Multiple sequence alignment - TraesCS4D01G268100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G268100 chr4D 100.000 6701 0 0 1 6701 439654894 439661594 0.000000e+00 12375.0
1 TraesCS4D01G268100 chr4D 98.913 92 1 0 2633 2724 439657450 439657541 1.500000e-36 165.0
2 TraesCS4D01G268100 chr4D 98.913 92 1 0 2557 2648 439657526 439657617 1.500000e-36 165.0
3 TraesCS4D01G268100 chr4B 95.111 2700 83 23 2633 5326 543865006 543867662 0.000000e+00 4209.0
4 TraesCS4D01G268100 chr4B 97.991 896 17 1 1754 2648 543864202 543865097 0.000000e+00 1554.0
5 TraesCS4D01G268100 chr4B 90.173 1211 71 15 560 1757 543862956 543864131 0.000000e+00 1533.0
6 TraesCS4D01G268100 chr4B 94.698 679 19 5 5379 6043 543867679 543868354 0.000000e+00 1038.0
7 TraesCS4D01G268100 chr4B 88.119 404 31 10 6305 6701 543868353 543868746 1.320000e-126 464.0
8 TraesCS4D01G268100 chr4B 86.364 198 18 1 6398 6595 543904073 543904261 2.450000e-49 207.0
9 TraesCS4D01G268100 chr4A 91.980 2232 114 31 3839 6042 28997024 28999218 0.000000e+00 3070.0
10 TraesCS4D01G268100 chr4A 91.274 871 46 13 185 1041 28993323 28994177 0.000000e+00 1160.0
11 TraesCS4D01G268100 chr4A 95.994 699 24 4 3146 3842 28996273 28996969 0.000000e+00 1133.0
12 TraesCS4D01G268100 chr4A 90.074 675 51 9 1090 1757 28994462 28995127 0.000000e+00 861.0
13 TraesCS4D01G268100 chr4A 93.161 541 30 7 1754 2292 28995198 28995733 0.000000e+00 787.0
14 TraesCS4D01G268100 chr4A 92.398 342 11 1 2295 2636 28995918 28996244 2.190000e-129 473.0
15 TraesCS4D01G268100 chr4A 92.174 230 14 3 6307 6532 28999220 28999449 8.380000e-84 322.0
16 TraesCS4D01G268100 chr4A 93.846 195 9 1 1 192 28992835 28993029 2.360000e-74 291.0
17 TraesCS4D01G268100 chr4A 93.750 80 5 0 2633 2712 28996165 28996244 3.280000e-23 121.0
18 TraesCS4D01G268100 chr4A 97.297 37 1 0 2738 2774 28996241 28996277 5.610000e-06 63.9
19 TraesCS4D01G268100 chr5A 87.354 427 51 3 1 425 595919494 595919919 2.810000e-133 486.0
20 TraesCS4D01G268100 chr5A 88.679 265 28 1 6042 6306 578233465 578233727 8.380000e-84 322.0
21 TraesCS4D01G268100 chr5A 87.978 183 20 2 2777 2958 685970295 685970476 1.460000e-51 215.0
22 TraesCS4D01G268100 chr2A 87.089 426 53 2 1 425 444000189 444000613 1.310000e-131 481.0
23 TraesCS4D01G268100 chr2A 91.919 99 8 0 47 145 661302518 661302420 9.060000e-29 139.0
24 TraesCS4D01G268100 chr3A 92.473 279 18 2 6030 6307 743686118 743686394 4.870000e-106 396.0
25 TraesCS4D01G268100 chr3A 90.977 266 22 1 6041 6306 41103004 41103267 2.300000e-94 357.0
26 TraesCS4D01G268100 chr7A 89.811 265 25 1 6042 6306 629766697 629766959 8.320000e-89 339.0
27 TraesCS4D01G268100 chr1A 89.591 269 25 2 6042 6309 521229410 521229676 8.320000e-89 339.0
28 TraesCS4D01G268100 chr1A 89.057 265 24 4 6042 6306 578924557 578924816 2.330000e-84 324.0
29 TraesCS4D01G268100 chr1A 88.525 183 21 0 2776 2958 366295744 366295562 8.750000e-54 222.0
30 TraesCS4D01G268100 chr1A 89.051 137 13 2 6460 6595 452262341 452262476 1.160000e-37 169.0
31 TraesCS4D01G268100 chr7B 89.057 265 24 2 6042 6306 629600817 629600558 2.330000e-84 324.0
32 TraesCS4D01G268100 chr7B 88.043 184 20 2 2777 2959 336656752 336656570 4.070000e-52 217.0
33 TraesCS4D01G268100 chr2B 88.722 266 28 1 6042 6307 547003420 547003683 2.330000e-84 324.0
34 TraesCS4D01G268100 chr2D 88.679 265 28 1 6042 6306 142434368 142434106 8.380000e-84 322.0
35 TraesCS4D01G268100 chr2D 88.525 183 21 0 2777 2959 131770222 131770404 8.750000e-54 222.0
36 TraesCS4D01G268100 chr1D 91.176 170 12 3 2777 2945 458114817 458114984 1.880000e-55 228.0
37 TraesCS4D01G268100 chr1D 88.043 184 21 1 2776 2959 199874758 199874940 4.070000e-52 217.0
38 TraesCS4D01G268100 chr5B 89.071 183 19 1 2777 2959 673099196 673099377 6.760000e-55 226.0
39 TraesCS4D01G268100 chr5B 85.897 156 11 3 1 145 92464002 92463847 9.000000e-34 156.0
40 TraesCS4D01G268100 chrUn 87.432 183 23 0 2777 2959 147936814 147936632 1.890000e-50 211.0
41 TraesCS4D01G268100 chr6B 86.139 202 19 2 6479 6680 505306184 505305992 6.810000e-50 209.0
42 TraesCS4D01G268100 chr1B 82.000 200 20 9 6397 6595 474111796 474111980 9.000000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G268100 chr4D 439654894 439661594 6700 False 12375.00 12375 100.0000 1 6701 1 chr4D.!!$F1 6700
1 TraesCS4D01G268100 chr4B 543862956 543868746 5790 False 1759.60 4209 93.2184 560 6701 5 chr4B.!!$F2 6141
2 TraesCS4D01G268100 chr4A 28992835 28999449 6614 False 828.19 3070 93.1948 1 6532 10 chr4A.!!$F1 6531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
116 120 0.040067 GTTCAGCGGTGCTTTGAAGG 60.040 55.0 10.38 0.00 36.40 3.46 F
1406 1963 0.170561 TTCTAACGAGAGACGCTGCC 59.829 55.0 0.00 0.00 46.94 4.85 F
2859 3677 0.517316 AGAGCACGAAAAATCACCGC 59.483 50.0 0.00 0.00 0.00 5.68 F
3083 3901 0.179234 TCATCTCTCTCGCTCGTCCT 59.821 55.0 0.00 0.00 0.00 3.85 F
3156 3974 0.251608 ACGGCCAGCCCATTTTACTT 60.252 50.0 2.24 0.00 0.00 2.24 F
3916 4794 0.314935 AGTTGGTGTACCGTGTACCG 59.685 55.0 10.45 0.00 39.43 4.02 F
3920 4798 0.667184 GGTGTACCGTGTACCGTTGG 60.667 60.0 10.45 0.00 33.66 3.77 F
4117 5013 1.059098 TCACAGACCAGCATTCCACT 58.941 50.0 0.00 0.00 0.00 4.00 F
5530 6443 0.107945 AGAAGAGAATGCCGGTGCTC 60.108 55.0 1.90 5.11 38.71 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1455 2012 0.613260 AGCCTGCAAGACGTAATCCA 59.387 50.000 0.00 0.00 34.07 3.41 R
3034 3852 0.242825 TTCGAACAGGTAGACCAGCG 59.757 55.000 0.66 0.00 38.89 5.18 R
4033 4916 0.468029 ACAAGGTTGGGAACAGCTGG 60.468 55.000 19.93 0.00 44.54 4.85 R
4248 5149 2.040278 AGAGGTCAGGGCCAGGAG 59.960 66.667 6.18 0.00 0.00 3.69 R
4463 5365 2.303600 ACGATGGCAACCTGGTTTACTA 59.696 45.455 9.90 3.57 0.00 1.82 R
5249 6162 0.111832 TGTCTACCCACCGTGAGACT 59.888 55.000 15.91 0.00 39.27 3.24 R
5530 6443 1.001974 TCCATTTGATATCGGCTCCGG 59.998 52.381 8.59 0.00 40.25 5.14 R
5562 6475 2.058798 CGATACATATTCGGCGTGCTT 58.941 47.619 6.85 0.00 0.00 3.91 R
6561 7494 0.036388 AGCACGTGTGATTAGTGGGG 60.036 55.000 18.38 0.00 36.48 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 87 5.434408 TCAGCTCAGCTAATGAAATGACAT 58.566 37.500 0.00 0.00 36.40 3.06
