Multiple sequence alignment - TraesCS4D01G267100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G267100 chr4D 100.000 5409 0 0 1 5409 437809798 437815206 0.000000e+00 9989.0
1 TraesCS4D01G267100 chr4D 86.194 268 27 10 3745 4006 437813479 437813742 1.150000e-71 281.0
2 TraesCS4D01G267100 chr4D 86.194 268 27 10 3682 3945 437813542 437813803 1.150000e-71 281.0
3 TraesCS4D01G267100 chr4D 88.679 159 16 2 3837 3994 437813513 437813670 5.530000e-45 193.0
4 TraesCS4D01G267100 chr4D 88.679 159 16 2 3716 3873 437813634 437813791 5.530000e-45 193.0
5 TraesCS4D01G267100 chr4D 89.412 85 9 0 5309 5393 95772901 95772985 2.060000e-19 108.0
6 TraesCS4D01G267100 chr4D 89.610 77 7 1 202 277 94769639 94769715 4.460000e-16 97.1
7 TraesCS4D01G267100 chr4D 89.610 77 7 1 202 277 94771820 94771896 4.460000e-16 97.1
8 TraesCS4D01G267100 chr4B 94.646 2092 82 19 641 2712 540718235 540720316 0.000000e+00 3216.0
9 TraesCS4D01G267100 chr4B 93.227 1314 66 14 3745 5038 540721304 540722614 0.000000e+00 1912.0
10 TraesCS4D01G267100 chr4B 93.843 1137 47 9 2819 3945 540720444 540721567 0.000000e+00 1690.0
11 TraesCS4D01G267100 chr4B 84.152 448 42 17 259 680 540717802 540718246 1.810000e-109 407.0
12 TraesCS4D01G267100 chr4B 88.889 324 23 8 5077 5391 540722612 540722931 2.360000e-103 387.0
13 TraesCS4D01G267100 chr4B 90.116 172 12 5 3837 4006 540721338 540721506 9.120000e-53 219.0
14 TraesCS4D01G267100 chr4A 92.417 2176 124 22 678 2822 30294004 30291839 0.000000e+00 3066.0
15 TraesCS4D01G267100 chr4A 93.715 1082 52 11 3745 4812 30291256 30290177 0.000000e+00 1607.0
16 TraesCS4D01G267100 chr4A 93.015 816 47 9 3136 3945 30291804 30290993 0.000000e+00 1182.0
17 TraesCS4D01G267100 chr4A 88.780 205 22 1 2 205 188613060 188613264 3.230000e-62 250.0
18 TraesCS4D01G267100 chr4A 88.953 172 14 5 3837 4006 30291222 30291054 1.970000e-49 207.0
19 TraesCS4D01G267100 chr4A 88.024 167 17 3 3707 3871 30291172 30291007 1.540000e-45 195.0
20 TraesCS4D01G267100 chr4A 90.698 86 6 2 5309 5393 616208913 616208997 4.430000e-21 113.0
21 TraesCS4D01G267100 chr1D 87.981 208 24 1 1 207 377022988 377022781 1.500000e-60 244.0
22 TraesCS4D01G267100 chr1D 86.385 213 28 1 1 212 178458971 178458759 1.170000e-56 231.0
23 TraesCS4D01G267100 chr1D 95.455 66 3 0 5328 5393 282963715 282963780 7.410000e-19 106.0
24 TraesCS4D01G267100 chr1D 93.939 66 4 0 5328 5393 285559880 285559815 3.450000e-17 100.0
25 TraesCS4D01G267100 chr1D 92.857 70 3 2 202 270 291209846 291209914 3.450000e-17 100.0
26 TraesCS4D01G267100 chr1D 93.939 66 4 0 5328 5393 298684945 298684880 3.450000e-17 100.0
27 TraesCS4D01G267100 chr1D 88.235 85 9 1 5309 5393 416281897 416281814 3.450000e-17 100.0
28 TraesCS4D01G267100 chr1D 86.047 86 12 0 5308 5393 405013080 405012995 5.770000e-15 93.5
29 TraesCS4D01G267100 chr3D 87.805 205 25 0 1 205 429781 429577 1.950000e-59 241.0
30 TraesCS4D01G267100 chr3D 87.745 204 24 1 2 204 313719044 313719247 2.520000e-58 237.0
31 TraesCS4D01G267100 chr3A 87.864 206 23 2 1 204 41103062 41103267 1.950000e-59 241.0
32 TraesCS4D01G267100 chr7B 87.500 208 25 1 1 207 629600762 629600555 7.000000e-59 239.0
33 TraesCS4D01G267100 chr2B 87.204 211 25 2 1 210 547003478 547003687 7.000000e-59 239.0
34 TraesCS4D01G267100 chr2B 91.892 74 4 2 202 275 365571213 365571284 9.580000e-18 102.0
35 TraesCS4D01G267100 chr7A 86.111 216 26 4 1 215 619160315 619160527 4.210000e-56 230.0
36 TraesCS4D01G267100 chr7A 89.535 86 9 0 5308 5393 265915450 265915365 5.730000e-20 110.0
37 TraesCS4D01G267100 chr2D 92.500 80 6 0 5311 5390 15998679 15998758 1.230000e-21 115.0
38 TraesCS4D01G267100 chr2D 88.235 85 10 0 5309 5393 80653194 80653278 9.580000e-18 102.0
39 TraesCS4D01G267100 chr2D 86.047 86 12 0 5308 5393 110048555 110048470 5.770000e-15 93.5
40 TraesCS4D01G267100 chr6D 90.476 84 8 0 5311 5394 457645456 457645373 1.590000e-20 111.0
41 TraesCS4D01G267100 chr6D 88.235 85 10 0 5309 5393 405486912 405486828 9.580000e-18 102.0
42 TraesCS4D01G267100 chr6D 92.754 69 5 0 202 270 388117310 388117378 3.450000e-17 100.0
43 TraesCS4D01G267100 chr5B 93.151 73 2 3 202 273 42693205 42693135 2.660000e-18 104.0
44 TraesCS4D01G267100 chr7D 88.235 85 10 0 5309 5393 173715634 173715550 9.580000e-18 102.0
45 TraesCS4D01G267100 chr2A 91.892 74 2 4 202 271 133057549 133057476 3.450000e-17 100.0
46 TraesCS4D01G267100 chr3B 91.667 72 5 1 202 273 738699482 738699412 1.240000e-16 99.0
47 TraesCS4D01G267100 chr1B 87.209 86 11 0 5308 5393 536651180 536651095 1.240000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G267100 chr4D 437809798 437815206 5408 False 2187.400000 9989 89.949200 1 5409 5 chr4D.!!$F3 5408
1 TraesCS4D01G267100 chr4B 540717802 540722931 5129 False 1305.166667 3216 90.812167 259 5391 6 chr4B.!!$F1 5132
2 TraesCS4D01G267100 chr4A 30290177 30294004 3827 True 1251.400000 3066 91.224800 678 4812 5 chr4A.!!$R1 4134

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
431 445 0.042188 CAAACCGAACGACACTGCAG 60.042 55.0 13.48 13.48 0.00 4.41 F
828 887 0.109365 CCACACTCGCTGACAGAGAG 60.109 60.0 28.31 28.31 45.86 3.20 F
2029 2107 0.249676 AGTCACTGATGCTGGCTCTG 59.750 55.0 0.00 0.00 0.00 3.35 F
2810 2919 0.105658 TTACCATCCCTCTCCCCGAG 60.106 60.0 0.00 0.00 39.57 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2033 2111 0.179054 GCAGAGCCAGCATCAGATGA 60.179 55.000 15.12 0.00 31.30 2.92 R
2034 2112 2.322212 GCAGAGCCAGCATCAGATG 58.678 57.895 5.98 5.98 0.00 2.90 R
2899 3029 0.033504 TCGTCTTGTCAACTGGAGGC 59.966 55.000 0.00 0.00 0.00 4.70 R
4416 4566 0.674581 CGATGGGCTGAAGCAAGACA 60.675 55.000 4.43 0.00 44.36 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.974060 TTTTGACCAACTTTATAGACAAGAGT 57.026 30.769 0.00 0.00 0.00 3.24
30 31 9.706691 TTTGACCAACTTTATAGACAAGAGTAG 57.293 33.333 0.00 0.00 0.00 2.57
31 32 8.418597 TGACCAACTTTATAGACAAGAGTAGT 57.581 34.615 0.00 0.00 0.00 2.73
32 33 8.304596 TGACCAACTTTATAGACAAGAGTAGTG 58.695 37.037 0.00 0.00 0.00 2.74
33 34 7.612677 ACCAACTTTATAGACAAGAGTAGTGG 58.387 38.462 0.00 0.00 0.00 4.00
34 35 6.535508 CCAACTTTATAGACAAGAGTAGTGGC 59.464 42.308 0.00 0.00 0.00 5.01
35 36 6.852420 ACTTTATAGACAAGAGTAGTGGCA 57.148 37.500 0.00 0.00 0.00 4.92
36 37 7.425224 ACTTTATAGACAAGAGTAGTGGCAT 57.575 36.000 0.00 0.00 0.00 4.40
37 38 8.534954 ACTTTATAGACAAGAGTAGTGGCATA 57.465 34.615 0.00 0.00 0.00 3.14
38 39 9.148879 ACTTTATAGACAAGAGTAGTGGCATAT 57.851 33.333 0.00 0.00 0.00 1.78
