Multiple sequence alignment - TraesCS4D01G265900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G265900 chr4D 100.000 6846 0 0 570 7415 435968080 435974925 0.000000e+00 12643.0
1 TraesCS4D01G265900 chr4D 100.000 247 0 0 1 247 435967511 435967757 2.440000e-124 457.0
2 TraesCS4D01G265900 chr4D 84.314 102 5 1 4514 4615 435970783 435970873 1.020000e-13 89.8
3 TraesCS4D01G265900 chr4D 84.314 102 5 1 3273 3363 435972024 435972125 1.020000e-13 89.8
4 TraesCS4D01G265900 chr4D 94.000 50 3 0 6526 6575 322221181 322221230 7.980000e-10 76.8
5 TraesCS4D01G265900 chr4D 92.000 50 4 0 6525 6574 139631004 139631053 3.710000e-08 71.3
6 TraesCS4D01G265900 chr4A 97.577 1692 31 8 867 2551 32068074 32066386 0.000000e+00 2889.0
7 TraesCS4D01G265900 chr4A 95.811 1313 49 3 5217 6525 32059228 32057918 0.000000e+00 2115.0
8 TraesCS4D01G265900 chr4A 96.613 1122 27 2 3970 5088 32060350 32059237 0.000000e+00 1851.0
9 TraesCS4D01G265900 chr4A 96.053 836 21 4 2549 3384 32065370 32064547 0.000000e+00 1351.0
10 TraesCS4D01G265900 chr4A 94.388 588 20 5 3385 3971 32064495 32063920 0.000000e+00 891.0
11 TraesCS4D01G265900 chr4A 93.162 117 8 0 5085 5201 691397610 691397726 9.890000e-39 172.0
12 TraesCS4D01G265900 chr4A 83.696 92 11 4 6543 6633 538903346 538903258 4.770000e-12 84.2
13 TraesCS4D01G265900 chr4A 83.000 100 6 1 4516 4615 32064656 32064568 6.170000e-11 80.5
14 TraesCS4D01G265900 chr4B 95.659 1313 51 4 5217 6525 537478665 537479975 0.000000e+00 2104.0
15 TraesCS4D01G265900 chr4B 95.961 1114 26 7 882 1978 537474840 537475951 0.000000e+00 1790.0
16 TraesCS4D01G265900 chr4B 89.360 1297 72 25 1978 3241 537476145 537477408 0.000000e+00 1570.0
17 TraesCS4D01G265900 chr4B 89.371 922 53 28 3231 4149 537477435 537478314 0.000000e+00 1118.0
18 TraesCS4D01G265900 chr4B 78.554 1217 155 57 3820 4999 537476825 537477972 0.000000e+00 704.0
19 TraesCS4D01G265900 chr4B 89.500 200 9 5 4889 5086 537478468 537478657 7.430000e-60 243.0
20 TraesCS4D01G265900 chr4B 91.597 119 10 0 5083 5201 22280273 22280391 1.660000e-36 165.0
21 TraesCS4D01G265900 chr4B 90.400 125 12 0 5077 5201 663766219 663766095 1.660000e-36 165.0
22 TraesCS4D01G265900 chr4B 85.714 70 9 1 6519 6588 632498868 632498800 1.030000e-08 73.1
23 TraesCS4D01G265900 chr4B 97.368 38 1 0 847 884 537472244 537472281 1.730000e-06 65.8
24 TraesCS4D01G265900 chr4B 96.970 33 1 0 7313 7345 489007704 489007672 1.000000e-03 56.5
25 TraesCS4D01G265900 chr1D 96.296 891 16 9 6526 7412 390437783 390436906 0.000000e+00 1447.0
26 TraesCS4D01G265900 chr1D 94.737 247 11 2 1 247 18983892 18984136 4.200000e-102 383.0
27 TraesCS4D01G265900 chr1D 94.937 237 10 2 12 247 247134089 247133854 3.270000e-98 370.0
28 TraesCS4D01G265900 chr1D 90.323 124 12 0 5081 5204 493479308 493479185 5.950000e-36 163.0
29 TraesCS4D01G265900 chr1D 90.164 122 12 0 5081 5202 442906432 442906553 7.700000e-35 159.0
30 TraesCS4D01G265900 chr1D 90.000 120 12 0 5084 5203 18612142 18612261 9.960000e-34 156.0
31 TraesCS4D01G265900 chr1D 89.431 123 13 0 5082 5204 53157000 53156878 9.960000e-34 156.0
32 TraesCS4D01G265900 chr1D 90.598 117 11 0 5085 5201 265677382 265677498 9.960000e-34 156.0
33 TraesCS4D01G265900 chr1D 90.598 117 11 0 5085 5201 453708273 453708157 9.960000e-34 156.0
34 TraesCS4D01G265900 chr1D 87.786 131 12 4 5082 5210 436061389 436061261 4.630000e-32 150.0
35 TraesCS4D01G265900 chr1D 94.915 59 3 0 6527 6585 466009134 466009076 7.920000e-15 93.5
36 TraesCS4D01G265900 chr1D 79.464 112 16 6 6522 6631 437689162 437689056 1.030000e-08 73.1
37 TraesCS4D01G265900 chr1D 91.837 49 4 0 6527 6575 452649800 452649752 1.330000e-07 69.4
38 TraesCS4D01G265900 chr1D 87.719 57 6 1 6519 6574 385554260 385554204 1.730000e-06 65.8
39 TraesCS4D01G265900 chr1D 100.000 32 0 0 6543 6574 143363367 143363398 8.030000e-05 60.2
40 TraesCS4D01G265900 chr7B 89.381 904 47 19 6522 7415 180010317 180011181 0.000000e+00 1092.0
41 TraesCS4D01G265900 chr7B 90.551 127 12 0 5078 5204 383714614 383714740 1.280000e-37 169.0
42 TraesCS4D01G265900 chr6D 90.379 686 43 12 6734 7410 439327766 439327095 0.000000e+00 880.0
43 TraesCS4D01G265900 chr6D 93.952 248 13 2 1 247 42926043 42925797 2.530000e-99 374.0
44 TraesCS4D01G265900 chr6D 90.000 130 11 2 5082 5211 39092681 39092808 4.600000e-37 167.0
45 TraesCS4D01G265900 chr6D 91.525 118 10 0 5085 5202 348647454 348647337 5.950000e-36 163.0
46 TraesCS4D01G265900 chr6D 90.164 122 11 1 5085 5205 305136411 305136532 2.770000e-34 158.0
47 TraesCS4D01G265900 chr6D 88.800 125 14 0 5077 5201 366701098 366701222 3.580000e-33 154.0
48 TraesCS4D01G265900 chr6D 85.417 144 17 3 5085 5227 231695112 231695252 6.000000e-31 147.0
49 TraesCS4D01G265900 chr6D 95.833 48 2 0 6527 6574 61766531 61766578 2.220000e-10 78.7
50 TraesCS4D01G265900 chr6D 95.745 47 2 0 6528 6574 7748165 7748211 7.980000e-10 76.8
51 TraesCS4D01G265900 chr6D 87.302 63 7 1 6525 6586 4798054 4797992 3.710000e-08 71.3
52 TraesCS4D01G265900 chr6D 100.000 28 0 0 3356 3383 191617349 191617376 1.300000e-02 52.8
53 TraesCS4D01G265900 chr6D 100.000 28 0 0 3356 3383 198310849 198310876 1.300000e-02 52.8
54 TraesCS4D01G265900 chr3A 91.404 570 31 12 6856 7415 495555658 495556219 0.000000e+00 765.0
55 TraesCS4D01G265900 chr3A 86.667 300 13 10 6525 6813 495555375 495555658 2.600000e-79 307.0
56 TraesCS4D01G265900 chr7A 87.654 648 29 15 6664 7274 77704768 77704135 0.000000e+00 706.0
57 TraesCS4D01G265900 chr7A 89.352 216 15 5 7202 7415 77704148 77703939 1.590000e-66 265.0
58 TraesCS4D01G265900 chr7A 89.922 129 4 2 6536 6663 77706182 77706062 2.770000e-34 158.0
59 TraesCS4D01G265900 chr7A 81.034 116 18 4 6523 6637 22087865 22087753 1.020000e-13 89.8
60 TraesCS4D01G265900 chr7D 90.927 518 27 12 6909 7415 180841142 180840634 0.000000e+00 678.0
61 TraesCS4D01G265900 chr7D 90.323 403 23 12 6527 6924 180841553 180841162 1.430000e-141 514.0
62 TraesCS4D01G265900 chr7D 91.398 279 11 6 572 845 422340162 422339892 3.270000e-98 370.0
63 TraesCS4D01G265900 chr7D 94.937 237 9 3 12 247 151407307 151407541 1.180000e-97 368.0
64 TraesCS4D01G265900 chr7D 92.308 117 8 1 5085 5201 33478454 33478569 1.660000e-36 165.0
65 TraesCS4D01G265900 chr7D 91.597 119 10 0 5084 5202 48534307 48534425 1.660000e-36 165.0
66 TraesCS4D01G265900 chr7D 91.525 118 10 0 5084 5201 120249167 120249284 5.950000e-36 163.0
67 TraesCS4D01G265900 chr7D 88.372 129 15 0 5085 5213 176565926 176565798 9.960000e-34 156.0
68 TraesCS4D01G265900 chr7D 92.982 57 3 1 6527 6583 558896242 558896187 1.710000e-11 82.4
69 TraesCS4D01G265900 chr7D 100.000 28 0 0 3356 3383 226244789 226244816 1.300000e-02 52.8
70 TraesCS4D01G265900 chr7D 100.000 28 0 0 3356 3383 381183680 381183707 1.300000e-02 52.8
71 TraesCS4D01G265900 chr3B 82.117 548 39 20 6627 7159 534989590 534989087 1.490000e-111 414.0
72 TraesCS4D01G265900 chr3B 84.762 105 14 2 6515 6618 822228552 822228449 3.660000e-18 104.0
73 TraesCS4D01G265900 chr3B 84.762 105 14 2 6515 6618 822319122 822319019 3.660000e-18 104.0
74 TraesCS4D01G265900 chr3B 84.762 105 14 2 6515 6618 825230397 825230500 3.660000e-18 104.0
75 TraesCS4D01G265900 chr5D 93.214 280 11 6 572 844 390365948 390365670 8.960000e-109 405.0
76 TraesCS4D01G265900 chr5D 92.308 286 11 6 572 848 450616064 450615781 5.390000e-106 396.0
77 TraesCS4D01G265900 chr5D 91.228 285 13 8 570 845 22457726 22458007 1.950000e-100 377.0
78 TraesCS4D01G265900 chr5D 95.378 238 9 2 12 247 513910386 513910149 1.950000e-100 377.0
79 TraesCS4D01G265900 chr5D 94.937 237 10 2 12 247 498436302 498436537 3.270000e-98 370.0
80 TraesCS4D01G265900 chr5D 93.173 249 12 5 1 247 564947132 564947377 1.970000e-95 361.0
81 TraesCS4D01G265900 chr5D 88.976 127 13 1 5083 5209 97831723 97831848 9.960000e-34 156.0
82 TraesCS4D01G265900 chr5D 90.909 55 5 0 6535 6589 524488574 524488628 2.870000e-09 75.0