87 91 6.038382 AGCTCAGCTAATGAAATGACATTGAG 59.962 38.462 0.00 2.83 40.15 3.02
103 107 1.446966 GAGAGAGCCCACGTTCAGC 60.447 63.158 0.00 0.00 0.00 4.26
114 118 1.092921 ACGTTCAGCGGTGCTTTGAA 61.093 50.000 10.38 0.00 46.52 2.69
116 120 0.040067 GTTCAGCGGTGCTTTGAAGG 60.040 55.000 10.38 0.00 36.40 3.46
154 158 3.418047 AGTGTGGTGGCTAAATTGGTAC 58.582 45.455 0.00 0.00 0.00 3.34
203 508 7.750014 CACCTAAAAACAATATTGCAAATTGGC 59.250 33.333 24.89 0.00 38.41 4.52
224 529 3.457625 CTCTGCTGGAGGATGGGCG 62.458 68.421 0.00 0.00 38.35 6.13
261 566 4.143305 CGAAGTCGGTGAGATTGAAAACTC 60.143 45.833 0.00 0.00 35.37 3.01
264 569 3.433615 GTCGGTGAGATTGAAAACTCCAG 59.566 47.826 0.00 0.00 32.84 3.86
278 583 6.647481 TGAAAACTCCAGATGCATCAATTTTG 59.353 34.615 27.81 16.35 0.00 2.44
292 597 1.439679 ATTTTGAAGCGACGGGACTC 58.560 50.000 0.00 0.00 0.00 3.36
341 646 3.308866 GGACTCGGGAACATTTTATGTCG 59.691 47.826 0.00 0.00 44.07 4.35
392 697 3.194755 TCAGACATATTGTGCCTACGTGT 59.805 43.478 0.00 0.00 0.00 4.49
403 708 1.602377 GCCTACGTGTTTGAGCAGTTT 59.398 47.619 0.00 0.00 0.00 2.66
406 711 2.844122 ACGTGTTTGAGCAGTTTTCC 57.156 45.000 0.00 0.00 0.00 3.13
408 713 3.537580 ACGTGTTTGAGCAGTTTTCCTA 58.462 40.909 0.00 0.00 0.00 2.94
411 716 4.229876 GTGTTTGAGCAGTTTTCCTATGC 58.770 43.478 0.00 0.00 40.29 3.14
441 746 2.618709 CAGGGCATATTTTCCTCGTTCC 59.381 50.000 0.00 0.00 0.00 3.62
442 747 2.241176 AGGGCATATTTTCCTCGTTCCA 59.759 45.455 0.00 0.00 0.00 3.53
449 754 4.766404 ATTTTCCTCGTTCCATGTTCAC 57.234 40.909 0.00 0.00 0.00 3.18
450 755 3.485463 TTTCCTCGTTCCATGTTCACT 57.515 42.857 0.00 0.00 0.00 3.41
457 762 4.447290 TCGTTCCATGTTCACTCTCAAAA 58.553 39.130 0.00 0.00 0.00 2.44
461 766 6.360681 CGTTCCATGTTCACTCTCAAAATTTC 59.639 38.462 0.00 0.00 0.00 2.17
505 810 9.554395 CTCAACCCAAATTACCTTTGTAAAAAT 57.446 29.630 0.00 0.00 42.29 1.82
574 881 6.671614 TGTGTAAATATAACCCGAAAGCAG 57.328 37.500 0.00 0.00 0.00 4.24
681 989 6.862711 AGAATCGACGAGATGTAGTATGAA 57.137 37.500 3.01 0.00 40.02 2.57
750 1058 0.178926 TGGGTGACGACCTTTCCCTA 60.179 55.000 0.00 0.00 42.66 3.53
896 1217 3.036959 TCTCCCTCCCTCCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
919 1240 4.452733 CCCCCAACCTCGTCTCGC 62.453 72.222 0.00 0.00 0.00 5.03
920 1241 4.452733 CCCCAACCTCGTCTCGCC 62.453 72.222 0.00 0.00 0.00 5.54
921 1242 3.382832 CCCAACCTCGTCTCGCCT 61.383 66.667 0.00 0.00 0.00 5.52
922 1243 2.182030 CCAACCTCGTCTCGCCTC 59.818 66.667 0.00 0.00 0.00 4.70
923 1244 2.202492 CAACCTCGTCTCGCCTCG 60.202 66.667 0.00 0.00 0.00 4.63
944 1265 1.296715 CCGCTAGGGTTTCACAGCT 59.703 57.895 6.02 0.00 31.74 4.24
967 1288 3.416880 TCCTCCCCAATTCCGCCC 61.417 66.667 0.00 0.00 0.00 6.13
968 1289 3.420482 CCTCCCCAATTCCGCCCT 61.420 66.667 0.00 0.00 0.00 5.19
969 1290 2.124151 CTCCCCAATTCCGCCCTG 60.124 66.667 0.00 0.00 0.00 4.45
970 1291 4.440829 TCCCCAATTCCGCCCTGC 62.441 66.667 0.00 0.00 0.00 4.85
1330 1887 1.520342 GTGGACATCGCTCTGCTCC 60.520 63.158 0.00 0.00 0.00 4.70
1332 1889 2.775856 GGACATCGCTCTGCTCCGA 61.776 63.158 0.00 0.00 37.91 4.55
1354 1911 1.074405 TGCCTGCCAGATTGAGTTTCT 59.926 47.619 0.00 0.00 0.00 2.52
1368 1925 3.204526 GAGTTTCTCCATCTGCCATCTG 58.795 50.000 0.00 0.00 0.00 2.90
1386 1943 2.588877 CCGCGATCCCGAATTGCT 60.589 61.111 8.23 0.00 41.94 3.91
1392 1949 2.612212 GCGATCCCGAATTGCTTTCTAA 59.388 45.455 0.00 0.00 41.04 2.10
1396 1953 3.259064 TCCCGAATTGCTTTCTAACGAG 58.741 45.455 0.00 0.00 31.73 4.18
1400 1957 4.031878 CCGAATTGCTTTCTAACGAGAGAC 59.968 45.833 0.00 0.00 31.77 3.36
1406 1963 0.170561 TTCTAACGAGAGACGCTGCC 59.829 55.000 0.00 0.00 46.94 4.85
1421 1978 3.961182 CGCTGCCGTAGATTAGAGTTTA 58.039 45.455 0.00 0.00 0.00 2.01
1436 1993 4.194640 AGAGTTTACGCTGATCCGTAGTA 58.805 43.478 4.74 0.00 43.59 1.82
1443 2000 3.131577 ACGCTGATCCGTAGTATTTTCCA 59.868 43.478 0.00 0.00 40.08 3.53
1447 2004 5.611374 CTGATCCGTAGTATTTTCCATGGT 58.389 41.667 12.58 0.00 0.00 3.55
1449 2006 7.127012 TGATCCGTAGTATTTTCCATGGTTA 57.873 36.000 12.58 0.00 0.00 2.85
1455 2012 8.899771 CCGTAGTATTTTCCATGGTTATTCTTT 58.100 33.333 12.58 0.00 0.00 2.52
1471 2028 5.551760 ATTCTTTGGATTACGTCTTGCAG 57.448 39.130 0.00 0.00 0.00 4.41
1476 2033 2.235155 TGGATTACGTCTTGCAGGCTAA 59.765 45.455 0.00 0.00 0.00 3.09
1517 2074 7.818642 AGTTAGATCCGATCCTTATTTCGTAG 58.181 38.462 4.67 0.00 33.60 3.51
1518 2075 7.664731 AGTTAGATCCGATCCTTATTTCGTAGA 59.335 37.037 4.67 0.00 33.60 2.59
1519 2076 6.503589 AGATCCGATCCTTATTTCGTAGAG 57.496 41.667 4.67 0.00 38.43 2.43
1520 2077 5.416326 AGATCCGATCCTTATTTCGTAGAGG 59.584 44.000 4.67 0.00 38.43 3.69
1521 2078 4.467769 TCCGATCCTTATTTCGTAGAGGT 58.532 43.478 0.00 0.00 38.43 3.85
1522 2079 5.624159 TCCGATCCTTATTTCGTAGAGGTA 58.376 41.667 0.00 0.00 38.43 3.08
1543 2100 5.163550 GGTAGACTCATACATGTGTGCACTA 60.164 44.000 19.41 15.20 34.96 2.74
1550 2107 5.524646 TCATACATGTGTGCACTATCATGTG 59.475 40.000 35.91 28.23 46.41 3.21
1552 2109 2.857186 TGTGTGCACTATCATGTGGT 57.143 45.000 19.41 0.00 38.31 4.16
1558 2115 4.020662 TGTGCACTATCATGTGGTTCAGTA 60.021 41.667 19.41 0.00 38.31 2.74
1576 2134 9.309516 GGTTCAGTAAAAATATCAGTCGTATGA 57.690 33.333 0.00 0.00 0.00 2.15
1592 2150 5.065218 GTCGTATGATTTCTGTTCTGCCATT 59.935 40.000 0.00 0.00 0.00 3.16
1593 2151 5.294306 TCGTATGATTTCTGTTCTGCCATTC 59.706 40.000 0.00 0.00 0.00 2.67
1619 2177 3.817084 TGCAGATTGTATAAGGCTGCATC 59.183 43.478 20.85 0.00 45.30 3.91
1625 2183 3.717707 TGTATAAGGCTGCATCGAAGTC 58.282 45.455 0.50 0.00 0.00 3.01
1633 2191 1.736126 CTGCATCGAAGTCAATGTGCT 59.264 47.619 5.13 0.00 33.95 4.40
1637 2195 4.395854 TGCATCGAAGTCAATGTGCTATTT 59.604 37.500 5.13 0.00 33.95 1.40
1641 2199 4.455533 TCGAAGTCAATGTGCTATTTTGCT 59.544 37.500 0.00 0.00 0.00 3.91
1642 2200 5.641636 TCGAAGTCAATGTGCTATTTTGCTA 59.358 36.000 0.00 0.00 0.00 3.49
1647 2205 7.331026 AGTCAATGTGCTATTTTGCTACTCTA 58.669 34.615 0.00 0.00 0.00 2.43
1651 2209 8.615211 CAATGTGCTATTTTGCTACTCTATTCA 58.385 33.333 0.00 0.00 0.00 2.57
1664 2222 9.755804 TGCTACTCTATTCAGTTTATTCATCTG 57.244 33.333 0.00 0.00 0.00 2.90
