Multiple sequence alignment - TraesCS4D01G268200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G268200 chr4D 100.000 3275 0 0 1 3275 439682680 439679406 0.000000e+00 6048.0
1 TraesCS4D01G268200 chr4D 90.698 258 18 3 2809 3063 333774124 333774378 4.050000e-89 339.0
2 TraesCS4D01G268200 chr4A 94.640 2388 74 25 728 3063 29014228 29011843 0.000000e+00 3651.0
3 TraesCS4D01G268200 chr4A 94.231 52 3 0 374 425 29014924 29014873 2.710000e-11 80.5
4 TraesCS4D01G268200 chr4B 95.074 1888 59 15 728 2583 544029741 544027856 0.000000e+00 2940.0
5 TraesCS4D01G268200 chr4B 87.569 724 75 11 19 736 544030558 544029844 0.000000e+00 824.0
6 TraesCS4D01G268200 chr4B 92.391 460 22 6 2578 3035 544022304 544021856 0.000000e+00 643.0
7 TraesCS4D01G268200 chr4B 96.226 212 8 0 3064 3275 642942907 642943118 6.730000e-92 348.0
8 TraesCS4D01G268200 chr4B 89.412 255 24 2 2809 3063 411718435 411718686 5.270000e-83 318.0
9 TraesCS4D01G268200 chr1B 97.183 213 6 0 3063 3275 457005692 457005904 8.640000e-96 361.0
10 TraesCS4D01G268200 chr1D 92.157 255 15 4 2810 3063 142333257 142333507 4.020000e-94 355.0
11 TraesCS4D01G268200 chr1A 91.373 255 18 4 2810 3063 147705944 147705693 2.420000e-91 346.0
12 TraesCS4D01G268200 chr7B 91.667 240 20 0 2824 3063 9631800 9631561 1.880000e-87 333.0
13 TraesCS4D01G268200 chr7B 91.342 231 20 0 2831 3061 608368457 608368227 1.900000e-82 316.0
14 TraesCS4D01G268200 chr5A 90.800 250 21 2 2814 3063 681408444 681408197 1.880000e-87 333.0
15 TraesCS4D01G268200 chr3D 90.000 250 23 2 2812 3061 553289019 553288772 4.080000e-84 322.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G268200 chr4D 439679406 439682680 3274 True 6048.00 6048 100.0000 1 3275 1 chr4D.!!$R1 3274
1 TraesCS4D01G268200 chr4A 29011843 29014924 3081 True 1865.75 3651 94.4355 374 3063 2 chr4A.!!$R1 2689
2 TraesCS4D01G268200 chr4B 544027856 544030558 2702 True 1882.00 2940 91.3215 19 2583 2 chr4B.!!$R2 2564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
233 234 0.101040 GCATGCAAATAAGGCAGCGA 59.899 50.000 14.21 0.00 45.68 4.93 F
237 238 1.133946 GCAAATAAGGCAGCGAACGC 61.134 55.000 11.31 11.31 42.33 4.84 F
936 1416 3.538832 TATTAAGCGCGGGCCGGA 61.539 61.111 29.48 7.29 41.24 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1957 2481 2.114670 CCTTGCCGAATGCCGACAT 61.115 57.895 0.0 0.0 41.76 3.06 R
1958 2482 2.745884 CCTTGCCGAATGCCGACA 60.746 61.111 0.0 0.0 41.76 4.35 R
2676 3202 2.497107 ACAAGAACACTGCACAATGC 57.503 45.000 0.0 0.0 45.29 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.266964 GGCAATCGAAGCAGTGCA 58.733 55.556 19.20 0.00 38.78 4.57
23 24 2.249413 ATCGAAGCAGTGCAGGGAGG 62.249 60.000 19.20 0.06 0.00 4.30
47 48 4.116328 CTCGACGGGAGCTCGCAA 62.116 66.667 27.95 10.92 35.63 4.85
57 58 0.247458 GAGCTCGCAATCGAAACAGC 60.247 55.000 0.00 0.00 44.98 4.40
65 66 2.869503 AATCGAAACAGCGCGGGGAT 62.870 55.000 13.26 6.20 0.00 3.85
78 79 2.027751 GGGATGCGGCTACTCGAC 59.972 66.667 0.00 0.00 0.00 4.20
85 86 2.882876 GGCTACTCGACGGAAGCA 59.117 61.111 15.45 0.00 36.68 3.91
88 89 1.071567 GCTACTCGACGGAAGCACAC 61.072 60.000 10.71 0.00 35.05 3.82
94 95 1.337817 CGACGGAAGCACACGAAGAG 61.338 60.000 0.00 0.00 0.00 2.85
115 116 1.730772 CGTGAGAGGCGACTTCTCTTG 60.731 57.143 15.73 7.12 44.43 3.02
123 124 1.535015 GCGACTTCTCTTGAGGATCCG 60.535 57.143 5.98 0.00 0.00 4.18
142 143 2.491086 CCGGATCCTACACTAGACCCAT 60.491 54.545 10.75 0.00 0.00 4.00
150 151 3.222173 ACACTAGACCCATTTGTTGCA 57.778 42.857 0.00 0.00 0.00 4.08
155 156 4.832266 ACTAGACCCATTTGTTGCAATGAA 59.168 37.500 0.59 0.68 0.00 2.57