83 TraesCS4D01G265900 chr5D 89.831 59 5 1 6527 6585 545803784 545803727 2.870000e-09 75.0
84 TraesCS4D01G265900 chr5D 93.333 45 1 2 7301 7345 526863233 526863191 1.730000e-06 65.8
85 TraesCS4D01G265900 chr5D 100.000 28 0 0 3356 3383 368761470 368761443 1.300000e-02 52.8
86 TraesCS4D01G265900 chr2D 93.407 273 14 3 574 843 13653751 13653480 1.160000e-107 401.0
87 TraesCS4D01G265900 chr2D 92.500 280 11 6 574 845 36547661 36547938 6.970000e-105 392.0
88 TraesCS4D01G265900 chr2D 91.786 280 13 9 572 845 609662209 609662484 1.510000e-101 381.0
89 TraesCS4D01G265900 chr2D 95.339 236 10 1 12 247 480178857 480178623 2.530000e-99 374.0
90 TraesCS4D01G265900 chr2D 82.581 310 30 16 7114 7415 96619087 96618794 1.240000e-62 252.0
91 TraesCS4D01G265900 chr2D 89.764 127 13 0 5079 5205 501703854 501703980 5.950000e-36 163.0
92 TraesCS4D01G265900 chr2D 87.050 139 17 1 5082 5220 116827425 116827288 9.960000e-34 156.0
93 TraesCS4D01G265900 chr2D 91.525 59 5 0 6527 6585 87946708 87946766 1.710000e-11 82.4
94 TraesCS4D01G265900 chr2D 82.716 81 10 4 6543 6620 646827952 646827873 1.330000e-07 69.4
95 TraesCS4D01G265900 chr2D 82.716 81 10 4 6543 6620 646996234 646996155 1.330000e-07 69.4
96 TraesCS4D01G265900 chr2D 91.304 46 2 1 7313 7356 300891468 300891423 2.230000e-05 62.1
97 TraesCS4D01G265900 chr2D 100.000 28 0 0 3356 3383 408786779 408786752 1.300000e-02 52.8
98 TraesCS4D01G265900 chr3D 92.580 283 12 4 572 845 601085711 601085993 1.500000e-106 398.0
99 TraesCS4D01G265900 chr3D 92.527 281 12 5 573 846 369417927 369417649 1.940000e-105 394.0
100 TraesCS4D01G265900 chr3D 94.958 238 10 1 12 247 178222199 178221962 9.090000e-99 372.0
101 TraesCS4D01G265900 chr3D 100.000 28 0 0 3356 3383 100066275 100066248 1.300000e-02 52.8
102 TraesCS4D01G265900 chr3D 100.000 28 0 0 3356 3383 282365716 282365689 1.300000e-02 52.8
103 TraesCS4D01G265900 chr2B 82.979 235 31 8 7151 7383 543145715 543145488 3.510000e-48 204.0
104 TraesCS4D01G265900 chr2B 92.562 121 9 0 5085 5205 52463334 52463214 2.750000e-39 174.0
105 TraesCS4D01G265900 chr2B 90.551 127 10 1 5083 5209 578045012 578044888 4.600000e-37 167.0
106 TraesCS4D01G265900 chr1B 93.220 118 8 0 5084 5201 448532835 448532952 2.750000e-39 174.0
107 TraesCS4D01G265900 chr2A 92.500 120 9 0 5083 5202 573658425 573658306 9.890000e-39 172.0
108 TraesCS4D01G265900 chr2A 86.869 99 6 7 6532 6625 19309214 19309118 3.660000e-18 104.0
109 TraesCS4D01G265900 chr2A 84.946 93 11 2 6526 6616 19616833 19616742 2.850000e-14 91.6
110 TraesCS4D01G265900 chr6B 92.437 119 9 0 5084 5202 210275489 210275607 3.560000e-38 171.0
111 TraesCS4D01G265900 chr6B 91.736 121 10 0 5084 5204 260542849 260542969 1.280000e-37 169.0
112 TraesCS4D01G265900 chr6B 81.818 88 8 7 6525 6608 644836011 644835928 4.800000e-07 67.6
113 TraesCS4D01G265900 chr5B 90.625 128 8 4 5083 5209 525451720 525451596 4.600000e-37 167.0
114 TraesCS4D01G265900 chr5B 93.182 44 3 0 7300 7343 696574046 696574003 1.730000e-06 65.8
115 TraesCS4D01G265900 chrUn 91.525 118 10 0 5085 5202 22143591 22143708 5.950000e-36 163.0
116 TraesCS4D01G265900 chrUn 89.683 126 12 1 5084 5209 100620762 100620886 7.700000e-35 159.0
117 TraesCS4D01G265900 chrUn 88.281 128 13 2 5083 5209 59911194 59911068 1.290000e-32 152.0
118 TraesCS4D01G265900 chrUn 89.831 118 12 0 5085 5202 87827393 87827510 1.290000e-32 152.0
119 TraesCS4D01G265900 chrUn 89.831 118 12 0 5085 5202 309972438 309972555 1.290000e-32 152.0
120 TraesCS4D01G265900 chrUn 89.167 120 13 0 5084 5203 82049596 82049477 4.630000e-32 150.0
121 TraesCS4D01G265900 chrUn 88.095 126 14 1 5082 5206 88642462 88642587 1.670000e-31 148.0
122 TraesCS4D01G265900 chrUn 88.095 126 14 1 5082 5206 283732553 283732678 1.670000e-31 148.0
123 TraesCS4D01G265900 chrUn 88.889 117 13 0 5085 5201 97740067 97740183 2.160000e-30 145.0
124 TraesCS4D01G265900 chrUn 87.200 125 14 1 5077 5201 39802138 39802260 2.790000e-29 141.0
125 TraesCS4D01G265900 chrUn 88.333 60 7 0 6526 6585 310738421 310738480 1.030000e-08 73.1
126 TraesCS4D01G265900 chrUn 86.441 59 7 1 6527 6585 348377806 348377863 6.210000e-06 63.9
127 TraesCS4D01G265900 chr1A 90.476 126 9 3 5082 5206 86576550 86576673 5.950000e-36 163.0
128 TraesCS4D01G265900 chr1A 90.625 64 5 1 6520 6583 488608426 488608488 4.770000e-12 84.2
129 TraesCS4D01G265900 chr1A 94.000 50 3 0 6526 6575 39675989 39675940 7.980000e-10 76.8
130 TraesCS4D01G265900 chr6A 92.188 64 4 1 6533 6595 445773646 445773709 1.020000e-13 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G265900 chr4D 435967511 435974925 7414 False 6550.000000 12643 100.000000 1 7415 2 chr4D.!!$F3 7414
1 TraesCS4D01G265900 chr4A 32057918 32068074 10156 True 1529.583333 2889 93.907000 867 6525 6 chr4A.!!$R2 5658
2 TraesCS4D01G265900 chr4B 537472244 537479975 7731 False 1084.971429 2104 90.824714 847 6525 7 chr4B.!!$F2 5678
3 TraesCS4D01G265900 chr1D 390436906 390437783 877 True 1447.000000 1447 96.296000 6526 7412 1 chr1D.!!$R4 886
4 TraesCS4D01G265900 chr7B 180010317 180011181 864 False 1092.000000 1092 89.381000 6522 7415 1 chr7B.!!$F1 893
5 TraesCS4D01G265900 chr6D 439327095 439327766 671 True 880.000000 880 90.379000 6734 7410 1 chr6D.!!$R4 676
6 TraesCS4D01G265900 chr3A 495555375 495556219 844 False 536.000000 765 89.035500 6525 7415 2 chr3A.!!$F1 890
7 TraesCS4D01G265900 chr7A 77703939 77706182 2243 True 376.333333 706 88.976000 6536 7415 3 chr7A.!!$R2 879
8 TraesCS4D01G265900 chr7D 180840634 180841553 919 True 596.000000 678 90.625000 6527 7415 2 chr7D.!!$R4 888
9 TraesCS4D01G265900 chr3B 534989087 534989590 503 True 414.000000 414 82.117000 6627 7159 1 chr3B.!!$R1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.034896 AAGCACAACCGTACCTCTGG 59.965 55.000 0.00 0.00 0.00 3.86 F
660 661 0.036671 AAACGCTAAGGAAGACCGGG 60.037 55.000 6.32 0.00 41.83 5.73 F
668 669 0.111832 AGGAAGACCGGGGAAAAACC 59.888 55.000 6.32 0.00 41.83 3.27 F
669 670 0.178984 GGAAGACCGGGGAAAAACCA 60.179 55.000 6.32 0.00 41.20 3.67 F
834 835 0.456312 CGAAGGAGCGCTCGTTAACT 60.456 55.000 36.96 23.16 37.75 2.24 F
1666 4231 0.738975 CCTCGACCTCGACAAGCATA 59.261 55.000 0.00 0.00 44.22 3.14 F
1821 4393 1.340405 ACAAGCTACAGGATGCAAGGG 60.340 52.381 0.00 0.00 42.53 3.95 F
3538 7466 1.019673 CCCATTCAATGCCTGAGTCG 58.980 55.000 0.00 0.00 34.81 4.18 F
4245 11826 0.778815 GCTGAGTTTATCCGCGATCG 59.221 55.000 11.69 11.69 0.00 3.69 F
5103 12685 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1967 4549 2.026262 CCATACCTGGTACCAGCTTTGT 60.026 50.000 32.98 26.19 42.35 2.83 R
2169 4950 0.963962 CAAACAGCTCCAGGTTGCAT 59.036 50.000 9.30 0.00 0.00 3.96 R
2260 5042 6.568081 GCAAATAGATCATGATGGTGAAGAGC 60.568 42.308 14.30 4.08 0.00 4.09 R
2676 6504 4.604784 AGGCTACAGTTAGGACTTAGGA 57.395 45.455 0.00 0.00 32.54 2.94 R
2836 6665 1.490490 CTAAGAGCCCTTATGCACCCA 59.510 52.381 0.00 0.00 34.62 4.51 R
3538 7466 0.603065 GAACAAAGCCATGGGGTCAC 59.397 55.000 15.13 0.00 36.17 3.67 R
3719 7647 6.058183 CCCAACTAAGCACATAGATTTAGCT 58.942 40.000 0.00 0.00 37.08 3.32 R
4656 12237 0.035317 GGTGTCATCACAGCCTCACA 59.965 55.000 0.00 0.00 44.03 3.58 R
5183 12765 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46 R
6434 14024 0.037975 TCTCCGTAGAAACCAACGCC 60.038 55.000 0.00 0.00 37.78 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.691342 CCCGTGCCTCTCGTGGAA 61.691 66.667 0.00 0.00 0.00 3.53
28 29 2.125912 CCGTGCCTCTCGTGGAAG 60.126 66.667 0.00 0.00 0.00 3.46
29 30 2.811317 CGTGCCTCTCGTGGAAGC 60.811 66.667 0.00 0.00 32.35 3.86
30 31 2.343758 GTGCCTCTCGTGGAAGCA 59.656 61.111 0.00 1.60 38.87 3.91
31 32 1.301716 GTGCCTCTCGTGGAAGCAA 60.302 57.895 6.14 0.00 42.24 3.91
32 33 0.884704 GTGCCTCTCGTGGAAGCAAA 60.885 55.000 6.14 0.00 42.24 3.68
33 34 0.179032 TGCCTCTCGTGGAAGCAAAA 60.179 50.000 2.93 0.00 38.32 2.44
34 35 0.238553 GCCTCTCGTGGAAGCAAAAC 59.761 55.000 0.00 0.00 32.03 2.43
35 36 1.884235 CCTCTCGTGGAAGCAAAACT 58.116 50.000 0.00 0.00 0.00 2.66