1720 2282 6.101332 TCATCAAATAATGAAAACTGCTGCC 58.899 36.000 0.00 0.00 42.54 4.85
1726 2288 2.203337 AAAACTGCTGCCTGCCGA 60.203 55.556 0.00 0.00 42.00 5.54
1739 2301 2.548480 GCCTGCCGATTCATAGTTAACC 59.452 50.000 0.88 0.00 0.00 2.85
1750 2312 8.477709 CGATTCATAGTTAACCGTAGCTTAAAG 58.522 37.037 0.88 0.00 0.00 1.85
1807 2444 6.999950 TCTATTGGTTTAGTGCACTAAGTGA 58.000 36.000 31.89 19.48 39.36 3.41
1877 2514 1.921869 CTGATAAAGGTGGCCGGGGT 61.922 60.000 2.18 0.00 0.00 4.95
1889 2526 2.190841 CCGGGGTTTGCGACAGTTT 61.191 57.895 0.00 0.00 0.00 2.66
1906 2543 6.645415 CGACAGTTTAGTATGAAAGGTCAGTT 59.355 38.462 0.00 0.00 37.14 3.16
2087 2725 7.147672 TGCATTCTAGAGGTCATGTCTATTGAA 60.148 37.037 10.41 10.41 0.00 2.69
2117 2756 3.890756 ACACTTTCTGCAACATCAATGGA 59.109 39.130 0.00 0.00 0.00 3.41
2204 2843 6.787085 ACATATAATGAGGTTAGCGCTTTC 57.213 37.500 18.68 9.30 0.00 2.62
2467 3285 2.870175 TGTGGTCCACCTGGTTTAATG 58.130 47.619 19.57 0.00 36.82 1.90
2470 3288 4.086457 GTGGTCCACCTGGTTTAATGAAT 58.914 43.478 11.30 0.00 36.82 2.57
2648 3466 4.873817 TGGAAGTCATGAAACTGCAAATG 58.126 39.130 0.00 0.00 0.00 2.32
2649 3467 4.341806 TGGAAGTCATGAAACTGCAAATGT 59.658 37.500 0.00 0.00 0.00 2.71
2650 3468 5.534278 TGGAAGTCATGAAACTGCAAATGTA 59.466 36.000 0.00 0.00 0.00 2.29
2651 3469 5.858581 GGAAGTCATGAAACTGCAAATGTAC 59.141 40.000 0.00 0.00 0.00 2.90
2652 3470 6.389830 AAGTCATGAAACTGCAAATGTACA 57.610 33.333 0.00 0.00 0.00 2.90
2653 3471 6.579666 AGTCATGAAACTGCAAATGTACAT 57.420 33.333 1.41 1.41 0.00 2.29
2654 3472 6.384224 AGTCATGAAACTGCAAATGTACATG 58.616 36.000 9.63 0.00 35.65 3.21
2655 3473 5.061311 GTCATGAAACTGCAAATGTACATGC 59.939 40.000 9.63 11.83 42.86 4.06
2657 3475 4.297510 TGAAACTGCAAATGTACATGCAC 58.702 39.130 17.98 10.36 46.87 4.57
2658 3476 4.202090 TGAAACTGCAAATGTACATGCACA 60.202 37.500 17.98 12.46 46.87 4.57
2659 3477 3.287312 ACTGCAAATGTACATGCACAC 57.713 42.857 17.98 4.32 46.87 3.82
2660 3478 2.030007 ACTGCAAATGTACATGCACACC 60.030 45.455 17.98 2.14 46.87 4.16
2661 3479 1.959282 TGCAAATGTACATGCACACCA 59.041 42.857 17.98 4.43 46.87 4.17
2662 3480 2.561858 TGCAAATGTACATGCACACCAT 59.438 40.909 17.98 0.00 46.87 3.55
2687 3505 6.500684 GTGTAACATCACCATTTGATCACT 57.499 37.500 0.00 0.00 43.68 3.41
2688 3506 7.609760 GTGTAACATCACCATTTGATCACTA 57.390 36.000 0.00 0.00 43.68 2.74
2689 3507 8.039603 GTGTAACATCACCATTTGATCACTAA 57.960 34.615 0.00 0.00 43.68 2.24
2690 3508 8.177663 GTGTAACATCACCATTTGATCACTAAG 58.822 37.037 0.00 0.00 43.68 2.18
2691 3509 8.100164 TGTAACATCACCATTTGATCACTAAGA 58.900 33.333 0.00 0.00 43.68 2.10
2692 3510 9.113838 GTAACATCACCATTTGATCACTAAGAT 57.886 33.333 0.00 0.00 43.68 2.40
2707 3525 7.912056 TCACTAAGATCTTTTGTGATGGAAG 57.088 36.000 26.35 13.49 33.40 3.46
2708 3526 7.453393 TCACTAAGATCTTTTGTGATGGAAGT 58.547 34.615 26.35 13.99 33.40 3.01
2709 3527 7.604164 TCACTAAGATCTTTTGTGATGGAAGTC 59.396 37.037 26.35 0.00 33.40 3.01
2710 3528 7.388776 CACTAAGATCTTTTGTGATGGAAGTCA 59.611 37.037 24.81 0.78 31.94 3.41
2711 3529 8.105829 ACTAAGATCTTTTGTGATGGAAGTCAT 58.894 33.333 14.36 0.00 39.13 3.06
2712 3530 6.754702 AGATCTTTTGTGATGGAAGTCATG 57.245 37.500 0.00 0.00 35.97 3.07
2713 3531 6.479006 AGATCTTTTGTGATGGAAGTCATGA 58.521 36.000 0.00 0.00 35.97 3.07
2714 3532 6.944290 AGATCTTTTGTGATGGAAGTCATGAA 59.056 34.615 0.00 0.00 35.97 2.57
2715 3533 6.957920 TCTTTTGTGATGGAAGTCATGAAA 57.042 33.333 0.00 0.00 35.97 2.69
2716 3534 6.738114 TCTTTTGTGATGGAAGTCATGAAAC 58.262 36.000 0.00 0.00 35.97 2.78
2717 3535 6.547141 TCTTTTGTGATGGAAGTCATGAAACT 59.453 34.615 0.00 0.00 35.97 2.66
2718 3536 5.694231 TTGTGATGGAAGTCATGAAACTG 57.306 39.130 0.00 0.00 35.97 3.16
2719 3537 3.503363 TGTGATGGAAGTCATGAAACTGC 59.497 43.478 0.00 0.00 35.97 4.40
2720 3538 3.503363 GTGATGGAAGTCATGAAACTGCA 59.497 43.478 0.00 0.00 35.97 4.41
2721 3539 4.022935 GTGATGGAAGTCATGAAACTGCAA 60.023 41.667 0.00 0.00 35.97 4.08
2722 3540 4.583907 TGATGGAAGTCATGAAACTGCAAA 59.416 37.500 0.00 0.00 35.97 3.68
2723 3541 5.244402 TGATGGAAGTCATGAAACTGCAAAT 59.756 36.000 0.00 0.00 35.97 2.32
2724 3542 6.433716 TGATGGAAGTCATGAAACTGCAAATA 59.566 34.615 0.00 0.00 35.97 1.40
2725 3543 6.839124 TGGAAGTCATGAAACTGCAAATAT 57.161 33.333 0.00 0.00 0.00 1.28
2726 3544 6.623486 TGGAAGTCATGAAACTGCAAATATG 58.377 36.000 0.00 0.00 0.00 1.78
2727 3545 6.209192 TGGAAGTCATGAAACTGCAAATATGT 59.791 34.615 0.00 0.00 0.00 2.29
2728 3546 7.092716 GGAAGTCATGAAACTGCAAATATGTT 58.907 34.615 0.00 0.00 0.00 2.71
2732 3550 7.758076 AGTCATGAAACTGCAAATATGTTGATG 59.242 33.333 0.00 0.00 0.00 3.07
2768 3586 4.270834 TCCGCTAGTCTTGTGAGTTATCT 58.729 43.478 0.00 0.00 0.00 1.98
2847 3665 0.583438 CACACTTGAACCAGAGCACG 59.417 55.000 0.00 0.00 0.00 5.34
2853 3671 3.632145 ACTTGAACCAGAGCACGAAAAAT 59.368 39.130 0.00 0.00 0.00 1.82
2857 3675 1.880027 ACCAGAGCACGAAAAATCACC 59.120 47.619 0.00 0.00 0.00 4.02
2859 3677 0.517316 AGAGCACGAAAAATCACCGC 59.483 50.000 0.00 0.00 0.00 5.68
2880 3698 3.097910 CAAATGCGCCTAATGTGTAACG 58.902 45.455 4.18 0.00 42.39 3.18
2906 3724 1.098050 ACTGATGCTCGAATTTGGCC 58.902 50.000 0.00 0.00 0.00 5.36
2908 3726 0.676466 TGATGCTCGAATTTGGCCGT 60.676 50.000 0.00 0.00 0.00 5.68
2961 3779 2.969238 CGGGATGACATGGCGCTC 60.969 66.667 7.64 0.00 0.00 5.03
2967 3785 1.361668 ATGACATGGCGCTCGTTGAC 61.362 55.000 7.64 1.35 0.00 3.18
2971 3789 1.738099 ATGGCGCTCGTTGACAGAC 60.738 57.895 7.64 0.00 0.00 3.51
3001 3819 2.325082 GCGACACACGGCCATTTCT 61.325 57.895 2.24 0.00 42.83 2.52
3002 3820 1.497278 CGACACACGGCCATTTCTG 59.503 57.895 2.24 0.00 38.46 3.02
3034 3852 3.728600 CGTACATGTTTAAGTTGGTCGC 58.271 45.455 2.30 0.00 0.00 5.19
3038 3856 0.584396 TGTTTAAGTTGGTCGCGCTG 59.416 50.000 5.56 0.00 0.00 5.18
3080 3898 1.400142 CAGTTCATCTCTCTCGCTCGT 59.600 52.381 0.00 0.00 0.00 4.18
3081 3899 1.668751 AGTTCATCTCTCTCGCTCGTC 59.331 52.381 0.00 0.00 0.00 4.20
3082 3900 1.018148 TTCATCTCTCTCGCTCGTCC 58.982 55.000 0.00 0.00 0.00 4.79
3083 3901 0.179234 TCATCTCTCTCGCTCGTCCT 59.821 55.000 0.00 0.00 0.00 3.85
3084 3902 0.586319 CATCTCTCTCGCTCGTCCTC 59.414 60.000 0.00 0.00 0.00 3.71
3091 3909 1.487452 CTCGCTCGTCCTCTCTCTCG 61.487 65.000 0.00 0.00 0.00 4.04
