Multiple sequence alignment - TraesCS4D01G266100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G266100 chr4D 100.000 3614 0 0 1 3614 436379830 436376217 0.000000e+00 6674.0
1 TraesCS4D01G266100 chr4D 94.425 1722 78 11 707 2422 436836758 436838467 0.000000e+00 2632.0
2 TraesCS4D01G266100 chr4D 88.157 1047 109 5 664 1706 436697054 436698089 0.000000e+00 1232.0
3 TraesCS4D01G266100 chr4D 82.500 880 92 30 1833 2678 436698204 436699055 0.000000e+00 715.0
4 TraesCS4D01G266100 chr4D 96.445 422 8 6 3198 3614 436874044 436874463 0.000000e+00 689.0
5 TraesCS4D01G266100 chr4D 94.817 328 17 0 2426 2753 436862541 436862868 2.490000e-141 512.0
6 TraesCS4D01G266100 chr4D 88.124 421 47 3 3172 3592 436713932 436714349 6.970000e-137 497.0
7 TraesCS4D01G266100 chr4D 93.972 282 14 2 2751 3032 436872616 436872894 1.200000e-114 424.0
8 TraesCS4D01G266100 chr4D 89.506 162 17 0 3431 3592 436722133 436722294 4.730000e-49 206.0
9 TraesCS4D01G266100 chr4D 84.018 219 22 12 2820 3031 436713613 436713825 7.910000e-47 198.0
10 TraesCS4D01G266100 chr4D 91.525 118 10 0 2675 2792 436713037 436713154 2.890000e-36 163.0
11 TraesCS4D01G266100 chr4D 92.754 69 5 0 3112 3180 436872891 436872959 2.300000e-17 100.0
12 TraesCS4D01G266100 chr4A 97.650 2596 50 9 442 3033 31621252 31623840 0.000000e+00 4446.0
13 TraesCS4D01G266100 chr4A 94.242 1650 81 8 745 2392 31596495 31594858 0.000000e+00 2508.0
14 TraesCS4D01G266100 chr4A 96.388 443 6 1 3172 3614 31623939 31624371 0.000000e+00 721.0
15 TraesCS4D01G266100 chr4A 94.130 460 26 1 1 460 31620613 31621071 0.000000e+00 699.0
16 TraesCS4D01G266100 chr4A 93.454 443 26 3 3172 3614 31593819 31593380 0.000000e+00 654.0
17 TraesCS4D01G266100 chr4A 94.430 377 21 0 2414 2790 31594582 31594206 6.730000e-162 580.0
18 TraesCS4D01G266100 chr4A 90.909 242 21 1 2788 3028 31594146 31593905 1.250000e-84 324.0
19 TraesCS4D01G266100 chr4A 94.118 68 4 0 3113 3180 31623840 31623907 1.770000e-18 104.0
20 TraesCS4D01G266100 chr4A 94.915 59 2 1 666 723 31596551 31596493 1.380000e-14 91.6
21 TraesCS4D01G266100 chr4B 95.032 2778 92 24 1 2771 538271057 538268319 0.000000e+00 4324.0
22 TraesCS4D01G266100 chr4B 96.002 2126 77 6 666 2790 538673170 538675288 0.000000e+00 3448.0
23 TraesCS4D01G266100 chr4B 86.239 1279 138 23 666 1924 538385000 538386260 0.000000e+00 1352.0
24 TraesCS4D01G266100 chr4B 80.151 1058 181 22 664 1706 568410009 568411052 0.000000e+00 763.0
25 TraesCS4D01G266100 chr4B 97.297 444 9 3 3172 3614 538267786 538267345 0.000000e+00 750.0
26 TraesCS4D01G266100 chr4B 84.083 823 81 25 1998 2792 538386260 538387060 0.000000e+00 749.0
27 TraesCS4D01G266100 chr4B 84.334 683 73 16 2125 2792 538372079 538372742 3.940000e-179 638.0