178 179 1.537202 AGATTGCAAGAACGAGCCAAC 59.463 47.619 4.94 0.00 0.00 3.77
179 180 1.537202 GATTGCAAGAACGAGCCAACT 59.463 47.619 4.94 0.00 0.00 3.16
194 195 2.100749 GCCAACTGCAAAAACTAGTGGT 59.899 45.455 0.00 0.00 40.77 4.16
207 208 1.204786 TAGTGGTGGTGGACATGGGG 61.205 60.000 0.00 0.00 0.00 4.96
229 230 0.173029 CGTGGCATGCAAATAAGGCA 59.827 50.000 21.36 2.10 46.66 4.75
230 231 1.799917 CGTGGCATGCAAATAAGGCAG 60.800 52.381 21.36 0.00 45.68 4.85
233 234 0.101040 GCATGCAAATAAGGCAGCGA 59.899 50.000 14.21 0.00 45.68 4.93
235 236 2.187707 CATGCAAATAAGGCAGCGAAC 58.812 47.619 0.00 0.00 45.68 3.95
237 238 1.133946 GCAAATAAGGCAGCGAACGC 61.134 55.000 11.31 11.31 42.33 4.84
253 254 4.688966 GCGGATCTGCGATCCCCC 62.689 72.222 23.18 14.87 34.76 5.40
273 274 6.051074 CCCCCTGATGATTTAAAGCATTTTC 58.949 40.000 19.23 9.16 40.09 2.29
274 275 6.126968 CCCCCTGATGATTTAAAGCATTTTCT 60.127 38.462 19.23 0.00 40.09 2.52
630 893 5.847111 AAAAAGGTCCCGCTATAAAATCC 57.153 39.130 0.00 0.00 0.00 3.01
638 952 5.697178 GTCCCGCTATAAAATCCTTTCTCTC 59.303 44.000 0.00 0.00 0.00 3.20
675 989 7.599630 TGCTTCATTTTGAGCCAATAAAATC 57.400 32.000 0.00 0.00 35.07 2.17
677 991 6.237915 GCTTCATTTTGAGCCAATAAAATCCG 60.238 38.462 0.00 0.00 35.07 4.18
688 1002 5.355910 GCCAATAAAATCCGTCCTTTGTCTA 59.644 40.000 0.00 0.00 0.00 2.59
702 1016 8.237267 CGTCCTTTGTCTAGAAAAATAATTGCT 58.763 33.333 8.56 0.00 0.00 3.91
855 1328 4.991687 AGACAAGGAAGTCGAAAGTGATTC 59.008 41.667 0.00 0.00 43.24 2.52
915 1395 4.011517 TTCCTCCGTTGACCGCCC 62.012 66.667 0.00 0.00 34.38 6.13
936 1416 3.538832 TATTAAGCGCGGGCCGGA 61.539 61.111 29.48 7.29 41.24 5.14
1957 2481 1.494721 ACAAGCCCAAAGAGGACTTCA 59.505 47.619 0.00 0.00 41.22 3.02
1958 2482 2.108952 ACAAGCCCAAAGAGGACTTCAT 59.891 45.455 0.00 0.00 41.22 2.57
2510 3034 6.150474 GGCTAGTTACTTAATGCTTGGTTGAA 59.850 38.462 0.00 0.00 0.00 2.69
2576 3101 2.731976 CGTAGCACTCCAGTTTGTCTTC 59.268 50.000 0.00 0.00 0.00 2.87
2606 3132 6.707440 TGTTGTATTGTTCTTGTGACCAAT 57.293 33.333 0.00 0.00 38.55 3.16
2607 3133 7.106439 TGTTGTATTGTTCTTGTGACCAATT 57.894 32.000 0.00 0.00 36.79 2.32
2666 3192 9.103861 CAGTTTTGTTTTTGGCTTCCTTTTATA 57.896 29.630 0.00 0.00 0.00 0.98
2676 3202 8.450578 TTGGCTTCCTTTTATACATAGTCATG 57.549 34.615 0.00 0.00 38.21 3.07
2879 3410 8.771920 ACAATTACATCGTTTATGAAGAGTGA 57.228 30.769 0.00 0.00 39.07 3.41
2921 3452 4.594970 TCCTCAAACCAGTCAAAAGTTGA 58.405 39.130 0.00 0.00 37.33 3.18
2998 3531 4.938080 ACAGTGCTCGAATCTAGTAATGG 58.062 43.478 5.49 0.00 30.38 3.16
3063 3596 4.527157 GTACTCGCCGTCCGTCCG 62.527 72.222 0.00 0.00 38.35 4.79
3073 3606 2.522436 TCCGTCCGGAAGTGGTGT 60.522 61.111 16.46 0.00 42.05 4.16
3074 3607 2.135581 TCCGTCCGGAAGTGGTGTT 61.136 57.895 16.46 0.00 42.05 3.32
3075 3608 1.227734 CCGTCCGGAAGTGGTGTTT 60.228 57.895 16.46 0.00 37.50 2.83
3076 3609 1.226030 CCGTCCGGAAGTGGTGTTTC 61.226 60.000 16.46 0.00 37.50 2.78
3077 3610 0.249741 CGTCCGGAAGTGGTGTTTCT 60.250 55.000 5.23 0.00 0.00 2.52
3078 3611 1.226746 GTCCGGAAGTGGTGTTTCTG 58.773 55.000 5.23 0.00 0.00 3.02
3079 3612 1.124780 TCCGGAAGTGGTGTTTCTGA 58.875 50.000 0.00 0.00 33.67 3.27
3080 3613 1.487142 TCCGGAAGTGGTGTTTCTGAA 59.513 47.619 0.00 0.00 33.67 3.02
3081 3614 1.602377 CCGGAAGTGGTGTTTCTGAAC 59.398 52.381 0.00 0.00 33.67 3.18
3082 3615 2.285083 CGGAAGTGGTGTTTCTGAACA 58.715 47.619 0.00 0.00 43.23 3.18
3083 3616 2.878406 CGGAAGTGGTGTTTCTGAACAT 59.122 45.455 0.00 0.00 46.63 2.71
3084 3617 3.303990 CGGAAGTGGTGTTTCTGAACATG 60.304 47.826 0.00 0.00 46.63 3.21
3085 3618 3.882888 GGAAGTGGTGTTTCTGAACATGA 59.117 43.478 0.00 0.00 46.63 3.07