42 43 8.885693 ATAGACAAGAGTAGTGGCATATATGA 57.114 34.615 17.10 0.00 0.00 2.15
43 44 6.987386 AGACAAGAGTAGTGGCATATATGAC 58.013 40.000 17.10 14.60 35.98 3.06
44 45 6.551227 AGACAAGAGTAGTGGCATATATGACA 59.449 38.462 17.65 17.65 45.19 3.58
54 55 5.693961 TGGCATATATGACAACTCATTGGT 58.306 37.500 19.23 0.00 44.23 3.67
55 56 6.836242 TGGCATATATGACAACTCATTGGTA 58.164 36.000 19.23 0.00 44.23 3.25
56 57 6.710295 TGGCATATATGACAACTCATTGGTAC 59.290 38.462 19.23 0.00 44.23 3.34
57 58 6.149474 GGCATATATGACAACTCATTGGTACC 59.851 42.308 17.10 4.43 40.42 3.34
58 59 6.936900 GCATATATGACAACTCATTGGTACCT 59.063 38.462 17.10 0.00 40.42 3.08
59 60 7.445402 GCATATATGACAACTCATTGGTACCTT 59.555 37.037 17.10 0.00 40.42 3.50
60 61 9.996554 CATATATGACAACTCATTGGTACCTTA 57.003 33.333 14.36 1.20 40.42 2.69
62 63 8.908786 ATATGACAACTCATTGGTACCTTATG 57.091 34.615 14.36 15.90 40.42 1.90
63 64 6.367374 TGACAACTCATTGGTACCTTATGA 57.633 37.500 21.46 21.46 40.42 2.15
64 65 6.774673 TGACAACTCATTGGTACCTTATGAA 58.225 36.000 22.40 7.66 40.42 2.57
65 66 7.227873 TGACAACTCATTGGTACCTTATGAAA 58.772 34.615 22.40 7.04 40.42 2.69
66 67 7.174253 TGACAACTCATTGGTACCTTATGAAAC 59.826 37.037 22.40 15.09 40.42 2.78
67 68 7.231467 ACAACTCATTGGTACCTTATGAAACT 58.769 34.615 22.40 12.27 40.42 2.66
68 69 8.380099 ACAACTCATTGGTACCTTATGAAACTA 58.620 33.333 22.40 8.02 40.42 2.24
69 70 8.665685 CAACTCATTGGTACCTTATGAAACTAC 58.334 37.037 22.40 0.00 31.63 2.73
70 71 7.913789 ACTCATTGGTACCTTATGAAACTACA 58.086 34.615 22.40 7.01 0.00 2.74
71 72 8.548877 ACTCATTGGTACCTTATGAAACTACAT 58.451 33.333 22.40 0.00 0.00 2.29
72 73 9.396022 CTCATTGGTACCTTATGAAACTACATT 57.604 33.333 22.40 0.00 0.00 2.71
73 74 9.391006 TCATTGGTACCTTATGAAACTACATTC 57.609 33.333 20.93 0.00 0.00 2.67
74 75 8.621286 CATTGGTACCTTATGAAACTACATTCC 58.379 37.037 14.36 0.00 0.00 3.01
75 76 7.260387 TGGTACCTTATGAAACTACATTCCA 57.740 36.000 14.36 0.00 0.00 3.53
76 77 7.691213 TGGTACCTTATGAAACTACATTCCAA 58.309 34.615 14.36 0.00 0.00 3.53
77 78 8.164733 TGGTACCTTATGAAACTACATTCCAAA 58.835 33.333 14.36 0.00 0.00 3.28
78 79 9.016438 GGTACCTTATGAAACTACATTCCAAAA 57.984 33.333 4.06 0.00 0.00 2.44
79 80 9.836076 GTACCTTATGAAACTACATTCCAAAAC 57.164 33.333 0.00 0.00 0.00 2.43
80 81 7.590279 ACCTTATGAAACTACATTCCAAAACG 58.410 34.615 0.00 0.00 0.00 3.60
81 82 7.446013 ACCTTATGAAACTACATTCCAAAACGA 59.554 33.333 0.00 0.00 0.00 3.85
82 83 8.293867 CCTTATGAAACTACATTCCAAAACGAA 58.706 33.333 0.00 0.00 0.00 3.85
83 84 9.840427 CTTATGAAACTACATTCCAAAACGAAT 57.160 29.630 0.00 0.00 32.58 3.34
84 85 9.834628 TTATGAAACTACATTCCAAAACGAATC 57.165 29.630 0.00 0.00 29.85 2.52
85 86 7.504924 TGAAACTACATTCCAAAACGAATCT 57.495 32.000 0.00 0.00 29.85 2.40
86 87 8.610248 TGAAACTACATTCCAAAACGAATCTA 57.390 30.769 0.00 0.00 29.85 1.98
87 88 9.058174 TGAAACTACATTCCAAAACGAATCTAA 57.942 29.630 0.00 0.00 29.85 2.10
89 90 9.840427 AAACTACATTCCAAAACGAATCTAATG 57.160 29.630 0.00 0.00 29.85 1.90
90 91 8.786826 ACTACATTCCAAAACGAATCTAATGA 57.213 30.769 0.00 0.00 29.85 2.57
91 92 9.396022 ACTACATTCCAAAACGAATCTAATGAT 57.604 29.630 0.00 0.00 29.85 2.45
94 95 9.396022 ACATTCCAAAACGAATCTAATGATACT 57.604 29.630 0.00 0.00 29.85 2.12
123 124 9.953697 TTTAGCGACATAAATGTTGTTACTTTT 57.046 25.926 11.14 0.00 42.81 2.27
124 125 9.953697 TTAGCGACATAAATGTTGTTACTTTTT 57.046 25.926 11.14 0.00 42.81 1.94
170 171 9.642327 TTTTAAAACTTTGACTTAGGACAAACC 57.358 29.630 0.00 0.00 34.56 3.27
187 188 8.421673 GGACAAACCTAGATGTACACTTATTC 57.578 38.462 0.00 0.00 35.41 1.75
188 189 7.222224 GGACAAACCTAGATGTACACTTATTCG 59.778 40.741 0.00 0.00 35.41 3.34
189 190 6.534079 ACAAACCTAGATGTACACTTATTCGC 59.466 38.462 0.00 0.00 0.00 4.70
190 191 5.197682 ACCTAGATGTACACTTATTCGCC 57.802 43.478 0.00 0.00 0.00 5.54
191 192 4.227538 CCTAGATGTACACTTATTCGCCG 58.772 47.826 0.00 0.00 0.00 6.46
192 193 4.023450 CCTAGATGTACACTTATTCGCCGA 60.023 45.833 0.00 0.00 0.00 5.54
193 194 4.585955 AGATGTACACTTATTCGCCGAT 57.414 40.909 0.00 0.00 0.00 4.18
194 195 4.299155 AGATGTACACTTATTCGCCGATG 58.701 43.478 0.00 0.00 0.00 3.84
195 196 2.816689 TGTACACTTATTCGCCGATGG 58.183 47.619 0.00 0.00 0.00 3.51
196 197 2.166870 TGTACACTTATTCGCCGATGGT 59.833 45.455 0.00 0.00 0.00 3.55
197 198 1.651987 ACACTTATTCGCCGATGGTG 58.348 50.000 0.00 0.00 33.99 4.17
198 199 0.937304 CACTTATTCGCCGATGGTGG 59.063 55.000 0.00 0.00 33.43 4.61
199 200 0.179056 ACTTATTCGCCGATGGTGGG 60.179 55.000 0.00 0.00 33.43 4.61
200 201 0.105964 CTTATTCGCCGATGGTGGGA 59.894 55.000 0.00 0.00 33.43 4.37
201 202 0.105964 TTATTCGCCGATGGTGGGAG 59.894 55.000 0.00 0.00 33.43 4.30
202 203 1.046472 TATTCGCCGATGGTGGGAGT 61.046 55.000 0.00 0.00 33.43 3.85
203 204 1.046472 ATTCGCCGATGGTGGGAGTA 61.046 55.000 0.00 0.00 33.43 2.59
204 205 1.046472 TTCGCCGATGGTGGGAGTAT 61.046 55.000 0.00 0.00 33.43 2.12
205 206 1.300931 CGCCGATGGTGGGAGTATG 60.301 63.158 0.00 0.00 0.00 2.39
206 207 1.830145 GCCGATGGTGGGAGTATGT 59.170 57.895 0.00 0.00 0.00 2.29
207 208 0.532862 GCCGATGGTGGGAGTATGTG 60.533 60.000 0.00 0.00 0.00 3.21
208 209 0.106708 CCGATGGTGGGAGTATGTGG 59.893 60.000 0.00 0.00 0.00 4.17
209 210 0.830648 CGATGGTGGGAGTATGTGGT 59.169 55.000 0.00 0.00 0.00 4.16
210 211 2.036387 CGATGGTGGGAGTATGTGGTA 58.964 52.381 0.00 0.00 0.00 3.25
211 212 2.035961 CGATGGTGGGAGTATGTGGTAG 59.964 54.545 0.00 0.00 0.00 3.18
212 213 2.634639 TGGTGGGAGTATGTGGTAGT 57.365 50.000 0.00 0.00 0.00 2.73
213 214 2.463752 TGGTGGGAGTATGTGGTAGTC 58.536 52.381 0.00 0.00 32.85 2.59
222 223 6.222038 GAGTATGTGGTAGTCCATTTGAGA 57.778 41.667 0.00 0.00 46.20 3.27
223 224 6.814954 AGTATGTGGTAGTCCATTTGAGAT 57.185 37.500 0.00 0.00 46.20 2.75
224 225 7.914427 AGTATGTGGTAGTCCATTTGAGATA 57.086 36.000 0.00 0.00 46.20 1.98
225 226 8.497910 AGTATGTGGTAGTCCATTTGAGATAT 57.502 34.615 0.00 0.00 46.20 1.63
226 227 8.589338 AGTATGTGGTAGTCCATTTGAGATATC 58.411 37.037 0.00 0.00 46.20 1.63
227 228 7.623999 ATGTGGTAGTCCATTTGAGATATCT 57.376 36.000 4.47 4.47 46.20 1.98
228 229 8.727100 ATGTGGTAGTCCATTTGAGATATCTA 57.273 34.615 4.89 0.00 46.20 1.98
229 230 8.547481 TGTGGTAGTCCATTTGAGATATCTAA 57.453 34.615 4.89 0.00 46.20 2.10
230 231 8.988060 TGTGGTAGTCCATTTGAGATATCTAAA 58.012 33.333 4.89 1.00 46.20 1.85
231 232 9.832445 GTGGTAGTCCATTTGAGATATCTAAAA 57.168 33.333 16.21 16.21 46.20 1.52
254 255 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
255 256 6.555463 AGACAAATATTTAGGAACGGAGGA 57.445 37.500 0.00 0.00 0.00 3.71
256 257 6.954232 AGACAAATATTTAGGAACGGAGGAA 58.046 36.000 0.00 0.00 0.00 3.36
