00 46.68 3.50
1795 2300 5.407084 ACAAAGTTTTCGGTGAAAAACAAGG 59.593 36.000 13.01 5.66 46.68 3.61
1796 2301 6.295857 CACAAAGTTTTCGGTGAAAAACAAG 58.704 36.000 13.01 6.20 46.68 3.16
1797 2302 5.177696 CCACAAAGTTTTCGGTGAAAAACAA 59.822 36.000 13.01 0.00 46.68 2.83
1798 2303 4.686554 CCACAAAGTTTTCGGTGAAAAACA 59.313 37.500 13.01 0.00 46.68 2.83
1799 2304 4.924462 TCCACAAAGTTTTCGGTGAAAAAC 59.076 37.500 6.31 4.01 42.09 2.43
1800 2305 4.924462 GTCCACAAAGTTTTCGGTGAAAAA 59.076 37.500 6.31 0.00 42.09 1.94
1801 2306 4.487019 GTCCACAAAGTTTTCGGTGAAAA 58.513 39.130 6.21 0.81 38.90 2.29
1802 2307 3.426426 CGTCCACAAAGTTTTCGGTGAAA 60.426 43.478 6.21 0.00 33.16 2.69
1803 2308 2.096174 CGTCCACAAAGTTTTCGGTGAA 59.904 45.455 6.21 0.00 33.16 3.18
1804 2309 1.666700 CGTCCACAAAGTTTTCGGTGA 59.333 47.619 6.21 0.00 33.16 4.02
1805 2310 1.858399 GCGTCCACAAAGTTTTCGGTG 60.858 52.381 1.01 0.00 0.00 4.94
1806 2311 0.379316 GCGTCCACAAAGTTTTCGGT 59.621 50.000 1.01 0.00 0.00 4.69
1807 2312 0.378962 TGCGTCCACAAAGTTTTCGG 59.621 50.000 0.00 0.00 0.00 4.30
1808 2313 1.462791 GTGCGTCCACAAAGTTTTCG 58.537 50.000 0.00 0.00 41.67 3.46
1818 2323 1.933853 GGACATTCTATGTGCGTCCAC 59.066 52.381 0.00 0.00 45.03 4.02
1819 2324 2.309528 GGACATTCTATGTGCGTCCA 57.690 50.000 0.00 0.00 45.03 4.02
1824 2329 4.814234 TGTATTTCCGGACATTCTATGTGC 59.186 41.667 8.70 0.00 45.03 4.57
1825 2330 5.815222 TGTGTATTTCCGGACATTCTATGTG 59.185 40.000 8.70 0.00 45.03 3.21
1827 2332 5.051039 CGTGTGTATTTCCGGACATTCTATG 60.051 44.000 8.70 0.12 0.00 2.23
1828 2333 5.047847 CGTGTGTATTTCCGGACATTCTAT 58.952 41.667 8.70 0.00 0.00 1.98
1829 2334 4.426416 CGTGTGTATTTCCGGACATTCTA 58.574 43.478 8.70 0.00 0.00 2.10
1830 2335 3.259064 CGTGTGTATTTCCGGACATTCT 58.741 45.455 8.70 0.00 0.00 2.40
1831 2336 2.350498 CCGTGTGTATTTCCGGACATTC 59.650 50.000 8.70 4.23 43.01 2.67
1832 2337 2.352388 CCGTGTGTATTTCCGGACATT 58.648 47.619 8.70 0.00 43.01 2.71
1833 2338 1.406341 CCCGTGTGTATTTCCGGACAT 60.406 52.381 1.83 5.82 43.01 3.06
1834 2339 0.037139 CCCGTGTGTATTTCCGGACA 60.037 55.000 1.83 0.00 43.01 4.02
1835 2340 0.247185 TCCCGTGTGTATTTCCGGAC 59.753 55.000 1.83 0.00 43.01 4.79
1836 2341 1.196911 ATCCCGTGTGTATTTCCGGA 58.803 50.000 0.00 0.00 43.01 5.14
1837 2342 2.032680 AATCCCGTGTGTATTTCCGG 57.967 50.000 0.00 0.00 40.12 5.14
1838 2343 4.162812 CAAAAATCCCGTGTGTATTTCCG 58.837 43.478 0.00 0.00 0.00 4.30
1839 2344 5.128992 ACAAAAATCCCGTGTGTATTTCC 57.871 39.130 0.00 0.00 0.00 3.13
1840 2345 5.341196 CGAACAAAAATCCCGTGTGTATTTC 59.659 40.000 0.00 0.00 0.00 2.17
1841 2346 5.216648 CGAACAAAAATCCCGTGTGTATTT 58.783 37.500 0.00 0.00 0.00 1.40
1842 2347 4.320641 CCGAACAAAAATCCCGTGTGTATT 60.321 41.667 0.00 0.00 0.00 1.89