3101 3919 4.544689 CTCTCTCGCCTGCGACCG 62.545 72.222 10.61 2.15 44.01 4.79
3150 3968 3.978193 TGGAACGGCCAGCCCATT 61.978 61.111 2.24 0.00 43.33 3.16
3151 3969 2.679996 GGAACGGCCAGCCCATTT 60.680 61.111 2.24 0.00 36.34 2.32
3156 3974 0.251608 ACGGCCAGCCCATTTTACTT 60.252 50.000 2.24 0.00 0.00 2.24
3179 3997 9.102453 ACTTCTACTCTTTAAACTGGTATCCTT 57.898 33.333 0.00 0.00 0.00 3.36
3362 4180 5.573337 AGAGCTCATACATTTTGCCTTTC 57.427 39.130 17.77 0.00 0.00 2.62
3463 4281 8.275015 TCCGAATGCAGTTAAGAAATATGAAA 57.725 30.769 0.00 0.00 0.00 2.69
3689 4507 3.119955 GGTTGCGTCTATTTTCCCTCAAC 60.120 47.826 0.00 0.00 33.78 3.18
3760 4579 3.071167 GGGTCTATTTACAGGCGGATCTT 59.929 47.826 0.00 0.00 0.00 2.40
3916 4794 0.314935 AGTTGGTGTACCGTGTACCG 59.685 55.000 10.45 0.00 39.43 4.02
3920 4798 0.667184 GGTGTACCGTGTACCGTTGG 60.667 60.000 10.45 0.00 33.66 3.77
4004 4882 4.495422 CTGTCTACAGTTTTCGGTATGCT 58.505 43.478 1.81 0.00 39.09 3.79
4022 4905 9.049523 CGGTATGCTGCAGATATTTGATATATT 57.950 33.333 20.43 0.00 0.00 1.28
4091 4975 3.441222 TGTGCCTGCTTCTGTCAATTATG 59.559 43.478 0.00 0.00 0.00 1.90
4117 5013 1.059098 TCACAGACCAGCATTCCACT 58.941 50.000 0.00 0.00 0.00 4.00
4227 5127 5.764686 TCACACGTAGTTCTTACCAGAGTTA 59.235 40.000 0.00 0.00 41.61 2.24
4302 5203 2.166459 CGAGGTTCTAGCATGAAGACCA 59.834 50.000 0.00 0.00 0.00 4.02
4463 5365 5.308237 AGTTCCTACTCTCCACATGTTCTTT 59.692 40.000 0.00 0.00 0.00 2.52
4820 5726 5.106396 ACAGTTCTGCTTTCTGTGCATAATC 60.106 40.000 0.00 0.00 40.29 1.75
4970 5876 3.304829 ACTTTCCTCTGGAGATAGAGCC 58.695 50.000 0.00 0.00 42.26 4.70
4983 5889 5.461032 AGATAGAGCCTTCCAGTTTATCG 57.539 43.478 0.00 0.00 0.00 2.92
4991 5897 6.831976 AGCCTTCCAGTTTATCGAAGAATAT 58.168 36.000 0.00 0.00 43.58 1.28
4995 5901 7.095439 CCTTCCAGTTTATCGAAGAATATCTGC 60.095 40.741 0.00 0.00 43.58 4.26
4996 5902 6.816136 TCCAGTTTATCGAAGAATATCTGCA 58.184 36.000 0.00 0.00 43.58 4.41
5057 5963 8.306761 GCCTCTTATCACATTTAAAATATGGGG 58.693 37.037 0.00 0.00 0.00 4.96
5058 5964 9.586732 CCTCTTATCACATTTAAAATATGGGGA 57.413 33.333 0.00 0.00 0.00 4.81
5163 6075 5.185454 CAGTGATATGGTTAAACTGGAGCA 58.815 41.667 0.00 0.00 35.66 4.26
5213 6126 9.196552 GCTGCTGAAACAATTTTAAGTTTAGAT 57.803 29.630 0.00 0.00 38.01 1.98
5249 6162 9.679661 ACTAATATTGATACACATGTTTGGTCA 57.320 29.630 0.00 0.00 0.00 4.02
5432 6345 4.142600 GGTGTCCTGACTATTTTGACATGC 60.143 45.833 0.00 0.00 38.14 4.06
5527 6440 2.162408 GGAAAAGAAGAGAATGCCGGTG 59.838 50.000 1.90 0.00 0.00 4.94
5530 6443 0.107945 AGAAGAGAATGCCGGTGCTC 60.108 55.000 1.90 5.11 38.71 4.26
5562 6475 0.749091 CAAATGGATGCGAGGGCTCA 60.749 55.000 0.00 0.00 40.82 4.26
5577 6490 0.041839 GCTCAAGCACGCCGAATATG 60.042 55.000 0.00 0.00 41.59 1.78
5643 6556 4.876107 ACAAATAGATTACCAAGCTCACCG 59.124 41.667 0.00 0.00 0.00 4.94
5727 6644 4.272261 GGGCGTTTGTTTTGATTGTCATTT 59.728 37.500 0.00 0.00 0.00 2.32
5802 6719 2.420269 GCCTGTAAAGGGGAGAAGTAGC 60.420 54.545 0.00 0.00 0.00 3.58
5804 6721 3.519913 CCTGTAAAGGGGAGAAGTAGCTT 59.480 47.826 0.00 0.00 0.00 3.74
5837 6754 7.588497 TTAGCTCTGCACTAGATTGATAGAA 57.412 36.000 0.00 0.00 34.21 2.10
5906 6831 3.596214 TCCTAACGGACTTTGAATCTGC 58.404 45.455 0.00 0.00 33.30 4.26
5978 6903 8.757164 AGCAATGTAAAATAGTTACCTTTTGC 57.243 30.769 14.38 14.38 36.11 3.68
5998 6923 3.218398 GCTTTCTGTGAAAATGTCGTCG 58.782 45.455 0.00 0.00 0.00 5.12
6050 6977 6.954487 TTTTTGTTCTTTCCTACTCCCTTC 57.046 37.500 0.00 0.00 0.00 3.46
6051 6978 3.955650 TGTTCTTTCCTACTCCCTTCG 57.044 47.619 0.00 0.00 0.00 3.79
6052 6979 3.236896 TGTTCTTTCCTACTCCCTTCGT 58.763 45.455 0.00 0.00 0.00 3.85
6053 6980 3.257624 TGTTCTTTCCTACTCCCTTCGTC 59.742 47.826 0.00 0.00 0.00 4.20
6054 6981 2.454538 TCTTTCCTACTCCCTTCGTCC 58.545 52.381 0.00 0.00 0.00 4.79
6055 6982 1.481363 CTTTCCTACTCCCTTCGTCCC 59.519 57.143 0.00 0.00 0.00 4.46
6056 6983 0.325016 TTCCTACTCCCTTCGTCCCC 60.325 60.000 0.00 0.00 0.00 4.81
6057 6984 2.125961 CCTACTCCCTTCGTCCCCG 61.126 68.421 0.00 0.00 0.00 5.73
6058 6985 1.077212 CTACTCCCTTCGTCCCCGA 60.077 63.158 0.00 0.00 42.41 5.14
6069 6996 2.726821 TCGTCCCCGAATAAGTGTACT 58.273 47.619 0.00 0.00 40.86 2.73
6070 6997 3.091545 TCGTCCCCGAATAAGTGTACTT 58.908 45.455 2.51 2.51 40.86 2.24
6071 6998 3.129287 TCGTCCCCGAATAAGTGTACTTC 59.871 47.826 0.00 0.00 40.86 3.01
6072 6999 3.129988 CGTCCCCGAATAAGTGTACTTCT 59.870 47.826 0.00 0.00 35.22 2.85
6073 7000 4.336433 CGTCCCCGAATAAGTGTACTTCTA 59.664 45.833 0.00 0.00 35.22 2.10
6074 7001 5.586339 GTCCCCGAATAAGTGTACTTCTAC 58.414 45.833 0.00 0.00 37.40 2.59
6075 7002 4.646492 TCCCCGAATAAGTGTACTTCTACC 59.354 45.833 0.00 0.00 37.40 3.18
6076 7003 4.648307 CCCCGAATAAGTGTACTTCTACCT 59.352 45.833 0.00 0.00 37.40 3.08
6077 7004 5.128335 CCCCGAATAAGTGTACTTCTACCTT 59.872 44.000 0.00 0.00 37.40 3.50
6078 7005 6.351626 CCCCGAATAAGTGTACTTCTACCTTT 60.352 42.308 0.00 0.00 37.40 3.11
6079 7006 7.101700 CCCGAATAAGTGTACTTCTACCTTTT 58.898 38.462 0.00 0.00 37.40 2.27
6080 7007 8.253113 CCCGAATAAGTGTACTTCTACCTTTTA 58.747 37.037 0.00 0.00 37.40 1.52
6081 7008 9.813446 CCGAATAAGTGTACTTCTACCTTTTAT 57.187 33.333 0.00 0.00 37.40 1.40
6087 7014 9.654663 AAGTGTACTTCTACCTTTTATGCTAAG 57.345 33.333 0.00 0.00 0.00 2.18
6088 7015 8.813951 AGTGTACTTCTACCTTTTATGCTAAGT 58.186 33.333 0.00 0.00 0.00 2.24
6089 7016 9.085250 GTGTACTTCTACCTTTTATGCTAAGTC 57.915 37.037 0.00 0.00 0.00 3.01
6090 7017 8.809066 TGTACTTCTACCTTTTATGCTAAGTCA 58.191 33.333 0.00 0.00 0.00 3.41
6091 7018 9.649167 GTACTTCTACCTTTTATGCTAAGTCAA 57.351 33.333 0.00 0.00 0.00 3.18
6093 7020 9.220767 ACTTCTACCTTTTATGCTAAGTCAAAG 57.779 33.333 0.00 0.00 0.00 2.77
6094 7021 9.220767 CTTCTACCTTTTATGCTAAGTCAAAGT 57.779 33.333 0.00 0.00 0.00 2.66
6095 7022 9.569122 TTCTACCTTTTATGCTAAGTCAAAGTT 57.431 29.630 0.00 0.00 0.00 2.66
6096 7023 9.569122 TCTACCTTTTATGCTAAGTCAAAGTTT 57.431 29.630 0.00 0.00 0.00 2.66
6206 7133 9.120538 TGAATTTAGTGATCCTAATTTAGTGCC 57.879 33.333 2.88 0.00 35.59 5.01
6207 7134 9.120538 GAATTTAGTGATCCTAATTTAGTGCCA 57.879 33.333 2.88 0.00 35.59 4.92