257 258 7.048512 AGACAAATATTTAGGAACGGAGGAAG 58.951 38.462 0.00 0.00 0.00 3.46
263 264 8.773033 ATATTTAGGAACGGAGGAAGTAACTA 57.227 34.615 0.00 0.00 0.00 2.24
265 266 6.705863 TTAGGAACGGAGGAAGTAACTATC 57.294 41.667 0.00 0.00 0.00 2.08
283 284 4.813161 ACTATCATGCATGAACTTTCTCCG 59.187 41.667 31.79 14.32 40.69 4.63
285 286 3.411446 TCATGCATGAACTTTCTCCGTT 58.589 40.909 26.87 0.00 33.08 4.44
304 305 0.751277 TGTGTTGTGGGCCTCAACTG 60.751 55.000 36.94 0.00 43.54 3.16
311 312 1.541588 GTGGGCCTCAACTGTCATTTC 59.458 52.381 4.53 0.00 0.00 2.17
323 324 3.445096 ACTGTCATTTCCTATGCTTTGCC 59.555 43.478 0.00 0.00 0.00 4.52
325 326 4.088634 TGTCATTTCCTATGCTTTGCCTT 58.911 39.130 0.00 0.00 0.00 4.35
326 327 4.082081 TGTCATTTCCTATGCTTTGCCTTG 60.082 41.667 0.00 0.00 0.00 3.61
334 335 2.335712 GCTTTGCCTTGGGACTCCG 61.336 63.158 0.00 0.00 35.24 4.63
351 352 0.519077 CCGCCAGAAAAAGAGCTCAC 59.481 55.000 17.77 1.80 0.00 3.51
358 359 4.070716 CAGAAAAAGAGCTCACAGTGGAT 58.929 43.478 17.77 0.00 0.00 3.41
359 360 4.070716 AGAAAAAGAGCTCACAGTGGATG 58.929 43.478 17.77 0.00 0.00 3.51
363 364 2.775890 AGAGCTCACAGTGGATGTTTG 58.224 47.619 17.77 0.00 41.41 2.93
364 365 2.369860 AGAGCTCACAGTGGATGTTTGA 59.630 45.455 17.77 0.00 41.41 2.69
371 372 3.573538 CACAGTGGATGTTTGATTTCCCA 59.426 43.478 0.00 0.00 41.41 4.37
373 374 5.418524 CACAGTGGATGTTTGATTTCCCATA 59.581 40.000 0.00 0.00 41.41 2.74
383 384 9.927668 ATGTTTGATTTCCCATAAAAGTACAAG 57.072 29.630 0.00 0.00 0.00 3.16
386 387 7.156876 TGATTTCCCATAAAAGTACAAGCTG 57.843 36.000 0.00 0.00 0.00 4.24
408 422 6.007936 TGCAGAAATAAAAGCGCTTCTTTA 57.992 33.333 25.24 19.15 43.84 1.85
416 430 4.972286 AAAGCGCTTCTTTAATGCAAAC 57.028 36.364 25.24 0.00 42.87 2.93
428 442 0.586319 ATGCAAACCGAACGACACTG 59.414 50.000 0.00 0.00 0.00 3.66
431 445 0.042188 CAAACCGAACGACACTGCAG 60.042 55.000 13.48 13.48 0.00 4.41
449 464 8.301002 ACACTGCAGTTAACTTTTCTTTGTTTA 58.699 29.630 18.94 0.00 0.00 2.01
450 465 9.301153 CACTGCAGTTAACTTTTCTTTGTTTAT 57.699 29.630 18.94 0.00 0.00 1.40
460 476 7.334858 ACTTTTCTTTGTTTATTTCCCTGCAA 58.665 30.769 0.00 0.00 0.00 4.08
472 488 3.188880 TCCCTGCAAATTTCCTCCATT 57.811 42.857 0.00 0.00 0.00 3.16
473 489 3.099141 TCCCTGCAAATTTCCTCCATTC 58.901 45.455 0.00 0.00 0.00 2.67
474 490 2.169144 CCCTGCAAATTTCCTCCATTCC 59.831 50.000 0.00 0.00 0.00 3.01
493 512 2.125202 CTCCAAACCGAACGCAACCC 62.125 60.000 0.00 0.00 0.00 4.11
508 527 1.827399 AACCCTAGTGTGGTGCCTCG 61.827 60.000 0.00 0.00 35.88 4.63
509 528 2.579201 CCTAGTGTGGTGCCTCGG 59.421 66.667 0.00 0.00 0.00 4.63
529 548 3.707793 GGCCTTCTCTCGTGTATGTTAG 58.292 50.000 0.00 0.00 0.00 2.34
534 553 6.624423 GCCTTCTCTCGTGTATGTTAGTGTTA 60.624 42.308 0.00 0.00 0.00 2.41
542 561 9.355215 CTCGTGTATGTTAGTGTTATTTCTCTT 57.645 33.333 0.00 0.00 0.00 2.85
617 636 1.135689 CAACCGGCTGATTTGTAGCAC 60.136 52.381 0.00 0.00 42.88 4.40
676 731 2.243602 TTTTAGAAACCGCCGTCTGT 57.756 45.000 0.00 0.00 0.00 3.41
682 737 0.665369 AAACCGCCGTCTGTAACTCG 60.665 55.000 0.00 0.00 0.00 4.18
685 740 1.080974 CGCCGTCTGTAACTCGGTT 60.081 57.895 0.00 0.00 45.11 4.44
718 773 1.517832 CTCGTCAGGGCCCAGTAAG 59.482 63.158 27.56 11.13 0.00 2.34
719 774 2.125106 CGTCAGGGCCCAGTAAGC 60.125 66.667 27.56 6.64 0.00 3.09
720 775 2.660064 CGTCAGGGCCCAGTAAGCT 61.660 63.158 27.56 0.00 0.00 3.74
721 776 1.685820 GTCAGGGCCCAGTAAGCTT 59.314 57.895 27.56 3.48 0.00 3.74
725 780 1.559682 CAGGGCCCAGTAAGCTTCTTA 59.440 52.381 27.56 0.00 0.00 2.10
807 866 3.926616 AGAGTGACGAATTTACCCACTG 58.073 45.455 0.00 0.00 38.10 3.66
827 886 1.527433 CCCACACTCGCTGACAGAGA 61.527 60.000 6.65 7.79 38.97 3.10
828 887 0.109365 CCACACTCGCTGACAGAGAG 60.109 60.000 28.31 28.31 45.86 3.20
949 1008 3.222855 CGCCGGAGCTCCAGATCT 61.223 66.667 31.67 0.00 36.60 2.75
961 1020 4.880537 AGATCTGCGGCCGCTTCG 62.881 66.667 45.79 33.30 42.51 3.79
1020 1079 4.796231 ACGGAGTCGATGGTGCGC 62.796 66.667 0.00 0.00 29.74 6.09
1221 1280 1.447314 CAAGGTCCGCCGGTAAGTC 60.447 63.158 1.63 0.00 40.50 3.01
1279 1342 1.236616 TGTGCCAGTCGCCATTTCAG 61.237 55.000 0.00 0.00 36.24 3.02
1335 1398 3.741476 CGCTTGCCTTGCCTCCAC 61.741 66.667 0.00 0.00 0.00 4.02
1383 1446 2.429971 TGAATTGCTGCAGTTGGTTTCA 59.570 40.909 15.36 14.00 0.00 2.69
1391 1454 4.543692 CTGCAGTTGGTTTCATCTGAAAG 58.456 43.478 5.25 0.00 43.82 2.62
1440 1509 5.592688 TCTGGACAACGATACACTGATATGA 59.407 40.000 0.00 0.00 0.00 2.15
1476 1545 4.720649 CTAGTAGCAACTAGCAAGGACA 57.279 45.455 0.00 0.00 46.53 4.02
1587 1656 1.073763 TCCCTTTGCAGCTGCTCTAAA 59.926 47.619 36.61 26.67 42.66 1.85
1681 1750 4.980592 TGGAGCCAGGCCCAGTCA 62.981 66.667 15.73 2.24 0.00 3.41
1839 1908 1.335496 GTTGTGCCTAACGGAAAAGCA 59.665 47.619 0.00 0.00 0.00 3.91
1941 2010 5.719563 TGACATCATATATCCGCCCTTTAGA 59.280 40.000 0.00 0.00 0.00 2.10
1971 2040 1.195115 TAGCCTTCCTTGCGATCTGT 58.805 50.000 0.00 0.00 0.00 3.41
2022 2100 1.827344 TCCGATGAAGTCACTGATGCT 59.173 47.619 0.00 0.00 0.00 3.79
2023 2101 1.931841 CCGATGAAGTCACTGATGCTG 59.068 52.381 0.00 0.00 0.00 4.41
2024 2102 1.931841 CGATGAAGTCACTGATGCTGG 59.068 52.381 0.00 0.00 0.00 4.85
2025 2103 1.669779 GATGAAGTCACTGATGCTGGC 59.330 52.381 0.00 0.00 0.00 4.85
2026 2104 0.689055 TGAAGTCACTGATGCTGGCT 59.311 50.000 0.00 0.00 0.00 4.75
2027 2105 1.338484 TGAAGTCACTGATGCTGGCTC 60.338 52.381 0.00 0.00 0.00 4.70
2028 2106 0.982704 AAGTCACTGATGCTGGCTCT 59.017 50.000 0.00 0.00 0.00 4.09
2029 2107 0.249676 AGTCACTGATGCTGGCTCTG 59.750 55.000 0.00 0.00 0.00 3.35
2030 2108 1.078637 TCACTGATGCTGGCTCTGC 60.079 57.895 0.00 0.00 0.00 4.26
2042 2120 1.595466 GGCTCTGCCTTCATCTGATG 58.405 55.000 11.42 11.42 46.69 3.07
2043 2121 0.945813 GCTCTGCCTTCATCTGATGC 59.054 55.000 12.78 1.87 0.00 3.91
2216 2321 4.782252 TTTTGTAGGTTTGTCTCGTTCG 57.218 40.909 0.00 0.00 0.00 3.95
2417 2525 5.675538 AGACATGCCTAAAGGTCTCATTAC 58.324 41.667 0.00 0.00 35.85 1.89
2478 2586 5.911752 AGATAGGCAAGAATCACAGTACAG 58.088 41.667 0.00 0.00 0.00 2.74
2479 2587 2.704572 AGGCAAGAATCACAGTACAGC 58.295 47.619 0.00 0.00 0.00 4.40
2712 2821 4.817517 CAGCTTGCAATTCCTTCATCTTT 58.182 39.130 0.00 0.00 0.00 2.52
2715 2824 3.598019 TGCAATTCCTTCATCTTTGCC 57.402 42.857 3.77 0.00 41.43 4.52
2759 2868 5.893824 ACAAAAACCTCAAATTGTCCTCTCT 59.106 36.000 0.00 0.00 30.58 3.10
2774 2883 4.099266 GTCCTCTCTCTACTGCACATCAAT 59.901 45.833 0.00 0.00 0.00 2.57
2795 2904 2.565834 TGCTACTCAGTGAACCCTTACC 59.434 50.000 0.00 0.00 0.00 2.85
2810 2919 0.105658 TTACCATCCCTCTCCCCGAG 60.106 60.000 0.00 0.00 39.57 4.63