36 37 2.870435 GCCTCTCGTGGAAGCAAAACTA 60.870 50.000 0.00 0.00 32.03 2.24
37 38 3.600388 CCTCTCGTGGAAGCAAAACTAT 58.400 45.455 0.00 0.00 0.00 2.12
38 39 3.372206 CCTCTCGTGGAAGCAAAACTATG 59.628 47.826 0.00 0.00 0.00 2.23
39 40 3.334691 TCTCGTGGAAGCAAAACTATGG 58.665 45.455 0.00 0.00 0.00 2.74
40 41 1.810151 TCGTGGAAGCAAAACTATGGC 59.190 47.619 0.00 0.00 0.00 4.40
41 42 1.812571 CGTGGAAGCAAAACTATGGCT 59.187 47.619 0.00 0.00 40.14 4.75
42 43 2.159517 CGTGGAAGCAAAACTATGGCTC 60.160 50.000 0.00 0.00 36.76 4.70
43 44 3.084786 GTGGAAGCAAAACTATGGCTCT 58.915 45.455 0.00 0.00 36.76 4.09
44 45 3.127721 GTGGAAGCAAAACTATGGCTCTC 59.872 47.826 0.00 0.00 36.76 3.20
45 46 2.352960 GGAAGCAAAACTATGGCTCTCG 59.647 50.000 0.00 0.00 36.76 4.04
46 47 2.770164 AGCAAAACTATGGCTCTCGT 57.230 45.000 0.00 0.00 30.74 4.18
47 48 2.350522 AGCAAAACTATGGCTCTCGTG 58.649 47.619 0.00 0.00 30.74 4.35
48 49 1.398390 GCAAAACTATGGCTCTCGTGG 59.602 52.381 0.00 0.00 0.00 4.94
49 50 2.935238 GCAAAACTATGGCTCTCGTGGA 60.935 50.000 0.00 0.00 0.00 4.02
50 51 3.334691 CAAAACTATGGCTCTCGTGGAA 58.665 45.455 0.00 0.00 0.00 3.53
51 52 3.695830 AAACTATGGCTCTCGTGGAAA 57.304 42.857 0.00 0.00 0.00 3.13
52 53 2.969628 ACTATGGCTCTCGTGGAAAG 57.030 50.000 0.00 0.00 0.00 2.62
53 54 2.457598 ACTATGGCTCTCGTGGAAAGA 58.542 47.619 0.00 0.00 0.00 2.52
54 55 2.832129 ACTATGGCTCTCGTGGAAAGAA 59.168 45.455 0.00 0.00 0.00 2.52
55 56 2.859165 ATGGCTCTCGTGGAAAGAAA 57.141 45.000 0.00 0.00 0.00 2.52
56 57 2.631160 TGGCTCTCGTGGAAAGAAAA 57.369 45.000 0.00 0.00 0.00 2.29
57 58 2.925724 TGGCTCTCGTGGAAAGAAAAA 58.074 42.857 0.00 0.00 0.00 1.94
95 96 1.905637 TTTCCCTTTCCGAAAGAGGC 58.094 50.000 20.43 0.00 41.02 4.70
96 97 0.768622 TTCCCTTTCCGAAAGAGGCA 59.231 50.000 20.43 8.95 41.02 4.75
97 98 0.036306 TCCCTTTCCGAAAGAGGCAC 59.964 55.000 20.43 0.00 41.02 5.01
98 99 1.298859 CCCTTTCCGAAAGAGGCACG 61.299 60.000 20.43 4.41 41.02 5.34
99 100 1.497722 CTTTCCGAAAGAGGCACGC 59.502 57.895 14.72 0.00 41.02 5.34
100 101 1.912371 CTTTCCGAAAGAGGCACGCC 61.912 60.000 14.72 0.00 41.02 5.68
101 102 3.894547 TTCCGAAAGAGGCACGCCC 62.895 63.158 3.95 0.00 36.58 6.13
130 131 2.908817 CGAAAGCACAACCGTACCT 58.091 52.632 0.00 0.00 0.00 3.08
131 132 0.788391 CGAAAGCACAACCGTACCTC 59.212 55.000 0.00 0.00 0.00 3.85
132 133 1.604693 CGAAAGCACAACCGTACCTCT 60.605 52.381 0.00 0.00 0.00 3.69
133 134 1.798813 GAAAGCACAACCGTACCTCTG 59.201 52.381 0.00 0.00 0.00 3.35
134 135 0.034896 AAGCACAACCGTACCTCTGG 59.965 55.000 0.00 0.00 0.00 3.86
135 136 2.033194 GCACAACCGTACCTCTGGC 61.033 63.158 0.00 0.00 0.00 4.85
136 137 1.369692 CACAACCGTACCTCTGGCA 59.630 57.895 0.00 0.00 0.00 4.92
137 138 0.250124 CACAACCGTACCTCTGGCAA 60.250 55.000 0.00 0.00 0.00 4.52
138 139 0.470766 ACAACCGTACCTCTGGCAAA 59.529 50.000 0.00 0.00 0.00 3.68
139 140 1.134037 ACAACCGTACCTCTGGCAAAA 60.134 47.619 0.00 0.00 0.00 2.44
140 141 1.535462 CAACCGTACCTCTGGCAAAAG 59.465 52.381 0.00 0.00 0.00 2.27
141 142 0.605589 ACCGTACCTCTGGCAAAAGC 60.606 55.000 0.00 0.00 0.00 3.51
142 143 0.605319 CCGTACCTCTGGCAAAAGCA 60.605 55.000 0.00 0.00 0.00 3.91
143 144 1.234821 CGTACCTCTGGCAAAAGCAA 58.765 50.000 0.00 0.00 0.00 3.91
144 145 1.606668 CGTACCTCTGGCAAAAGCAAA 59.393 47.619 0.00 0.00 0.00 3.68
145 146 2.034053 CGTACCTCTGGCAAAAGCAAAA 59.966 45.455 0.00 0.00 0.00 2.44
146 147 2.602257 ACCTCTGGCAAAAGCAAAAC 57.398 45.000 0.00 0.00 0.00 2.43
147 148 1.138859 ACCTCTGGCAAAAGCAAAACC 59.861 47.619 0.00 0.00 0.00 3.27
148 149 1.490621 CTCTGGCAAAAGCAAAACCG 58.509 50.000 0.00 0.00 0.00 4.44
149 150 0.820871 TCTGGCAAAAGCAAAACCGT 59.179 45.000 0.00 0.00 0.00 4.83
150 151 0.929615 CTGGCAAAAGCAAAACCGTG 59.070 50.000 0.00 0.00 0.00 4.94
151 152 0.532573 TGGCAAAAGCAAAACCGTGA 59.467 45.000 0.00 0.00 0.00 4.35
152 153 0.927537 GGCAAAAGCAAAACCGTGAC 59.072 50.000 0.00 0.00 0.00 3.67
153 154 1.470805 GGCAAAAGCAAAACCGTGACT 60.471 47.619 0.00 0.00 0.00 3.41
154 155 1.852280 GCAAAAGCAAAACCGTGACTC 59.148 47.619 0.00 0.00 0.00 3.36
155 156 2.479560 GCAAAAGCAAAACCGTGACTCT 60.480 45.455 0.00 0.00 0.00 3.24
156 157 3.363178 CAAAAGCAAAACCGTGACTCTC 58.637 45.455 0.00 0.00 0.00 3.20
157 158 1.217882 AAGCAAAACCGTGACTCTCG 58.782 50.000 0.00 0.00 0.00 4.04
158 159 1.204312 GCAAAACCGTGACTCTCGC 59.796 57.895 0.00 0.00 0.00 5.03
168 169 3.854286 GTGACTCTCGCGAAAGAAAAA 57.146 42.857 17.91 0.00 0.00 1.94
225 226 4.717629 CGGCCGTGACTCTCGCAA 62.718 66.667 19.50 0.00 0.00 4.85
226 227 2.357034 GGCCGTGACTCTCGCAAA 60.357 61.111 0.00 0.00 0.00 3.68
227 228 1.959226 GGCCGTGACTCTCGCAAAA 60.959 57.895 0.00 0.00 0.00 2.44
228 229 1.493311 GCCGTGACTCTCGCAAAAG 59.507 57.895 0.00 0.00 0.00 2.27
229 230 1.493311 CCGTGACTCTCGCAAAAGC 59.507 57.895 0.00 0.00 0.00 3.51
230 231 1.221466 CCGTGACTCTCGCAAAAGCA 61.221 55.000 0.00 0.00 0.00 3.91
231 232 0.111089 CGTGACTCTCGCAAAAGCAC 60.111 55.000 0.00 0.00 0.00 4.40
232 233 0.937304 GTGACTCTCGCAAAAGCACA 59.063 50.000 0.00 0.00 0.00 4.57
233 234 1.330521 GTGACTCTCGCAAAAGCACAA 59.669 47.619 0.00 0.00 0.00 3.33
234 235 1.330521 TGACTCTCGCAAAAGCACAAC 59.669 47.619 0.00 0.00 0.00 3.32
235 236 0.663153 ACTCTCGCAAAAGCACAACC 59.337 50.000 0.00 0.00 0.00 3.77
236 237 0.384725 CTCTCGCAAAAGCACAACCG 60.385 55.000 0.00 0.00 0.00 4.44
237 238 1.092921 TCTCGCAAAAGCACAACCGT 61.093 50.000 0.00 0.00 0.00 4.83
238 239 0.929824 CTCGCAAAAGCACAACCGTG 60.930 55.000 0.00 0.00 46.56 4.94
246 247 3.414700 CACAACCGTGCCTCTCGC 61.415 66.667 0.00 0.00 36.06 5.03
653 654 4.879104 TTTTTGTCGAAACGCTAAGGAA 57.121 36.364 0.00 0.00 0.00 3.36
654 655 4.461992 TTTTGTCGAAACGCTAAGGAAG 57.538 40.909 0.00 0.00 0.00 3.46
655 656 3.374220 TTGTCGAAACGCTAAGGAAGA 57.626 42.857 0.00 0.00 0.00 2.87
656 657 2.669364 TGTCGAAACGCTAAGGAAGAC 58.331 47.619 0.00 0.00 0.00 3.01
657 658 1.991264 GTCGAAACGCTAAGGAAGACC 59.009 52.381 0.00 0.00 0.00 3.85
658 659 0.989890 CGAAACGCTAAGGAAGACCG 59.010 55.000 0.00 0.00 41.83 4.79
659 660 1.356938 GAAACGCTAAGGAAGACCGG 58.643 55.000 0.00 0.00 41.83 5.28
660 661 0.036671 AAACGCTAAGGAAGACCGGG 60.037 55.000 6.32 0.00 41.83 5.73
661 662 1.896122 AACGCTAAGGAAGACCGGGG 61.896 60.000 6.32 0.00 41.83 5.73
662 663 2.056223 CGCTAAGGAAGACCGGGGA 61.056 63.158 6.32 0.00 41.83 4.81
663 664 1.610554 CGCTAAGGAAGACCGGGGAA 61.611 60.000 6.32 0.00 41.83 3.97
664 665 0.616891 GCTAAGGAAGACCGGGGAAA 59.383 55.000 6.32 0.00 41.83 3.13
665 666 1.003928 GCTAAGGAAGACCGGGGAAAA 59.996 52.381 6.32 0.00 41.83 2.29
666 667 2.553685 GCTAAGGAAGACCGGGGAAAAA 60.554 50.000 6.32 0.00 41.83 1.94
667 668 1.991121 AAGGAAGACCGGGGAAAAAC 58.009 50.000 6.32 0.00 41.83 2.43
668 669 0.111832 AGGAAGACCGGGGAAAAACC 59.888 55.000 6.32 0.00 41.83 3.27
669 670 0.178984 GGAAGACCGGGGAAAAACCA 60.179 55.000 6.32 0.00 41.20 3.67
670 671 1.694844 GAAGACCGGGGAAAAACCAA 58.305 50.000 6.32 0.00 41.20 3.67
671 672 2.033372 GAAGACCGGGGAAAAACCAAA 58.967 47.619 6.32 0.00 41.20 3.28
672 673 2.162264 AGACCGGGGAAAAACCAAAA 57.838 45.000 6.32 0.00 41.20 2.44
673 674 1.758280 AGACCGGGGAAAAACCAAAAC 59.242 47.619 6.32 0.00 41.20 2.43
674 675 0.460722 ACCGGGGAAAAACCAAAACG 59.539 50.000 6.32 0.00 41.20 3.60
675 676 0.460722 CCGGGGAAAAACCAAAACGT 59.539 50.000 0.00 0.00 41.20 3.99
676 677 1.536496 CCGGGGAAAAACCAAAACGTC 60.536 52.381 0.00 0.00 41.20 4.34
677 678 1.842720 GGGGAAAAACCAAAACGTCG 58.157 50.000 0.00 0.00 41.20 5.12
678 679 1.404748 GGGGAAAAACCAAAACGTCGA 59.595 47.619 0.00 0.00 41.20 4.20
679 680 2.159268 GGGGAAAAACCAAAACGTCGAA 60.159 45.455 0.00 0.00 41.20 3.71
680 681 3.509740 GGGAAAAACCAAAACGTCGAAA 58.490 40.909 0.00 0.00 41.20 3.46
681 682 3.925299 GGGAAAAACCAAAACGTCGAAAA 59.075 39.130 0.00 0.00 41.20 2.29
682 683 4.388165 GGGAAAAACCAAAACGTCGAAAAA 59.612 37.500 0.00 0.00 41.20 1.94
714 715 6.477669 AAAAACCGTTTAAAAAGCCGAAAA 57.522 29.167 0.00 0.00 0.00 2.29
715 716 5.453281 AAACCGTTTAAAAAGCCGAAAAC 57.547 34.783 0.00 0.00 0.00 2.43