1843 2348 3.189702 CCGAACAAAAATCCCGTGTGTAT 59.810 43.478 0.00 0.00 0.00 2.29
1844 2349 2.548904 CCGAACAAAAATCCCGTGTGTA 59.451 45.455 0.00 0.00 0.00 2.90
1845 2350 1.335496 CCGAACAAAAATCCCGTGTGT 59.665 47.619 0.00 0.00 0.00 3.72
1846 2351 1.604755 TCCGAACAAAAATCCCGTGTG 59.395 47.619 0.00 0.00 0.00 3.82
1847 2352 1.970092 TCCGAACAAAAATCCCGTGT 58.030 45.000 0.00 0.00 0.00 4.49
1848 2353 3.569250 ATTCCGAACAAAAATCCCGTG 57.431 42.857 0.00 0.00 0.00 4.94
1849 2354 4.594123 AAATTCCGAACAAAAATCCCGT 57.406 36.364 0.00 0.00 0.00 5.28
1850 2355 5.463724 TGAAAAATTCCGAACAAAAATCCCG 59.536 36.000 0.00 0.00 0.00 5.14
1851 2356 6.852858 TGAAAAATTCCGAACAAAAATCCC 57.147 33.333 0.00 0.00 0.00 3.85
1852 2357 7.915508 AGTTGAAAAATTCCGAACAAAAATCC 58.084 30.769 0.00 0.00 0.00 3.01
1853 2358 9.767684 AAAGTTGAAAAATTCCGAACAAAAATC 57.232 25.926 0.00 0.00 30.03 2.17
1855 2360 9.600646 GAAAAGTTGAAAAATTCCGAACAAAAA 57.399 25.926 0.00 0.00 30.03 1.94
1856 2361 8.774586 TGAAAAGTTGAAAAATTCCGAACAAAA 58.225 25.926 0.00 0.00 30.03 2.44
1857 2362 8.311650 TGAAAAGTTGAAAAATTCCGAACAAA 57.688 26.923 0.00 0.00 30.03 2.83
1858 2363 7.891183 TGAAAAGTTGAAAAATTCCGAACAA 57.109 28.000 0.00 0.00 30.03 2.83
1859 2364 7.891183 TTGAAAAGTTGAAAAATTCCGAACA 57.109 28.000 0.00 0.00 30.03 3.18
1860 2365 9.767684 ATTTTGAAAAGTTGAAAAATTCCGAAC 57.232 25.926 0.00 0.00 30.03 3.95
1861 2366 9.766277 CATTTTGAAAAGTTGAAAAATTCCGAA 57.234 25.926 0.00 0.00 30.03 4.30
1862 2367 8.940952 ACATTTTGAAAAGTTGAAAAATTCCGA 58.059 25.926 0.00 0.00 30.03 4.55
1863 2368 9.553418 AACATTTTGAAAAGTTGAAAAATTCCG 57.447 25.926 0.00 0.00 30.03 4.30
1887 2392 8.334632 GCATATGCACCCATTGTTTAAATAAAC 58.665 33.333 22.84 8.72 42.06 2.01
1888 2393 8.430801 GCATATGCACCCATTGTTTAAATAAA 57.569 30.769 22.84 0.00 41.59 1.40
1906 2411 0.397941 TGGCTCCTAGGTGCATATGC 59.602 55.000 31.19 21.09 42.50 3.14
1907 2412 3.079578 CAATGGCTCCTAGGTGCATATG 58.920 50.000 31.19 22.47 36.47 1.78
1908 2413 2.553904 GCAATGGCTCCTAGGTGCATAT 60.554 50.000 31.19 22.72 36.47 1.78
1909 2414 1.202806 GCAATGGCTCCTAGGTGCATA 60.203 52.381 31.19 21.70 36.47 3.14
1910 2415 0.466922 GCAATGGCTCCTAGGTGCAT 60.467 55.000 31.19 21.04 36.47 3.96
1911 2416 1.077501 GCAATGGCTCCTAGGTGCA 60.078 57.895 31.19 19.96 36.47 4.57
1912 2417 1.825622 GGCAATGGCTCCTAGGTGC 60.826 63.158 24.68 24.68 40.87 5.01
1913 2418 0.034186 TTGGCAATGGCTCCTAGGTG 60.034 55.000 9.08 7.68 40.87 4.00
1914 2419 0.929244 ATTGGCAATGGCTCCTAGGT 59.071 50.000 12.82 0.00 40.87 3.08
1915 2420 2.077687 AATTGGCAATGGCTCCTAGG 57.922 50.000 14.47 0.82 40.87 3.02
1916 2421 2.363359 GGAAATTGGCAATGGCTCCTAG 59.637 50.000 14.47 0.00 40.87 3.02