2859 2989 1.078709 CATCCACTACTGTGCGTTGG 58.921 55.000 0.00 0.00 42.54 3.77
2872 3002 4.349871 GTTGGCGCACGACGTGTC 62.350 66.667 27.32 19.00 46.11 3.67
2950 3080 2.092914 AGGGGAAAAGAATAGAGGCACG 60.093 50.000 0.00 0.00 0.00 5.34
2989 3119 3.181495 GCGATACTGCTATAGGCTTCGAT 60.181 47.826 1.04 0.00 42.39 3.59
2992 3122 1.001406 ACTGCTATAGGCTTCGATGGC 59.999 52.381 16.02 16.02 42.39 4.40
2994 3124 1.625315 TGCTATAGGCTTCGATGGCAT 59.375 47.619 23.87 17.10 42.39 4.40
3058 3188 4.525100 GGGCTGGGTTGAAGTGTTAAATAA 59.475 41.667 0.00 0.00 0.00 1.40
3159 3295 0.463204 AGCTGCATGATAGTGAGCGT 59.537 50.000 1.02 0.00 34.75 5.07
3182 3320 5.288712 GTGTCAGTGTATATCTGTCCAAACG 59.711 44.000 7.45 0.00 34.86 3.60
3283 3430 2.357952 GAGAGTTTGAGGGTGCGTTTTT 59.642 45.455 0.00 0.00 0.00 1.94
3284 3431 2.099098 AGAGTTTGAGGGTGCGTTTTTG 59.901 45.455 0.00 0.00 0.00 2.44
3285 3432 2.096248 AGTTTGAGGGTGCGTTTTTGA 58.904 42.857 0.00 0.00 0.00 2.69
3286 3433 2.159296 AGTTTGAGGGTGCGTTTTTGAC 60.159 45.455 0.00 0.00 0.00 3.18
3287 3434 1.464734 TTGAGGGTGCGTTTTTGACA 58.535 45.000 0.00 0.00 0.00 3.58
3288 3435 1.021202 TGAGGGTGCGTTTTTGACAG 58.979 50.000 0.00 0.00 0.00 3.51
3289 3436 1.021968 GAGGGTGCGTTTTTGACAGT 58.978 50.000 0.00 0.00 0.00 3.55
3290 3437 1.404035 GAGGGTGCGTTTTTGACAGTT 59.596 47.619 0.00 0.00 0.00 3.16
3291 3438 1.822371 AGGGTGCGTTTTTGACAGTTT 59.178 42.857 0.00 0.00 0.00 2.66
3292 3439 2.232696 AGGGTGCGTTTTTGACAGTTTT 59.767 40.909 0.00 0.00 0.00 2.43
3299 3446 3.061965 CGTTTTTGACAGTTTTGGGCTTG 59.938 43.478 0.00 0.00 0.00 4.01
3321 3468 4.413189 TGGAGATTGATTAATGGGCTCAGA 59.587 41.667 0.00 0.00 0.00 3.27
3350 3497 4.620567 GCAAAAATTCATGGTCCAGGGTAC 60.621 45.833 3.19 0.00 0.00 3.34
3474 3622 6.895607 TTGCAGCAATTTATGACAATCATG 57.104 33.333 2.83 0.00 37.70 3.07
3613 3761 7.740346 CGTTAAACATGTGAAATCTATATCCGC 59.260 37.037 0.00 0.00 0.00 5.54
3614 3762 8.556194 GTTAAACATGTGAAATCTATATCCGCA 58.444 33.333 0.00 0.00 0.00 5.69
3776 3924 9.920133 TTTATTTGTTTATGTTATTGCTCTGCA 57.080 25.926 0.00 0.00 36.47 4.41
3791 3939 7.880160 TTGCTCTGCAATTATTGGTAGTTAT 57.120 32.000 7.08 0.00 43.99 1.89
3792 3940 7.880160 TGCTCTGCAATTATTGGTAGTTATT 57.120 32.000 7.08 0.00 34.76 1.40
3793 3941 8.972458 TGCTCTGCAATTATTGGTAGTTATTA 57.028 30.769 7.08 0.00 34.76 0.98
3794 3942 9.056005 TGCTCTGCAATTATTGGTAGTTATTAG 57.944 33.333 7.08 0.00 34.76 1.73
3795 3943 9.057089 GCTCTGCAATTATTGGTAGTTATTAGT 57.943 33.333 7.08 0.00 0.00 2.24
3808 3956 8.910944 TGGTAGTTATTAGTTACTGTCAGATCC 58.089 37.037 6.91 0.00 0.00 3.36
3809 3957 9.134055 GGTAGTTATTAGTTACTGTCAGATCCT 57.866 37.037 6.91 1.32 0.00 3.24
3882 4031 6.684686 ACTGTCAGATCCATTCATTTGTTTG 58.315 36.000 6.91 0.00 0.00 2.93
4049 4199 4.151689 TCTTGAATGCTTGTTAGTACGTGC 59.848 41.667 0.00 0.00 0.00 5.34
4051 4201 4.062293 TGAATGCTTGTTAGTACGTGCTT 58.938 39.130 12.53 0.00 0.00 3.91
4055 4205 4.839796 TGCTTGTTAGTACGTGCTTTTTC 58.160 39.130 12.53 1.16 0.00 2.29
4063 4213 0.898326 ACGTGCTTTTTCCCCATCCC 60.898 55.000 0.00 0.00 0.00 3.85
4067 4217 1.186200 GCTTTTTCCCCATCCCTGTC 58.814 55.000 0.00 0.00 0.00 3.51
4217 4367 6.629128 TCGACAATGTATGCCATTTTCATTT 58.371 32.000 0.00 0.00 41.93 2.32
4224 4374 3.681593 TGCCATTTTCATTTGTCCCTG 57.318 42.857 0.00 0.00 0.00 4.45
4234 4384 3.843619 TCATTTGTCCCTGTCATCTACCA 59.156 43.478 0.00 0.00 0.00 3.25
4288 4438 8.787852 AGATTTGTCAAAGAATGGAAGAAGTAC 58.212 33.333 4.03 0.00 0.00 2.73
4416 4566 2.290705 CGGAGGTTTGGTAAGGTCCAAT 60.291 50.000 0.00 0.00 45.30 3.16
4436 4586 1.746615 TCTTGCTTCAGCCCATCGC 60.747 57.895 0.00 0.00 41.18 4.58
4437 4587 2.751436 TTGCTTCAGCCCATCGCC 60.751 61.111 0.00 0.00 41.18 5.54
4484 4634 3.636153 ATAAGGCTTTCAGACCTGGAC 57.364 47.619 4.45 0.00 36.07 4.02
4604 4754 4.638421 CCGGCTTTGGTCTTTATATGAACA 59.362 41.667 0.00 0.00 0.00 3.18
4609 4759 8.131731 GGCTTTGGTCTTTATATGAACAATCTC 58.868 37.037 7.32 2.18 40.29 2.75
4737 4897 6.125589 TGCCATATCAGCCTGATTATAACA 57.874 37.500 13.32 3.06 38.26 2.41
4832 4992 0.729140 GCGATTGTTTCCCAACTGCG 60.729 55.000 0.00 0.00 35.44 5.18
4850 5010 1.418342 CGCACGGTAAATCTGACCCG 61.418 60.000 0.00 0.00 45.72 5.28
4889 5049 3.611113 CGTTTGCGGGTATATAATCCTCG 59.389 47.826 0.00 0.00 0.00 4.63
4902 5062 0.970937 ATCCTCGTCGCTTCCCTTCA 60.971 55.000 0.00 0.00 0.00 3.02
4912 5072 3.969250 TTCCCTTCATCGGCGCCAC 62.969 63.158 28.98 0.00 0.00 5.01
4926 5086 3.314331 CCACCACACTCGCCCTCT 61.314 66.667 0.00 0.00 0.00 3.69
4927 5087 1.982395 CCACCACACTCGCCCTCTA 60.982 63.158 0.00 0.00 0.00 2.43
4928 5088 1.330655 CCACCACACTCGCCCTCTAT 61.331 60.000 0.00 0.00 0.00 1.98
4929 5089 0.537188 CACCACACTCGCCCTCTATT 59.463 55.000 0.00 0.00 0.00 1.73
4930 5090 0.824759 ACCACACTCGCCCTCTATTC 59.175 55.000 0.00 0.00 0.00 1.75
4931 5091 0.824109 CCACACTCGCCCTCTATTCA 59.176 55.000 0.00 0.00 0.00 2.57
4932 5092 1.471676 CCACACTCGCCCTCTATTCAC 60.472 57.143 0.00 0.00 0.00 3.18
4933 5093 0.824759 ACACTCGCCCTCTATTCACC 59.175 55.000 0.00 0.00 0.00 4.02
4934 5094 0.824109 CACTCGCCCTCTATTCACCA 59.176 55.000 0.00 0.00 0.00 4.17
4990 5156 3.309436 TTCATCGGGTGCCACCTCG 62.309 63.158 14.71 15.35 38.64 4.63
5010 5177 1.134068 GCACCCTCTCTTCCCCATTAC 60.134 57.143 0.00 0.00 0.00 1.89
5017 5184 3.455910 CTCTCTTCCCCATTACCATGTCA 59.544 47.826 0.00 0.00 0.00 3.58
5019 5186 2.092429 TCTTCCCCATTACCATGTCAGC 60.092 50.000 0.00 0.00 0.00 4.26
5020 5187 1.294041 TCCCCATTACCATGTCAGCA 58.706 50.000 0.00 0.00 0.00 4.41
5047 5214 4.109675 CCCCTCCGCGGACCATTT 62.110 66.667 27.28 0.00 33.16 2.32
5048 5215 2.824041 CCCTCCGCGGACCATTTG 60.824 66.667 27.28 13.77 33.16 2.32
5049 5216 3.508840 CCTCCGCGGACCATTTGC 61.509 66.667 27.28 0.00 33.16 3.68
5050 5217 3.508840 CTCCGCGGACCATTTGCC 61.509 66.667 27.28 0.00 0.00 4.52
5051 5218 4.337177 TCCGCGGACCATTTGCCA 62.337 61.111 27.28 0.00 0.00 4.92
5052 5219 3.814268 CCGCGGACCATTTGCCAG 61.814 66.667 24.07 0.00 0.00 4.85
5053 5220 4.481112 CGCGGACCATTTGCCAGC 62.481 66.667 0.00 0.00 0.00 4.85
5054 5221 4.481112 GCGGACCATTTGCCAGCG 62.481 66.667 0.00 0.00 0.00 5.18
5055 5222 3.814268 CGGACCATTTGCCAGCGG 61.814 66.667 0.00 0.00 0.00 5.52
5103 5270 4.394712 CCCTGCCGGTGAGGTCAC 62.395 72.222 17.56 1.17 45.72 3.67
5193 5360 7.894376 ATCGTAAACGTAATCCTTCTTCAAA 57.106 32.000 2.02 0.00 40.80 2.69
5199 5366 6.927294 ACGTAATCCTTCTTCAAATCCATC 57.073 37.500 0.00 0.00 0.00 3.51
5201 5368 6.316390 ACGTAATCCTTCTTCAAATCCATCAC 59.684 38.462 0.00 0.00 0.00 3.06
5239 5406 9.929722 TTGAAATCCTAATTAAAATCGATGTCG 57.070 29.630 0.00 0.00 41.45 4.35