717 718 3.130797 CGTTTAAAAAGCCGAAAACGC 57.869 42.857 6.30 0.00 44.94 4.84
718 719 2.406245 CGTTTAAAAAGCCGAAAACGCG 60.406 45.455 3.53 3.53 44.94 6.01
719 720 2.471862 TTAAAAAGCCGAAAACGCGT 57.528 40.000 5.58 5.58 0.00 6.01
720 721 1.744374 TAAAAAGCCGAAAACGCGTG 58.256 45.000 14.98 0.00 0.00 5.34
721 722 1.476235 AAAAAGCCGAAAACGCGTGC 61.476 50.000 14.98 12.13 0.00 5.34
722 723 4.659874 AAGCCGAAAACGCGTGCG 62.660 61.111 14.98 17.33 46.03 5.34
725 726 4.003011 CCGAAAACGCGTGCGGAA 62.003 61.111 31.93 0.00 46.29 4.30
726 727 2.052941 CGAAAACGCGTGCGGAAA 60.053 55.556 14.98 0.00 44.69 3.13
727 728 1.651730 CGAAAACGCGTGCGGAAAA 60.652 52.632 14.98 0.00 44.69 2.29
728 729 1.194896 CGAAAACGCGTGCGGAAAAA 61.195 50.000 14.98 0.00 44.69 1.94
752 753 7.520119 AAAAACAAAATCTGAAGGAAACGTC 57.480 32.000 0.00 0.00 39.49 4.34
753 754 4.830826 ACAAAATCTGAAGGAAACGTCC 57.169 40.909 0.00 0.00 45.35 4.79
761 762 3.479269 GGAAACGTCCAGAGCGCG 61.479 66.667 0.00 0.00 44.26 6.86
762 763 2.430244 GAAACGTCCAGAGCGCGA 60.430 61.111 12.10 0.00 0.00 5.87
763 764 2.717809 GAAACGTCCAGAGCGCGAC 61.718 63.158 12.10 2.22 0.00 5.19
764 765 3.493830 AAACGTCCAGAGCGCGACA 62.494 57.895 12.10 0.00 0.00 4.35
765 766 4.702081 ACGTCCAGAGCGCGACAC 62.702 66.667 12.10 0.00 0.00 3.67
767 768 4.702081 GTCCAGAGCGCGACACGT 62.702 66.667 12.10 0.00 46.11 4.49
768 769 4.700365 TCCAGAGCGCGACACGTG 62.700 66.667 15.48 15.48 46.11 4.49
778 779 2.742372 GACACGTGGCGAATGGCT 60.742 61.111 21.57 0.00 42.94 4.75
779 780 3.027170 GACACGTGGCGAATGGCTG 62.027 63.158 21.57 0.00 42.94 4.85
780 781 2.741985 CACGTGGCGAATGGCTGA 60.742 61.111 7.95 0.00 42.94 4.26
781 782 2.434884 ACGTGGCGAATGGCTGAG 60.435 61.111 0.00 0.00 42.94 3.35
782 783 2.125552 CGTGGCGAATGGCTGAGA 60.126 61.111 0.00 0.00 42.94 3.27
783 784 2.169789 CGTGGCGAATGGCTGAGAG 61.170 63.158 0.00 0.00 42.94 3.20
784 785 2.124983 TGGCGAATGGCTGAGAGC 60.125 61.111 0.00 0.00 42.94 4.09
785 786 3.267860 GGCGAATGGCTGAGAGCG 61.268 66.667 0.00 0.00 43.62 5.03
786 787 3.934684 GCGAATGGCTGAGAGCGC 61.935 66.667 0.00 0.00 43.62 5.92
787 788 3.624300 CGAATGGCTGAGAGCGCG 61.624 66.667 0.00 0.00 43.62 6.86
788 789 2.202797 GAATGGCTGAGAGCGCGA 60.203 61.111 12.10 0.00 43.62 5.87
789 790 1.811266 GAATGGCTGAGAGCGCGAA 60.811 57.895 12.10 0.00 43.62 4.70
790 791 1.760268 GAATGGCTGAGAGCGCGAAG 61.760 60.000 12.10 0.00 43.62 3.79
791 792 2.513026 AATGGCTGAGAGCGCGAAGT 62.513 55.000 12.10 0.00 43.62 3.01
792 793 3.184683 GGCTGAGAGCGCGAAGTG 61.185 66.667 12.10 0.00 43.62 3.16
793 794 3.184683 GCTGAGAGCGCGAAGTGG 61.185 66.667 12.10 0.00 39.19 4.00
794 795 3.184683 CTGAGAGCGCGAAGTGGC 61.185 66.667 12.10 0.00 39.19 5.01
803 804 2.507102 CGAAGTGGCGCTGATCGT 60.507 61.111 7.64 0.00 41.07 3.73
804 805 2.094659 CGAAGTGGCGCTGATCGTT 61.095 57.895 7.64 0.00 41.07 3.85
805 806 1.421485 GAAGTGGCGCTGATCGTTG 59.579 57.895 7.64 0.00 41.07 4.10
806 807 2.568935 GAAGTGGCGCTGATCGTTGC 62.569 60.000 7.64 0.00 41.07 4.17
812 813 2.510238 GCTGATCGTTGCGAGGCT 60.510 61.111 0.00 0.00 39.91 4.58
813 814 2.520904 GCTGATCGTTGCGAGGCTC 61.521 63.158 3.87 3.87 39.91 4.70
814 815 1.880340 CTGATCGTTGCGAGGCTCC 60.880 63.158 9.32 2.37 39.91 4.70
815 816 2.586357 GATCGTTGCGAGGCTCCC 60.586 66.667 9.32 0.00 39.91 4.30
816 817 4.514577 ATCGTTGCGAGGCTCCCG 62.515 66.667 9.32 6.56 39.91 5.14
818 819 4.735132 CGTTGCGAGGCTCCCGAA 62.735 66.667 9.32 0.00 0.00 4.30
819 820 2.815647 GTTGCGAGGCTCCCGAAG 60.816 66.667 9.32 0.00 0.00 3.79
832 833 4.470876 CGAAGGAGCGCTCGTTAA 57.529 55.556 36.96 0.00 37.75 2.01
833 834 1.989163 CGAAGGAGCGCTCGTTAAC 59.011 57.895 36.96 26.47 37.75 2.01
834 835 0.456312 CGAAGGAGCGCTCGTTAACT 60.456 55.000 36.96 23.16 37.75 2.24
835 836 1.202110 CGAAGGAGCGCTCGTTAACTA 60.202 52.381 36.96 0.00 37.75 2.24
836 837 2.452105 GAAGGAGCGCTCGTTAACTAG 58.548 52.381 36.96 3.24 37.75 2.57
837 838 1.461559 AGGAGCGCTCGTTAACTAGT 58.538 50.000 29.81 3.95 0.00 2.57
838 839 1.817447 AGGAGCGCTCGTTAACTAGTT 59.183 47.619 29.81 13.68 0.00 2.24
839 840 1.918609 GGAGCGCTCGTTAACTAGTTG 59.081 52.381 29.81 1.62 0.00 3.16
840 841 1.320852 GAGCGCTCGTTAACTAGTTGC 59.679 52.381 23.61 11.18 0.00 4.17
841 842 1.067776 AGCGCTCGTTAACTAGTTGCT 60.068 47.619 18.56 17.34 0.00 3.91
842 843 1.320852 GCGCTCGTTAACTAGTTGCTC 59.679 52.381 18.56 3.86 0.00 4.26
843 844 1.918609 CGCTCGTTAACTAGTTGCTCC 59.081 52.381 18.56 2.45 0.00 4.70
844 845 2.269172 GCTCGTTAACTAGTTGCTCCC 58.731 52.381 18.56 0.76 0.00 4.30
845 846 2.353406 GCTCGTTAACTAGTTGCTCCCA 60.353 50.000 18.56 0.00 0.00 4.37
939 3502 1.846712 GCCTGCTTCTTCCACCTCCT 61.847 60.000 0.00 0.00 0.00 3.69
958 3523 2.412112 CCACCGGCTAGCGTAGAC 59.588 66.667 9.00 0.00 0.00 2.59
1537 4102 1.737029 CGATCGCCTTTCTGCTTCTCA 60.737 52.381 0.26 0.00 0.00 3.27
1666 4231 0.738975 CCTCGACCTCGACAAGCATA 59.261 55.000 0.00 0.00 44.22 3.14
1678 4243 4.647853 TCGACAAGCATATACCAGGTAAGT 59.352 41.667 2.53 0.00 0.00 2.24
1695 4260 3.695830 AAGTCACATTTTCCTCGCCTA 57.304 42.857 0.00 0.00 0.00 3.93
1696 4261 3.252974 AGTCACATTTTCCTCGCCTAG 57.747 47.619 0.00 0.00 0.00 3.02
1821 4393 1.340405 ACAAGCTACAGGATGCAAGGG 60.340 52.381 0.00 0.00 42.53 3.95
1967 4549 9.733556 TTAGTCCATTGAAGCTAGTTTTATTGA 57.266 29.630 7.32 0.00 0.00 2.57
1980 4756 6.327279 AGTTTTATTGACAAAGCTGGTACC 57.673 37.500 4.43 4.43 29.11 3.34
2081 4857 5.491070 CAGGAATCCAACACTCTGTTATCA 58.509 41.667 0.61 0.00 38.77 2.15
2199 4980 4.018490 TGGAGCTGTTTGTGAATATGCAT 58.982 39.130 3.79 3.79 0.00 3.96
2452 5236 3.025978 TGCCCTTGCTCCTTAAATCATG 58.974 45.455 0.00 0.00 38.71 3.07
2492 5276 7.907214 ATTTCTTTTATTCTCACGCTGTAGT 57.093 32.000 0.00 0.00 0.00 2.73
2676 6504 5.877564 GCTATTTACTTTCTGCAAGGTCTCT 59.122 40.000 0.00 0.00 36.72 3.10
2677 6505 6.036626 GCTATTTACTTTCTGCAAGGTCTCTC 59.963 42.308 0.00 0.00 36.72 3.20
2678 6506 2.849294 ACTTTCTGCAAGGTCTCTCC 57.151 50.000 0.00 0.00 36.72 3.71
2736 6564 8.581263 GCATATGAAATATTTTATGCTTCTGCG 58.419 33.333 24.78 6.54 42.20 5.18
2836 6665 6.015180 TGAGCTTCAACTCCAAAATATTGCTT 60.015 34.615 0.00 0.00 35.72 3.91
2995 6825 9.149323 GCACTTCGCTATGAAACAAGTTCAGTA 62.149 40.741 0.00 0.00 43.07 2.74
3125 6955 8.988064 TTTGAGTCTATTAACTAGTGAGCTTG 57.012 34.615 0.00 0.00 0.00 4.01
3198 7029 5.190132 TCCGAGAAACCCCAAATGATAAGTA 59.810 40.000 0.00 0.00 0.00 2.24
3403 7329 6.636705 AGTGCGATGGAATAAACACTAACTA 58.363 36.000 0.00 0.00 33.62 2.24
3404 7330 7.101054 AGTGCGATGGAATAAACACTAACTAA 58.899 34.615 0.00 0.00 33.62 2.24
3538 7466 1.019673 CCCATTCAATGCCTGAGTCG 58.980 55.000 0.00 0.00 34.81 4.18
3719 7647 9.936759 TGTATAATCATGTTAACACTTCTGTGA 57.063 29.630 11.22 9.99 46.55 3.58
3803 7731 2.623418 TTCTCCCTAAGGCACTCTGA 57.377 50.000 0.00 0.00 38.49 3.27
3899 7827 7.212274 AGGTATATGAAAATTTGAATGCTGCC 58.788 34.615 0.00 0.00 0.00 4.85
4069 11569 8.489676 TGGCATTGTGGTGGATTATAATAATT 57.510 30.769 0.00 0.00 0.00 1.40
4185 11760 8.673626 AAAATAAGTTCAGCATAACACGATTG 57.326 30.769 0.00 0.00 0.00 2.67
4245 11826 0.778815 GCTGAGTTTATCCGCGATCG 59.221 55.000 11.69 11.69 0.00 3.69
4274 11855 5.642491 GGACTTGTCCAATAACCTCACTTAC 59.358 44.000 14.34 0.00 0.00 2.34
4320 11901 9.218440 GAGTCTAGTTACTAGTTGTAAGTGAGT 57.782 37.037 17.69 11.05 42.77 3.41
4366 11947 5.393787 GGGTCGAAGGGATTAAATTTGAACC 60.394 44.000 0.00 0.38 37.11 3.62
4374 11955 7.320399 AGGGATTAAATTTGAACCGTTCATTC 58.680 34.615 14.64 0.00 39.84 2.67
4375 11956 7.178451 AGGGATTAAATTTGAACCGTTCATTCT 59.822 33.333 14.64 3.45 39.84 2.40
4656 12237 2.833943 TGTAGACTGCATCATGTGACCT 59.166 45.455 0.00 0.00 0.00 3.85
4657 12238 2.398252 AGACTGCATCATGTGACCTG 57.602 50.000 0.00 0.00 0.00 4.00
4658 12239 1.627329 AGACTGCATCATGTGACCTGT 59.373 47.619 0.00 0.00 0.00 4.00
4659 12240 1.736126 GACTGCATCATGTGACCTGTG 59.264 52.381 0.00 0.00 0.00 3.66
4660 12241 1.348696 ACTGCATCATGTGACCTGTGA 59.651 47.619 0.00 0.00 0.00 3.58
4661 12242 2.007608 CTGCATCATGTGACCTGTGAG 58.992 52.381 0.00 0.00 0.00 3.51