1917 2422 2.387757 GGAAATTGGCAATGGCTCCTA 58.612 47.619 14.47 0.00 40.87 2.94
1918 2423 1.197812 GGAAATTGGCAATGGCTCCT 58.802 50.000 14.47 0.00 40.87 3.69
1919 2424 0.179103 CGGAAATTGGCAATGGCTCC 60.179 55.000 14.47 17.49 40.87 4.70
1920 2425 0.817013 TCGGAAATTGGCAATGGCTC 59.183 50.000 14.47 10.59 40.87 4.70
1921 2426 1.265236 TTCGGAAATTGGCAATGGCT 58.735 45.000 14.47 1.24 40.87 4.75
1922 2427 2.159057 AGATTCGGAAATTGGCAATGGC 60.159 45.455 14.47 8.66 40.13 4.40
1923 2428 3.806625 AGATTCGGAAATTGGCAATGG 57.193 42.857 14.47 4.14 0.00 3.16
1924 2429 4.802039 CAGAAGATTCGGAAATTGGCAATG 59.198 41.667 14.47 0.89 0.00 2.82
1925 2430 4.706476 TCAGAAGATTCGGAAATTGGCAAT 59.294 37.500 6.96 6.96 0.00 3.56
1926 2431 4.078537 TCAGAAGATTCGGAAATTGGCAA 58.921 39.130 0.68 0.68 0.00 4.52
1927 2432 3.440173 GTCAGAAGATTCGGAAATTGGCA 59.560 43.478 0.00 0.00 33.35 4.92
1928 2433 3.485877 CGTCAGAAGATTCGGAAATTGGC 60.486 47.826 0.00 0.00 33.35 4.52
1929 2434 3.485877 GCGTCAGAAGATTCGGAAATTGG 60.486 47.826 0.00 0.00 33.35 3.16
1930 2435 3.674423 GCGTCAGAAGATTCGGAAATTG 58.326 45.455 0.00 0.00 33.35 2.32
1931 2436 2.348666 CGCGTCAGAAGATTCGGAAATT 59.651 45.455 0.00 0.00 33.35 1.82
1932 2437 1.927174 CGCGTCAGAAGATTCGGAAAT 59.073 47.619 0.00 0.00 33.35 2.17
1933 2438 1.346365 CGCGTCAGAAGATTCGGAAA 58.654 50.000 0.00 0.00 33.35 3.13
1934 2439 1.076533 GCGCGTCAGAAGATTCGGAA 61.077 55.000 8.43 0.00 33.35 4.30
1935 2440 1.516386 GCGCGTCAGAAGATTCGGA 60.516 57.895 8.43 0.00 0.00 4.55
1936 2441 1.148157 ATGCGCGTCAGAAGATTCGG 61.148 55.000 8.43 0.00 0.00 4.30
1937 2442 1.477105 TATGCGCGTCAGAAGATTCG 58.523 50.000 4.79 0.00 0.00 3.34
1938 2443 6.074623 CCATATATATGCGCGTCAGAAGATTC 60.075 42.308 16.08 0.00 32.40 2.52
1939 2444 5.750547 CCATATATATGCGCGTCAGAAGATT 59.249 40.000 16.08 0.00 32.40 2.40
1940 2445 5.163509 ACCATATATATGCGCGTCAGAAGAT 60.164 40.000 16.08 0.00 32.40 2.40
1941 2446 4.157840 ACCATATATATGCGCGTCAGAAGA 59.842 41.667 16.08 0.00 32.40 2.87
1942 2447 4.424626 ACCATATATATGCGCGTCAGAAG 58.575 43.478 16.08 2.74 32.40 2.85
1943 2448 4.450082 ACCATATATATGCGCGTCAGAA 57.550 40.909 16.08 0.00 32.40 3.02
2115 2620 7.014615 AGGGCAAATAATACATTTAGCTTCCAG 59.985 37.037 0.00 0.00 0.00 3.86
2137 2642 7.715249 AGATTTAACTTTTTCTTTTTCCAGGGC 59.285 33.333 0.00 0.00 0.00 5.19
2171 2677 3.423344 TTGCGGGGAAGTTTAGCAA 57.577 47.368 0.00 0.00 44.24 3.91
2210 2716 8.800231 TGAACACTATTGTGATTTCAAACATG 57.200 30.769 14.37 0.00 46.55 3.21
2212 2718 7.914871 CACTGAACACTATTGTGATTTCAAACA 59.085 33.333 14.37 0.00 46.55 2.83
2279 2785 2.499197 TGCTTACGAAATTGGTCTGCA 58.501 42.857 0.00 4.52 0.00 4.41
2308 2814 2.430332 GACTCACTGCAGAGCTATCCTT 59.570 50.000 23.35 0.00 39.26 3.36