3086 3619 4.023707 GGAAGTGGTGTTTCTGAACATGAG 60.024 45.833 0.00 0.00 46.63 2.90
3087 3620 2.880890 AGTGGTGTTTCTGAACATGAGC 59.119 45.455 0.00 0.00 46.63 4.26
3088 3621 2.618241 GTGGTGTTTCTGAACATGAGCA 59.382 45.455 0.00 0.00 46.63 4.26
3089 3622 2.618241 TGGTGTTTCTGAACATGAGCAC 59.382 45.455 0.00 0.00 46.63 4.40
3090 3623 2.618241 GGTGTTTCTGAACATGAGCACA 59.382 45.455 0.00 0.00 46.63 4.57
3091 3624 3.548818 GGTGTTTCTGAACATGAGCACAC 60.549 47.826 0.00 9.60 46.63 3.82
3092 3625 2.618241 TGTTTCTGAACATGAGCACACC 59.382 45.455 0.00 0.00 40.71 4.16
3093 3626 2.880890 GTTTCTGAACATGAGCACACCT 59.119 45.455 0.00 0.00 35.79 4.00
3094 3627 2.174363 TCTGAACATGAGCACACCTG 57.826 50.000 0.00 0.00 0.00 4.00
3095 3628 0.520404 CTGAACATGAGCACACCTGC 59.480 55.000 0.00 0.00 44.63 4.85
3104 3637 3.595691 GCACACCTGCGCTCTATAT 57.404 52.632 9.73 0.00 32.44 0.86
3105 3638 1.423395 GCACACCTGCGCTCTATATC 58.577 55.000 9.73 0.00 32.44 1.63
3106 3639 1.000283 GCACACCTGCGCTCTATATCT 60.000 52.381 9.73 0.00 32.44 1.98
3107 3640 2.670479 CACACCTGCGCTCTATATCTG 58.330 52.381 9.73 0.00 0.00 2.90
3108 3641 1.615883 ACACCTGCGCTCTATATCTGG 59.384 52.381 9.73 0.00 0.00 3.86
3109 3642 1.067283 CACCTGCGCTCTATATCTGGG 60.067 57.143 9.73 0.00 0.00 4.45
3110 3643 0.108424 CCTGCGCTCTATATCTGGGC 60.108 60.000 9.73 0.00 39.58 5.36
3112 3645 1.153745 GCGCTCTATATCTGGGCGG 60.154 63.158 19.82 6.54 44.92 6.13
3113 3646 1.878656 GCGCTCTATATCTGGGCGGT 61.879 60.000 19.82 0.00 44.92 5.68
3114 3647 0.603569 CGCTCTATATCTGGGCGGTT 59.396 55.000 13.19 0.00 41.77 4.44
3115 3648 1.670087 CGCTCTATATCTGGGCGGTTG 60.670 57.143 13.19 0.00 41.77 3.77
3116 3649 1.618837 GCTCTATATCTGGGCGGTTGA 59.381 52.381 0.00 0.00 0.00 3.18
3117 3650 2.353208 GCTCTATATCTGGGCGGTTGAG 60.353 54.545 0.00 0.00 0.00 3.02
3118 3651 1.618837 TCTATATCTGGGCGGTTGAGC 59.381 52.381 0.00 0.00 0.00 4.26
3119 3652 0.317160 TATATCTGGGCGGTTGAGCG 59.683 55.000 0.00 0.00 38.18 5.03
3120 3653 2.383245 ATATCTGGGCGGTTGAGCGG 62.383 60.000 4.69 0.00 38.18 5.52
3125 3658 4.681978 GGCGGTTGAGCGGTGTCT 62.682 66.667 4.69 0.00 38.18 3.41
3126 3659 3.112709 GCGGTTGAGCGGTGTCTC 61.113 66.667 4.69 0.00 0.00 3.36
3127 3660 2.805353 CGGTTGAGCGGTGTCTCG 60.805 66.667 0.00 0.00 35.90 4.04
3128 3661 2.432628 GGTTGAGCGGTGTCTCGG 60.433 66.667 0.00 0.00 35.90 4.63
3129 3662 2.432628 GTTGAGCGGTGTCTCGGG 60.433 66.667 0.00 0.00 35.90 5.14
3130 3663 2.599281 TTGAGCGGTGTCTCGGGA 60.599 61.111 0.00 0.00 35.90 5.14
3131 3664 1.982395 TTGAGCGGTGTCTCGGGAT 60.982 57.895 0.00 0.00 35.90 3.85
3132 3665 2.105128 GAGCGGTGTCTCGGGATG 59.895 66.667 0.00 0.00 0.00 3.51
3133 3666 4.148825 AGCGGTGTCTCGGGATGC 62.149 66.667 0.00 0.00 0.00 3.91
3135 3668 3.822192 CGGTGTCTCGGGATGCGA 61.822 66.667 0.00 0.00 0.00 5.10
3136 3669 2.815308 GGTGTCTCGGGATGCGAT 59.185 61.111 0.00 0.00 0.00 4.58
3137 3670 1.592669 GGTGTCTCGGGATGCGATG 60.593 63.158 0.00 0.00 0.00 3.84
3138 3671 2.106938 TGTCTCGGGATGCGATGC 59.893 61.111 0.00 0.00 0.00 3.91
3139 3672 2.106938 GTCTCGGGATGCGATGCA 59.893 61.111 0.00 0.00 44.86 3.96
3151 3684 2.016318 TGCGATGCATTAAAGAGGTGG 58.984 47.619 0.00 0.00 31.71 4.61
3152 3685 1.334869 GCGATGCATTAAAGAGGTGGG 59.665 52.381 0.00 0.00 0.00 4.61
3153 3686 2.643551 CGATGCATTAAAGAGGTGGGT 58.356 47.619 0.00 0.00 0.00 4.51
3154 3687 2.355756 CGATGCATTAAAGAGGTGGGTG 59.644 50.000 0.00 0.00 0.00 4.61
3155 3688 3.620488 GATGCATTAAAGAGGTGGGTGA 58.380 45.455 0.00 0.00 0.00 4.02
3156 3689 3.071874 TGCATTAAAGAGGTGGGTGAG 57.928 47.619 0.00 0.00 0.00 3.51
3157 3690 2.642311 TGCATTAAAGAGGTGGGTGAGA 59.358 45.455 0.00 0.00 0.00 3.27