4662 12243 1.339342 TGCATCATGTGACCTGTGAGG 60.339 52.381 0.00 0.00 42.49 3.86
4663 12244 1.376543 CATCATGTGACCTGTGAGGC 58.623 55.000 0.00 0.00 39.63 4.70
4717 12298 7.879677 CCAAGACTGATTGGCATATAGTGAATA 59.120 37.037 3.26 0.00 43.12 1.75
4735 12316 4.098349 TGAATACTGCAATTGCTCCCATTC 59.902 41.667 29.37 26.41 42.66 2.67
4848 12429 7.276218 TGAGAATCTTTTCACTTTTGCTTTGTG 59.724 33.333 0.00 0.00 34.08 3.33
5014 12596 4.153117 CACTTGGTGCTGTTCTGATTCTAC 59.847 45.833 0.00 0.00 0.00 2.59
5088 12670 5.661759 TCCCTTTTCTCCCTAGATTGTACTC 59.338 44.000 0.00 0.00 0.00 2.59
5089 12671 5.163290 CCCTTTTCTCCCTAGATTGTACTCC 60.163 48.000 0.00 0.00 0.00 3.85
5090 12672 5.163290 CCTTTTCTCCCTAGATTGTACTCCC 60.163 48.000 0.00 0.00 0.00 4.30
5092 12674 4.456662 TCTCCCTAGATTGTACTCCCTC 57.543 50.000 0.00 0.00 0.00 4.30
5093 12675 3.140519 TCTCCCTAGATTGTACTCCCTCC 59.859 52.174 0.00 0.00 0.00 4.30
5094 12676 2.158505 TCCCTAGATTGTACTCCCTCCG 60.159 54.545 0.00 0.00 0.00 4.63
5095 12677 2.424523 CCCTAGATTGTACTCCCTCCGT 60.425 54.545 0.00 0.00 0.00 4.69
5096 12678 2.885894 CCTAGATTGTACTCCCTCCGTC 59.114 54.545 0.00 0.00 0.00 4.79
5097 12679 1.777941 AGATTGTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
5098 12680 0.384669 GATTGTACTCCCTCCGTCCG 59.615 60.000 0.00 0.00 0.00 4.79
5099 12681 1.041447 ATTGTACTCCCTCCGTCCGG 61.041 60.000 0.00 0.00 0.00 5.14
5100 12682 2.141011 TTGTACTCCCTCCGTCCGGA 62.141 60.000 0.00 0.00 42.90 5.14
5101 12683 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
5102 12684 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
5103 12685 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
5104 12686 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
5105 12687 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
5106 12688 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
5107 12689 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
5108 12690 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
5109 12691 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
5110 12692 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
5111 12693 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
5112 12694 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
5113 12695 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
5114 12696 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
5115 12697 2.449464 TCCGGAAATACTTGTCGGAGA 58.551 47.619 0.00 0.00 43.84 3.71
5116 12698 2.827322 TCCGGAAATACTTGTCGGAGAA 59.173 45.455 0.00 0.00 43.84 2.87
5117 12699 3.258872 TCCGGAAATACTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
5118 12700 4.081309 TCCGGAAATACTTGTCGGAGAAAT 60.081 41.667 0.00 0.00 43.84 2.17
5119 12701 4.034048 CCGGAAATACTTGTCGGAGAAATG 59.966 45.833 0.00 0.00 42.94 2.32
5120 12702 4.034048 CGGAAATACTTGTCGGAGAAATGG 59.966 45.833 0.00 0.00 39.69 3.16
5121 12703 5.183228 GGAAATACTTGTCGGAGAAATGGA 58.817 41.667 0.00 0.00 39.69 3.41
5122 12704 5.823045 GGAAATACTTGTCGGAGAAATGGAT 59.177 40.000 0.00 0.00 39.69 3.41
5123 12705 6.990349 GGAAATACTTGTCGGAGAAATGGATA 59.010 38.462 0.00 0.00 39.69 2.59
5124 12706 7.497909 GGAAATACTTGTCGGAGAAATGGATAA 59.502 37.037 0.00 0.00 39.69 1.75
5125 12707 8.801882 AAATACTTGTCGGAGAAATGGATAAA 57.198 30.769 0.00 0.00 39.69 1.40
5126 12708 8.801882 AATACTTGTCGGAGAAATGGATAAAA 57.198 30.769 0.00 0.00 39.69 1.52
5127 12709 8.801882 ATACTTGTCGGAGAAATGGATAAAAA 57.198 30.769 0.00 0.00 39.69 1.94
5128 12710 7.703058 ACTTGTCGGAGAAATGGATAAAAAT 57.297 32.000 0.00 0.00 39.69 1.82
5129 12711 7.538575 ACTTGTCGGAGAAATGGATAAAAATG 58.461 34.615 0.00 0.00 39.69 2.32
5130 12712 6.449635 TGTCGGAGAAATGGATAAAAATGG 57.550 37.500 0.00 0.00 39.69 3.16
5131 12713 6.184068 TGTCGGAGAAATGGATAAAAATGGA 58.816 36.000 0.00 0.00 39.69 3.41
5132 12714 6.833416 TGTCGGAGAAATGGATAAAAATGGAT 59.167 34.615 0.00 0.00 39.69 3.41
5133 12715 7.141363 GTCGGAGAAATGGATAAAAATGGATG 58.859 38.462 0.00 0.00 39.69 3.51
5134 12716 6.833416 TCGGAGAAATGGATAAAAATGGATGT 59.167 34.615 0.00 0.00 0.00 3.06
5135 12717 7.996066 TCGGAGAAATGGATAAAAATGGATGTA 59.004 33.333 0.00 0.00 0.00 2.29
5136 12718 8.796475 CGGAGAAATGGATAAAAATGGATGTAT 58.204 33.333 0.00 0.00 0.00 2.29
5144 12726 9.913310 TGGATAAAAATGGATGTATCTACAACA 57.087 29.630 0.00 0.00 39.99 3.33
5152 12734 9.679661 AATGGATGTATCTACAACACAAATACA 57.320 29.630 0.00 0.00 39.99 2.29
5153 12735 9.851686 ATGGATGTATCTACAACACAAATACAT 57.148 29.630 6.12 6.12 42.96 2.29
5167 12749 9.832445 AACACAAATACATCTAGATAAATCCGT 57.168 29.630 4.54 0.62 0.00 4.69
5168 12750 9.832445 ACACAAATACATCTAGATAAATCCGTT 57.168 29.630 4.54 0.00 0.00 4.44
5174 12756 9.698309 ATACATCTAGATAAATCCGTTTCTGTG 57.302 33.333 4.54 0.00 0.00 3.66
5175 12757 7.782049 ACATCTAGATAAATCCGTTTCTGTGA 58.218 34.615 4.54 0.00 0.00 3.58
5176 12758 7.707035 ACATCTAGATAAATCCGTTTCTGTGAC 59.293 37.037 4.54 0.00 0.00 3.67
5177 12759 7.165460 TCTAGATAAATCCGTTTCTGTGACA 57.835 36.000 0.00 0.00 0.00 3.58
5178 12760 7.608153 TCTAGATAAATCCGTTTCTGTGACAA 58.392 34.615 0.00 0.00 0.00 3.18
5179 12761 6.727824 AGATAAATCCGTTTCTGTGACAAG 57.272 37.500 0.00 0.00 0.00 3.16
5180 12762 6.231211 AGATAAATCCGTTTCTGTGACAAGT 58.769 36.000 0.00 0.00 0.00 3.16
5181 12763 7.383687 AGATAAATCCGTTTCTGTGACAAGTA 58.616 34.615 0.00 0.00 0.00 2.24
5182 12764 8.041323 AGATAAATCCGTTTCTGTGACAAGTAT 58.959 33.333 0.00 0.00 0.00 2.12
5183 12765 6.877611 AAATCCGTTTCTGTGACAAGTATT 57.122 33.333 0.00 0.00 0.00 1.89
5184 12766 6.877611 AATCCGTTTCTGTGACAAGTATTT 57.122 33.333 0.00 0.00 0.00 1.40
5185 12767 6.877611 ATCCGTTTCTGTGACAAGTATTTT 57.122 33.333 0.00 0.00 0.00 1.82
5186 12768 6.295039 TCCGTTTCTGTGACAAGTATTTTC 57.705 37.500 0.00 0.00 0.00 2.29
5187 12769 5.050634 TCCGTTTCTGTGACAAGTATTTTCG 60.051 40.000 0.00 0.00 0.00 3.46
5188 12770 5.137403 CGTTTCTGTGACAAGTATTTTCGG 58.863 41.667 0.00 0.00 0.00 4.30
5189 12771 5.050634 CGTTTCTGTGACAAGTATTTTCGGA 60.051 40.000 0.00 0.00 0.00 4.55
5190 12772 5.917541 TTCTGTGACAAGTATTTTCGGAC 57.082 39.130 0.00 0.00 0.00 4.79
5191 12773 3.985279 TCTGTGACAAGTATTTTCGGACG 59.015 43.478 0.00 0.00 0.00 4.79
5192 12774 3.061322 TGTGACAAGTATTTTCGGACGG 58.939 45.455 0.00 0.00 0.00 4.79
5193 12775 3.243805 TGTGACAAGTATTTTCGGACGGA 60.244 43.478 0.00 0.00 0.00 4.69
5194 12776 3.367025 GTGACAAGTATTTTCGGACGGAG 59.633 47.826 0.00 0.00 0.00 4.63
5195 12777 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
5196 12778 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
5197 12779 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
5198 12780 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
5199 12781 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
5200 12782 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
5201 12783 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
5202 12784 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73
5203 12785 0.911769 TTCGGACGGAGGGAGTACTA 59.088 55.000 0.00 0.00 0.00 1.82
5204 12786 0.179000 TCGGACGGAGGGAGTACTAC 59.821 60.000 0.00 0.00 0.00 2.73
5205 12787 0.179936 CGGACGGAGGGAGTACTACT 59.820 60.000 4.77 1.85 0.00 2.57
5206 12788 1.407989 CGGACGGAGGGAGTACTACTT 60.408 57.143 4.77 0.00 0.00 2.24
5207 12789 2.732763 GGACGGAGGGAGTACTACTTT 58.267 52.381 4.77 0.00 0.00 2.66
5208 12790 3.095332 GGACGGAGGGAGTACTACTTTT 58.905 50.000 4.77 0.00 0.00 2.27
5209 12791 3.513119 GGACGGAGGGAGTACTACTTTTT 59.487 47.826 4.77 0.00 0.00 1.94
5210 12792 4.706962 GGACGGAGGGAGTACTACTTTTTA 59.293 45.833 4.77 0.00 0.00 1.52
5211 12793 5.362143 GGACGGAGGGAGTACTACTTTTTAT 59.638 44.000 4.77 0.00 0.00 1.40
5212 12794 6.547510 GGACGGAGGGAGTACTACTTTTTATA 59.452 42.308 4.77 0.00 0.00 0.98
5213 12795 7.340122 ACGGAGGGAGTACTACTTTTTATAC 57.660 40.000 4.77 0.00 0.00 1.47
5214 12796 7.122048 ACGGAGGGAGTACTACTTTTTATACT 58.878 38.462 4.77 0.00 0.00 2.12
5215 12797 7.067981 ACGGAGGGAGTACTACTTTTTATACTG 59.932 40.741 4.77 0.00 0.00 2.74