2311 2817 2.799207 GCTGACTCACTGCAGAGCTATC 60.799 54.545 23.35 10.98 41.89 2.08
2317 2823 0.893727 TACGGCTGACTCACTGCAGA 60.894 55.000 23.35 0.00 43.62 4.26
2340 2846 0.179062 AGACATTGATCCTCCTGCGC 60.179 55.000 0.00 0.00 0.00 6.09
2358 2864 3.494045 TCTTCACAGTATGCTGACGAG 57.506 47.619 18.40 10.92 45.28 4.18
2367 2873 5.822519 TGTGTTGCTTCTTTCTTCACAGTAT 59.177 36.000 0.00 0.00 32.05 2.12
2372 2878 4.293415 CCATGTGTTGCTTCTTTCTTCAC 58.707 43.478 0.00 0.00 0.00 3.18
2383 2889 2.456577 GGTATTTCCCCATGTGTTGCT 58.543 47.619 0.00 0.00 0.00 3.91
2403 2909 0.336048 ATGTCCCCAGGAACCATTGG 59.664 55.000 0.00 0.00 31.38 3.16
2404 2910 1.285962 AGATGTCCCCAGGAACCATTG 59.714 52.381 0.00 0.00 31.38 2.82
2405 2911 1.285962 CAGATGTCCCCAGGAACCATT 59.714 52.381 0.00 0.00 31.38 3.16
2406 2912 0.921896 CAGATGTCCCCAGGAACCAT 59.078 55.000 0.00 0.00 31.38 3.55
2407 2913 0.475632 ACAGATGTCCCCAGGAACCA 60.476 55.000 0.00 0.00 31.38 3.67
2408 2914 0.253327 GACAGATGTCCCCAGGAACC 59.747 60.000 1.33 0.00 39.07 3.62
2409 2915 3.863407 GACAGATGTCCCCAGGAAC 57.137 57.895 1.33 0.00 39.07 3.62
2418 2924 1.069358 GAGATTCCGGGGACAGATGTC 59.931 57.143 0.00 4.33 44.04 3.06
2419 2925 1.123928 GAGATTCCGGGGACAGATGT 58.876 55.000 0.00 0.00 0.00 3.06
2420 2926 1.123077 TGAGATTCCGGGGACAGATG 58.877 55.000 0.00 0.00 0.00 2.90
2421 2927 1.123928 GTGAGATTCCGGGGACAGAT 58.876 55.000 0.00 0.00 0.00 2.90
2422 2928 0.976073 GGTGAGATTCCGGGGACAGA 60.976 60.000 0.00 0.00 0.00 3.41
2423 2929 1.264749 TGGTGAGATTCCGGGGACAG 61.265 60.000 0.00 0.00 0.00 3.51
2424 2930 1.229368 TGGTGAGATTCCGGGGACA 60.229 57.895 0.00 0.00 0.00 4.02
2425 2931 1.265454 ACTGGTGAGATTCCGGGGAC 61.265 60.000 0.00 0.00 35.79 4.46
2426 2932 0.976073 GACTGGTGAGATTCCGGGGA 60.976 60.000 0.00 0.00 35.79 4.81
2427 2933 1.264749 TGACTGGTGAGATTCCGGGG 61.265 60.000 0.00 0.00 35.79 5.73
2428 2934 0.833287 ATGACTGGTGAGATTCCGGG 59.167 55.000 0.00 0.00 35.79 5.73
2429 2935 1.202580 GGATGACTGGTGAGATTCCGG 60.203 57.143 0.00 0.00 37.36 5.14
2430 2936 1.536922 CGGATGACTGGTGAGATTCCG 60.537 57.143 0.00 0.00 38.71 4.30
2431 2937 1.808133 GCGGATGACTGGTGAGATTCC 60.808 57.143 0.00 0.00 0.00 3.01
2432 2938 1.134699 TGCGGATGACTGGTGAGATTC 60.135 52.381 0.00 0.00 0.00 2.52
2433 2939 0.904649 TGCGGATGACTGGTGAGATT 59.095 50.000 0.00 0.00 0.00 2.40
2434 2940 0.176680 GTGCGGATGACTGGTGAGAT 59.823 55.000 0.00 0.00 0.00 2.75
2435 2941 0.900182 AGTGCGGATGACTGGTGAGA 60.900 55.000 0.00 0.00 0.00 3.27
2436 2942 0.738762 CAGTGCGGATGACTGGTGAG 60.739 60.000 0.00 0.00 37.72 3.51
2437 2943 1.293179 CAGTGCGGATGACTGGTGA 59.707 57.895 0.00 0.00 37.72 4.02
2438 2944 3.880591 CAGTGCGGATGACTGGTG 58.119 61.111 0.00 0.00 37.72 4.17