6208 7135 9.646522 AATTTAGTGATCCTAATTTAGTGCCAT 57.353 29.630 2.88 0.00 35.59 4.40
6245 7172 9.197306 ACTTTTTCCTATAAAGTTGGTCAAAGT 57.803 29.630 0.00 0.00 41.69 2.66
6287 7214 8.848474 AATACAAAAGCTAGATGTACACTTGT 57.152 30.769 0.00 1.31 32.80 3.16
6288 7215 8.848474 ATACAAAAGCTAGATGTACACTTGTT 57.152 30.769 0.00 0.00 32.80 2.83
6289 7216 7.568199 ACAAAAGCTAGATGTACACTTGTTT 57.432 32.000 0.00 0.95 0.00 2.83
6290 7217 8.671384 ACAAAAGCTAGATGTACACTTGTTTA 57.329 30.769 0.00 0.00 0.00 2.01
6291 7218 9.284968 ACAAAAGCTAGATGTACACTTGTTTAT 57.715 29.630 0.00 0.00 0.00 1.40
6292 7219 9.546909 CAAAAGCTAGATGTACACTTGTTTATG 57.453 33.333 0.00 0.00 0.00 1.90
6293 7220 7.849804 AAGCTAGATGTACACTTGTTTATGG 57.150 36.000 0.00 0.00 0.00 2.74
6294 7221 7.182817 AGCTAGATGTACACTTGTTTATGGA 57.817 36.000 0.00 0.00 0.00 3.41
6295 7222 7.042335 AGCTAGATGTACACTTGTTTATGGAC 58.958 38.462 0.00 0.00 0.00 4.02
6296 7223 6.019801 GCTAGATGTACACTTGTTTATGGACG 60.020 42.308 0.00 0.00 31.76 4.79
6297 7224 5.175859 AGATGTACACTTGTTTATGGACGG 58.824 41.667 0.00 0.00 31.76 4.79
6298 7225 4.603989 TGTACACTTGTTTATGGACGGA 57.396 40.909 0.00 0.00 31.76 4.69
6299 7226 4.562082 TGTACACTTGTTTATGGACGGAG 58.438 43.478 0.00 0.00 31.76 4.63
6300 7227 3.053831 ACACTTGTTTATGGACGGAGG 57.946 47.619 0.00 0.00 0.00 4.30
6301 7228 2.290071 ACACTTGTTTATGGACGGAGGG 60.290 50.000 0.00 0.00 0.00 4.30
6302 7229 2.027561 CACTTGTTTATGGACGGAGGGA 60.028 50.000 0.00 0.00 0.00 4.20
6303 7230 2.236395 ACTTGTTTATGGACGGAGGGAG 59.764 50.000 0.00 0.00 0.00 4.30
6304 7231 1.946984 TGTTTATGGACGGAGGGAGT 58.053 50.000 0.00 0.00 0.00 3.85
6305 7232 3.104519 TGTTTATGGACGGAGGGAGTA 57.895 47.619 0.00 0.00 0.00 2.59
6350 7277 3.849951 ATACGGCAGCACTCCCCG 61.850 66.667 0.00 5.08 46.97 5.73
6398 7326 3.748048 AGGTCAATCGTGAAATGTCTGTG 59.252 43.478 0.00 0.00 34.87 3.66
6401 7329 5.505654 GGTCAATCGTGAAATGTCTGTGTTT 60.506 40.000 0.00 0.00 34.87 2.83
6409 7340 6.498304 GTGAAATGTCTGTGTTTGAAGTGAT 58.502 36.000 0.00 0.00 0.00 3.06
6475 7408 4.154015 CCATCTGAACAAATGCGACACTTA 59.846 41.667 0.00 0.00 0.00 2.24
6493 7426 3.833070 ACTTAGGAGAGATGTGTCGGTTT 59.167 43.478 0.00 0.00 0.00 3.27
6551 7484 1.009903 CGCACGACGGTTATGGACAA 61.010 55.000 0.00 0.00 38.44 3.18
6555 7488 0.461339 CGACGGTTATGGACAAGGGG 60.461 60.000 0.00 0.00 0.00 4.79
6556 7489 0.906775 GACGGTTATGGACAAGGGGA 59.093 55.000 0.00 0.00 0.00 4.81
6557 7490 0.909623 ACGGTTATGGACAAGGGGAG 59.090 55.000 0.00 0.00 0.00 4.30
6558 7491 1.200519 CGGTTATGGACAAGGGGAGA 58.799 55.000 0.00 0.00 0.00 3.71
6559 7492 1.768870 CGGTTATGGACAAGGGGAGAT 59.231 52.381 0.00 0.00 0.00 2.75
6560 7493 2.172717 CGGTTATGGACAAGGGGAGATT 59.827 50.000 0.00 0.00 0.00 2.40
6561 7494 3.744530 CGGTTATGGACAAGGGGAGATTC 60.745 52.174 0.00 0.00 0.00 2.52
6575 7508 3.809905 GGAGATTCCCCACTAATCACAC 58.190 50.000 0.00 0.00 36.09 3.82
6597 7530 6.015504 CACGTGCTAATTAATCACAACACTC 58.984 40.000 0.82 0.00 0.00 3.51
6598 7531 5.932303 ACGTGCTAATTAATCACAACACTCT 59.068 36.000 14.27 0.00 0.00 3.24
6599 7532 6.426937 ACGTGCTAATTAATCACAACACTCTT 59.573 34.615 14.27 0.00 0.00 2.85
6600 7533 6.955963 CGTGCTAATTAATCACAACACTCTTC 59.044 38.462 14.27 0.00 0.00 2.87
6616 7549 5.014228 ACACTCTTCCTAATTTAGGCTTGGT 59.986 40.000 16.38 10.17 45.82 3.67
6620 7553 7.127339 ACTCTTCCTAATTTAGGCTTGGTCATA 59.873 37.037 16.38 0.00 45.82 2.15
6647 7580 5.936686 ATCATCTCATAAATGTTCAGGCG 57.063 39.130 0.00 0.00 0.00 5.52
6654 7587 2.774439 AAATGTTCAGGCGTTGTCAC 57.226 45.000 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 9.303537 CATCAATGTACATTGCACATTTATCAA 57.696 29.630 34.12 18.33 42.52 2.57
56 60 5.990386 TCATTTCATTAGCTGAGCTGATCTC 59.010 40.000 18.79 0.00 40.10 2.75
83 87 0.318441 CTGAACGTGGGCTCTCTCAA 59.682 55.000 0.00 0.00 0.00 3.02
87 91 2.811317 CGCTGAACGTGGGCTCTC 60.811 66.667 0.00 0.00 36.87 3.20
103 107 1.234821 TAGCAACCTTCAAAGCACCG 58.765 50.000 0.00 0.00 0.00 4.94
114 118 3.134804 CACTTGCCCTACTATAGCAACCT 59.865 47.826 0.00 0.00 41.35 3.50
116 120 3.871594 CACACTTGCCCTACTATAGCAAC 59.128 47.826 0.00 0.00 41.35 4.17
154 158 5.819379 TGCTTCTACTTGAATCTAGCATTGG 59.181 40.000 0.00 0.00 33.71 3.16
229 534 2.811317 CCGACTTCGCTGGAGTGC 60.811 66.667 0.00 0.00 38.18 4.40
247 552 4.654915 TGCATCTGGAGTTTTCAATCTCA 58.345 39.130 0.00 0.00 32.93 3.27
248 553 5.356190 TGATGCATCTGGAGTTTTCAATCTC 59.644 40.000 26.32 0.00 0.00 2.75
292 597 3.687698 ACCAAAATCCCGACTAAATCACG 59.312 43.478 0.00 0.00 0.00 4.35
297 602 3.592059 CTCGACCAAAATCCCGACTAAA 58.408 45.455 0.00 0.00 0.00 1.85
328 633 3.694566 GCCCTCCTTCGACATAAAATGTT 59.305 43.478 0.00 0.00 45.03 2.71
331 636 3.054361 ACTGCCCTCCTTCGACATAAAAT 60.054 43.478 0.00 0.00 0.00 1.82
341 646 1.272147 ACATCCAAACTGCCCTCCTTC 60.272 52.381 0.00 0.00 0.00 3.46
374 679 4.320023 TCAAACACGTAGGCACAATATGT 58.680 39.130 0.00 0.00 0.00 2.29
392 697 4.216257 GTCAGCATAGGAAAACTGCTCAAA 59.784 41.667 0.00 0.00 44.09 2.69
411 716 2.048444 AATATGCCCTGCTGTGTCAG 57.952 50.000 0.00 0.00 34.12 3.51
412 717 2.512692 AAATATGCCCTGCTGTGTCA 57.487 45.000 0.00 0.00 0.00 3.58
420 725 2.618709 GGAACGAGGAAAATATGCCCTG 59.381 50.000 0.00 0.00 0.00 4.45
422 727 2.650322 TGGAACGAGGAAAATATGCCC 58.350 47.619 0.00 0.00 0.00 5.36
425 730 6.094048 AGTGAACATGGAACGAGGAAAATATG 59.906 38.462 0.00 0.00 0.00 1.78
441 746 7.112565 CACGAAGAAATTTTGAGAGTGAACATG 59.887 37.037 0.00 0.00 0.00 3.21
442 747 7.134815 CACGAAGAAATTTTGAGAGTGAACAT 58.865 34.615 0.00 0.00 0.00 2.71
449 754 5.689383 TTCCCACGAAGAAATTTTGAGAG 57.311 39.130 0.00 0.00 0.00 3.20
450 755 6.648879 ATTTCCCACGAAGAAATTTTGAGA 57.351 33.333 0.00 0.00 40.23 3.27
457 762 3.509967 GGGTGAATTTCCCACGAAGAAAT 59.490 43.478 12.83 0.00 43.95 2.17
461 766 2.084546 GAGGGTGAATTTCCCACGAAG 58.915 52.381 17.93 0.00 46.82 3.79
574 881 9.559958 CAAGTACTAAATGGATCACAAATTCAC 57.440 33.333 0.00 0.00 0.00 3.18
674 982 8.478066 GGGCTGGATATTTTTCTTTTTCATACT 58.522 33.333 0.00 0.00 0.00 2.12
675 983 7.435192 CGGGCTGGATATTTTTCTTTTTCATAC 59.565 37.037 0.00 0.00 0.00 2.39
676 984 7.488322 CGGGCTGGATATTTTTCTTTTTCATA 58.512 34.615 0.00 0.00 0.00 2.15