5381 12966 7.230222 CGTCTGTTTGTTCACTTCATTCTATC 58.770 38.462 0.00 0.00 0.00 2.08
5495 13080 7.425577 TGAGAATATTAATCTCCGCATGTTG 57.574 36.000 6.35 0.00 42.14 3.33
5731 13321 7.895975 ATGAACATCATGTATTCATAGTCGG 57.104 36.000 15.50 0.00 40.44 4.79
6067 13657 2.035530 GCTCATGTTAAGGCAGAGCT 57.964 50.000 0.00 0.00 46.06 4.09
6077 13667 0.252467 AGGCAGAGCTTCCCTACAGT 60.252 55.000 0.00 0.00 0.00 3.55
6137 13727 1.041437 ATAGTTCCAGCTACCGCTCC 58.959 55.000 0.00 0.00 45.15 4.70
6154 13744 3.629398 CGCTCCTAATCCATTGCTTTCTT 59.371 43.478 0.00 0.00 0.00 2.52
6156 13746 4.037327 GCTCCTAATCCATTGCTTTCTTCC 59.963 45.833 0.00 0.00 0.00 3.46
6214 13804 1.093159 GGCTGCTTCATCTGTTCAGG 58.907 55.000 0.00 0.00 0.00 3.86
6445 14035 1.197721 CTGACATCAGGCGTTGGTTTC 59.802 52.381 0.58 0.00 40.20 2.78
6446 14036 1.202758 TGACATCAGGCGTTGGTTTCT 60.203 47.619 0.00 0.00 0.00 2.52
6449 14039 1.393539 CATCAGGCGTTGGTTTCTACG 59.606 52.381 0.00 0.00 43.09 3.51
6470 14060 3.006323 CGGAGACCTGCTTAGATGCTAAT 59.994 47.826 0.00 0.00 0.00 1.73
6475 14065 8.482128 GGAGACCTGCTTAGATGCTAATTATAT 58.518 37.037 0.00 0.00 0.00 0.86
6509 14099 0.657840 ATCGATGCTTTAGTTGCCGC 59.342 50.000 0.00 0.00 0.00 6.53
6516 14106 3.804036 TGCTTTAGTTGCCGCTATGTAT 58.196 40.909 0.00 0.00 0.00 2.29
6517 14107 4.951254 TGCTTTAGTTGCCGCTATGTATA 58.049 39.130 0.00 0.00 0.00 1.47
6519 14109 5.995282 TGCTTTAGTTGCCGCTATGTATATT 59.005 36.000 0.00 0.00 0.00 1.28
6520 14110 6.485313 TGCTTTAGTTGCCGCTATGTATATTT 59.515 34.615 0.00 0.00 0.00 1.40
6521 14111 7.658167 TGCTTTAGTTGCCGCTATGTATATTTA 59.342 33.333 0.00 0.00 0.00 1.40
6523 14113 9.807386 CTTTAGTTGCCGCTATGTATATTTAAC 57.193 33.333 0.00 0.00 0.00 2.01
6610 14200 7.698836 CACTTTTGTGGTCTCTTTTATTTGG 57.301 36.000 0.00 0.00 46.16 3.28
6833 15730 0.554305 TCTCCCGGCTATGGTCACTA 59.446 55.000 0.00 0.00 0.00 2.74
6930 15887 5.183969 TGGCTACTAGTACTAGTCACTGTG 58.816 45.833 33.47 19.48 44.58 3.66
7336 16370 8.822652 AAATTTGCAAACAATTTTTGGAAACA 57.177 23.077 15.41 11.22 46.80 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.649277 CTTCCACGAGAGGCACGGG 62.649 68.421 0.00 0.00 34.93 5.28
11 12 2.125912 CTTCCACGAGAGGCACGG 60.126 66.667 0.00 0.00 34.93 4.94
12 13 2.811317 GCTTCCACGAGAGGCACG 60.811 66.667 8.88 0.00 46.54 5.34
16 17 1.884235 AGTTTTGCTTCCACGAGAGG 58.116 50.000 0.00 0.00 0.00 3.69
17 18 3.372206 CCATAGTTTTGCTTCCACGAGAG 59.628 47.826 0.00 0.00 0.00 3.20
18 19 3.334691 CCATAGTTTTGCTTCCACGAGA 58.665 45.455 0.00 0.00 0.00 4.04
19 20 2.159517 GCCATAGTTTTGCTTCCACGAG 60.160 50.000 0.00 0.00 0.00 4.18
20 21 1.810151 GCCATAGTTTTGCTTCCACGA 59.190 47.619 0.00 0.00 0.00 4.35
21 22 1.812571 AGCCATAGTTTTGCTTCCACG 59.187 47.619 0.00 0.00 29.17 4.94
22 23 3.084786 AGAGCCATAGTTTTGCTTCCAC 58.915 45.455 0.00 0.00 34.99 4.02
23 24 3.347216 GAGAGCCATAGTTTTGCTTCCA 58.653 45.455 0.00 0.00 34.99 3.53
24 25 2.352960 CGAGAGCCATAGTTTTGCTTCC 59.647 50.000 0.00 0.00 34.99 3.46
25 26 3.003480 ACGAGAGCCATAGTTTTGCTTC 58.997 45.455 0.00 0.00 34.99 3.86
26 27 2.744202 CACGAGAGCCATAGTTTTGCTT 59.256 45.455 0.00 0.00 34.99 3.91
27 28 2.350522 CACGAGAGCCATAGTTTTGCT 58.649 47.619 0.00 0.00 38.24 3.91
28 29 1.398390 CCACGAGAGCCATAGTTTTGC 59.602 52.381 0.00 0.00 0.00 3.68
29 30 2.972625 TCCACGAGAGCCATAGTTTTG 58.027 47.619 0.00 0.00 0.00 2.44
30 31 3.695830 TTCCACGAGAGCCATAGTTTT 57.304 42.857 0.00 0.00 0.00 2.43
31 32 3.260884 TCTTTCCACGAGAGCCATAGTTT 59.739 43.478 0.00 0.00 0.00 2.66
32 33 2.832129 TCTTTCCACGAGAGCCATAGTT 59.168 45.455 0.00 0.00 0.00 2.24
33 34 2.457598 TCTTTCCACGAGAGCCATAGT 58.542 47.619 0.00 0.00 0.00 2.12
34 35 3.526931 TTCTTTCCACGAGAGCCATAG 57.473 47.619 0.00 0.00 0.00 2.23
35 36 3.973206 TTTCTTTCCACGAGAGCCATA 57.027 42.857 0.00 0.00 0.00 2.74
36 37 2.859165 TTTCTTTCCACGAGAGCCAT 57.141 45.000 0.00 0.00 0.00 4.40
37 38 2.631160 TTTTCTTTCCACGAGAGCCA 57.369 45.000 0.00 0.00 0.00 4.75
74 75 2.626266 GCCTCTTTCGGAAAGGGAAAAA 59.374 45.455 27.71 9.07 41.66 1.94
75 76 2.235891 GCCTCTTTCGGAAAGGGAAAA 58.764 47.619 27.71 9.72 41.66 2.29
76 77 1.144093 TGCCTCTTTCGGAAAGGGAAA 59.856 47.619 27.71 14.52 41.66 3.13
77 78 0.768622 TGCCTCTTTCGGAAAGGGAA 59.231 50.000 27.71 19.29 41.66 3.97
78 79 0.036306 GTGCCTCTTTCGGAAAGGGA 59.964 55.000 27.71 14.21 41.66 4.20
79 80 1.298859 CGTGCCTCTTTCGGAAAGGG 61.299 60.000 25.66 23.41 38.75 3.95
80 81 1.912371 GCGTGCCTCTTTCGGAAAGG 61.912 60.000 25.66 15.57 39.01 3.11
81 82 1.497722 GCGTGCCTCTTTCGGAAAG 59.502 57.895 21.64 21.64 39.88 2.62
82 83 1.964373 GGCGTGCCTCTTTCGGAAA 60.964 57.895 2.98 2.78 0.00 3.13
83 84 2.358247 GGCGTGCCTCTTTCGGAA 60.358 61.111 2.98 0.00 0.00 4.30
84 85 4.388499 GGGCGTGCCTCTTTCGGA 62.388 66.667 11.25 0.00 36.10 4.55
87 88 3.423154 CACGGGCGTGCCTCTTTC 61.423 66.667 11.25 0.00 39.39 2.62
88 89 3.936203 TCACGGGCGTGCCTCTTT 61.936 61.111 11.25 0.00 45.04 2.52
89 90 4.681978 GTCACGGGCGTGCCTCTT 62.682 66.667 11.25 0.00 45.04 2.85
98 99 3.909258 TTTCGCGAGAGTCACGGGC 62.909 63.158 19.58 3.80 43.69 6.13
99 100 1.801913 CTTTCGCGAGAGTCACGGG 60.802 63.158 17.92 18.58 43.69 5.28
100 101 2.437343 GCTTTCGCGAGAGTCACGG 61.437 63.158 25.34 2.90 43.69 4.94
101 102 1.729484 TGCTTTCGCGAGAGTCACG 60.729 57.895 25.34 5.53 43.69 4.35
102 103 0.939577 TGTGCTTTCGCGAGAGTCAC 60.940 55.000 29.56 29.56 43.69 3.67
103 104 0.249280 TTGTGCTTTCGCGAGAGTCA 60.249 50.000 25.34 20.22 43.69 3.41
104 105 0.161870 GTTGTGCTTTCGCGAGAGTC 59.838 55.000 25.34 18.16 43.69 3.36
105 106 1.222115 GGTTGTGCTTTCGCGAGAGT 61.222 55.000 25.34 0.00 43.69 3.24
106 107 1.493311 GGTTGTGCTTTCGCGAGAG 59.507 57.895 21.42 21.42 43.69 3.20
107 108 2.307309 CGGTTGTGCTTTCGCGAGA 61.307 57.895 9.59 3.35 39.65 4.04
108 109 1.279527 TACGGTTGTGCTTTCGCGAG 61.280 55.000 9.59 0.00 39.65 5.03
109 110 1.300003 TACGGTTGTGCTTTCGCGA 60.300 52.632 3.71 3.71 39.65 5.87
110 111 1.154727 GTACGGTTGTGCTTTCGCG 60.155 57.895 0.00 0.00 39.65 5.87
111 112 1.205820 GGTACGGTTGTGCTTTCGC 59.794 57.895 0.00 0.00 0.00 4.70
112 113 0.788391 GAGGTACGGTTGTGCTTTCG 59.212 55.000 0.00 0.00 0.00 3.46
113 114 1.798813 CAGAGGTACGGTTGTGCTTTC 59.201 52.381 0.00 0.00 0.00 2.62
114 115 1.542547 CCAGAGGTACGGTTGTGCTTT 60.543 52.381 0.00 0.00 0.00 3.51
115 116 0.034896 CCAGAGGTACGGTTGTGCTT 59.965 55.000 0.00 0.00 0.00 3.91
116 117 1.671742 CCAGAGGTACGGTTGTGCT 59.328 57.895 0.00 0.00 0.00 4.40
117 118 2.033194 GCCAGAGGTACGGTTGTGC 61.033 63.158 0.00 0.00 0.00 4.57
118 119 0.250124 TTGCCAGAGGTACGGTTGTG 60.250 55.000 0.00 0.00 0.00 3.33
119 120 0.470766 TTTGCCAGAGGTACGGTTGT 59.529 50.000 0.00 0.00 0.00 3.32
120 121 1.535462 CTTTTGCCAGAGGTACGGTTG 59.465 52.381 0.00 0.00 0.00 3.77
121 122 1.892209 CTTTTGCCAGAGGTACGGTT 58.108 50.000 0.00 0.00 0.00 4.44
122 123 0.605589 GCTTTTGCCAGAGGTACGGT 60.606 55.000 0.00 0.00 40.15 4.83
123 124 0.605319 TGCTTTTGCCAGAGGTACGG 60.605 55.000 0.00 0.00 46.87 4.02
124 125 1.234821 TTGCTTTTGCCAGAGGTACG 58.765 50.000 0.00 0.00 46.87 3.67
125 126 3.381045 GTTTTGCTTTTGCCAGAGGTAC 58.619 45.455 0.00 0.00 46.87 3.34
126 127 2.364002 GGTTTTGCTTTTGCCAGAGGTA 59.636 45.455 0.00 0.00 46.87 3.08
127 128 1.138859 GGTTTTGCTTTTGCCAGAGGT 59.861 47.619 0.00 0.00 46.87 3.85
128 129 1.869342 CGGTTTTGCTTTTGCCAGAGG 60.869 52.381 0.00 0.00 46.87 3.69
129 130 1.202405 ACGGTTTTGCTTTTGCCAGAG 60.202 47.619 0.00 0.00 46.87 3.35
130 131 0.820871 ACGGTTTTGCTTTTGCCAGA 59.179 45.000 0.00 0.00 46.87 3.86
131 132 0.929615 CACGGTTTTGCTTTTGCCAG 59.070 50.000 0.00 0.00 46.87 4.85
132 133 0.532573 TCACGGTTTTGCTTTTGCCA 59.467 45.000 0.00 0.00 46.87 4.92
133 134 0.927537 GTCACGGTTTTGCTTTTGCC 59.072 50.000 0.00 0.00 46.87 4.52
135 136 3.363178 GAGAGTCACGGTTTTGCTTTTG 58.637 45.455 0.00 0.00 0.00 2.44
136 137 2.031683 CGAGAGTCACGGTTTTGCTTTT 59.968 45.455 1.62 0.00 0.00 2.27
137 138 1.597663 CGAGAGTCACGGTTTTGCTTT 59.402 47.619 1.62 0.00 0.00 3.51
138 139 1.217882 CGAGAGTCACGGTTTTGCTT 58.782 50.000 1.62 0.00 0.00 3.91