2441 2947 1.960040 TAGGCCAGTGCGGATGACTG 61.960 60.000 5.01 0.00 40.55 3.51
2442 2948 1.050988 ATAGGCCAGTGCGGATGACT 61.051 55.000 5.01 0.00 38.85 3.41
2443 2949 0.179045 AATAGGCCAGTGCGGATGAC 60.179 55.000 5.01 0.00 38.85 3.06
2444 2950 1.344438 CTAATAGGCCAGTGCGGATGA 59.656 52.381 5.01 0.00 38.85 2.92
2445 2951 1.070758 ACTAATAGGCCAGTGCGGATG 59.929 52.381 5.01 0.00 38.85 3.51
2446 2952 1.424638 ACTAATAGGCCAGTGCGGAT 58.575 50.000 5.01 0.00 38.85 4.18
2447 2953 2.076207 TACTAATAGGCCAGTGCGGA 57.924 50.000 5.01 0.00 38.85 5.54
2448 2954 3.510360 ACTATACTAATAGGCCAGTGCGG 59.490 47.826 5.01 0.00 39.63 5.69
2449 2955 4.459685 AGACTATACTAATAGGCCAGTGCG 59.540 45.833 5.01 0.00 43.88 5.34
2450 2956 5.244178 ACAGACTATACTAATAGGCCAGTGC 59.756 44.000 5.01 0.00 43.88 4.40
2451 2957 6.071840 GGACAGACTATACTAATAGGCCAGTG 60.072 46.154 5.01 0.00 43.88 3.66
2452 2958 6.011481 GGACAGACTATACTAATAGGCCAGT 58.989 44.000 5.01 1.20 43.88 4.00
2453 2959 6.249951 AGGACAGACTATACTAATAGGCCAG 58.750 44.000 5.01 0.00 43.88 4.85
2454 2960 6.045695 AGAGGACAGACTATACTAATAGGCCA 59.954 42.308 5.01 0.00 43.88 5.36
2455 2961 6.486941 AGAGGACAGACTATACTAATAGGCC 58.513 44.000 0.00 0.00 43.88 5.19
2456 2962 6.314400 CGAGAGGACAGACTATACTAATAGGC 59.686 46.154 0.00 0.00 43.25 3.93
2457 2963 7.388437 ACGAGAGGACAGACTATACTAATAGG 58.612 42.308 0.00 0.00 39.63 2.57
2458 2964 8.836268 AACGAGAGGACAGACTATACTAATAG 57.164 38.462 0.00 0.00 40.90 1.73
2459 2965 9.624373 AAAACGAGAGGACAGACTATACTAATA 57.376 33.333 0.00 0.00 0.00 0.98
2460 2966 8.407064 CAAAACGAGAGGACAGACTATACTAAT 58.593 37.037 0.00 0.00 0.00 1.73
2461 2967 7.392673 ACAAAACGAGAGGACAGACTATACTAA 59.607 37.037 0.00 0.00 0.00 2.24
2462 2968 6.883217 ACAAAACGAGAGGACAGACTATACTA 59.117 38.462 0.00 0.00 0.00 1.82
2463 2969 5.711036 ACAAAACGAGAGGACAGACTATACT 59.289 40.000 0.00 0.00 0.00 2.12
2464 2970 5.952033 ACAAAACGAGAGGACAGACTATAC 58.048 41.667 0.00 0.00 0.00 1.47
2465 2971 7.876936 ATACAAAACGAGAGGACAGACTATA 57.123 36.000 0.00 0.00 0.00 1.31
2466 2972 6.777213 ATACAAAACGAGAGGACAGACTAT 57.223 37.500 0.00 0.00 0.00 2.12
2467 2973 6.585695 AATACAAAACGAGAGGACAGACTA 57.414 37.500 0.00 0.00 0.00 2.59
2468 2974 5.470047 AATACAAAACGAGAGGACAGACT 57.530 39.130 0.00 0.00 0.00 3.24
2469 2975 5.164080 CGAAATACAAAACGAGAGGACAGAC 60.164 44.000 0.00 0.00 0.00 3.51
2470 2976 4.921515 CGAAATACAAAACGAGAGGACAGA 59.078 41.667 0.00 0.00 0.00 3.41
2471 2977 4.921515 TCGAAATACAAAACGAGAGGACAG 59.078 41.667 0.00 0.00 0.00 3.51
2472 2978 4.873817 TCGAAATACAAAACGAGAGGACA 58.126 39.130 0.00 0.00 0.00 4.02
2473 2979 5.347907 ACATCGAAATACAAAACGAGAGGAC 59.652 40.000 0.00 0.00 38.12 3.85