681 989 3.428862 CGCGGGCTGGATATTTTTCTTTT 60.429 43.478 0.00 0.00 0.00 2.27
944 1265 1.522900 GGAATTGGGGAGGAGATGGA 58.477 55.000 0.00 0.00 0.00 3.41
985 1306 4.996434 CATGGAGGCCGGGATCGC 62.996 72.222 2.18 0.00 34.56 4.58
986 1307 4.320456 CCATGGAGGCCGGGATCG 62.320 72.222 5.56 0.00 0.00 3.69
1330 1887 0.661552 CTCAATCTGGCAGGCAATCG 59.338 55.000 15.73 0.00 0.00 3.34
1332 1889 2.226962 AACTCAATCTGGCAGGCAAT 57.773 45.000 15.73 0.00 0.00 3.56
1368 1925 4.313675 GCAATTCGGGATCGCGGC 62.314 66.667 28.92 20.84 36.13 6.53
1379 1936 4.491120 GCGTCTCTCGTTAGAAAGCAATTC 60.491 45.833 10.90 0.00 42.13 2.17
1386 1943 1.402456 GGCAGCGTCTCTCGTTAGAAA 60.402 52.381 0.00 0.00 42.13 2.52
1392 1949 2.745100 TACGGCAGCGTCTCTCGT 60.745 61.111 0.00 0.00 42.13 4.18
1396 1953 1.602851 TCTAATCTACGGCAGCGTCTC 59.397 52.381 0.00 0.00 0.00 3.36
1400 1957 2.493713 AACTCTAATCTACGGCAGCG 57.506 50.000 0.00 0.00 0.00 5.18
1406 1963 5.852229 GGATCAGCGTAAACTCTAATCTACG 59.148 44.000 0.00 0.00 40.00 3.51
1408 1965 5.530171 ACGGATCAGCGTAAACTCTAATCTA 59.470 40.000 0.00 0.00 0.00 1.98
1410 1967 4.608951 ACGGATCAGCGTAAACTCTAATC 58.391 43.478 0.00 0.00 0.00 1.75
1421 1978 3.131577 TGGAAAATACTACGGATCAGCGT 59.868 43.478 2.60 2.60 0.00 5.07
1443 2000 7.415206 GCAAGACGTAATCCAAAGAATAACCAT 60.415 37.037 0.00 0.00 0.00 3.55
1447 2004 6.093495 CCTGCAAGACGTAATCCAAAGAATAA 59.907 38.462 0.00 0.00 34.07 1.40
1449 2006 4.396166 CCTGCAAGACGTAATCCAAAGAAT 59.604 41.667 0.00 0.00 34.07 2.40
1455 2012 0.613260 AGCCTGCAAGACGTAATCCA 59.387 50.000 0.00 0.00 34.07 3.41
1471 2028 3.352648 TCCAATTACAGCAAGGTTAGCC 58.647 45.455 0.00 0.00 0.00 3.93
1476 2033 5.499004 TCTAACTCCAATTACAGCAAGGT 57.501 39.130 0.00 0.00 0.00 3.50
1517 2074 4.142160 TGCACACATGTATGAGTCTACCTC 60.142 45.833 8.67 0.00 40.89 3.85
1518 2075 3.769300 TGCACACATGTATGAGTCTACCT 59.231 43.478 8.67 0.00 29.05 3.08
1519 2076 3.865745 GTGCACACATGTATGAGTCTACC 59.134 47.826 13.17 0.00 29.05 3.18
1520 2077 4.748892 AGTGCACACATGTATGAGTCTAC 58.251 43.478 21.04 0.00 29.05 2.59
1521 2078 6.321181 TGATAGTGCACACATGTATGAGTCTA 59.679 38.462 21.04 7.01 29.05 2.59
1522 2079 3.969287 AGTGCACACATGTATGAGTCT 57.031 42.857 21.04 0.00 29.05 3.24
1532 2089 3.354948 ACCACATGATAGTGCACACAT 57.645 42.857 21.04 17.39 38.18 3.21
1533 2090 2.857186 ACCACATGATAGTGCACACA 57.143 45.000 21.04 15.88 38.18 3.72
1543 2100 9.466497 ACTGATATTTTTACTGAACCACATGAT 57.534 29.630 0.00 0.00 0.00 2.45
1550 2107 9.309516 TCATACGACTGATATTTTTACTGAACC 57.690 33.333 0.00 0.00 0.00 3.62
1592 2150 4.877823 CAGCCTTATACAATCTGCAACTGA 59.122 41.667 0.00 0.00 0.00 3.41
1593 2151 4.497006 GCAGCCTTATACAATCTGCAACTG 60.497 45.833 7.55 0.00 46.64 3.16
1619 2177 4.726416 AGCAAAATAGCACATTGACTTCG 58.274 39.130 0.00 0.00 36.85 3.79
1625 2183 8.615211 TGAATAGAGTAGCAAAATAGCACATTG 58.385 33.333 0.00 0.00 36.85 2.82
1677 2239 8.765488 TTGATGATTCCAGGAAAATATAAGCA 57.235 30.769 5.81 0.00 0.00 3.91
1688 2250 9.258629 AGTTTTCATTATTTGATGATTCCAGGA 57.741 29.630 0.00 0.00 36.05 3.86
1690 2252 8.814235 GCAGTTTTCATTATTTGATGATTCCAG 58.186 33.333 0.00 0.00 36.05 3.86
1720 2282 3.454375 ACGGTTAACTATGAATCGGCAG 58.546 45.455 5.42 0.00 34.69 4.85
1726 2288 9.662947 AACTTTAAGCTACGGTTAACTATGAAT 57.337 29.630 5.42 0.00 35.64 2.57
1785 2422 8.630054 AAATCACTTAGTGCACTAAACCAATA 57.370 30.769 32.86 18.67 37.92 1.90
1807 2444 6.395426 TCTTCTTGATGCTGTTTGTGAAAT 57.605 33.333 0.00 0.00 0.00 2.17
1877 2514 5.761234 ACCTTTCATACTAAACTGTCGCAAA 59.239 36.000 0.00 0.00 0.00 3.68
1889 2526 8.918202 AACAATTCAACTGACCTTTCATACTA 57.082 30.769 0.00 0.00 0.00 1.82
1906 2543 6.464222 ACTCATACGGAAAGAGAACAATTCA 58.536 36.000 7.41 0.00 33.69 2.57
2087 2725 7.105588 TGATGTTGCAGAAAGTGTACATCTAT 58.894 34.615 19.28 0.00 43.52 1.98
2117 2756 7.288810 ACACCAAACAGAACACATTATGATT 57.711 32.000 0.00 0.00 31.23 2.57
2204 2843 9.750125 AACAGGAATTTTGAGCTAAAAACTAAG 57.250 29.630 11.32 4.04 41.29 2.18
2299 3117 5.191727 AGGGTCACATATCAAACAATGGA 57.808 39.130 0.00 0.00 0.00 3.41
2467 3285 6.643770 CACAAAATTGATATAGGGCTGCATTC 59.356 38.462 0.50 0.00 0.00 2.67
2470 3288 5.199723 TCACAAAATTGATATAGGGCTGCA 58.800 37.500 0.50 0.00 0.00 4.41
2682 3500 8.105829 ACTTCCATCACAAAAGATCTTAGTGAT 58.894 33.333 31.21 31.21 43.20 3.06
2683 3501 7.453393 ACTTCCATCACAAAAGATCTTAGTGA 58.547 34.615 30.19 30.19 39.94 3.41
2684 3502 7.388776 TGACTTCCATCACAAAAGATCTTAGTG 59.611 37.037 24.47 24.47 33.06 2.74
2685 3503 7.453393 TGACTTCCATCACAAAAGATCTTAGT 58.547 34.615 8.75 7.99 0.00 2.24
2686 3504 7.912056 TGACTTCCATCACAAAAGATCTTAG 57.088 36.000 8.75 7.32 0.00 2.18
2687 3505 8.102676 TCATGACTTCCATCACAAAAGATCTTA 58.897 33.333 8.75 0.00 31.94 2.10
2688 3506 6.944290 TCATGACTTCCATCACAAAAGATCTT 59.056 34.615 0.88 0.88 31.94 2.40
2689 3507 6.479006 TCATGACTTCCATCACAAAAGATCT 58.521 36.000 0.00 0.00 31.94 2.75
2690 3508 6.748333 TCATGACTTCCATCACAAAAGATC 57.252 37.500 0.00 0.00 31.94 2.75
2691 3509 7.232127 AGTTTCATGACTTCCATCACAAAAGAT 59.768 33.333 0.00 0.00 31.94 2.40
2692 3510 6.547141 AGTTTCATGACTTCCATCACAAAAGA 59.453 34.615 0.00 0.00 31.94 2.52
2693 3511 6.639686 CAGTTTCATGACTTCCATCACAAAAG 59.360 38.462 0.00 0.00 31.94 2.27
2694 3512 6.506147 CAGTTTCATGACTTCCATCACAAAA 58.494 36.000 0.00 0.00 31.94 2.44
2695 3513 5.507817 GCAGTTTCATGACTTCCATCACAAA 60.508 40.000 0.00 0.00 31.94 2.83
2696 3514 4.022935 GCAGTTTCATGACTTCCATCACAA 60.023 41.667 0.00 0.00 31.94 3.33
2697 3515 3.503363 GCAGTTTCATGACTTCCATCACA 59.497 43.478 0.00 0.00 31.94 3.58
2698 3516 3.503363 TGCAGTTTCATGACTTCCATCAC 59.497 43.478 0.00 0.00 31.94 3.06
2699 3517 3.753815 TGCAGTTTCATGACTTCCATCA 58.246 40.909 0.00 0.00 31.94 3.07
2700 3518 4.771590 TTGCAGTTTCATGACTTCCATC 57.228 40.909 0.00 0.00 31.94 3.51
2701 3519 5.733620 ATTTGCAGTTTCATGACTTCCAT 57.266 34.783 0.00 0.00 35.44 3.41
2702 3520 6.209192 ACATATTTGCAGTTTCATGACTTCCA 59.791 34.615 0.00 0.00 0.00 3.53
2703 3521 6.624423 ACATATTTGCAGTTTCATGACTTCC 58.376 36.000 0.00 0.00 0.00 3.46
2704 3522 7.809331 TCAACATATTTGCAGTTTCATGACTTC 59.191 33.333 0.00 0.00 0.00 3.01
2705 3523 7.660112 TCAACATATTTGCAGTTTCATGACTT 58.340 30.769 0.00 0.00 0.00 3.01