3158 3691 3.266772 TGCATTAAAGAGGTGGGTGAGAT 59.733 43.478 0.00 0.00 0.00 2.75
3159 3692 4.473196 TGCATTAAAGAGGTGGGTGAGATA 59.527 41.667 0.00 0.00 0.00 1.98
3160 3693 4.816925 GCATTAAAGAGGTGGGTGAGATAC 59.183 45.833 0.00 0.00 0.00 2.24
3161 3694 4.730949 TTAAAGAGGTGGGTGAGATACG 57.269 45.455 0.00 0.00 0.00 3.06
3162 3695 0.824759 AAGAGGTGGGTGAGATACGC 59.175 55.000 0.00 0.00 42.21 4.42
3163 3696 1.065928 GAGGTGGGTGAGATACGCG 59.934 63.158 3.53 3.53 44.60 6.01
3164 3697 1.379443 AGGTGGGTGAGATACGCGA 60.379 57.895 15.93 0.00 44.60 5.87
3165 3698 1.065928 GGTGGGTGAGATACGCGAG 59.934 63.158 15.93 0.00 44.60 5.03
3166 3699 1.589196 GTGGGTGAGATACGCGAGC 60.589 63.158 15.93 0.00 44.60 5.03
3167 3700 2.353607 GGGTGAGATACGCGAGCG 60.354 66.667 15.93 16.38 46.03 5.03
3178 3711 3.528594 CGCGAGCGTCTGTAAGTAT 57.471 52.632 0.00 0.00 33.76 2.12
3179 3712 1.386961 CGCGAGCGTCTGTAAGTATC 58.613 55.000 0.00 0.00 33.76 2.24
3180 3713 1.386961 GCGAGCGTCTGTAAGTATCG 58.613 55.000 0.00 0.00 33.76 2.92
3181 3714 1.004185 GCGAGCGTCTGTAAGTATCGA 60.004 52.381 0.00 0.00 33.76 3.59
3182 3715 2.538333 GCGAGCGTCTGTAAGTATCGAA 60.538 50.000 0.00 0.00 33.76 3.71
3183 3716 3.677601 CGAGCGTCTGTAAGTATCGAAA 58.322 45.455 0.00 0.00 33.76 3.46
3184 3717 4.093514 CGAGCGTCTGTAAGTATCGAAAA 58.906 43.478 0.00 0.00 33.76 2.29
3185 3718 4.556135 CGAGCGTCTGTAAGTATCGAAAAA 59.444 41.667 0.00 0.00 33.76 1.94
3186 3719 5.275326 CGAGCGTCTGTAAGTATCGAAAAAG 60.275 44.000 0.00 0.00 33.76 2.27
3187 3720 5.706916 AGCGTCTGTAAGTATCGAAAAAGA 58.293 37.500 0.00 0.00 33.76 2.52
3188 3721 6.154445 AGCGTCTGTAAGTATCGAAAAAGAA 58.846 36.000 0.00 0.00 33.76 2.52
3189 3722 6.308282 AGCGTCTGTAAGTATCGAAAAAGAAG 59.692 38.462 0.00 0.00 33.76 2.85
3190 3723 6.307318 GCGTCTGTAAGTATCGAAAAAGAAGA 59.693 38.462 0.00 0.00 33.76 2.87
3191 3724 7.148853 GCGTCTGTAAGTATCGAAAAAGAAGAA 60.149 37.037 0.00 0.00 33.76 2.52
3192 3725 8.697067 CGTCTGTAAGTATCGAAAAAGAAGAAA 58.303 33.333 0.00 0.00 33.76 2.52
3199 3732 9.503399 AAGTATCGAAAAAGAAGAAATACACCT 57.497 29.630 0.00 0.00 0.00 4.00
3200 3733 8.936864 AGTATCGAAAAAGAAGAAATACACCTG 58.063 33.333 0.00 0.00 0.00 4.00
3201 3734 7.979444 ATCGAAAAAGAAGAAATACACCTGA 57.021 32.000 0.00 0.00 0.00 3.86
3202 3735 7.421530 TCGAAAAAGAAGAAATACACCTGAG 57.578 36.000 0.00 0.00 0.00 3.35
3203 3736 6.073222 TCGAAAAAGAAGAAATACACCTGAGC 60.073 38.462 0.00 0.00 0.00 4.26
3204 3737 6.073003 CGAAAAAGAAGAAATACACCTGAGCT 60.073 38.462 0.00 0.00 0.00 4.09
3205 3738 7.117812 CGAAAAAGAAGAAATACACCTGAGCTA 59.882 37.037 0.00 0.00 0.00 3.32
3206 3739 8.870075 AAAAAGAAGAAATACACCTGAGCTAT 57.130 30.769 0.00 0.00 0.00 2.97
3207 3740 8.499403 AAAAGAAGAAATACACCTGAGCTATC 57.501 34.615 0.00 0.00 0.00 2.08
3208 3741 5.837437 AGAAGAAATACACCTGAGCTATCG 58.163 41.667 0.00 0.00 0.00 2.92
3209 3742 3.983741 AGAAATACACCTGAGCTATCGC 58.016 45.455 0.00 0.00 0.00 4.58
3219 3752 2.935505 AGCTATCGCTAGGACGGAG 58.064 57.895 0.00 0.00 46.79 4.63
3220 3753 0.397187 AGCTATCGCTAGGACGGAGA 59.603 55.000 0.00 0.00 46.79 3.71
3221 3754 0.518195 GCTATCGCTAGGACGGAGAC 59.482 60.000 0.00 0.00 0.00 3.36
3222 3755 1.880271 CTATCGCTAGGACGGAGACA 58.120 55.000 0.00 0.00 0.00 3.41
3223 3756 2.219458 CTATCGCTAGGACGGAGACAA 58.781 52.381 0.00 0.00 0.00 3.18
3224 3757 1.471119 ATCGCTAGGACGGAGACAAA 58.529 50.000 0.00 0.00 0.00 2.83
3225 3758 0.809385 TCGCTAGGACGGAGACAAAG 59.191 55.000 0.00 0.00 0.00 2.77
3226 3759 0.179134 CGCTAGGACGGAGACAAAGG 60.179 60.000 0.00 0.00 0.00 3.11
3227 3760 1.183549 GCTAGGACGGAGACAAAGGA 58.816 55.000 0.00 0.00 0.00 3.36