2474 2980 5.475719 ACATCGAAATACAAAACGAGAGGA 58.524 37.500 0.00 0.00 38.12 3.71
2475 2981 5.779806 ACATCGAAATACAAAACGAGAGG 57.220 39.130 0.00 0.00 38.12 3.69
2476 2982 7.050281 AGAACATCGAAATACAAAACGAGAG 57.950 36.000 0.00 0.00 38.12 3.20
2477 2983 7.416154 AAGAACATCGAAATACAAAACGAGA 57.584 32.000 0.00 0.00 38.12 4.04
2478 2984 7.408290 GCAAAGAACATCGAAATACAAAACGAG 60.408 37.037 0.00 0.00 38.12 4.18
2479 2985 6.358558 GCAAAGAACATCGAAATACAAAACGA 59.641 34.615 0.00 0.00 39.01 3.85
2480 2986 6.141527 TGCAAAGAACATCGAAATACAAAACG 59.858 34.615 0.00 0.00 0.00 3.60
2481 2987 7.388290 TGCAAAGAACATCGAAATACAAAAC 57.612 32.000 0.00 0.00 0.00 2.43
2482 2988 7.864882 TGATGCAAAGAACATCGAAATACAAAA 59.135 29.630 0.00 0.00 45.61 2.44
2483 2989 7.366513 TGATGCAAAGAACATCGAAATACAAA 58.633 30.769 0.00 0.00 45.61 2.83
2484 2990 6.907741 TGATGCAAAGAACATCGAAATACAA 58.092 32.000 0.00 0.00 45.61 2.41
2485 2991 6.493449 TGATGCAAAGAACATCGAAATACA 57.507 33.333 0.00 0.00 45.61 2.29
2486 2992 5.453587 GCTGATGCAAAGAACATCGAAATAC 59.546 40.000 4.04 0.00 45.61 1.89
2487 2993 5.572211 GCTGATGCAAAGAACATCGAAATA 58.428 37.500 4.04 0.00 45.61 1.40
2488 2994 4.418392 GCTGATGCAAAGAACATCGAAAT 58.582 39.130 4.04 0.00 45.61 2.17
2489 2995 3.825308 GCTGATGCAAAGAACATCGAAA 58.175 40.909 4.04 0.00 45.61 3.46
2490 2996 3.476295 GCTGATGCAAAGAACATCGAA 57.524 42.857 4.04 0.00 45.61 3.71
2503 3009 6.956299 ATCAAATACAAAAACTGCTGATGC 57.044 33.333 0.00 0.00 40.20 3.91
2504 3010 7.816031 AGGAATCAAATACAAAAACTGCTGATG 59.184 33.333 0.00 0.00 0.00 3.07
2505 3011 7.899973 AGGAATCAAATACAAAAACTGCTGAT 58.100 30.769 0.00 0.00 0.00 2.90
2506 3012 7.288810 AGGAATCAAATACAAAAACTGCTGA 57.711 32.000 0.00 0.00 0.00 4.26
2507 3013 7.652909 TGAAGGAATCAAATACAAAAACTGCTG 59.347 33.333 0.00 0.00 34.30 4.41
2508 3014 7.725251 TGAAGGAATCAAATACAAAAACTGCT 58.275 30.769 0.00 0.00 34.30 4.24
2509 3015 7.867403 TCTGAAGGAATCAAATACAAAAACTGC 59.133 33.333 0.00 0.00 37.67 4.40
2510 3016 9.185192 GTCTGAAGGAATCAAATACAAAAACTG 57.815 33.333 0.00 0.00 37.67 3.16
2511 3017 8.360390 GGTCTGAAGGAATCAAATACAAAAACT 58.640 33.333 0.00 0.00 37.67 2.66
2512 3018 8.360390 AGGTCTGAAGGAATCAAATACAAAAAC 58.640 33.333 0.00 0.00 37.67 2.43
2513 3019 8.359642 CAGGTCTGAAGGAATCAAATACAAAAA 58.640 33.333 0.00 0.00 37.67 1.94
2514 3020 7.505585 ACAGGTCTGAAGGAATCAAATACAAAA 59.494 33.333 4.84 0.00 37.67 2.44
2515 3021 7.004086 ACAGGTCTGAAGGAATCAAATACAAA 58.996 34.615 4.84 0.00 37.67 2.83
2516 3022 6.542821 ACAGGTCTGAAGGAATCAAATACAA 58.457 36.000 4.84 0.00 37.67 2.41
2517 3023 6.126863 ACAGGTCTGAAGGAATCAAATACA 57.873 37.500 4.84 0.00 37.67 2.29
2518 3024 6.094186 GGAACAGGTCTGAAGGAATCAAATAC 59.906 42.308 4.84 0.00 37.67 1.89