139 140 1.222115 GCGAGAGTCACGGTTTTGCT 61.222 55.000 11.95 0.00 0.00 3.91
140 141 1.204312 GCGAGAGTCACGGTTTTGC 59.796 57.895 11.95 0.00 0.00 3.68
141 142 0.937699 TCGCGAGAGTCACGGTTTTG 60.938 55.000 3.71 0.00 34.84 2.44
142 143 0.249155 TTCGCGAGAGTCACGGTTTT 60.249 50.000 9.59 0.00 43.69 2.43
143 144 0.249155 TTTCGCGAGAGTCACGGTTT 60.249 50.000 9.59 0.00 43.69 3.27
144 145 0.663568 CTTTCGCGAGAGTCACGGTT 60.664 55.000 17.92 0.00 43.69 4.44
145 146 1.081376 CTTTCGCGAGAGTCACGGT 60.081 57.895 17.92 0.00 43.69 4.83
146 147 0.386858 TTCTTTCGCGAGAGTCACGG 60.387 55.000 24.05 0.86 43.69 4.94
147 148 1.405461 TTTCTTTCGCGAGAGTCACG 58.595 50.000 24.05 5.53 43.69 4.35
148 149 3.854286 TTTTTCTTTCGCGAGAGTCAC 57.146 42.857 24.05 0.00 43.69 3.67
187 188 0.036306 GCCTCTCGGACAGGGAAAAA 59.964 55.000 1.33 0.00 0.00 1.94
188 189 1.125093 TGCCTCTCGGACAGGGAAAA 61.125 55.000 1.33 0.00 0.00 2.29
189 190 1.535444 TGCCTCTCGGACAGGGAAA 60.535 57.895 1.33 0.00 0.00 3.13
190 191 2.119611 TGCCTCTCGGACAGGGAA 59.880 61.111 1.33 0.00 0.00 3.97
191 192 2.680352 GTGCCTCTCGGACAGGGA 60.680 66.667 1.33 0.00 0.00 4.20
192 193 4.135153 CGTGCCTCTCGGACAGGG 62.135 72.222 1.33 0.00 0.00 4.45
208 209 4.717629 TTGCGAGAGTCACGGCCG 62.718 66.667 26.86 26.86 0.00 6.13
209 210 1.901650 CTTTTGCGAGAGTCACGGCC 61.902 60.000 11.95 0.00 0.00 6.13
210 211 1.493311 CTTTTGCGAGAGTCACGGC 59.507 57.895 11.95 5.00 0.00 5.68
211 212 1.493311 GCTTTTGCGAGAGTCACGG 59.507 57.895 11.95 0.00 34.86 4.94
632 633 4.571580 TCTTCCTTAGCGTTTCGACAAAAA 59.428 37.500 0.00 0.00 0.00 1.94
633 634 4.025480 GTCTTCCTTAGCGTTTCGACAAAA 60.025 41.667 0.00 0.00 0.00 2.44
634 635 3.492011 GTCTTCCTTAGCGTTTCGACAAA 59.508 43.478 0.00 0.00 0.00 2.83
635 636 3.054878 GTCTTCCTTAGCGTTTCGACAA 58.945 45.455 0.00 0.00 0.00 3.18
636 637 2.608752 GGTCTTCCTTAGCGTTTCGACA 60.609 50.000 0.00 0.00 0.00 4.35
637 638 1.991264 GGTCTTCCTTAGCGTTTCGAC 59.009 52.381 0.00 0.00 0.00 4.20
638 639 1.401931 CGGTCTTCCTTAGCGTTTCGA 60.402 52.381 0.00 0.00 33.40 3.71
639 640 0.989890 CGGTCTTCCTTAGCGTTTCG 59.010 55.000 0.00 0.00 33.40 3.46
640 641 1.356938 CCGGTCTTCCTTAGCGTTTC 58.643 55.000 0.00 0.00 36.16 2.78
641 642 0.036671 CCCGGTCTTCCTTAGCGTTT 60.037 55.000 0.00 0.00 36.16 3.60
642 643 1.595357 CCCGGTCTTCCTTAGCGTT 59.405 57.895 0.00 0.00 36.16 4.84
643 644 2.356780 CCCCGGTCTTCCTTAGCGT 61.357 63.158 0.00 0.00 36.16 5.07
644 645 1.610554 TTCCCCGGTCTTCCTTAGCG 61.611 60.000 0.00 0.00 37.58 4.26
645 646 0.616891 TTTCCCCGGTCTTCCTTAGC 59.383 55.000 0.00 0.00 0.00 3.09
646 647 3.079578 GTTTTTCCCCGGTCTTCCTTAG 58.920 50.000 0.00 0.00 0.00 2.18
647 648 2.224843 GGTTTTTCCCCGGTCTTCCTTA 60.225 50.000 0.00 0.00 0.00 2.69
648 649 1.479942 GGTTTTTCCCCGGTCTTCCTT 60.480 52.381 0.00 0.00 0.00 3.36
649 650 0.111832 GGTTTTTCCCCGGTCTTCCT 59.888 55.000 0.00 0.00 0.00 3.36
650 651 0.178984 TGGTTTTTCCCCGGTCTTCC 60.179 55.000 0.00 0.00 34.77 3.46
651 652 1.694844 TTGGTTTTTCCCCGGTCTTC 58.305 50.000 0.00 0.00 34.77 2.87
652 653 2.162264 TTTGGTTTTTCCCCGGTCTT 57.838 45.000 0.00 0.00 34.77 3.01
653 654 1.758280 GTTTTGGTTTTTCCCCGGTCT 59.242 47.619 0.00 0.00 34.77 3.85
654 655 1.536496 CGTTTTGGTTTTTCCCCGGTC 60.536 52.381 0.00 0.00 34.77 4.79
655 656 0.460722 CGTTTTGGTTTTTCCCCGGT 59.539 50.000 0.00 0.00 34.77 5.28
656 657 0.460722 ACGTTTTGGTTTTTCCCCGG 59.539 50.000 0.00 0.00 34.77 5.73
657 658 1.842720 GACGTTTTGGTTTTTCCCCG 58.157 50.000 0.00 0.00 34.77 5.73
658 659 1.404748 TCGACGTTTTGGTTTTTCCCC 59.595 47.619 0.00 0.00 34.77 4.81
659 660 2.847959 TCGACGTTTTGGTTTTTCCC 57.152 45.000 0.00 0.00 34.77 3.97
660 661 5.512573 TTTTTCGACGTTTTGGTTTTTCC 57.487 34.783 0.00 0.00 0.00 3.13
691 692 6.305639 GTTTTCGGCTTTTTAAACGGTTTTT 58.694 32.000 11.87 0.00 0.00 1.94
692 693 5.444350 CGTTTTCGGCTTTTTAAACGGTTTT 60.444 36.000 11.87 0.00 45.26 2.43
693 694 4.031539 CGTTTTCGGCTTTTTAAACGGTTT 59.968 37.500 11.33 11.33 45.26 3.27
694 695 3.547068 CGTTTTCGGCTTTTTAAACGGTT 59.453 39.130 10.17 0.00 45.26 4.44
695 696 3.107407 CGTTTTCGGCTTTTTAAACGGT 58.893 40.909 10.17 0.00 45.26 4.83
696 697 3.739484 CGTTTTCGGCTTTTTAAACGG 57.261 42.857 10.17 0.00 45.26 4.44
698 699 2.531103 ACGCGTTTTCGGCTTTTTAAAC 59.469 40.909 5.58 0.00 44.29 2.01
699 700 2.530700 CACGCGTTTTCGGCTTTTTAAA 59.469 40.909 10.22 0.00 44.29 1.52
700 701 2.110226 CACGCGTTTTCGGCTTTTTAA 58.890 42.857 10.22 0.00 44.29 1.52
701 702 1.744374 CACGCGTTTTCGGCTTTTTA 58.256 45.000 10.22 0.00 44.29 1.52
702 703 1.476235 GCACGCGTTTTCGGCTTTTT 61.476 50.000 10.22 0.00 44.29 1.94
703 704 1.942223 GCACGCGTTTTCGGCTTTT 60.942 52.632 10.22 0.00 44.29 2.27
704 705 2.353030 GCACGCGTTTTCGGCTTT 60.353 55.556 10.22 0.00 44.29 3.51
705 706 4.659874 CGCACGCGTTTTCGGCTT 62.660 61.111 10.22 0.00 44.29 4.35
708 709 2.968330 TTTTCCGCACGCGTTTTCGG 62.968 55.000 28.08 28.08 44.29 4.30
710 711 2.568127 TTTTTCCGCACGCGTTTTC 58.432 47.368 10.22 0.04 37.81 2.29
711 712 4.787999 TTTTTCCGCACGCGTTTT 57.212 44.444 10.22 0.00 37.81 2.43
728 729 6.533723 GGACGTTTCCTTCAGATTTTGTTTTT 59.466 34.615 0.00 0.00 39.13 1.94
729 730 6.040247 GGACGTTTCCTTCAGATTTTGTTTT 58.960 36.000 0.00 0.00 39.13 2.43
730 731 5.126384 TGGACGTTTCCTTCAGATTTTGTTT 59.874 36.000 0.00 0.00 43.31 2.83
731 732 4.642885 TGGACGTTTCCTTCAGATTTTGTT 59.357 37.500 0.00 0.00 43.31 2.83
732 733 4.204012 TGGACGTTTCCTTCAGATTTTGT 58.796 39.130 0.00 0.00 43.31 2.83
733 734 4.515191 TCTGGACGTTTCCTTCAGATTTTG 59.485 41.667 0.00 0.00 43.31 2.44
734 735 4.714632 TCTGGACGTTTCCTTCAGATTTT 58.285 39.130 0.00 0.00 43.31 1.82
735 736 4.319177 CTCTGGACGTTTCCTTCAGATTT 58.681 43.478 0.00 0.00 43.31 2.17
736 737 3.866449 GCTCTGGACGTTTCCTTCAGATT 60.866 47.826 0.00 0.00 43.31 2.40
737 738 2.354203 GCTCTGGACGTTTCCTTCAGAT 60.354 50.000 0.00 0.00 43.31 2.90
738 739 1.000955 GCTCTGGACGTTTCCTTCAGA 59.999 52.381 0.00 0.00 43.31 3.27
739 740 1.433534 GCTCTGGACGTTTCCTTCAG 58.566 55.000 0.00 0.00 43.31 3.02
740 741 0.319555 CGCTCTGGACGTTTCCTTCA 60.320 55.000 0.00 0.00 43.31 3.02
741 742 1.627550 GCGCTCTGGACGTTTCCTTC 61.628 60.000 0.00 0.00 43.31 3.46
742 743 1.668151 GCGCTCTGGACGTTTCCTT 60.668 57.895 0.00 0.00 43.31 3.36
743 744 2.048127 GCGCTCTGGACGTTTCCT 60.048 61.111 0.00 0.00 43.31 3.36
744 745 3.479269 CGCGCTCTGGACGTTTCC 61.479 66.667 5.56 0.00 43.19 3.13
745 746 2.430244 TCGCGCTCTGGACGTTTC 60.430 61.111 5.56 0.00 0.00 2.78
746 747 2.733593 GTCGCGCTCTGGACGTTT 60.734 61.111 5.56 0.00 0.00 3.60
747 748 3.973516 TGTCGCGCTCTGGACGTT 61.974 61.111 5.56 0.00 35.95 3.99
748 749 4.702081 GTGTCGCGCTCTGGACGT 62.702 66.667 5.56 0.00 35.95 4.34
750 751 4.702081 ACGTGTCGCGCTCTGGAC 62.702 66.667 5.56 5.97 46.11 4.02
751 752 4.700365 CACGTGTCGCGCTCTGGA 62.700 66.667 7.58 0.00 46.11 3.86
759 760 4.147322 CCATTCGCCACGTGTCGC 62.147 66.667 15.09 10.47 0.00 5.19
760 761 4.147322 GCCATTCGCCACGTGTCG 62.147 66.667 13.61 13.61 0.00 4.35
761 762 2.742372 AGCCATTCGCCACGTGTC 60.742 61.111 15.65 0.00 38.78 3.67
762 763 3.049674 CAGCCATTCGCCACGTGT 61.050 61.111 15.65 0.00 38.78 4.49
763 764 2.741985 TCAGCCATTCGCCACGTG 60.742 61.111 9.08 9.08 38.78 4.49
764 765 2.434884 CTCAGCCATTCGCCACGT 60.435 61.111 0.00 0.00 38.78 4.49
765 766 2.125552 TCTCAGCCATTCGCCACG 60.126 61.111 0.00 0.00 38.78 4.94
766 767 2.467826 GCTCTCAGCCATTCGCCAC 61.468 63.158 0.00 0.00 38.78 5.01
767 768 2.124983 GCTCTCAGCCATTCGCCA 60.125 61.111 0.00 0.00 38.78 5.69
768 769 3.267860 CGCTCTCAGCCATTCGCC 61.268 66.667 0.00 0.00 38.18 5.54
769 770 3.934684 GCGCTCTCAGCCATTCGC 61.935 66.667 0.00 0.00 38.18 4.70
770 771 3.624300 CGCGCTCTCAGCCATTCG 61.624 66.667 5.56 0.00 38.18 3.34
771 772 1.760268 CTTCGCGCTCTCAGCCATTC 61.760 60.000 5.56 0.00 38.18 2.67
772 773 1.812922 CTTCGCGCTCTCAGCCATT 60.813 57.895 5.56 0.00 38.18 3.16
773 774 2.202851 CTTCGCGCTCTCAGCCAT 60.203 61.111 5.56 0.00 38.18 4.40
774 775 3.684990 ACTTCGCGCTCTCAGCCA 61.685 61.111 5.56 0.00 38.18 4.75