3228 3761 1.549170 GCTAGGACGGAGACAAAGGAA 59.451 52.381 0.00 0.00 0.00 3.36
3229 3762 2.674462 GCTAGGACGGAGACAAAGGAAC 60.674 54.545 0.00 0.00 0.00 3.62
3230 3763 0.317479 AGGACGGAGACAAAGGAACG 59.683 55.000 0.00 0.00 0.00 3.95
3231 3764 0.669625 GGACGGAGACAAAGGAACGG 60.670 60.000 0.00 0.00 0.00 4.44
3232 3765 1.289800 GACGGAGACAAAGGAACGGC 61.290 60.000 0.00 0.00 0.00 5.68
3233 3766 2.380410 CGGAGACAAAGGAACGGCG 61.380 63.158 4.80 4.80 0.00 6.46
3234 3767 2.033194 GGAGACAAAGGAACGGCGG 61.033 63.158 13.24 0.00 0.00 6.13
3235 3768 1.301479 GAGACAAAGGAACGGCGGT 60.301 57.895 13.24 3.35 0.00 5.68
3236 3769 1.289800 GAGACAAAGGAACGGCGGTC 61.290 60.000 18.34 18.34 0.00 4.79
3237 3770 2.663852 ACAAAGGAACGGCGGTCG 60.664 61.111 19.88 7.48 45.88 4.79
3260 3793 2.665185 GGCACGAAGTTGAGCCGT 60.665 61.111 0.00 0.00 41.61 5.68
3262 3795 3.244105 CACGAAGTTGAGCCGTGG 58.756 61.111 0.00 0.00 46.72 4.94
3263 3796 2.665185 ACGAAGTTGAGCCGTGGC 60.665 61.111 1.67 1.67 37.78 5.01
3273 3806 3.414700 GCCGTGGCTCAACTCGTG 61.415 66.667 2.98 0.00 38.26 4.35
3274 3807 2.738521 CCGTGGCTCAACTCGTGG 60.739 66.667 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.136147 CTGCACTGCTTCGATTGCC 59.864 57.895 1.98 0.00 33.86 4.52
1 2 1.136147 CCTGCACTGCTTCGATTGC 59.864 57.895 1.98 4.25 35.45 3.56
2 3 0.674581 TCCCTGCACTGCTTCGATTG 60.675 55.000 1.98 0.00 0.00 2.67
3 4 0.392193 CTCCCTGCACTGCTTCGATT 60.392 55.000 1.98 0.00 0.00 3.34
4 5 1.220206 CTCCCTGCACTGCTTCGAT 59.780 57.895 1.98 0.00 0.00 3.59
5 6 2.659016 CTCCCTGCACTGCTTCGA 59.341 61.111 1.98 0.00 0.00 3.71
6 7 2.435586 CCTCCCTGCACTGCTTCG 60.436 66.667 1.98 0.00 0.00 3.79
7 8 2.749441 GCCTCCCTGCACTGCTTC 60.749 66.667 1.98 0.00 0.00 3.86
8 9 4.711949 CGCCTCCCTGCACTGCTT 62.712 66.667 1.98 0.00 0.00 3.91
27 28 2.202492 CGAGCTCCCGTCGAGTTG 60.202 66.667 8.47 0.00 41.10 3.16
47 48 3.385749 ATCCCCGCGCTGTTTCGAT 62.386 57.895 5.56 0.00 0.00 3.59
65 66 3.047718 CTTCCGTCGAGTAGCCGCA 62.048 63.158 0.00 0.00 0.00 5.69
78 79 2.720758 CGCTCTTCGTGTGCTTCCG 61.721 63.158 0.00 0.00 33.42 4.30
88 89 2.578178 CGCCTCTCACGCTCTTCG 60.578 66.667 0.00 0.00 45.38 3.79
94 95 1.515304 GAGAAGTCGCCTCTCACGC 60.515 63.158 4.07 0.00 0.00 5.34
96 97 1.542030 TCAAGAGAAGTCGCCTCTCAC 59.458 52.381 9.84 0.00 39.88 3.51
97 98 1.815613 CTCAAGAGAAGTCGCCTCTCA 59.184 52.381 9.84 0.00 39.88 3.27
98 99 1.134175 CCTCAAGAGAAGTCGCCTCTC 59.866 57.143 0.00 1.31 39.88 3.20
100 101 1.178276 TCCTCAAGAGAAGTCGCCTC 58.822 55.000 0.00 0.00 0.00 4.70
123 124 4.409247 ACAAATGGGTCTAGTGTAGGATCC 59.591 45.833 2.48 2.48 33.61 3.36
130 131 3.222173 TGCAACAAATGGGTCTAGTGT 57.778 42.857 0.00 0.00 0.00 3.55
133 134 5.389859 TTCATTGCAACAAATGGGTCTAG 57.610 39.130 0.00 0.00 37.98 2.43
134 135 5.538053 TCTTTCATTGCAACAAATGGGTCTA 59.462 36.000 0.00 0.00 37.98 2.59
150 151 5.618640 GCTCGTTCTTGCAATCTCTTTCATT 60.619 40.000 0.00 0.00 0.00 2.57
155 156 2.079925 GGCTCGTTCTTGCAATCTCTT 58.920 47.619 0.00 0.00 0.00 2.85
178 179 2.034558 CCACCACCACTAGTTTTTGCAG 59.965 50.000 0.00 0.00 0.00 4.41
179 180 2.028130 CCACCACCACTAGTTTTTGCA 58.972 47.619 0.00 0.00 0.00 4.08
194 195 4.343323 CGTGCCCCATGTCCACCA 62.343 66.667 0.00 0.00 0.00 4.17
207 208 1.270971 CTTATTTGCATGCCACGTGC 58.729 50.000 16.68 6.53 42.81 5.34
221 222 2.461110 CCGCGTTCGCTGCCTTATT 61.461 57.895 14.92 0.00 0.00 1.40
223 224 3.365291 ATCCGCGTTCGCTGCCTTA 62.365 57.895 14.92 0.00 0.00 2.69
237 238 2.919856 AGGGGGATCGCAGATCCG 60.920 66.667 22.67 0.00 45.12 4.18
247 248 4.541250 TGCTTTAAATCATCAGGGGGAT 57.459 40.909 0.00 0.00 36.39 3.85