28 TraesCS4D01G266100 chr4B 95.685 394 16 1 3172 3565 538675673 538676065 1.830000e-177 632.0
29 TraesCS4D01G266100 chr4B 89.311 421 42 3 3172 3592 538387803 538388220 3.200000e-145 525.0
30 TraesCS4D01G266100 chr4B 95.341 279 6 4 2755 3032 538268155 538267883 1.540000e-118 436.0
31 TraesCS4D01G266100 chr4B 92.975 242 14 3 2788 3028 538675348 538675587 2.060000e-92 350.0
32 TraesCS4D01G266100 chr4B 85.648 216 24 6 2820 3031 538373193 538373405 1.690000e-53 220.0
33 TraesCS4D01G266100 chr4B 92.617 149 10 1 130 277 527984484 527984336 2.830000e-51 213.0
34 TraesCS4D01G266100 chr4B 76.421 475 65 22 2103 2561 568411062 568411505 2.830000e-51 213.0
35 TraesCS4D01G266100 chr4B 97.101 69 2 0 3112 3180 538267886 538267818 2.280000e-22 117.0
36 TraesCS4D01G266100 chr6B 74.509 1883 330 89 770 2557 236571655 236573482 0.000000e+00 680.0
37 TraesCS4D01G266100 chr6B 97.872 94 2 0 3021 3114 280098717 280098624 2.890000e-36 163.0
38 TraesCS4D01G266100 chr6B 87.692 130 15 1 179 308 236476759 236476887 2.250000e-32 150.0
39 TraesCS4D01G266100 chr1D 96.040 101 3 1 3017 3116 485967753 485967853 2.890000e-36 163.0
40 TraesCS4D01G266100 chr1D 96.842 95 3 0 3020 3114 463576518 463576612 3.730000e-35 159.0
41 TraesCS4D01G266100 chr5B 96.842 95 3 0 3020 3114 135750639 135750733 3.730000e-35 159.0
42 TraesCS4D01G266100 chr1A 95.960 99 2 2 3017 3114 133417450 133417547 3.730000e-35 159.0
43 TraesCS4D01G266100 chr5D 94.175 103 6 0 3015 3117 290807926 290807824 1.340000e-34 158.0
44 TraesCS4D01G266100 chr7B 93.333 105 5 2 3010 3114 414314436 414314538 1.740000e-33 154.0
45 TraesCS4D01G266100 chr6D 91.071 112 9 1 3021 3132 31474847 31474957 2.250000e-32 150.0
46 TraesCS4D01G266100 chr6A 92.453 106 7 1 3027 3132 31750248 31750144 2.250000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G266100 chr4D 436376217 436379830 3613 True 6674.000000 6674 100.000000 1 3614 1 chr4D.!!$R1 3613
1 TraesCS4D01G266100 chr4D 436836758 436838467 1709 False 2632.000000 2632 94.425000 707 2422 1 chr4D.!!$F2 1715
2 TraesCS4D01G266100 chr4D 436697054 436699055 2001 False 973.500000 1232 85.328500 664 2678 2 chr4D.!!$F4 2014
3 TraesCS4D01G266100 chr4D 436872616 436874463 1847 False 404.333333 689 94.390333 2751 3614 3 chr4D.!!$F6 863
4 TraesCS4D01G266100 chr4D 436713037 436714349 1312 False 286.000000 497 87.889000 2675 3592 3 chr4D.!!$F5 917
5 TraesCS4D01G266100 chr4A 31620613 31624371 3758 False 1492.500000 4446 95.571500 1 3614 4 chr4A.!!$F1 3613
6 TraesCS4D01G266100 chr4A 31593380 31596551 3171 True 831.520000 2508 93.590000 666 3614 5 chr4A.!!$R1 2948
7 TraesCS4D01G266100 chr4B 538673170 538676065 2895 False 1476.666667 3448 94.887333 666 3565 3 chr4B.!!$F3 2899