5254 5421 6.234723 TCGATGTCGAGAATTCTGATAGAG 57.765 41.667 14.00 7.48 44.22 2.43
5259 5426 4.742659 GTCGAGAATTCTGATAGAGTTGCC 59.257 45.833 14.00 0.00 0.00 4.52
5271 5438 3.252974 AGAGTTGCCCTTACAATCTCG 57.747 47.619 0.00 0.00 35.10 4.04
5301 5468 4.963628 GGGATCAAGGGTTTCTACTAGACT 59.036 45.833 0.00 0.00 0.00 3.24
5308 5475 3.566111 GGGTTTCTACTAGACTGGACCCT 60.566 52.174 16.05 0.00 41.73 4.34
5310 5477 5.267587 GGTTTCTACTAGACTGGACCCTAA 58.732 45.833 0.00 0.00 0.00 2.69
5311 5478 5.360429 GGTTTCTACTAGACTGGACCCTAAG 59.640 48.000 0.00 0.00 0.00 2.18
5312 5479 6.186234 GTTTCTACTAGACTGGACCCTAAGA 58.814 44.000 0.00 0.00 0.00 2.10
5313 5480 6.593759 TTCTACTAGACTGGACCCTAAGAT 57.406 41.667 0.00 0.00 0.00 2.40
5319 5486 4.430441 AGACTGGACCCTAAGATCAACTT 58.570 43.478 0.00 0.00 42.04 2.66
5327 5494 4.263506 ACCCTAAGATCAACTTCAACCCAG 60.264 45.833 0.00 0.00 39.72 4.45
5334 5501 1.990160 AACTTCAACCCAGCGACCCA 61.990 55.000 0.00 0.00 0.00 4.51
5335 5502 1.002134 CTTCAACCCAGCGACCCAT 60.002 57.895 0.00 0.00 0.00 4.00
5336 5503 0.609131 CTTCAACCCAGCGACCCATT 60.609 55.000 0.00 0.00 0.00 3.16
5337 5504 0.178975 TTCAACCCAGCGACCCATTT 60.179 50.000 0.00 0.00 0.00 2.32
5338 5505 0.178975 TCAACCCAGCGACCCATTTT 60.179 50.000 0.00 0.00 0.00 1.82
5339 5506 0.038343 CAACCCAGCGACCCATTTTG 60.038 55.000 0.00 0.00 0.00 2.44
5341 5508 0.893727 ACCCAGCGACCCATTTTGTC 60.894 55.000 0.00 0.00 0.00 3.18
5349 5525 3.904586 CCCATTTTGTCCGTTTGGG 57.095 52.632 0.00 0.00 41.02 4.12
5355 5531 2.649531 TTTGTCCGTTTGGGTCATCT 57.350 45.000 0.00 0.00 33.74 2.90
5370 5546 4.756084 GTCATCTGGACAGAAAAGTTGG 57.244 45.455 6.06 0.00 46.19 3.77
5397 5573 3.406559 GCGACCCAAACGGCTATC 58.593 61.111 0.00 0.00 33.26 2.08
5398 5574 2.178235 GCGACCCAAACGGCTATCC 61.178 63.158 0.00 0.00 33.26 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.574516 ACTCTTGTCTATAAAGTTGGTCAAAAT 57.425 29.630 0.00 0.00 0.00 1.82
3 4 8.974060 ACTCTTGTCTATAAAGTTGGTCAAAA 57.026 30.769 0.00 0.00 0.00 2.44
4 5 9.706691 CTACTCTTGTCTATAAAGTTGGTCAAA 57.293 33.333 0.00 0.00 0.00 2.69
5 6 8.867097 ACTACTCTTGTCTATAAAGTTGGTCAA 58.133 33.333 0.00 0.00 0.00 3.18
6 7 8.304596 CACTACTCTTGTCTATAAAGTTGGTCA 58.695 37.037 0.00 0.00 0.00 4.02
7 8 7.760340 CCACTACTCTTGTCTATAAAGTTGGTC 59.240 40.741 0.00 0.00 0.00 4.02
8 9 7.612677 CCACTACTCTTGTCTATAAAGTTGGT 58.387 38.462 0.00 0.00 0.00 3.67
9 10 6.535508 GCCACTACTCTTGTCTATAAAGTTGG 59.464 42.308 0.00 0.00 0.00 3.77
10 11 7.097192 TGCCACTACTCTTGTCTATAAAGTTG 58.903 38.462 0.00 0.00 0.00 3.16
11 12 7.241042 TGCCACTACTCTTGTCTATAAAGTT 57.759 36.000 0.00 0.00 0.00 2.66
12 13 6.852420 TGCCACTACTCTTGTCTATAAAGT 57.148 37.500 0.00 0.00 0.00 2.66
16 17 9.975218 TCATATATGCCACTACTCTTGTCTATA 57.025 33.333 7.92 0.00 0.00 1.31
17 18 8.744652 GTCATATATGCCACTACTCTTGTCTAT 58.255 37.037 7.92 0.00 0.00 1.98
18 19 7.724061 TGTCATATATGCCACTACTCTTGTCTA 59.276 37.037 7.92 0.00 0.00 2.59
19 20 6.551227 TGTCATATATGCCACTACTCTTGTCT 59.449 38.462 7.92 0.00 0.00 3.41
20 21 6.749139 TGTCATATATGCCACTACTCTTGTC 58.251 40.000 7.92 0.00 0.00 3.18
21 22 6.731292 TGTCATATATGCCACTACTCTTGT 57.269 37.500 7.92 0.00 0.00 3.16
22 23 7.212976 AGTTGTCATATATGCCACTACTCTTG 58.787 38.462 7.92 0.00 0.00 3.02
23 24 7.069950 TGAGTTGTCATATATGCCACTACTCTT 59.930 37.037 28.44 11.47 37.78 2.85
24 25 6.551227 TGAGTTGTCATATATGCCACTACTCT 59.449 38.462 28.44 16.75 37.78 3.24
25 26 6.749139 TGAGTTGTCATATATGCCACTACTC 58.251 40.000 25.41 25.41 37.61 2.59
26 27 6.731292 TGAGTTGTCATATATGCCACTACT 57.269 37.500 16.20 16.20 0.00 2.57
27 28 7.095060 CCAATGAGTTGTCATATATGCCACTAC 60.095 40.741 7.92 8.94 43.04 2.73
28 29 6.936335 CCAATGAGTTGTCATATATGCCACTA 59.064 38.462 7.92 0.00 43.04 2.74
29 30 5.766670 CCAATGAGTTGTCATATATGCCACT 59.233 40.000 7.92 9.94 43.04 4.00
30 31 5.532406 ACCAATGAGTTGTCATATATGCCAC 59.468 40.000 7.92 2.93 43.04 5.01
31 32 5.693961 ACCAATGAGTTGTCATATATGCCA 58.306 37.500 7.92 0.00 43.04 4.92
32 33 6.149474 GGTACCAATGAGTTGTCATATATGCC 59.851 42.308 7.15 0.00 43.04 4.40
33 34 6.936900 AGGTACCAATGAGTTGTCATATATGC 59.063 38.462 15.94 4.27 43.04 3.14
34 35 8.908786 AAGGTACCAATGAGTTGTCATATATG 57.091 34.615 15.94 6.36 43.04 1.78
36 37 9.996554 CATAAGGTACCAATGAGTTGTCATATA 57.003 33.333 15.94 0.00 43.04 0.86
37 38 8.713971 TCATAAGGTACCAATGAGTTGTCATAT 58.286 33.333 20.39 0.00 43.04 1.78
38 39 8.084985 TCATAAGGTACCAATGAGTTGTCATA 57.915 34.615 20.39 2.11 43.04 2.15
39 40 6.957631 TCATAAGGTACCAATGAGTTGTCAT 58.042 36.000 20.39 0.00 46.01 3.06
40 41 6.367374 TCATAAGGTACCAATGAGTTGTCA 57.633 37.500 20.39 3.25 37.02 3.58
41 42 7.390718 AGTTTCATAAGGTACCAATGAGTTGTC 59.609 37.037 22.11 14.68 33.36 3.18
42 43 7.231467 AGTTTCATAAGGTACCAATGAGTTGT 58.769 34.615 22.11 11.23 33.36 3.32
43 44 7.687941 AGTTTCATAAGGTACCAATGAGTTG 57.312 36.000 22.11 8.60 31.64 3.16
44 45 8.380099 TGTAGTTTCATAAGGTACCAATGAGTT 58.620 33.333 22.11 16.26 31.64 3.01
45 46 7.913789 TGTAGTTTCATAAGGTACCAATGAGT 58.086 34.615 22.11 16.01 31.64 3.41
46 47 8.964476 ATGTAGTTTCATAAGGTACCAATGAG 57.036 34.615 22.11 7.34 31.64 2.90
47 48 9.391006 GAATGTAGTTTCATAAGGTACCAATGA 57.609 33.333 20.39 20.39 0.00 2.57
48 49 8.621286 GGAATGTAGTTTCATAAGGTACCAATG 58.379 37.037 15.94 16.69 0.00 2.82
49 50 8.333235 TGGAATGTAGTTTCATAAGGTACCAAT 58.667 33.333 15.94 4.15 0.00 3.16
50 51 7.691213 TGGAATGTAGTTTCATAAGGTACCAA 58.309 34.615 15.94 1.42 0.00 3.67
51 52 7.260387 TGGAATGTAGTTTCATAAGGTACCA 57.740 36.000 15.94 0.00 0.00 3.25
52 53 8.570068 TTTGGAATGTAGTTTCATAAGGTACC 57.430 34.615 2.73 2.73 0.00 3.34
53 54 9.836076 GTTTTGGAATGTAGTTTCATAAGGTAC 57.164 33.333 0.00 0.00 0.00 3.34
54 55 8.723311 CGTTTTGGAATGTAGTTTCATAAGGTA 58.277 33.333 0.00 0.00 0.00 3.08
55 56 7.446013 TCGTTTTGGAATGTAGTTTCATAAGGT 59.554 33.333 0.00 0.00 29.62 3.50
56 57 7.812648 TCGTTTTGGAATGTAGTTTCATAAGG 58.187 34.615 0.00 0.00 0.00 2.69
57 58 9.840427 ATTCGTTTTGGAATGTAGTTTCATAAG 57.160 29.630 0.00 0.00 35.40 1.73
58 59 9.834628 GATTCGTTTTGGAATGTAGTTTCATAA 57.165 29.630 0.00 0.00 36.79 1.90
59 60 9.226606 AGATTCGTTTTGGAATGTAGTTTCATA 57.773 29.630 0.00 0.00 36.79 2.15
60 61 8.110860 AGATTCGTTTTGGAATGTAGTTTCAT 57.889 30.769 0.00 0.00 36.79 2.57
61 62 7.504924 AGATTCGTTTTGGAATGTAGTTTCA 57.495 32.000 0.00 0.00 36.79 2.69
63 64 9.840427 CATTAGATTCGTTTTGGAATGTAGTTT 57.160 29.630 0.00 0.00 36.79 2.66
64 65 9.226606 TCATTAGATTCGTTTTGGAATGTAGTT 57.773 29.630 0.00 0.00 36.79 2.24
65 66 8.786826 TCATTAGATTCGTTTTGGAATGTAGT 57.213 30.769 0.00 0.00 36.79 2.73