2706 3524 7.218228 TCAACATATTTGCAGTTTCATGACT 57.782 32.000 0.00 0.00 0.00 3.41
2707 3525 7.543172 ACATCAACATATTTGCAGTTTCATGAC 59.457 33.333 0.00 0.00 0.00 3.06
2708 3526 7.604549 ACATCAACATATTTGCAGTTTCATGA 58.395 30.769 0.00 0.00 0.00 3.07
2709 3527 7.821595 ACATCAACATATTTGCAGTTTCATG 57.178 32.000 0.00 0.00 0.00 3.07
2710 3528 8.089597 TCAACATCAACATATTTGCAGTTTCAT 58.910 29.630 0.00 0.00 0.00 2.57
2711 3529 7.432059 TCAACATCAACATATTTGCAGTTTCA 58.568 30.769 0.00 0.00 0.00 2.69
2712 3530 7.872163 TCAACATCAACATATTTGCAGTTTC 57.128 32.000 0.00 0.00 0.00 2.78
2713 3531 8.089597 TGATCAACATCAACATATTTGCAGTTT 58.910 29.630 0.00 0.00 35.99 2.66
2714 3532 7.604549 TGATCAACATCAACATATTTGCAGTT 58.395 30.769 0.00 0.00 35.99 3.16
2715 3533 7.160547 TGATCAACATCAACATATTTGCAGT 57.839 32.000 0.00 0.00 35.99 4.40
2716 3534 8.539674 CAATGATCAACATCAACATATTTGCAG 58.460 33.333 0.00 0.00 42.53 4.41
2717 3535 8.035984 ACAATGATCAACATCAACATATTTGCA 58.964 29.630 0.00 0.00 42.53 4.08
2718 3536 8.415192 ACAATGATCAACATCAACATATTTGC 57.585 30.769 0.00 0.00 42.53 3.68
2723 3541 8.558700 CGGATTACAATGATCAACATCAACATA 58.441 33.333 0.00 0.00 42.53 2.29
2724 3542 7.420002 CGGATTACAATGATCAACATCAACAT 58.580 34.615 0.00 0.00 42.53 2.71
2725 3543 6.677675 GCGGATTACAATGATCAACATCAACA 60.678 38.462 0.00 0.00 42.53 3.33
2726 3544 5.682862 GCGGATTACAATGATCAACATCAAC 59.317 40.000 0.00 0.00 42.53 3.18
2727 3545 5.589855 AGCGGATTACAATGATCAACATCAA 59.410 36.000 0.00 0.00 42.53 2.57
2728 3546 5.125356 AGCGGATTACAATGATCAACATCA 58.875 37.500 0.00 0.00 43.45 3.07
2732 3550 5.986135 AGACTAGCGGATTACAATGATCAAC 59.014 40.000 0.00 0.00 0.00 3.18
2832 3650 3.691049 TTTTTCGTGCTCTGGTTCAAG 57.309 42.857 0.00 0.00 0.00 3.02
2859 3677 3.097910 CGTTACACATTAGGCGCATTTG 58.902 45.455 10.83 6.43 0.00 2.32
2902 3720 0.886938 TTTCGCTGATTTCACGGCCA 60.887 50.000 2.24 0.00 38.76 5.36
2906 3724 0.787787 TCGGTTTCGCTGATTTCACG 59.212 50.000 0.00 0.00 36.13 4.35
2908 3726 1.798223 CTGTCGGTTTCGCTGATTTCA 59.202 47.619 0.00 0.00 34.56 2.69
2961 3779 0.386352 TCTAACGGCGTCTGTCAACG 60.386 55.000 15.17 0.00 45.31 4.10
3019 3837 0.584396 CAGCGCGACCAACTTAAACA 59.416 50.000 12.10 0.00 0.00 2.83
3034 3852 0.242825 TTCGAACAGGTAGACCAGCG 59.757 55.000 0.66 0.00 38.89 5.18
3038 3856 3.429135 GGTCAGATTCGAACAGGTAGACC 60.429 52.174 0.00 8.92 36.60 3.85
3080 3898 2.826287 CGCAGGCGAGAGAGAGGA 60.826 66.667 8.15 0.00 42.83 3.71
3081 3899 2.826287 TCGCAGGCGAGAGAGAGG 60.826 66.667 12.94 0.00 44.01 3.69
3137 3955 0.251608 AAGTAAAATGGGCTGGCCGT 60.252 50.000 16.08 12.95 36.85 5.68
3138 3956 0.455815 GAAGTAAAATGGGCTGGCCG 59.544 55.000 16.08 0.00 36.85 6.13
3140 3958 3.621558 AGTAGAAGTAAAATGGGCTGGC 58.378 45.455 0.00 0.00 0.00 4.85
3156 3974 7.899709 AGGAAGGATACCAGTTTAAAGAGTAGA 59.100 37.037 0.00 0.00 37.17 2.59
3362 4180 1.808945 GTTCATCTGCCACCTGACAAG 59.191 52.381 0.00 0.00 0.00 3.16
3463 4281 2.821969 CAACTAACTGATGCAAAGGGCT 59.178 45.455 0.00 0.00 45.15 5.19
3689 4507 5.392767 AGGTACATCTATGTCAATAGCCG 57.607 43.478 0.00 0.00 41.97 5.52
3760 4579 1.125093 TCCTTCCTTTCACTCCGGCA 61.125 55.000 0.00 0.00 0.00 5.69
3916 4794 2.954318 AGCATGCATATTGAGACCCAAC 59.046 45.455 21.98 0.00 37.63 3.77
3920 4798 4.070716 AGCTAAGCATGCATATTGAGACC 58.929 43.478 21.98 0.00 0.00 3.85
4022 4905 7.093684 GGTTGGGAACAGCTGGTTATTATTAAA 60.094 37.037 19.93 0.00 44.54 1.52
4033 4916 0.468029 ACAAGGTTGGGAACAGCTGG 60.468 55.000 19.93 0.00 44.54 4.85
4091 4975 3.601443 ATGCTGGTCTGTGAAGAGTAC 57.399 47.619 0.00 0.00 0.00 2.73
4227 5127 7.065683 CAGGAGCAACCAAATTTTAGTTTGTTT 59.934 33.333 1.44 0.00 42.04 2.83
4248 5149 2.040278 AGAGGTCAGGGCCAGGAG 59.960 66.667 6.18 0.00 0.00 3.69
4302 5203 9.594936 ACTATCTAATTAATACTGCAGAGTCCT 57.405 33.333 23.35 0.00 33.21 3.85
4404 5305 4.783242 CCAATTTATGGTCGAAATAGCCG 58.217 43.478 0.00 0.00 44.85 5.52
4435 5337 2.609747 TGTGGAGAGTAGGAACTTGCT 58.390 47.619 0.00 0.00 41.75 3.91
4463 5365 2.303600 ACGATGGCAACCTGGTTTACTA 59.696 45.455 9.90 3.57 0.00 1.82
4719 5625 3.953775 CAAGGCCACTCCACCCGT 61.954 66.667 5.01 0.00 37.29 5.28
4850 5756 3.190849 CATGAGGCCGTGTCTGCG 61.191 66.667 0.00 0.00 0.00 5.18
4970 5876 7.439356 TGCAGATATTCTTCGATAAACTGGAAG 59.561 37.037 0.00 0.00 40.12 3.46
4991 5897 5.163426 TGGCAAGAGAAAAAGAAAATGCAGA 60.163 36.000 0.00 0.00 34.37 4.26
4995 5901 6.927381 AGTCATGGCAAGAGAAAAAGAAAATG 59.073 34.615 0.00 0.00 0.00 2.32
4996 5902 6.927381 CAGTCATGGCAAGAGAAAAAGAAAAT 59.073 34.615 0.00 0.00 0.00 1.82
5061 5967 9.898152 ATATCCTATTTTCATTTAGCTCCTAGC 57.102 33.333 0.00 0.00 42.84 3.42
5121 6033 7.198306 TCACTGCATTATGCTATCATCAAAG 57.802 36.000 18.44 6.32 45.31 2.77
5163 6075 5.940470 CACCTTCTGGTTACAATTAGAAGCT 59.060 40.000 7.59 0.00 46.05 3.74
5213 6126 8.210265 TGTGTATCAATATTAGTTGGCATCAGA 58.790 33.333 0.00 0.00 0.00 3.27
5249 6162 0.111832 TGTCTACCCACCGTGAGACT 59.888 55.000 15.91 0.00 39.27 3.24
5432 6345 1.067199 GCTGCGGTTTCAGAAATGCG 61.067 55.000 14.75 11.59 36.19 4.73
5530 6443 1.001974 TCCATTTGATATCGGCTCCGG 59.998 52.381 8.59 0.00 40.25 5.14
5562 6475 2.058798 CGATACATATTCGGCGTGCTT 58.941 47.619 6.85 0.00 0.00 3.91
5577 6490 5.928839 AGATTGTTGTATCTGATGCCGATAC 59.071 40.000 0.00 0.00 42.13 2.24
5770 6687 3.000727 CCTTTACAGGCTCTTTACACGG 58.999 50.000 0.00 0.00 31.53 4.94
5802 6719 5.117584 AGTGCAGAGCTAAATCAGATCAAG 58.882 41.667 0.00 0.00 42.42 3.02
5804 6721 4.750021 AGTGCAGAGCTAAATCAGATCA 57.250 40.909 0.00 0.00 42.42 2.92
5906 6831 3.759618 AGAGAAACGACACCTCTAAGGAG 59.240 47.826 0.00 0.00 37.67 3.69
5978 6903 3.247648 ACCGACGACATTTTCACAGAAAG 59.752 43.478 0.00 0.00 0.00 2.62
5998 6923 2.604969 TAAAACGAAGCATGCGAACC 57.395 45.000 13.01 1.86 42.52 3.62
6031 6958 3.236896 ACGAAGGGAGTAGGAAAGAACA 58.763 45.455 0.00 0.00 0.00 3.18
6050 6977 3.129988 AGAAGTACACTTATTCGGGGACG 59.870 47.826 0.00 0.00 46.24 4.79
6051 6978 4.732672 AGAAGTACACTTATTCGGGGAC 57.267 45.455 0.00 0.00 36.11 4.46
6052 6979 4.646492 GGTAGAAGTACACTTATTCGGGGA 59.354 45.833 0.00 0.00 36.11 4.81
6053 6980 4.648307 AGGTAGAAGTACACTTATTCGGGG 59.352 45.833 0.00 0.00 36.11 5.73