8 TraesCS4D01G266100 chr4B 538267345 538271057 3712 True 1406.750000 4324 96.192750 1 3614 4 chr4B.!!$R2 3613
9 TraesCS4D01G266100 chr4B 538385000 538388220 3220 False 875.333333 1352 86.544333 666 3592 3 chr4B.!!$F2 2926
10 TraesCS4D01G266100 chr4B 568410009 568411505 1496 False 488.000000 763 78.286000 664 2561 2 chr4B.!!$F4 1897
11 TraesCS4D01G266100 chr4B 538372079 538373405 1326 False 429.000000 638 84.991000 2125 3031 2 chr4B.!!$F1 906
12 TraesCS4D01G266100 chr6B 236571655 236573482 1827 False 680.000000 680 74.509000 770 2557 1 chr6B.!!$F2 1787

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 119 0.036105 AGATGCACGCATGGAAGTCA 60.036 50.0 9.7 0.0 36.7 3.41 F
122 123 0.110056 GCACGCATGGAAGTCACTTG 60.110 55.0 0.0 0.0 0.0 3.16 F
155 156 0.175989 GACGGGGATGGACAACTCTC 59.824 60.0 0.0 0.0 0.0 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1848 2090 3.866703 TGTGACCCCAAACTGTATGAA 57.133 42.857 0.0 0.0 0.0 2.57 R
1950 2221 4.033709 ACTCTCAGTACATATGGTTGCCT 58.966 43.478 7.8 0.0 0.0 4.75 R
2742 3341 9.023962 ACTAAAGAATCATTACCATGCAGAAAA 57.976 29.630 0.0 0.0 0.0 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 111 3.710044 CGTAGCAGATGCACGCAT 58.290 55.556 3.71 3.71 45.16 4.73
115 116 1.063649 GCAGATGCACGCATGGAAG 59.936 57.895 9.70 0.00 41.59 3.46
118 119 0.036105 AGATGCACGCATGGAAGTCA 60.036 50.000 9.70 0.00 36.70 3.41
120 121 0.321919 ATGCACGCATGGAAGTCACT 60.322 50.000 3.17 0.00 35.03 3.41
121 122 0.534877 TGCACGCATGGAAGTCACTT 60.535 50.000 0.00 0.00 0.00 3.16
122 123 0.110056 GCACGCATGGAAGTCACTTG 60.110 55.000 0.00 0.00 0.00 3.16
133 134 0.889306 AGTCACTTGCTCCGACTACC 59.111 55.000 0.00 0.00 38.22 3.18
155 156 0.175989 GACGGGGATGGACAACTCTC 59.824 60.000 0.00 0.00 0.00 3.20
162 163 1.482593 GATGGACAACTCTCCACGGAT 59.517 52.381 0.00 0.00 43.38 4.18
168 169 1.135139 CAACTCTCCACGGATGTCGAT 59.865 52.381 0.00 0.00 42.43 3.59
205 206 2.401583 AGCAGATGTACGCATGGAAA 57.598 45.000 0.00 0.00 35.07 3.13
207 208 4.071961 AGCAGATGTACGCATGGAAATA 57.928 40.909 0.00 0.00 35.07 1.40
310 311 3.614092 ACTGTATCTCAAGCAACATGGG 58.386 45.455 0.00 0.00 0.00 4.00
312 313 2.290832 TGTATCTCAAGCAACATGGGCA 60.291 45.455 13.20 0.00 0.00 5.36
328 329 0.677731 GGCACTATGCTGGTTGCTCA 60.678 55.000 0.13 0.00 44.28 4.26
379 382 4.043608 ACTGGAGGTAACAGTAGCTGTA 57.956 45.455 0.00 0.00 46.62 2.74
515 718 5.745227 TCTCTTGGGGTTCTGTTATTGATC 58.255 41.667 0.00 0.00 0.00 2.92
646 849 0.178992 ACCCCCATTATGATGTGCCG 60.179 55.000 0.00 0.00 0.00 5.69
1008 1213 1.354506 GCGCTCTCCAATGATGTGC 59.645 57.895 0.00 0.00 0.00 4.57
1040 1245 9.865321 CTCAACTTTGTTATGGATTTTCATCAT 57.135 29.630 0.00 0.00 0.00 2.45