68 69 9.396022 AGTATCATTAGATTCGTTTTGGAATGT 57.604 29.630 0.00 0.00 36.79 2.71
97 98 9.953697 AAAAGTAACAACATTTATGTCGCTAAA 57.046 25.926 0.00 0.00 40.80 1.85
98 99 9.953697 AAAAAGTAACAACATTTATGTCGCTAA 57.046 25.926 0.00 0.00 40.80 3.09
144 145 9.642327 GGTTTGTCCTAAGTCAAAGTTTTAAAA 57.358 29.630 0.00 0.00 32.78 1.52
145 146 9.027202 AGGTTTGTCCTAAGTCAAAGTTTTAAA 57.973 29.630 0.00 0.00 46.10 1.52
146 147 8.584063 AGGTTTGTCCTAAGTCAAAGTTTTAA 57.416 30.769 0.00 0.00 46.10 1.52
147 148 9.333724 CTAGGTTTGTCCTAAGTCAAAGTTTTA 57.666 33.333 0.00 0.00 46.81 1.52
148 149 8.050930 TCTAGGTTTGTCCTAAGTCAAAGTTTT 58.949 33.333 0.00 0.00 46.81 2.43
149 150 7.571025 TCTAGGTTTGTCCTAAGTCAAAGTTT 58.429 34.615 0.00 0.00 46.81 2.66
150 151 7.133133 TCTAGGTTTGTCCTAAGTCAAAGTT 57.867 36.000 0.00 0.00 46.81 2.66
151 152 6.742559 TCTAGGTTTGTCCTAAGTCAAAGT 57.257 37.500 0.00 0.00 46.81 2.66
152 153 7.162082 ACATCTAGGTTTGTCCTAAGTCAAAG 58.838 38.462 0.00 0.00 46.81 2.77
153 154 7.074653 ACATCTAGGTTTGTCCTAAGTCAAA 57.925 36.000 0.00 0.00 46.81 2.69
154 155 6.681729 ACATCTAGGTTTGTCCTAAGTCAA 57.318 37.500 0.00 0.00 46.81 3.18
155 156 6.722590 TGTACATCTAGGTTTGTCCTAAGTCA 59.277 38.462 0.00 0.00 46.81 3.41
156 157 7.034397 GTGTACATCTAGGTTTGTCCTAAGTC 58.966 42.308 0.00 0.00 46.81 3.01
157 158 6.724905 AGTGTACATCTAGGTTTGTCCTAAGT 59.275 38.462 0.00 0.00 46.81 2.24
158 159 7.171630 AGTGTACATCTAGGTTTGTCCTAAG 57.828 40.000 0.00 0.00 46.81 2.18
159 160 7.549147 AAGTGTACATCTAGGTTTGTCCTAA 57.451 36.000 0.00 0.00 46.81 2.69
160 161 8.834004 ATAAGTGTACATCTAGGTTTGTCCTA 57.166 34.615 0.00 0.00 46.10 2.94
162 163 7.222224 CGAATAAGTGTACATCTAGGTTTGTCC 59.778 40.741 0.00 0.00 0.00 4.02
163 164 7.254017 GCGAATAAGTGTACATCTAGGTTTGTC 60.254 40.741 0.00 0.00 0.00 3.18
164 165 6.534079 GCGAATAAGTGTACATCTAGGTTTGT 59.466 38.462 0.00 0.00 0.00 2.83
165 166 6.018994 GGCGAATAAGTGTACATCTAGGTTTG 60.019 42.308 0.00 0.00 0.00 2.93
166 167 6.047231 GGCGAATAAGTGTACATCTAGGTTT 58.953 40.000 0.00 0.00 0.00 3.27
167 168 5.598769 GGCGAATAAGTGTACATCTAGGTT 58.401 41.667 0.00 0.00 0.00 3.50
168 169 4.261489 CGGCGAATAAGTGTACATCTAGGT 60.261 45.833 0.00 0.00 0.00 3.08
169 170 4.023450 TCGGCGAATAAGTGTACATCTAGG 60.023 45.833 7.35 0.00 0.00 3.02
170 171 5.104562 TCGGCGAATAAGTGTACATCTAG 57.895 43.478 7.35 0.00 0.00 2.43
171 172 5.458015 CATCGGCGAATAAGTGTACATCTA 58.542 41.667 15.93 0.00 0.00 1.98
172 173 4.299155 CATCGGCGAATAAGTGTACATCT 58.701 43.478 15.93 0.00 0.00 2.90
173 174 3.428870 CCATCGGCGAATAAGTGTACATC 59.571 47.826 15.93 0.00 0.00 3.06
174 175 3.181469 ACCATCGGCGAATAAGTGTACAT 60.181 43.478 15.93 0.00 0.00 2.29
175 176 2.166870 ACCATCGGCGAATAAGTGTACA 59.833 45.455 15.93 0.00 0.00 2.90
176 177 2.538449 CACCATCGGCGAATAAGTGTAC 59.462 50.000 15.93 0.00 0.00 2.90
177 178 2.482316 CCACCATCGGCGAATAAGTGTA 60.482 50.000 15.93 0.00 0.00 2.90
178 179 1.651987 CACCATCGGCGAATAAGTGT 58.348 50.000 15.93 1.96 0.00 3.55
179 180 0.937304 CCACCATCGGCGAATAAGTG 59.063 55.000 15.93 17.86 0.00 3.16
180 181 0.179056 CCCACCATCGGCGAATAAGT 60.179 55.000 15.93 6.14 0.00 2.24
181 182 0.105964 TCCCACCATCGGCGAATAAG 59.894 55.000 15.93 5.43 0.00 1.73
182 183 0.105964 CTCCCACCATCGGCGAATAA 59.894 55.000 15.93 0.00 0.00 1.40
183 184 1.046472 ACTCCCACCATCGGCGAATA 61.046 55.000 15.93 0.00 0.00 1.75
184 185 1.046472 TACTCCCACCATCGGCGAAT 61.046 55.000 15.93 0.00 0.00 3.34
185 186 1.046472 ATACTCCCACCATCGGCGAA 61.046 55.000 15.93 0.00 0.00 4.70
186 187 1.456892 ATACTCCCACCATCGGCGA 60.457 57.895 13.87 13.87 0.00 5.54
187 188 1.300931 CATACTCCCACCATCGGCG 60.301 63.158 0.00 0.00 0.00 6.46
188 189 0.532862 CACATACTCCCACCATCGGC 60.533 60.000 0.00 0.00 0.00 5.54
189 190 0.106708 CCACATACTCCCACCATCGG 59.893 60.000 0.00 0.00 0.00 4.18
190 191 0.830648 ACCACATACTCCCACCATCG 59.169 55.000 0.00 0.00 0.00 3.84
191 192 3.039011 ACTACCACATACTCCCACCATC 58.961 50.000 0.00 0.00 0.00 3.51
192 193 3.039011 GACTACCACATACTCCCACCAT 58.961 50.000 0.00 0.00 0.00 3.55
193 194 2.463752 GACTACCACATACTCCCACCA 58.536 52.381 0.00 0.00 0.00 4.17
194 195 1.761198 GGACTACCACATACTCCCACC 59.239 57.143 0.00 0.00 35.97 4.61
195 196 2.463752 TGGACTACCACATACTCCCAC 58.536 52.381 0.00 0.00 41.77 4.61
196 197 2.932184 TGGACTACCACATACTCCCA 57.068 50.000 0.00 0.00 41.77 4.37
228 229 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
229 230 7.886446 TCCTCCGTTCCTAAATATTTGTCTTTT 59.114 33.333 11.05 0.00 0.00 2.27
230 231 7.399634 TCCTCCGTTCCTAAATATTTGTCTTT 58.600 34.615 11.05 0.00 0.00 2.52
231 232 6.954232 TCCTCCGTTCCTAAATATTTGTCTT 58.046 36.000 11.05 0.00 0.00 3.01
232 233 6.555463 TCCTCCGTTCCTAAATATTTGTCT 57.445 37.500 11.05 0.00 0.00 3.41
233 234 6.822170 ACTTCCTCCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
234 235 6.718294 ACTTCCTCCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
235 236 8.610035 GTTACTTCCTCCGTTCCTAAATATTTG 58.390 37.037 11.05 1.40 0.00 2.32
236 237 8.546322 AGTTACTTCCTCCGTTCCTAAATATTT 58.454 33.333 5.89 5.89 0.00 1.40
237 238 8.087303 AGTTACTTCCTCCGTTCCTAAATATT 57.913 34.615 0.00 0.00 0.00 1.28
238 239 7.672122 AGTTACTTCCTCCGTTCCTAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
239 240 8.773033 ATAGTTACTTCCTCCGTTCCTAAATA 57.227 34.615 0.00 0.00 0.00 1.40
240 241 7.343833 TGATAGTTACTTCCTCCGTTCCTAAAT 59.656 37.037 0.00 0.00 0.00 1.40
241 242 6.664816 TGATAGTTACTTCCTCCGTTCCTAAA 59.335 38.462 0.00 0.00 0.00 1.85
242 243 6.189859 TGATAGTTACTTCCTCCGTTCCTAA 58.810 40.000 0.00 0.00 0.00 2.69
243 244 5.759059 TGATAGTTACTTCCTCCGTTCCTA 58.241 41.667 0.00 0.00 0.00 2.94
244 245 4.607239 TGATAGTTACTTCCTCCGTTCCT 58.393 43.478 0.00 0.00 0.00 3.36
245 246 4.996788 TGATAGTTACTTCCTCCGTTCC 57.003 45.455 0.00 0.00 0.00 3.62
246 247 4.745620 GCATGATAGTTACTTCCTCCGTTC 59.254 45.833 0.00 0.00 0.00 3.95
247 248 4.161565 TGCATGATAGTTACTTCCTCCGTT 59.838 41.667 0.00 0.00 0.00 4.44
248 249 3.704566 TGCATGATAGTTACTTCCTCCGT 59.295 43.478 0.00 0.00 0.00 4.69
249 250 4.322080 TGCATGATAGTTACTTCCTCCG 57.678 45.455 0.00 0.00 0.00 4.63
250 251 5.858381 TCATGCATGATAGTTACTTCCTCC 58.142 41.667 25.42 0.00 0.00 4.30
251 252 6.989169 AGTTCATGCATGATAGTTACTTCCTC 59.011 38.462 29.13 2.19 36.56 3.71
252 253 6.893583 AGTTCATGCATGATAGTTACTTCCT 58.106 36.000 29.13 6.22 36.56 3.36
253 254 7.559590 AAGTTCATGCATGATAGTTACTTCC 57.440 36.000 29.13 3.22 36.56 3.46
254 255 8.887717 AGAAAGTTCATGCATGATAGTTACTTC 58.112 33.333 30.03 24.27 33.90 3.01
255 256 8.798859 AGAAAGTTCATGCATGATAGTTACTT 57.201 30.769 29.13 27.78 35.52 2.24