2519 3025 6.180472 GGAACAGGTCTGAAGGAATCAAATA 58.820 40.000 4.84 0.00 37.67 1.40
2520 3026 5.012893 GGAACAGGTCTGAAGGAATCAAAT 58.987 41.667 4.84 0.00 37.67 2.32
2521 3027 4.141274 TGGAACAGGTCTGAAGGAATCAAA 60.141 41.667 4.84 0.00 37.67 2.69
2522 3028 3.394274 TGGAACAGGTCTGAAGGAATCAA 59.606 43.478 4.84 0.00 37.67 2.57
2523 3029 2.978978 TGGAACAGGTCTGAAGGAATCA 59.021 45.455 4.84 0.00 36.38 2.57
2524 3030 3.244561 TGTGGAACAGGTCTGAAGGAATC 60.245 47.826 4.84 0.00 45.67 2.52
2525 3031 2.711009 TGTGGAACAGGTCTGAAGGAAT 59.289 45.455 4.84 0.00 45.67 3.01
2526 3032 2.123589 TGTGGAACAGGTCTGAAGGAA 58.876 47.619 4.84 0.00 45.67 3.36
2527 3033 1.801242 TGTGGAACAGGTCTGAAGGA 58.199 50.000 4.84 0.00 45.67 3.36
2545 3051 1.830279 AATGAGTGTGGGACAGCATG 58.170 50.000 0.00 0.00 41.80 4.06
2546 3052 2.592102 AAATGAGTGTGGGACAGCAT 57.408 45.000 0.00 0.00 41.80 3.79
2547 3053 2.552155 GGTAAATGAGTGTGGGACAGCA 60.552 50.000 0.00 0.00 41.80 4.41
2548 3054 2.084546 GGTAAATGAGTGTGGGACAGC 58.915 52.381 0.00 0.00 41.80 4.40
2549 3055 2.039746 TGGGTAAATGAGTGTGGGACAG 59.960 50.000 0.00 0.00 41.80 3.51
2550 3056 2.039746 CTGGGTAAATGAGTGTGGGACA 59.960 50.000 0.00 0.00 0.00 4.02
2551 3057 2.711542 CTGGGTAAATGAGTGTGGGAC 58.288 52.381 0.00 0.00 0.00 4.46
2552 3058 1.004277 GCTGGGTAAATGAGTGTGGGA 59.996 52.381 0.00 0.00 0.00 4.37
2553 3059 1.004745 AGCTGGGTAAATGAGTGTGGG 59.995 52.381 0.00 0.00 0.00 4.61
2554 3060 2.496899 AGCTGGGTAAATGAGTGTGG 57.503 50.000 0.00 0.00 0.00 4.17
2555 3061 4.207891 AGTAGCTGGGTAAATGAGTGTG 57.792 45.455 0.00 0.00 0.00 3.82
2556 3062 4.910458 AAGTAGCTGGGTAAATGAGTGT 57.090 40.909 0.00 0.00 0.00 3.55
2557 3063 5.978814 AGTAAGTAGCTGGGTAAATGAGTG 58.021 41.667 0.00 0.00 0.00 3.51
2558 3064 5.128991 GGAGTAAGTAGCTGGGTAAATGAGT 59.871 44.000 0.00 0.00 0.00 3.41
2559 3065 5.453480 GGGAGTAAGTAGCTGGGTAAATGAG 60.453 48.000 0.00 0.00 0.00 2.90
2560 3066 4.407945 GGGAGTAAGTAGCTGGGTAAATGA 59.592 45.833 0.00 0.00 0.00 2.57
2561 3067 4.444449 GGGGAGTAAGTAGCTGGGTAAATG 60.444 50.000 0.00 0.00 0.00 2.32
2562 3068 3.715315 GGGGAGTAAGTAGCTGGGTAAAT 59.285 47.826 0.00 0.00 0.00 1.40
2563 3069 3.109928 GGGGAGTAAGTAGCTGGGTAAA 58.890 50.000 0.00 0.00 0.00 2.01
2564 3070 2.044769 TGGGGAGTAAGTAGCTGGGTAA 59.955 50.000 0.00 0.00 0.00 2.85
2565 3071 1.647506 TGGGGAGTAAGTAGCTGGGTA 59.352 52.381 0.00 0.00 0.00 3.69
2566 3072 0.416231 TGGGGAGTAAGTAGCTGGGT 59.584 55.000 0.00 0.00 0.00 4.51
2567 3073 1.209747 GTTGGGGAGTAAGTAGCTGGG 59.790 57.143 0.00 0.00 0.00 4.45
2568 3074 2.093447 CAGTTGGGGAGTAAGTAGCTGG 60.093 54.545 0.00 0.00 0.00 4.85
2569 3075 2.567615 ACAGTTGGGGAGTAAGTAGCTG 59.432 50.000 0.00 0.00 0.00 4.24
2570 3076 2.832733 GACAGTTGGGGAGTAAGTAGCT 59.167 50.000 0.00 0.00 0.00 3.32