1493 1704 3.057033 CCAAAGGAGAAGATGGTTTGCAG 60.057 47.826 0.00 0.00 0.00 4.41
1516 1727 5.122396 AGAGTGGCGTCAACAATCTATTTTC 59.878 40.000 0.00 0.00 40.97 2.29
1702 1917 7.870509 TCATTTTTACCTTCATCTCATCCAG 57.129 36.000 0.00 0.00 0.00 3.86
1747 1986 0.464036 CCCAGCCATAAGTAGCGACA 59.536 55.000 0.00 0.00 0.00 4.35
1846 2088 7.514721 TGTTCCACCTTAGATAACTTCTGTTT 58.485 34.615 0.00 0.00 37.59 2.83
1847 2089 8.653191 TGTTCCACCTTAGATAACTTCTGTTTA 58.347 33.333 0.00 0.00 37.59 2.01
1848 2090 9.668497 GTTCCACCTTAGATAACTTCTGTTTAT 57.332 33.333 0.00 0.00 37.59 1.40
2537 3136 2.751806 GTTTGGCAAAGAGAGAGGATGG 59.248 50.000 13.94 0.00 0.00 3.51
3033 4320 9.624697 TGCTCAATTTGTTTTTATCATGTACTC 57.375 29.630 0.00 0.00 0.00 2.59
3034 4321 9.076596 GCTCAATTTGTTTTTATCATGTACTCC 57.923 33.333 0.00 0.00 0.00 3.85
3035 4322 9.573133 CTCAATTTGTTTTTATCATGTACTCCC 57.427 33.333 0.00 0.00 0.00 4.30
3036 4323 9.308000 TCAATTTGTTTTTATCATGTACTCCCT 57.692 29.630 0.00 0.00 0.00 4.20
3037 4324 9.573133 CAATTTGTTTTTATCATGTACTCCCTC 57.427 33.333 0.00 0.00 0.00 4.30
3038 4325 7.696992 TTTGTTTTTATCATGTACTCCCTCC 57.303 36.000 0.00 0.00 0.00 4.30
3039 4326 5.424757 TGTTTTTATCATGTACTCCCTCCG 58.575 41.667 0.00 0.00 0.00 4.63
3040 4327 5.046159 TGTTTTTATCATGTACTCCCTCCGT 60.046 40.000 0.00 0.00 0.00 4.69
3041 4328 6.154877 TGTTTTTATCATGTACTCCCTCCGTA 59.845 38.462 0.00 0.00 0.00 4.02
3042 4329 6.795144 TTTTATCATGTACTCCCTCCGTAA 57.205 37.500 0.00 0.00 0.00 3.18
3043 4330 6.795144 TTTATCATGTACTCCCTCCGTAAA 57.205 37.500 0.00 0.00 0.00 2.01
3044 4331 4.667519 ATCATGTACTCCCTCCGTAAAC 57.332 45.455 0.00 0.00 0.00 2.01
3045 4332 3.705051 TCATGTACTCCCTCCGTAAACT 58.295 45.455 0.00 0.00 0.00 2.66
3046 4333 4.858850 TCATGTACTCCCTCCGTAAACTA 58.141 43.478 0.00 0.00 0.00 2.24
3047 4334 5.263599 TCATGTACTCCCTCCGTAAACTAA 58.736 41.667 0.00 0.00 0.00 2.24
3048 4335 5.895534 TCATGTACTCCCTCCGTAAACTAAT 59.104 40.000 0.00 0.00 0.00 1.73
3049 4336 7.062322 TCATGTACTCCCTCCGTAAACTAATA 58.938 38.462 0.00 0.00 0.00 0.98
3050 4337 7.727186 TCATGTACTCCCTCCGTAAACTAATAT 59.273 37.037 0.00 0.00 0.00 1.28
3051 4338 9.017509 CATGTACTCCCTCCGTAAACTAATATA 57.982 37.037 0.00 0.00 0.00 0.86
3052 4339 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
3053 4340 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
3054 4341 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
3055 4342 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3056 4343 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
3057 4344 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
3058 4345 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
3059 4346 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