256 257 7.497249 GGAGAAAGTTCATGCATGATAGTTACT 59.503 37.037 29.13 24.18 36.56 2.24
257 258 7.517417 CGGAGAAAGTTCATGCATGATAGTTAC 60.517 40.741 29.13 22.44 36.56 2.50
263 264 3.614092 ACGGAGAAAGTTCATGCATGAT 58.386 40.909 29.13 15.09 36.56 2.45
265 266 3.058016 ACAACGGAGAAAGTTCATGCATG 60.058 43.478 21.07 21.07 0.00 4.06
283 284 0.102300 GTTGAGGCCCACAACACAAC 59.898 55.000 27.51 16.37 44.49 3.32
285 286 0.751277 CAGTTGAGGCCCACAACACA 60.751 55.000 31.16 8.66 46.58 3.72
304 305 4.427312 CAAGGCAAAGCATAGGAAATGAC 58.573 43.478 0.00 0.00 0.00 3.06
311 312 1.106285 GTCCCAAGGCAAAGCATAGG 58.894 55.000 0.00 0.00 0.00 2.57
323 324 0.250727 TTTTCTGGCGGAGTCCCAAG 60.251 55.000 2.80 0.00 30.66 3.61
325 326 0.250727 CTTTTTCTGGCGGAGTCCCA 60.251 55.000 2.80 0.00 0.00 4.37
326 327 0.036306 TCTTTTTCTGGCGGAGTCCC 59.964 55.000 2.80 0.00 0.00 4.46
334 335 2.031333 CACTGTGAGCTCTTTTTCTGGC 60.031 50.000 16.19 0.00 0.00 4.85
351 352 6.528537 TTATGGGAAATCAAACATCCACTG 57.471 37.500 0.00 0.00 34.82 3.66
358 359 7.870445 GCTTGTACTTTTATGGGAAATCAAACA 59.130 33.333 0.00 0.00 0.00 2.83
359 360 8.088365 AGCTTGTACTTTTATGGGAAATCAAAC 58.912 33.333 0.00 0.00 0.00 2.93
363 364 6.036470 GCAGCTTGTACTTTTATGGGAAATC 58.964 40.000 0.00 0.00 0.00 2.17
364 365 5.480073 TGCAGCTTGTACTTTTATGGGAAAT 59.520 36.000 0.00 0.00 0.00 2.17
373 374 7.169813 GCTTTTATTTCTGCAGCTTGTACTTTT 59.830 33.333 9.47 0.00 0.00 2.27
383 384 2.268730 AGCGCTTTTATTTCTGCAGC 57.731 45.000 9.47 0.00 0.00 5.25
386 387 6.927933 TTAAAGAAGCGCTTTTATTTCTGC 57.072 33.333 25.84 7.88 44.24 4.26
408 422 1.002900 CAGTGTCGTTCGGTTTGCATT 60.003 47.619 0.00 0.00 0.00 3.56
416 430 1.191647 GTTAACTGCAGTGTCGTTCGG 59.808 52.381 22.49 0.00 0.00 4.30
449 464 3.519667 TGGAGGAAATTTGCAGGGAAAT 58.480 40.909 12.54 0.00 0.00 2.17
450 465 2.969628 TGGAGGAAATTTGCAGGGAAA 58.030 42.857 12.54 0.00 0.00 3.13
460 476 4.096681 GGTTTGGAGGAATGGAGGAAATT 58.903 43.478 0.00 0.00 0.00 1.82
472 488 1.146485 TTGCGTTCGGTTTGGAGGA 59.854 52.632 0.00 0.00 0.00 3.71
473 489 1.281656 GTTGCGTTCGGTTTGGAGG 59.718 57.895 0.00 0.00 0.00 4.30
474 490 1.281656 GGTTGCGTTCGGTTTGGAG 59.718 57.895 0.00 0.00 0.00 3.86
493 512 2.125512 GCCGAGGCACCACACTAG 60.126 66.667 9.58 0.00 41.49 2.57
508 527 2.674796 AACATACACGAGAGAAGGCC 57.325 50.000 0.00 0.00 0.00 5.19
509 528 4.106197 CACTAACATACACGAGAGAAGGC 58.894 47.826 0.00 0.00 0.00 4.35
573 592 7.018826 TGATCTTTTGTTTTCCTAAATACGCG 58.981 34.615 3.53 3.53 0.00 6.01
629 648 0.741915 GCAGACGGCTACTAGCTTCT 59.258 55.000 7.99 7.32 41.99 2.85
630 649 0.456221 TGCAGACGGCTACTAGCTTC 59.544 55.000 7.99 5.30 45.15 3.86
631 650 0.895530 TTGCAGACGGCTACTAGCTT 59.104 50.000 7.99 0.00 45.15 3.74
632 651 0.173708 GTTGCAGACGGCTACTAGCT 59.826 55.000 7.99 0.00 43.61 3.32
633 652 0.806492 GGTTGCAGACGGCTACTAGC 60.806 60.000 11.28 0.00 45.79 3.42
634 653 0.818296 AGGTTGCAGACGGCTACTAG 59.182 55.000 11.28 0.00 45.79 2.57
635 654 1.263356 AAGGTTGCAGACGGCTACTA 58.737 50.000 11.28 0.00 45.79 1.82
636 655 0.396811 AAAGGTTGCAGACGGCTACT 59.603 50.000 11.28 0.00 45.79 2.57
638 657 1.975660 AAAAAGGTTGCAGACGGCTA 58.024 45.000 0.00 0.00 45.15 3.93
676 731 3.810941 ACTTCGATTTTGCAACCGAGTTA 59.189 39.130 14.57 3.90 32.41 2.24
682 737 2.319472 GAGCACTTCGATTTTGCAACC 58.681 47.619 13.88 0.00 38.81 3.77
709 764 2.781681 TGGTAAGAAGCTTACTGGGC 57.218 50.000 14.75 2.19 0.00 5.36
718 773 0.803117 GACGGGCTTTGGTAAGAAGC 59.197 55.000 0.41 0.41 46.71 3.86
719 774 2.076863 CTGACGGGCTTTGGTAAGAAG 58.923 52.381 0.00 0.00 32.92 2.85
720 775 1.880646 GCTGACGGGCTTTGGTAAGAA 60.881 52.381 0.00 0.00 32.92 2.52
721 776 0.321298 GCTGACGGGCTTTGGTAAGA 60.321 55.000 0.00 0.00 32.92 2.10
749 808 0.676782 AGAGTTTACATGGGCCGTGC 60.677 55.000 25.52 9.25 0.00 5.34
752 811 1.379527 GGAAGAGTTTACATGGGCCG 58.620 55.000 0.00 0.00 0.00 6.13
807 866 2.740055 CTGTCAGCGAGTGTGGGC 60.740 66.667 0.00 0.00 0.00 5.36
827 886 1.251527 AATCGCCTCGACCAGTGACT 61.252 55.000 0.00 0.00 39.18 3.41
828 887 0.802607 GAATCGCCTCGACCAGTGAC 60.803 60.000 0.00 0.00 39.18 3.67
829 888 1.511305 GAATCGCCTCGACCAGTGA 59.489 57.895 0.00 0.00 39.18 3.41
831 890 1.682684 AGGAATCGCCTCGACCAGT 60.683 57.895 0.00 0.00 46.97 4.00
832 891 3.211288 AGGAATCGCCTCGACCAG 58.789 61.111 0.00 0.00 46.97 4.00
913 972 4.918201 GAGGCCGAGCGATTGGGG 62.918 72.222 9.46 0.00 0.00 4.96
1270 1333 1.425428 CCGCTTCGACTGAAATGGC 59.575 57.895 0.00 0.00 32.66 4.40
1476 1545 7.534723 AACATGCCATCTTCTAATAATGCAT 57.465 32.000 0.00 0.00 0.00 3.96
1681 1750 5.385198 TCTTTACAAAGGAATCAACAGGCT 58.615 37.500 2.04 0.00 36.67 4.58
1773 1842 7.458409 ACTGTCAGCTCAAATTAATGTTCAT 57.542 32.000 0.00 0.00 0.00 2.57
1941 2010 4.530875 CAAGGAAGGCTATTGAGATGGTT 58.469 43.478 0.00 0.00 0.00 3.67
2024 2102 0.945813 GCATCAGATGAAGGCAGAGC 59.054 55.000 15.12 0.00 0.00 4.09
2025 2103 2.214347 CAGCATCAGATGAAGGCAGAG 58.786 52.381 15.12 0.00 31.30 3.35
2026 2104 1.134189 CCAGCATCAGATGAAGGCAGA 60.134 52.381 15.12 0.00 31.30 4.26
2027 2105 1.309950 CCAGCATCAGATGAAGGCAG 58.690 55.000 15.12 0.00 31.30 4.85
2028 2106 0.750546 GCCAGCATCAGATGAAGGCA 60.751 55.000 28.50 0.00 45.34 4.75
2029 2107 0.465824 AGCCAGCATCAGATGAAGGC 60.466 55.000 27.19 27.19 45.94 4.35
2030 2108 1.141254 AGAGCCAGCATCAGATGAAGG 59.859 52.381 15.12 14.66 31.30 3.46
2031 2109 2.214347 CAGAGCCAGCATCAGATGAAG 58.786 52.381 15.12 5.15 31.30 3.02
2032 2110 1.746171 GCAGAGCCAGCATCAGATGAA 60.746 52.381 15.12 0.00 31.30 2.57
2033 2111 0.179054 GCAGAGCCAGCATCAGATGA 60.179 55.000 15.12 0.00 31.30 2.92
2034 2112 2.322212 GCAGAGCCAGCATCAGATG 58.678 57.895 5.98 5.98 0.00 2.90
2035 2113 4.881057 GCAGAGCCAGCATCAGAT 57.119 55.556 0.00 0.00 0.00 2.90
2417 2525 2.557924 TGGTTGATGTTTAAGGCTGCTG 59.442 45.455 0.00 0.00 0.00 4.41
2478 2586 7.824704 ATTGATATGATCATGACTTCGTAGC 57.175 36.000 18.72 2.12 39.39 3.58
2701 2810 2.459644 CCCAATGGCAAAGATGAAGGA 58.540 47.619 0.00 0.00 0.00 3.36
2774 2883 2.565834 GGTAAGGGTTCACTGAGTAGCA 59.434 50.000 0.00 0.00 0.00 3.49
2810 2919 7.924947 AGGTTATGCGTATCTACTAAAGAAACC 59.075 37.037 0.00 0.00 37.89 3.27
2894 3024 3.050275 GTCAACTGGAGGCGCACC 61.050 66.667 10.83 13.11 0.00 5.01
2899 3029 0.033504 TCGTCTTGTCAACTGGAGGC 59.966 55.000 0.00 0.00 0.00 4.70
2908 3038 4.112634 CTGTTCTTTGACTCGTCTTGTCA 58.887 43.478 0.00 0.00 41.94 3.58
2925 3055 3.948473 GCCTCTATTCTTTTCCCCTGTTC 59.052 47.826 0.00 0.00 0.00 3.18
2950 3080 0.305313 CGCTCTAGCCTAGTCACGTC 59.695 60.000 0.00 0.00 37.91 4.34