6054 6981 5.848833 AGGTAGAAGTACACTTATTCGGG 57.151 43.478 0.00 0.00 36.11 5.14
6055 6982 9.813446 ATAAAAGGTAGAAGTACACTTATTCGG 57.187 33.333 0.00 0.00 36.11 4.30
6061 6988 9.654663 CTTAGCATAAAAGGTAGAAGTACACTT 57.345 33.333 0.00 0.00 39.23 3.16
6062 6989 8.813951 ACTTAGCATAAAAGGTAGAAGTACACT 58.186 33.333 0.00 0.00 0.00 3.55
6063 6990 8.999220 ACTTAGCATAAAAGGTAGAAGTACAC 57.001 34.615 0.00 0.00 0.00 2.90
6064 6991 8.809066 TGACTTAGCATAAAAGGTAGAAGTACA 58.191 33.333 0.00 0.00 0.00 2.90
6065 6992 9.649167 TTGACTTAGCATAAAAGGTAGAAGTAC 57.351 33.333 0.00 0.00 0.00 2.73
6067 6994 9.220767 CTTTGACTTAGCATAAAAGGTAGAAGT 57.779 33.333 0.00 0.00 0.00 3.01
6068 6995 9.220767 ACTTTGACTTAGCATAAAAGGTAGAAG 57.779 33.333 0.00 0.00 33.20 2.85
6069 6996 9.569122 AACTTTGACTTAGCATAAAAGGTAGAA 57.431 29.630 0.00 0.00 33.20 2.10
6070 6997 9.569122 AAACTTTGACTTAGCATAAAAGGTAGA 57.431 29.630 0.00 0.00 33.20 2.59
6180 7107 9.120538 GGCACTAAATTAGGATCACTAAATTCA 57.879 33.333 4.92 0.00 44.39 2.57
6181 7108 9.120538 TGGCACTAAATTAGGATCACTAAATTC 57.879 33.333 4.92 0.00 44.39 2.17
6182 7109 9.646522 ATGGCACTAAATTAGGATCACTAAATT 57.353 29.630 4.92 7.99 44.39 1.82
6219 7146 9.197306 ACTTTGACCAACTTTATAGGAAAAAGT 57.803 29.630 0.00 0.00 46.45 2.66
6261 7188 9.938280 ACAAGTGTACATCTAGCTTTTGTATTA 57.062 29.630 0.00 0.00 0.00 0.98
6262 7189 8.848474 ACAAGTGTACATCTAGCTTTTGTATT 57.152 30.769 0.00 0.00 0.00 1.89
6263 7190 8.848474 AACAAGTGTACATCTAGCTTTTGTAT 57.152 30.769 0.00 0.00 0.00 2.29
6264 7191 8.671384 AAACAAGTGTACATCTAGCTTTTGTA 57.329 30.769 0.00 0.00 0.00 2.41
6265 7192 7.568199 AAACAAGTGTACATCTAGCTTTTGT 57.432 32.000 0.00 0.00 0.00 2.83
6266 7193 9.546909 CATAAACAAGTGTACATCTAGCTTTTG 57.453 33.333 0.00 0.00 0.00 2.44
6267 7194 8.730680 CCATAAACAAGTGTACATCTAGCTTTT 58.269 33.333 0.00 0.00 0.00 2.27
6268 7195 8.100791 TCCATAAACAAGTGTACATCTAGCTTT 58.899 33.333 0.00 0.00 0.00 3.51
6269 7196 7.549488 GTCCATAAACAAGTGTACATCTAGCTT 59.451 37.037 0.00 0.00 0.00 3.74
6270 7197 7.042335 GTCCATAAACAAGTGTACATCTAGCT 58.958 38.462 0.00 0.00 0.00 3.32
6271 7198 6.019801 CGTCCATAAACAAGTGTACATCTAGC 60.020 42.308 0.00 0.00 0.00 3.42
6272 7199 6.475727 CCGTCCATAAACAAGTGTACATCTAG 59.524 42.308 0.00 0.00 0.00 2.43
6273 7200 6.153170 TCCGTCCATAAACAAGTGTACATCTA 59.847 38.462 0.00 0.00 0.00 1.98
6274 7201 5.046878 TCCGTCCATAAACAAGTGTACATCT 60.047 40.000 0.00 0.00 0.00 2.90
6275 7202 5.172934 TCCGTCCATAAACAAGTGTACATC 58.827 41.667 0.00 0.00 0.00 3.06
6276 7203 5.155278 TCCGTCCATAAACAAGTGTACAT 57.845 39.130 0.00 0.00 0.00 2.29
6277 7204 4.561938 CCTCCGTCCATAAACAAGTGTACA 60.562 45.833 0.00 0.00 0.00 2.90
6278 7205 3.930848 CCTCCGTCCATAAACAAGTGTAC 59.069 47.826 0.00 0.00 0.00 2.90
6279 7206 3.055675 CCCTCCGTCCATAAACAAGTGTA 60.056 47.826 0.00 0.00 0.00 2.90
6280 7207 2.290071 CCCTCCGTCCATAAACAAGTGT 60.290 50.000 0.00 0.00 0.00 3.55
6281 7208 2.027561 TCCCTCCGTCCATAAACAAGTG 60.028 50.000 0.00 0.00 0.00 3.16
6282 7209 2.236395 CTCCCTCCGTCCATAAACAAGT 59.764 50.000 0.00 0.00 0.00 3.16
6283 7210 2.236395 ACTCCCTCCGTCCATAAACAAG 59.764 50.000 0.00 0.00 0.00 3.16
6284 7211 2.262637 ACTCCCTCCGTCCATAAACAA 58.737 47.619 0.00 0.00 0.00 2.83
6285 7212 1.946984 ACTCCCTCCGTCCATAAACA 58.053 50.000 0.00 0.00 0.00 2.83
6286 7213 4.220163 CCTATACTCCCTCCGTCCATAAAC 59.780 50.000 0.00 0.00 0.00 2.01
6287 7214 4.413760 CCTATACTCCCTCCGTCCATAAA 58.586 47.826 0.00 0.00 0.00 1.40
6288 7215 3.245514 CCCTATACTCCCTCCGTCCATAA 60.246 52.174 0.00 0.00 0.00 1.90
6289 7216 2.310945 CCCTATACTCCCTCCGTCCATA 59.689 54.545 0.00 0.00 0.00 2.74
6290 7217 1.077334 CCCTATACTCCCTCCGTCCAT 59.923 57.143 0.00 0.00 0.00 3.41
6291 7218 0.481567 CCCTATACTCCCTCCGTCCA 59.518 60.000 0.00 0.00 0.00 4.02
6292 7219 0.251698 CCCCTATACTCCCTCCGTCC 60.252 65.000 0.00 0.00 0.00 4.79
6293 7220 0.776176 TCCCCTATACTCCCTCCGTC 59.224 60.000 0.00 0.00 0.00 4.79
6294 7221 0.778720 CTCCCCTATACTCCCTCCGT 59.221 60.000 0.00 0.00 0.00 4.69
6295 7222 0.039911 CCTCCCCTATACTCCCTCCG 59.960 65.000 0.00 0.00 0.00 4.63
6296 7223 1.359818 CTCCTCCCCTATACTCCCTCC 59.640 61.905 0.00 0.00 0.00 4.30
6297 7224 1.272816 GCTCCTCCCCTATACTCCCTC 60.273 61.905 0.00 0.00 0.00 4.30
6298 7225 0.787733 GCTCCTCCCCTATACTCCCT 59.212 60.000 0.00 0.00 0.00 4.20
6299 7226 0.787733 AGCTCCTCCCCTATACTCCC 59.212 60.000 0.00 0.00 0.00 4.30
6300 7227 1.272816 GGAGCTCCTCCCCTATACTCC 60.273 61.905 26.25 0.00 44.36 3.85
6301 7228 2.225382 GGAGCTCCTCCCCTATACTC 57.775 60.000 26.25 0.00 44.36 2.59
6381 7309 5.749596 TCAAACACAGACATTTCACGATT 57.250 34.783 0.00 0.00 0.00 3.34
6409 7340 6.816640 ACGATCGAATCAATAGAAGTTTCCAA 59.183 34.615 24.34 0.00 0.00 3.53
6463 7396 3.449018 ACATCTCTCCTAAGTGTCGCATT 59.551 43.478 0.00 0.00 0.00 3.56
6475 7408 1.276421 CCAAACCGACACATCTCTCCT 59.724 52.381 0.00 0.00 0.00 3.69
6493 7426 1.342496 CGCATCTCTATTCCTCTGCCA 59.658 52.381 0.00 0.00 0.00 4.92
6555 7488 3.118738 ACGTGTGATTAGTGGGGAATCTC 60.119 47.826 0.00 0.00 34.88 2.75
6556 7489 2.838202 ACGTGTGATTAGTGGGGAATCT 59.162 45.455 0.00 0.00 34.88 2.40
6557 7490 2.936498 CACGTGTGATTAGTGGGGAATC 59.064 50.000 7.58 0.00 34.48 2.52
6558 7491 2.939640 GCACGTGTGATTAGTGGGGAAT 60.940 50.000 18.38 0.00 36.48 3.01
6559 7492 1.609580 GCACGTGTGATTAGTGGGGAA 60.610 52.381 18.38 0.00 36.48 3.97
6560 7493 0.036765 GCACGTGTGATTAGTGGGGA 60.037 55.000 18.38 0.00 36.48 4.81
6561 7494 0.036388 AGCACGTGTGATTAGTGGGG 60.036 55.000 18.38 0.00 36.48 4.96
6569 7502 6.148645 TGTTGTGATTAATTAGCACGTGTGAT 59.851 34.615 18.38 6.36 35.37 3.06
6575 7508 6.408858 AGAGTGTTGTGATTAATTAGCACG 57.591 37.500 12.85 0.00 35.37 5.34
6606 7539 8.441311 AGATGATTCTATATGACCAAGCCTAA 57.559 34.615 0.00 0.00 0.00 2.69
6607 7540 7.675619 TGAGATGATTCTATATGACCAAGCCTA 59.324 37.037 0.00 0.00 30.30 3.93
6609 7542 6.705302 TGAGATGATTCTATATGACCAAGCC 58.295 40.000 0.00 0.00 30.30 4.35
6620 7553 9.228949 GCCTGAACATTTATGAGATGATTCTAT 57.771 33.333 0.00 0.00 30.30 1.98
6647 7580 6.974965 AAGAATTCTTTGAGATGGTGACAAC 58.025 36.000 15.11 0.00 36.96 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.