3060 4347 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
3087 4374 9.733219 AGATCACTACTTTAGTAATCTAAACGC 57.267 33.333 0.00 0.00 40.05 4.84
3088 4375 9.733219 GATCACTACTTTAGTAATCTAAACGCT 57.267 33.333 0.00 0.00 40.05 5.07
3089 4376 9.733219 ATCACTACTTTAGTAATCTAAACGCTC 57.267 33.333 0.00 0.00 40.05 5.03
3090 4377 8.954350 TCACTACTTTAGTAATCTAAACGCTCT 58.046 33.333 0.00 0.00 40.05 4.09
3091 4378 9.570488 CACTACTTTAGTAATCTAAACGCTCTT 57.430 33.333 0.00 0.00 40.05 2.85
3108 4395 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
3109 4396 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
3120 4407 1.399714 TACAGAGGGAGTACATGCCG 58.600 55.000 0.00 0.00 46.07 5.69
3392 5780 2.706190 AGTAGAATGTATGGACCTGCCC 59.294 50.000 0.00 0.00 34.97 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 0.445436 GAGCAAGTGACTTCCATGCG 59.555 55.000 0.00 0.00 41.72 4.73
107 108 0.807496 GGAGCAAGTGACTTCCATGC 59.193 55.000 0.00 0.00 37.28 4.06
108 109 1.081892 CGGAGCAAGTGACTTCCATG 58.918 55.000 0.00 0.00 0.00 3.66
110 111 0.033504 GTCGGAGCAAGTGACTTCCA 59.966 55.000 0.00 0.00 0.00 3.53
115 116 0.108756 GGGTAGTCGGAGCAAGTGAC 60.109 60.000 0.00 0.00 0.00 3.67
118 119 0.251653 TCAGGGTAGTCGGAGCAAGT 60.252 55.000 0.00 0.00 0.00 3.16
120 121 1.592400 CGTCAGGGTAGTCGGAGCAA 61.592 60.000 0.00 0.00 0.00 3.91
121 122 2.044555 CGTCAGGGTAGTCGGAGCA 61.045 63.158 0.00 0.00 0.00 4.26
122 123 2.772691 CCGTCAGGGTAGTCGGAGC 61.773 68.421 0.00 0.00 44.86 4.70
133 134 1.078426 GTTGTCCATCCCCGTCAGG 60.078 63.158 0.00 0.00 37.24 3.86
155 156 3.441922 AGATATCTCATCGACATCCGTGG 59.558 47.826 0.00 0.00 39.75 4.94
205 206 0.760567 TGGATGTCGGAGCAGGCTAT 60.761 55.000 0.00 0.00 0.00 2.97
207 208 2.685017 TGGATGTCGGAGCAGGCT 60.685 61.111 0.00 0.00 0.00 4.58
328 329 3.228453 CATGCATAAATCTGGGAGGCTT 58.772 45.455 0.00 0.00 0.00 4.35
515 718 5.688823 TGCAGAACACATGAAGTTTAATCG 58.311 37.500 0.00 0.00 0.00 3.34
534 737 0.534427 ATCACGGGAGATGCATGCAG 60.534 55.000 26.69 13.49 0.00 4.41
1008 1213 8.574196 AAATCCATAACAAAGTTGAGAAAACG 57.426 30.769 0.00 0.00 0.00 3.60
1065 1270 6.701145 TCAGGTCAGAGTATTCTATGTGTC 57.299 41.667 0.00 0.00 34.84 3.67
1493 1704 4.946784 AAATAGATTGTTGACGCCACTC 57.053 40.909 0.00 0.00 0.00 3.51
1516 1727 6.205464 TCCTTTAATTTGTCTGACTTCAGCAG 59.795 38.462 9.51 0.00 43.46 4.24
1571 1785 4.695455 CCACTGTCAGTAGGTTTAACCATG 59.305 45.833 17.10 11.57 41.95 3.66
1702 1917 9.845305 GCACGAACTATATTAGACATTAAACAC 57.155 33.333 0.00 0.00 0.00 3.32
1747 1986 9.959721 ATAACAAACATGTGTAGGAACTAGAAT 57.040 29.630 0.00 0.00 44.14 2.40
1846 2088 5.506730 TGTGACCCCAAACTGTATGAATA 57.493 39.130 0.00 0.00 0.00 1.75
1847 2089 4.380843 TGTGACCCCAAACTGTATGAAT 57.619 40.909 0.00 0.00 0.00 2.57