608 871 5.516044 AGGATTTTATAGCGGGACCTTTTT 58.484 37.500 0.00 0.00 0.00 1.94
609 872 5.125367 AGGATTTTATAGCGGGACCTTTT 57.875 39.130 0.00 0.00 0.00 2.27
610 873 4.790718 AGGATTTTATAGCGGGACCTTT 57.209 40.909 0.00 0.00 0.00 3.11
611 874 4.790718 AAGGATTTTATAGCGGGACCTT 57.209 40.909 0.00 0.00 0.00 3.50
612 875 4.412528 AGAAAGGATTTTATAGCGGGACCT 59.587 41.667 0.00 0.00 39.27 3.85
613 876 4.715713 AGAAAGGATTTTATAGCGGGACC 58.284 43.478 0.00 0.00 39.27 4.46
614 877 5.612351 AGAGAAAGGATTTTATAGCGGGAC 58.388 41.667 0.00 0.00 39.27 4.46
615 878 5.509163 CGAGAGAAAGGATTTTATAGCGGGA 60.509 44.000 0.00 0.00 39.27 5.14
616 879 4.686554 CGAGAGAAAGGATTTTATAGCGGG 59.313 45.833 0.00 0.00 39.27 6.13
617 880 5.290386 ACGAGAGAAAGGATTTTATAGCGG 58.710 41.667 0.00 0.00 39.27 5.52
618 881 8.522178 AATACGAGAGAAAGGATTTTATAGCG 57.478 34.615 0.00 0.00 39.27 4.26
619 882 8.927721 GGAATACGAGAGAAAGGATTTTATAGC 58.072 37.037 0.00 0.00 39.27 2.97
620 883 9.425577 GGGAATACGAGAGAAAGGATTTTATAG 57.574 37.037 0.00 0.00 39.27 1.31
621 884 9.155785 AGGGAATACGAGAGAAAGGATTTTATA 57.844 33.333 0.00 0.00 39.27 0.98
622 885 8.035448 AGGGAATACGAGAGAAAGGATTTTAT 57.965 34.615 0.00 0.00 39.27 1.40
630 893 3.868077 CAGCAAGGGAATACGAGAGAAAG 59.132 47.826 0.00 0.00 0.00 2.62
638 952 1.737838 TGAAGCAGCAAGGGAATACG 58.262 50.000 0.00 0.00 0.00 3.06
675 989 7.484959 GCAATTATTTTTCTAGACAAAGGACGG 59.515 37.037 9.74 1.85 0.00 4.79
677 991 9.914131 AAGCAATTATTTTTCTAGACAAAGGAC 57.086 29.630 9.74 0.00 0.00 3.85
688 1002 8.293699 AGTAATCCGGAAGCAATTATTTTTCT 57.706 30.769 9.01 0.00 0.00 2.52
702 1016 8.857694 AATCTTGAAAAAGTAGTAATCCGGAA 57.142 30.769 9.01 0.00 0.00 4.30
855 1328 2.338015 GCATCAGTGGGTGGCTGTG 61.338 63.158 0.00 0.00 35.60 3.66
898 1378 4.011517 GGGCGGTCAACGGAGGAA 62.012 66.667 0.00 0.00 44.51 3.36
915 1395 3.343421 GCCCGCGCTTAATACCGG 61.343 66.667 5.56 0.00 40.39 5.28
916 1396 3.343421 GGCCCGCGCTTAATACCG 61.343 66.667 5.56 0.00 34.44 4.02
1062 1555 3.145551 TAGAAGTCGGGGGCGAGC 61.146 66.667 0.00 0.00 0.00 5.03
1957 2481 2.114670 CCTTGCCGAATGCCGACAT 61.115 57.895 0.00 0.00 41.76 3.06
1958 2482 2.745884 CCTTGCCGAATGCCGACA 60.746 61.111 0.00 0.00 41.76 4.35
2111 2635 4.113815 CCGCCAAGCCATCCAGGA 62.114 66.667 0.00 0.00 41.22 3.86
2363 2887 4.891037 GCTGCTGGATGGAGGCCC 62.891 72.222 0.00 0.00 34.46 5.80
2630 3156 7.990314 AGCCAAAAACAAAACTGGTACAATATT 59.010 29.630 0.00 0.00 38.70 1.28
2676 3202 2.497107 ACAAGAACACTGCACAATGC 57.503 45.000 0.00 0.00 45.29 3.56
2733 3264 5.391312 GCCAAAGCTGGATCTTTAAAGAA 57.609 39.130 21.26 5.04 46.92 2.52
2759 3290 4.081142 TCCTCCTGCTTATCGTCAATGAAA 60.081 41.667 0.00 0.00 0.00 2.69
2879 3410 7.453393 TGAGGAGTCTTTGAGTGAAATTGTAT 58.547 34.615 0.00 0.00 0.00 2.29
2954 3485 7.339466 ACTGTAATAGGGAAGCAAATAAGGTTG 59.661 37.037 0.00 0.00 0.00 3.77
2971 3502 9.335891 CATTACTAGATTCGAGCACTGTAATAG 57.664 37.037 0.00 6.44 31.05 1.73
2998 3531 3.453424 ACGTTTTGGCTTGTGAATTTCC 58.547 40.909 0.00 0.00 0.00 3.13
3072 3605 2.880890 AGGTGTGCTCATGTTCAGAAAC 59.119 45.455 0.00 0.00 35.85 2.78
3073 3606 2.880268 CAGGTGTGCTCATGTTCAGAAA 59.120 45.455 0.00 0.00 0.00 2.52
3074 3607 2.497138 CAGGTGTGCTCATGTTCAGAA 58.503 47.619 0.00 0.00 0.00 3.02
3075 3608 2.174363 CAGGTGTGCTCATGTTCAGA 57.826 50.000 0.00 0.00 0.00 3.27
3087 3620 2.608998 CCAGATATAGAGCGCAGGTGTG 60.609 54.545 11.47 0.00 39.88 3.82
3088 3621 1.615883 CCAGATATAGAGCGCAGGTGT 59.384 52.381 11.47 0.00 39.88 4.16
3089 3622 1.067283 CCCAGATATAGAGCGCAGGTG 60.067 57.143 11.47 0.00 39.88 4.00
3090 3623 1.261480 CCCAGATATAGAGCGCAGGT 58.739 55.000 11.47 0.00 46.54 4.00