2571 3077 2.093606 GGACAGTTGGGGAGTAAGTAGC 60.094 54.545 0.00 0.00 0.00 3.58
2572 3078 2.500504 GGGACAGTTGGGGAGTAAGTAG 59.499 54.545 0.00 0.00 0.00 2.57
2573 3079 2.113052 AGGGACAGTTGGGGAGTAAGTA 59.887 50.000 0.00 0.00 0.00 2.24
2574 3080 1.132495 AGGGACAGTTGGGGAGTAAGT 60.132 52.381 0.00 0.00 0.00 2.24
2575 3081 1.279271 CAGGGACAGTTGGGGAGTAAG 59.721 57.143 0.00 0.00 0.00 2.34
2576 3082 1.132657 TCAGGGACAGTTGGGGAGTAA 60.133 52.381 0.00 0.00 0.00 2.24
2577 3083 0.490017 TCAGGGACAGTTGGGGAGTA 59.510 55.000 0.00 0.00 0.00 2.59
2578 3084 1.128188 GTCAGGGACAGTTGGGGAGT 61.128 60.000 0.00 0.00 32.09 3.85
2579 3085 1.679898 GTCAGGGACAGTTGGGGAG 59.320 63.158 0.00 0.00 32.09 4.30
2580 3086 2.214216 CGTCAGGGACAGTTGGGGA 61.214 63.158 0.00 0.00 32.09 4.81
2581 3087 2.052047 AACGTCAGGGACAGTTGGGG 62.052 60.000 0.00 0.00 31.97 4.96
2582 3088 0.602905 GAACGTCAGGGACAGTTGGG 60.603 60.000 9.90 0.00 32.77 4.12
2583 3089 0.105964 TGAACGTCAGGGACAGTTGG 59.894 55.000 9.90 0.00 32.77 3.77
2584 3090 2.069273 GATGAACGTCAGGGACAGTTG 58.931 52.381 9.90 0.00 32.77 3.16
2585 3091 1.336887 CGATGAACGTCAGGGACAGTT 60.337 52.381 0.00 6.39 34.25 3.16
2586 3092 0.243907 CGATGAACGTCAGGGACAGT 59.756 55.000 0.00 0.00 37.22 3.55
2587 3093 1.078759 GCGATGAACGTCAGGGACAG 61.079 60.000 0.00 0.00 44.60 3.51
2588 3094 1.080093 GCGATGAACGTCAGGGACA 60.080 57.895 0.00 0.00 44.60 4.02
2589 3095 1.078759 CTGCGATGAACGTCAGGGAC 61.079 60.000 0.00 0.00 44.60 4.46
2590 3096 1.215382 CTGCGATGAACGTCAGGGA 59.785 57.895 0.00 0.00 44.60 4.20
2591 3097 1.079819 ACTGCGATGAACGTCAGGG 60.080 57.895 10.09 0.00 44.11 4.45
2592 3098 1.959899 GCACTGCGATGAACGTCAGG 61.960 60.000 10.09 2.88 44.11 3.86
2593 3099 1.284297 TGCACTGCGATGAACGTCAG 61.284 55.000 0.00 0.00 44.75 3.51
2594 3100 0.878086 TTGCACTGCGATGAACGTCA 60.878 50.000 0.00 0.00 44.60 4.35
2595 3101 0.234625 TTTGCACTGCGATGAACGTC 59.765 50.000 0.00 0.00 44.60 4.34
2596 3102 0.235665 CTTTGCACTGCGATGAACGT 59.764 50.000 0.00 0.00 44.60 3.99
2597 3103 1.061799 GCTTTGCACTGCGATGAACG 61.062 55.000 8.10 0.00 45.66 3.95
2598 3104 2.716988 GCTTTGCACTGCGATGAAC 58.283 52.632 8.10 0.00 0.00 3.18
2605 3111 2.554365 CTAGACGCGCTTTGCACTGC 62.554 60.000 5.73 0.00 46.97 4.40
2606 3112 1.417592 CTAGACGCGCTTTGCACTG 59.582 57.895 5.73 0.00 46.97 3.66
2607 3113 2.383527 GCTAGACGCGCTTTGCACT 61.384 57.895 5.73 0.00 46.97 4.40
2608 3114 1.076533 TAGCTAGACGCGCTTTGCAC 61.077 55.000 5.73 0.00 46.97 4.57
2609 3115 1.076533 GTAGCTAGACGCGCTTTGCA 61.077 55.000 5.73 0.00 46.97 4.08
2610 3116 1.631595 GTAGCTAGACGCGCTTTGC 59.368 57.895 5.73 7.45 45.59 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.