1848 2090 3.866703 TGTGACCCCAAACTGTATGAA 57.133 42.857 0.00 0.00 0.00 2.57
1849 2091 4.380843 AATGTGACCCCAAACTGTATGA 57.619 40.909 0.00 0.00 0.00 2.15
1950 2221 4.033709 ACTCTCAGTACATATGGTTGCCT 58.966 43.478 7.80 0.00 0.00 4.75
2742 3341 9.023962 ACTAAAGAATCATTACCATGCAGAAAA 57.976 29.630 0.00 0.00 0.00 2.29
2965 4252 6.407202 ACAATGGTAGGATGACAGAAGTTAC 58.593 40.000 0.00 0.00 0.00 2.50
3032 4319 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
3033 4320 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
3034 4321 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
3062 4349 9.733219 AGCGTTTAGATTACTAAAGTAGTGATC 57.267 33.333 10.62 10.62 46.38 2.92
3063 4350 9.733219 GAGCGTTTAGATTACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
3064 4351 8.954350 AGAGCGTTTAGATTACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
3065 4352 9.570488 AAGAGCGTTTAGATTACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
3082 4369 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3083 4370 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3084 4371 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3085 4372 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3086 4373 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3092 4379 8.368668 GCATGTACTCCCTCTGTAAACTAATAT 58.631 37.037 0.00 0.00 0.00 1.28
3093 4380 7.201974 GGCATGTACTCCCTCTGTAAACTAATA 60.202 40.741 0.00 0.00 0.00 0.98
3094 4381 6.408206 GGCATGTACTCCCTCTGTAAACTAAT 60.408 42.308 0.00 0.00 0.00 1.73
3095 4382 5.105064 GGCATGTACTCCCTCTGTAAACTAA 60.105 44.000 0.00 0.00 0.00 2.24
3096 4383 4.404715 GGCATGTACTCCCTCTGTAAACTA 59.595 45.833 0.00 0.00 0.00 2.24
3097 4384 3.197983 GGCATGTACTCCCTCTGTAAACT 59.802 47.826 0.00 0.00 0.00 2.66
3098 4385 3.532542 GGCATGTACTCCCTCTGTAAAC 58.467 50.000 0.00 0.00 0.00 2.01
3099 4386 2.167693 CGGCATGTACTCCCTCTGTAAA 59.832 50.000 0.00 0.00 0.00 2.01
3100 4387 1.754803 CGGCATGTACTCCCTCTGTAA 59.245 52.381 0.00 0.00 0.00 2.41
3101 4388 1.064240 TCGGCATGTACTCCCTCTGTA 60.064 52.381 0.00 0.00 0.00 2.74
3102 4389 0.324368 TCGGCATGTACTCCCTCTGT 60.324 55.000 0.00 0.00 0.00 3.41
3103 4390 0.824109 TTCGGCATGTACTCCCTCTG 59.176 55.000 0.00 0.00 0.00 3.35
3104 4391 1.794714 ATTCGGCATGTACTCCCTCT 58.205 50.000 0.00 0.00 0.00 3.69
3105 4392 2.213499 CAATTCGGCATGTACTCCCTC 58.787 52.381 0.00 0.00 0.00 4.30
3106 4393 1.747206 GCAATTCGGCATGTACTCCCT 60.747 52.381 0.00 0.00 0.00 4.20
3107 4394 0.663153 GCAATTCGGCATGTACTCCC 59.337 55.000 0.00 0.00 0.00 4.30
3108 4395 0.663153 GGCAATTCGGCATGTACTCC 59.337 55.000 0.00 0.00 40.76 3.85
3392 5780 3.525268 ACAACCAAGTCCAAAGCAAAG 57.475 42.857 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.