3091 3624 0.108424 GCCCAGATATAGAGCGCAGG 60.108 60.000 11.47 0.00 0.00 4.85
3092 3625 0.457509 CGCCCAGATATAGAGCGCAG 60.458 60.000 11.47 0.00 40.35 5.18
3093 3626 1.586541 CGCCCAGATATAGAGCGCA 59.413 57.895 11.47 0.00 40.35 6.09
3094 3627 1.153745 CCGCCCAGATATAGAGCGC 60.154 63.158 0.00 0.00 45.17 5.92
3095 3628 0.603569 AACCGCCCAGATATAGAGCG 59.396 55.000 0.00 0.00 46.04 5.03
3096 3629 1.618837 TCAACCGCCCAGATATAGAGC 59.381 52.381 0.00 0.00 0.00 4.09
3097 3630 2.353208 GCTCAACCGCCCAGATATAGAG 60.353 54.545 0.00 0.00 0.00 2.43
3098 3631 1.618837 GCTCAACCGCCCAGATATAGA 59.381 52.381 0.00 0.00 0.00 1.98
3099 3632 1.670087 CGCTCAACCGCCCAGATATAG 60.670 57.143 0.00 0.00 0.00 1.31
3100 3633 0.317160 CGCTCAACCGCCCAGATATA 59.683 55.000 0.00 0.00 0.00 0.86
3101 3634 1.069765 CGCTCAACCGCCCAGATAT 59.930 57.895 0.00 0.00 0.00 1.63
3102 3635 2.499205 CGCTCAACCGCCCAGATA 59.501 61.111 0.00 0.00 0.00 1.98
3103 3636 4.473520 CCGCTCAACCGCCCAGAT 62.474 66.667 0.00 0.00 0.00 2.90
3108 3641 4.681978 AGACACCGCTCAACCGCC 62.682 66.667 0.00 0.00 0.00 6.13
3109 3642 3.112709 GAGACACCGCTCAACCGC 61.113 66.667 0.00 0.00 35.01 5.68
3110 3643 2.805353 CGAGACACCGCTCAACCG 60.805 66.667 0.00 0.00 34.56 4.44
3111 3644 2.432628 CCGAGACACCGCTCAACC 60.433 66.667 0.00 0.00 34.56 3.77
3112 3645 2.227089 ATCCCGAGACACCGCTCAAC 62.227 60.000 0.00 0.00 34.56 3.18
3113 3646 1.982395 ATCCCGAGACACCGCTCAA 60.982 57.895 0.00 0.00 34.56 3.02
3114 3647 2.362503 ATCCCGAGACACCGCTCA 60.363 61.111 0.00 0.00 34.56 4.26
3115 3648 2.105128 CATCCCGAGACACCGCTC 59.895 66.667 0.00 0.00 0.00 5.03
3116 3649 4.148825 GCATCCCGAGACACCGCT 62.149 66.667 0.00 0.00 0.00 5.52
3118 3651 3.822192 TCGCATCCCGAGACACCG 61.822 66.667 0.00 0.00 41.89 4.94
3131 3664 2.016318 CCACCTCTTTAATGCATCGCA 58.984 47.619 0.00 0.00 44.86 5.10
3132 3665 1.334869 CCCACCTCTTTAATGCATCGC 59.665 52.381 0.00 0.00 0.00 4.58
3133 3666 2.355756 CACCCACCTCTTTAATGCATCG 59.644 50.000 0.00 0.00 0.00 3.84
3134 3667 3.620488 TCACCCACCTCTTTAATGCATC 58.380 45.455 0.00 0.00 0.00 3.91
3135 3668 3.266772 TCTCACCCACCTCTTTAATGCAT 59.733 43.478 0.00 0.00 0.00 3.96
3136 3669 2.642311 TCTCACCCACCTCTTTAATGCA 59.358 45.455 0.00 0.00 0.00 3.96
3137 3670 3.350219 TCTCACCCACCTCTTTAATGC 57.650 47.619 0.00 0.00 0.00 3.56
3138 3671 5.050490 CGTATCTCACCCACCTCTTTAATG 58.950 45.833 0.00 0.00 0.00 1.90
3139 3672 4.443034 GCGTATCTCACCCACCTCTTTAAT 60.443 45.833 0.00 0.00 0.00 1.40
3140 3673 3.118884 GCGTATCTCACCCACCTCTTTAA 60.119 47.826 0.00 0.00 0.00 1.52
3141 3674 2.429610 GCGTATCTCACCCACCTCTTTA 59.570 50.000 0.00 0.00 0.00 1.85
3142 3675 1.207329 GCGTATCTCACCCACCTCTTT 59.793 52.381 0.00 0.00 0.00 2.52
3143 3676 0.824759 GCGTATCTCACCCACCTCTT 59.175 55.000 0.00 0.00 0.00 2.85
3144 3677 1.384989 CGCGTATCTCACCCACCTCT 61.385 60.000 0.00 0.00 0.00 3.69
3145 3678 1.065928 CGCGTATCTCACCCACCTC 59.934 63.158 0.00 0.00 0.00 3.85
3146 3679 1.379443 TCGCGTATCTCACCCACCT 60.379 57.895 5.77 0.00 0.00 4.00
3147 3680 1.065928 CTCGCGTATCTCACCCACC 59.934 63.158 5.77 0.00 0.00 4.61
3148 3681 1.589196 GCTCGCGTATCTCACCCAC 60.589 63.158 5.77 0.00 0.00 4.61
3149 3682 2.805546 GCTCGCGTATCTCACCCA 59.194 61.111 5.77 0.00 0.00 4.51
3150 3683 2.353607 CGCTCGCGTATCTCACCC 60.354 66.667 5.77 0.00 34.35 4.61
3160 3693 1.386961 GATACTTACAGACGCTCGCG 58.613 55.000 10.06 10.06 46.03 5.87
3161 3694 1.004185 TCGATACTTACAGACGCTCGC 60.004 52.381 0.00 0.00 0.00 5.03
3162 3695 3.314763 TTCGATACTTACAGACGCTCG 57.685 47.619 0.00 0.00 0.00 5.03
3163 3696 5.798934 TCTTTTTCGATACTTACAGACGCTC 59.201 40.000 0.00 0.00 0.00 5.03