3159 3295 5.184287 TCGTTTGGACAGATATACACTGACA 59.816 40.000 13.46 9.71 38.55 3.58
3182 3320 2.371910 AGAGGCTTACGTTGAGCTTC 57.628 50.000 20.71 20.71 44.02 3.86
3246 3384 3.996480 ACTCTCCAAACTAGCAGTTGAC 58.004 45.455 2.88 0.00 38.66 3.18
3283 3430 1.214175 TCTCCAAGCCCAAAACTGTCA 59.786 47.619 0.00 0.00 0.00 3.58
3284 3431 1.981256 TCTCCAAGCCCAAAACTGTC 58.019 50.000 0.00 0.00 0.00 3.51
3285 3432 2.629617 CAATCTCCAAGCCCAAAACTGT 59.370 45.455 0.00 0.00 0.00 3.55
3286 3433 2.892852 TCAATCTCCAAGCCCAAAACTG 59.107 45.455 0.00 0.00 0.00 3.16
3287 3434 3.243359 TCAATCTCCAAGCCCAAAACT 57.757 42.857 0.00 0.00 0.00 2.66
3288 3435 4.541973 AATCAATCTCCAAGCCCAAAAC 57.458 40.909 0.00 0.00 0.00 2.43
3289 3436 6.352051 CCATTAATCAATCTCCAAGCCCAAAA 60.352 38.462 0.00 0.00 0.00 2.44
3290 3437 5.129155 CCATTAATCAATCTCCAAGCCCAAA 59.871 40.000 0.00 0.00 0.00 3.28
3291 3438 4.650588 CCATTAATCAATCTCCAAGCCCAA 59.349 41.667 0.00 0.00 0.00 4.12
3292 3439 4.217510 CCATTAATCAATCTCCAAGCCCA 58.782 43.478 0.00 0.00 0.00 5.36
3299 3446 4.759183 GTCTGAGCCCATTAATCAATCTCC 59.241 45.833 0.00 0.00 0.00 3.71
3321 3468 2.231235 GACCATGAATTTTTGCCCGAGT 59.769 45.455 0.00 0.00 0.00 4.18
3350 3497 4.942483 AGAGATGCTGAATGAAGGAAACAG 59.058 41.667 0.00 0.00 0.00 3.16
3474 3622 7.327761 TGTTGTTTACTCGTTTAGATAGACTGC 59.672 37.037 0.00 0.00 0.00 4.40
3507 3655 9.959749 GTGTTTCTTAAAAGTTTATCCATCACA 57.040 29.630 0.00 0.00 0.00 3.58
3508 3656 9.959749 TGTGTTTCTTAAAAGTTTATCCATCAC 57.040 29.630 0.00 0.00 0.00 3.06
3782 3930 8.910944 GGATCTGACAGTAACTAATAACTACCA 58.089 37.037 1.59 0.00 0.00 3.25
3783 3931 9.134055 AGGATCTGACAGTAACTAATAACTACC 57.866 37.037 1.59 0.00 0.00 3.18
3873 4021 5.462729 TGCAGAGCAATAACACAAACAAATG 59.537 36.000 0.00 0.00 34.76 2.32
3959 4108 6.393171 ACGGTAACTAATGACTACCAAGAAC 58.607 40.000 0.00 0.00 35.75 3.01
4049 4199 2.907458 AGACAGGGATGGGGAAAAAG 57.093 50.000 0.00 0.00 0.00 2.27
4051 4201 4.965283 AATAAGACAGGGATGGGGAAAA 57.035 40.909 0.00 0.00 0.00 2.29
4055 4205 3.669939 ACAAATAAGACAGGGATGGGG 57.330 47.619 0.00 0.00 0.00 4.96
4063 4213 8.492673 TGAAGGCTAACATACAAATAAGACAG 57.507 34.615 0.00 0.00 0.00 3.51
4067 4217 8.131100 CACCATGAAGGCTAACATACAAATAAG 58.869 37.037 0.00 0.00 43.14 1.73
4217 4367 3.260884 GTCTTTGGTAGATGACAGGGACA 59.739 47.826 0.00 0.00 34.79 4.02
4224 4374 5.091261 ACCTCATGTCTTTGGTAGATGAC 57.909 43.478 0.00 0.00 34.79 3.06
4254 4404 6.073980 CCATTCTTTGACAAATCTGCACAAAG 60.074 38.462 14.34 14.34 43.65 2.77
4255 4405 5.754406 CCATTCTTTGACAAATCTGCACAAA 59.246 36.000 0.05 0.00 33.86 2.83
4257 4407 4.583907 TCCATTCTTTGACAAATCTGCACA 59.416 37.500 0.05 0.00 0.00 4.57
4416 4566 0.674581 CGATGGGCTGAAGCAAGACA 60.675 55.000 4.43 0.00 44.36 3.41
4484 4634 1.396996 CTCGTAGCAAATTTCGGGGTG 59.603 52.381 0.00 0.00 0.00 4.61
4604 4754 6.262273 ACACGTTACATCAACAAAAGGAGATT 59.738 34.615 0.00 0.00 36.92 2.40
4609 4759 5.418310 AGACACGTTACATCAACAAAAGG 57.582 39.130 0.00 0.00 36.92 3.11
4710 4864 2.336945 TCAGGCTGATATGGCAACTG 57.663 50.000 14.43 0.00 37.61 3.16
4832 4992 1.087771 CCGGGTCAGATTTACCGTGC 61.088 60.000 0.00 0.00 44.57 5.34
4850 5010 2.664436 CGCACTCCGACGGAAAACC 61.664 63.158 18.93 5.80 40.02 3.27
4858 5018 4.072088 CCGCAAACGCACTCCGAC 62.072 66.667 0.00 0.00 41.02 4.79
4860 5020 5.936316 TATATACCCGCAAACGCACTCCG 62.936 52.174 0.00 0.00 44.21 4.63
4889 5049 2.174319 GCCGATGAAGGGAAGCGAC 61.174 63.158 0.00 0.00 0.00 5.19
4902 5062 4.760047 GAGTGTGGTGGCGCCGAT 62.760 66.667 23.90 1.28 41.21 4.18
4912 5072 0.824109 TGAATAGAGGGCGAGTGTGG 59.176 55.000 0.00 0.00 0.00 4.17
4926 5086 2.026729 TGGCGACAGGAATTGGTGAATA 60.027 45.455 0.00 0.00 35.01 1.75
4927 5087 1.271871 TGGCGACAGGAATTGGTGAAT 60.272 47.619 0.00 0.00 35.01 2.57
4928 5088 0.109532 TGGCGACAGGAATTGGTGAA 59.890 50.000 0.00 0.00 35.01 3.18
4929 5089 1.757949 TGGCGACAGGAATTGGTGA 59.242 52.632 0.00 0.00 35.01 4.02
4930 5090 4.395519 TGGCGACAGGAATTGGTG 57.604 55.556 0.00 0.00 35.01 4.17
4990 5156 1.134068 GTAATGGGGAAGAGAGGGTGC 60.134 57.143 0.00 0.00 0.00 5.01
5032 5199 3.508840 GCAAATGGTCCGCGGAGG 61.509 66.667 31.97 14.78 42.97 4.30
5038 5205 3.814268 CCGCTGGCAAATGGTCCG 61.814 66.667 0.00 0.00 0.00 4.79
5065 5232 4.530857 CCTTCGGCTGCGGGTAGG 62.531 72.222 7.38 10.32 0.00 3.18
5103 5270 3.257127 ACAAGTTCTTCCTCTTCTCCGAG 59.743 47.826 0.00 0.00 0.00 4.63
5176 5343 6.316390 GTGATGGATTTGAAGAAGGATTACGT 59.684 38.462 0.00 0.00 0.00 3.57
5177 5344 6.510157 CGTGATGGATTTGAAGAAGGATTACG 60.510 42.308 0.00 0.00 0.00 3.18
5193 5360 7.389803 TTCAACATGAATTTACGTGATGGAT 57.610 32.000 0.00 0.00 30.26 3.41
5199 5366 9.787532 ATTAGGATTTCAACATGAATTTACGTG 57.212 29.630 0.00 0.00 36.11 4.49
5239 5406 5.289083 AGGGCAACTCTATCAGAATTCTC 57.711 43.478 4.57 0.00 0.00 2.87
5254 5421 4.439057 TCATACGAGATTGTAAGGGCAAC 58.561 43.478 0.00 0.00 0.00 4.17
5259 5426 5.531122 TCCCTTCATACGAGATTGTAAGG 57.469 43.478 0.00 0.00 0.00 2.69
5271 5438 5.117406 AGAAACCCTTGATCCCTTCATAC 57.883 43.478 0.00 0.00 33.34 2.39
5301 5468 4.263331 GGTTGAAGTTGATCTTAGGGTCCA 60.263 45.833 0.00 0.00 36.40 4.02
5308 5475 3.007506 TCGCTGGGTTGAAGTTGATCTTA 59.992 43.478 0.00 0.00 36.40 2.10
5310 5477 1.347707 TCGCTGGGTTGAAGTTGATCT 59.652 47.619 0.00 0.00 0.00 2.75
5311 5478 1.464997 GTCGCTGGGTTGAAGTTGATC 59.535 52.381 0.00 0.00 0.00 2.92
5312 5479 1.523758 GTCGCTGGGTTGAAGTTGAT 58.476 50.000 0.00 0.00 0.00 2.57
5313 5480 0.534203 GGTCGCTGGGTTGAAGTTGA 60.534 55.000 0.00 0.00 0.00 3.18
5319 5486 0.178975 AAAATGGGTCGCTGGGTTGA 60.179 50.000 0.00 0.00 0.00 3.18
5327 5494 0.312729 AAACGGACAAAATGGGTCGC 59.687 50.000 0.00 0.00 36.12 5.19
5334 5501 3.255642 CAGATGACCCAAACGGACAAAAT 59.744 43.478 0.00 0.00 39.83 1.82
5335 5502 2.621055 CAGATGACCCAAACGGACAAAA 59.379 45.455 0.00 0.00 39.83 2.44
5336 5503 2.226330 CAGATGACCCAAACGGACAAA 58.774 47.619 0.00 0.00 39.83 2.83
5337 5504 1.544537 CCAGATGACCCAAACGGACAA 60.545 52.381 0.00 0.00 39.83 3.18
5338 5505 0.036164 CCAGATGACCCAAACGGACA 59.964 55.000 0.00 0.00 40.71 4.02
5339 5506 0.323629 TCCAGATGACCCAAACGGAC 59.676 55.000 0.00 0.00 34.64 4.79
5341 5508 0.036164 TGTCCAGATGACCCAAACGG 59.964 55.000 0.00 0.00 43.78 4.44
5349 5525 3.057946 GCCAACTTTTCTGTCCAGATGAC 60.058 47.826 0.00 0.00 44.72 3.06
5355 5531 0.260230 TGGGCCAACTTTTCTGTCCA 59.740 50.000 2.13 0.00 0.00 4.02
5380 5556 2.178235 GGATAGCCGTTTGGGTCGC 61.178 63.158 0.00 0.00 44.55 5.19
5381 5557 4.120085 GGATAGCCGTTTGGGTCG 57.880 61.111 0.00 0.00 44.55 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.