3164 3697 5.706916 TCTTTTTCGATACTTACAGACGCT 58.293 37.500 0.00 0.00 0.00 5.07
3165 3698 6.307318 TCTTCTTTTTCGATACTTACAGACGC 59.693 38.462 0.00 0.00 0.00 5.19
3166 3699 7.792383 TCTTCTTTTTCGATACTTACAGACG 57.208 36.000 0.00 0.00 0.00 4.18
3173 3706 9.503399 AGGTGTATTTCTTCTTTTTCGATACTT 57.497 29.630 0.00 0.00 0.00 2.24
3174 3707 8.936864 CAGGTGTATTTCTTCTTTTTCGATACT 58.063 33.333 0.00 0.00 0.00 2.12
3175 3708 8.932791 TCAGGTGTATTTCTTCTTTTTCGATAC 58.067 33.333 0.00 0.00 0.00 2.24
3176 3709 9.151471 CTCAGGTGTATTTCTTCTTTTTCGATA 57.849 33.333 0.00 0.00 0.00 2.92
3177 3710 7.361286 GCTCAGGTGTATTTCTTCTTTTTCGAT 60.361 37.037 0.00 0.00 0.00 3.59
3178 3711 6.073222 GCTCAGGTGTATTTCTTCTTTTTCGA 60.073 38.462 0.00 0.00 0.00 3.71
3179 3712 6.073003 AGCTCAGGTGTATTTCTTCTTTTTCG 60.073 38.462 0.00 0.00 0.00 3.46
3180 3713 7.208225 AGCTCAGGTGTATTTCTTCTTTTTC 57.792 36.000 0.00 0.00 0.00 2.29
3181 3714 8.870075 ATAGCTCAGGTGTATTTCTTCTTTTT 57.130 30.769 0.00 0.00 0.00 1.94
3182 3715 7.278868 CGATAGCTCAGGTGTATTTCTTCTTTT 59.721 37.037 0.00 0.00 0.00 2.27
3183 3716 6.758886 CGATAGCTCAGGTGTATTTCTTCTTT 59.241 38.462 0.00 0.00 0.00 2.52
3184 3717 6.276847 CGATAGCTCAGGTGTATTTCTTCTT 58.723 40.000 0.00 0.00 0.00 2.52
3185 3718 5.837437 CGATAGCTCAGGTGTATTTCTTCT 58.163 41.667 0.00 0.00 0.00 2.85
3203 3736 1.880271 TGTCTCCGTCCTAGCGATAG 58.120 55.000 0.00 0.00 0.00 2.08
3204 3737 2.336945 TTGTCTCCGTCCTAGCGATA 57.663 50.000 0.00 0.00 0.00 2.92
3205 3738 1.405821 CTTTGTCTCCGTCCTAGCGAT 59.594 52.381 0.00 0.00 0.00 4.58
3206 3739 0.809385 CTTTGTCTCCGTCCTAGCGA 59.191 55.000 0.00 0.00 0.00 4.93
3207 3740 0.179134 CCTTTGTCTCCGTCCTAGCG 60.179 60.000 0.00 0.00 0.00 4.26
3208 3741 1.183549 TCCTTTGTCTCCGTCCTAGC 58.816 55.000 0.00 0.00 0.00 3.42
3209 3742 2.415625 CGTTCCTTTGTCTCCGTCCTAG 60.416 54.545 0.00 0.00 0.00 3.02
3210 3743 1.542915 CGTTCCTTTGTCTCCGTCCTA 59.457 52.381 0.00 0.00 0.00 2.94
3211 3744 0.317479 CGTTCCTTTGTCTCCGTCCT 59.683 55.000 0.00 0.00 0.00 3.85
3212 3745 0.669625 CCGTTCCTTTGTCTCCGTCC 60.670 60.000 0.00 0.00 0.00 4.79
3213 3746 1.289800 GCCGTTCCTTTGTCTCCGTC 61.290 60.000 0.00 0.00 0.00 4.79
3214 3747 1.301479 GCCGTTCCTTTGTCTCCGT 60.301 57.895 0.00 0.00 0.00 4.69
3215 3748 2.380410 CGCCGTTCCTTTGTCTCCG 61.380 63.158 0.00 0.00 0.00 4.63
3216 3749 2.033194 CCGCCGTTCCTTTGTCTCC 61.033 63.158 0.00 0.00 0.00 3.71
3217 3750 1.289800 GACCGCCGTTCCTTTGTCTC 61.290 60.000 0.00 0.00 0.00 3.36
3218 3751 1.301479 GACCGCCGTTCCTTTGTCT 60.301 57.895 0.00 0.00 0.00 3.41
3219 3752 2.664436 CGACCGCCGTTCCTTTGTC 61.664 63.158 0.00 0.00 0.00 3.18
3220 3753 2.663852 CGACCGCCGTTCCTTTGT 60.664 61.111 0.00 0.00 0.00 2.83
3232 3765 3.792047 TCGTGCCGTCTACGACCG 61.792 66.667 3.65 3.41 44.65 4.79
3236 3769 0.386352 TCAACTTCGTGCCGTCTACG 60.386 55.000 0.00 0.00 42.56 3.51
3237 3770 1.337821 CTCAACTTCGTGCCGTCTAC 58.662 55.000 0.00 0.00 0.00 2.59
3238 3771 0.388134 GCTCAACTTCGTGCCGTCTA 60.388 55.000 0.00 0.00 0.00 2.59
3239 3772 1.664965 GCTCAACTTCGTGCCGTCT 60.665 57.895 0.00 0.00 0.00 4.18
3240 3773 2.668280 GGCTCAACTTCGTGCCGTC 61.668 63.158 0.00 0.00 35.97 4.79
3241 3774 2.665185 GGCTCAACTTCGTGCCGT 60.665 61.111 0.00 0.00 35.97 5.68
3243 3776 2.665185 ACGGCTCAACTTCGTGCC 60.665 61.111 0.00 0.00 41.21 5.01
3244 3777 2.551270 CACGGCTCAACTTCGTGC 59.449 61.111 0.00 0.00 45.56 5.34
3246 3779 2.665185 GCCACGGCTCAACTTCGT 60.665 61.111 0.00 0.00 38.26 3.85
3256 3789 3.414700 CACGAGTTGAGCCACGGC 61.415 66.667 0.00 0.00 42.33 5.68
3257 3790 2.738521 CCACGAGTTGAGCCACGG 60.739 66.667 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.