775 776 3.184683 CACTTCGCGCTCTCAGCC 61.185 66.667 5.56 0.00 38.18 4.85
776 777 3.184683 CCACTTCGCGCTCTCAGC 61.185 66.667 5.56 0.00 38.02 4.26
777 778 3.184683 GCCACTTCGCGCTCTCAG 61.185 66.667 5.56 0.00 0.00 3.35
786 787 2.094659 AACGATCAGCGCCACTTCG 61.095 57.895 2.29 10.97 46.04 3.79
787 788 1.421485 CAACGATCAGCGCCACTTC 59.579 57.895 2.29 0.00 46.04 3.01
788 789 2.680913 GCAACGATCAGCGCCACTT 61.681 57.895 2.29 0.00 46.04 3.16
789 790 3.121030 GCAACGATCAGCGCCACT 61.121 61.111 2.29 0.00 46.04 4.00
795 796 2.510238 AGCCTCGCAACGATCAGC 60.510 61.111 0.00 0.00 34.61 4.26
796 797 1.880340 GGAGCCTCGCAACGATCAG 60.880 63.158 0.00 0.00 34.61 2.90
797 798 2.184322 GGAGCCTCGCAACGATCA 59.816 61.111 0.00 0.00 34.61 2.92
798 799 2.586357 GGGAGCCTCGCAACGATC 60.586 66.667 3.57 0.00 34.61 3.69
799 800 4.514577 CGGGAGCCTCGCAACGAT 62.515 66.667 9.61 0.00 34.61 3.73
801 802 4.735132 TTCGGGAGCCTCGCAACG 62.735 66.667 9.61 0.36 0.00 4.10
802 803 2.815647 CTTCGGGAGCCTCGCAAC 60.816 66.667 9.61 0.00 0.00 4.17
803 804 4.082523 CCTTCGGGAGCCTCGCAA 62.083 66.667 9.61 2.18 37.25 4.85
813 814 2.552585 TTAACGAGCGCTCCTTCGGG 62.553 60.000 30.66 17.99 0.00 5.14
814 815 1.153901 TTAACGAGCGCTCCTTCGG 60.154 57.895 30.66 18.71 0.00 4.30
815 816 0.456312 AGTTAACGAGCGCTCCTTCG 60.456 55.000 30.66 22.24 0.00 3.79
816 817 2.159407 ACTAGTTAACGAGCGCTCCTTC 60.159 50.000 30.66 14.44 0.00 3.46
817 818 1.817447 ACTAGTTAACGAGCGCTCCTT 59.183 47.619 30.66 26.03 0.00 3.36
818 819 1.461559 ACTAGTTAACGAGCGCTCCT 58.538 50.000 30.66 22.52 0.00 3.69
819 820 1.918609 CAACTAGTTAACGAGCGCTCC 59.081 52.381 30.66 16.60 0.00 4.70
820 821 1.320852 GCAACTAGTTAACGAGCGCTC 59.679 52.381 27.64 27.64 0.00 5.03
821 822 1.067776 AGCAACTAGTTAACGAGCGCT 60.068 47.619 20.45 20.45 0.00 5.92
822 823 1.320852 GAGCAACTAGTTAACGAGCGC 59.679 52.381 14.82 16.38 0.00 5.92
823 824 1.918609 GGAGCAACTAGTTAACGAGCG 59.081 52.381 14.82 8.20 0.00 5.03
824 825 2.269172 GGGAGCAACTAGTTAACGAGC 58.731 52.381 14.82 7.28 0.00 5.03
825 826 3.251571 GTGGGAGCAACTAGTTAACGAG 58.748 50.000 13.50 13.50 0.00 4.18
826 827 2.629137 TGTGGGAGCAACTAGTTAACGA 59.371 45.455 8.04 0.00 0.00 3.85
827 828 3.034721 TGTGGGAGCAACTAGTTAACG 57.965 47.619 8.04 0.00 0.00 3.18
828 829 4.833390 AGATGTGGGAGCAACTAGTTAAC 58.167 43.478 8.04 3.72 0.00 2.01
829 830 4.777896 AGAGATGTGGGAGCAACTAGTTAA 59.222 41.667 8.04 0.00 0.00 2.01
830 831 4.353777 AGAGATGTGGGAGCAACTAGTTA 58.646 43.478 8.04 0.00 0.00 2.24
831 832 3.177228 AGAGATGTGGGAGCAACTAGTT 58.823 45.455 1.12 1.12 0.00 2.24
832 833 2.826488 AGAGATGTGGGAGCAACTAGT 58.174 47.619 0.00 0.00 0.00 2.57
833 834 3.902881 AAGAGATGTGGGAGCAACTAG 57.097 47.619 0.00 0.00 0.00 2.57
834 835 3.327757 ACAAAGAGATGTGGGAGCAACTA 59.672 43.478 0.00 0.00 30.82 2.24
835 836 2.107204 ACAAAGAGATGTGGGAGCAACT 59.893 45.455 0.00 0.00 30.82 3.16
836 837 2.508526 ACAAAGAGATGTGGGAGCAAC 58.491 47.619 0.00 0.00 30.82 4.17
837 838 2.957402 ACAAAGAGATGTGGGAGCAA 57.043 45.000 0.00 0.00 30.82 3.91
838 839 2.957402 AACAAAGAGATGTGGGAGCA 57.043 45.000 0.00 0.00 32.81 4.26
839 840 4.775236 AGATAACAAAGAGATGTGGGAGC 58.225 43.478 0.00 0.00 32.81 4.70
840 841 5.587844 CCAAGATAACAAAGAGATGTGGGAG 59.412 44.000 0.00 0.00 32.81 4.30
841 842 5.250543 TCCAAGATAACAAAGAGATGTGGGA 59.749 40.000 0.00 0.00 32.81 4.37
842 843 5.355350 GTCCAAGATAACAAAGAGATGTGGG 59.645 44.000 0.00 0.00 32.81 4.61
843 844 6.093219 CAGTCCAAGATAACAAAGAGATGTGG 59.907 42.308 0.00 0.00 32.81 4.17
844 845 6.652481 ACAGTCCAAGATAACAAAGAGATGTG 59.348 38.462 0.00 0.00 32.81 3.21
845 846 6.773638 ACAGTCCAAGATAACAAAGAGATGT 58.226 36.000 0.00 0.00 34.24 3.06
939 3502 2.831742 CTACGCTAGCCGGTGGGA 60.832 66.667 9.66 0.00 42.52 4.37
1461 4026 2.657237 CTCCGTTTCCAGTCCGCT 59.343 61.111 0.00 0.00 0.00 5.52
1537 4102 2.452505 CACCAAACCAAATACCCCGAT 58.547 47.619 0.00 0.00 0.00 4.18
1666 4231 6.388619 AGGAAAATGTGACTTACCTGGTAT 57.611 37.500 7.50 0.00 0.00 2.73
1695 4260 5.899299 GCATAATGCAGTTCTGATTTTCCT 58.101 37.500 3.84 0.00 44.26 3.36
1821 4393 2.227865 TGAACCAAACAAATCGCCTAGC 59.772 45.455 0.00 0.00 0.00 3.42
1962 4544 3.329520 ACCTGGTACCAGCTTTGTCAATA 59.670 43.478 32.98 0.00 42.35 1.90
1967 4549 2.026262 CCATACCTGGTACCAGCTTTGT 60.026 50.000 32.98 26.19 42.35 2.83
1980 4756 3.070018 GCACTATTGCTAGCCATACCTG 58.930 50.000 13.29 8.07 46.17 4.00
2169 4950 0.963962 CAAACAGCTCCAGGTTGCAT 59.036 50.000 9.30 0.00 0.00 3.96
2260 5042 6.568081 GCAAATAGATCATGATGGTGAAGAGC 60.568 42.308 14.30 4.08 0.00 4.09
2676 6504 4.604784 AGGCTACAGTTAGGACTTAGGA 57.395 45.455 0.00 0.00 32.54 2.94
2677 6505 6.980416 AATAGGCTACAGTTAGGACTTAGG 57.020 41.667 0.00 0.00 32.54 2.69
2678 6506 9.968870 CTAAAATAGGCTACAGTTAGGACTTAG 57.031 37.037 0.00 0.00 32.54 2.18
2679 6507 9.484806 ACTAAAATAGGCTACAGTTAGGACTTA 57.515 33.333 17.95 0.00 32.54 2.24
2680 6508 8.376803 ACTAAAATAGGCTACAGTTAGGACTT 57.623 34.615 17.95 0.00 32.54 3.01
2681 6509 7.974730 ACTAAAATAGGCTACAGTTAGGACT 57.025 36.000 17.95 0.00 36.25 3.85
2736 6564 5.582269 TCACGGACATCAGAATTGAAGAATC 59.418 40.000 0.00 0.00 36.78 2.52
2836 6665 1.490490 CTAAGAGCCCTTATGCACCCA 59.510 52.381 0.00 0.00 34.62 4.51
2899 6728 4.505324 AAGATAGGGAAAGGCTGGTTAC 57.495 45.455 0.00 0.00 0.00 2.50
2995 6825 5.713025 CTTGCAGTTGCCTAATTGTGTTAT 58.287 37.500 1.06 0.00 41.18 1.89
3125 6955 3.364664 GCCTTGCCTTGAACTTACGTTAC 60.365 47.826 0.00 0.00 32.39 2.50
3136 6966 1.075482 CCCTTCTGCCTTGCCTTGA 59.925 57.895 0.00 0.00 0.00 3.02
3144 6974 4.273318 GTTCATATTCAACCCTTCTGCCT 58.727 43.478 0.00 0.00 0.00 4.75
3412 7338 7.220740 TCACAGGTCACATTATAGTGTTCAAA 58.779 34.615 0.00 0.00 40.37 2.69
3538 7466 0.603065 GAACAAAGCCATGGGGTCAC 59.397 55.000 15.13 0.00 36.17 3.67
3719 7647 6.058183 CCCAACTAAGCACATAGATTTAGCT 58.942 40.000 0.00 0.00 37.08 3.32
3899 7827 5.066375 TGGACATCAGAATTAAAGAATGGCG 59.934 40.000 0.00 0.00 0.00 5.69
4185 11760 1.082690 GGCTCAGCTTGTACTTGCTC 58.917 55.000 9.60 1.30 37.44 4.26
4292 11873 8.159447 TCACTTACAACTAGTAACTAGACTCCA 58.841 37.037 0.00 0.00 37.77 3.86
4293 11874 8.558973 TCACTTACAACTAGTAACTAGACTCC 57.441 38.462 0.00 0.00 37.77 3.85
4320 11901 6.108015 CCCTGCCTTACACTTACGTTATAAA 58.892 40.000 0.00 0.00 0.00 1.40
4327 11908 1.734707 CGACCCTGCCTTACACTTACG 60.735 57.143 0.00 0.00 0.00 3.18
4337 11918 0.326238 TAATCCCTTCGACCCTGCCT 60.326 55.000 0.00 0.00 0.00 4.75
4374 11955 6.780457 AACATATCATTTGGGGTTTCTCAG 57.220 37.500 0.00 0.00 0.00 3.35
4375 11956 7.454380 AGAAAACATATCATTTGGGGTTTCTCA 59.546 33.333 0.00 0.00 0.00 3.27
4566 12147 8.846943 TCTAACAGCAAAATCAGAGAACAATA 57.153 30.769 0.00 0.00 0.00 1.90
4583 12164 5.648092 TGAAGAGGCCTAAAAATCTAACAGC 59.352 40.000 4.42 0.00 0.00 4.40
4656 12237 0.035317 GGTGTCATCACAGCCTCACA 59.965 55.000 0.00 0.00 44.03 3.58
4657 12238 2.846371 GGTGTCATCACAGCCTCAC 58.154 57.895 0.00 0.00 44.03 3.51
4661 12242 9.704849 TTGTTTTACAAAGGTGTCATCACAGCC 62.705 40.741 0.00 0.00 41.21 4.85
4662 12243 6.899258 TTGTTTTACAAAGGTGTCATCACAGC 60.899 38.462 0.00 0.00 40.91 4.40
4663 12244 6.130298 TGTTTTACAAAGGTGTCATCACAG 57.870 37.500 0.98 0.00 45.45 3.66
4717 12298 1.927487 TGAATGGGAGCAATTGCAGT 58.073 45.000 30.89 12.70 45.16 4.40
4735 12316 2.286872 GAGGTCATGACTCAGGCAATG 58.713 52.381 24.50 0.00 35.09 2.82
4761 12342 8.128582 CAGAGAAATAAACTGCACACTAACAAA 58.871 33.333 0.00 0.00 0.00 2.83
4762 12343 7.282224 ACAGAGAAATAAACTGCACACTAACAA 59.718 33.333 0.00 0.00 35.38 2.83
4837 12418 3.510719 GACAGCTGAACACAAAGCAAAA 58.489 40.909 23.35 0.00 42.06 2.44
4848 12429 6.683974 ATATGTTATGTTGGACAGCTGAAC 57.316 37.500 23.35 15.08 0.00 3.18
5014 12596 2.969443 AAAATTCCGAACTGAGCACG 57.031 45.000 0.00 0.00 0.00 5.34
5088 12670 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
5089 12671 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
5090 12672 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
5092 12674 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
5093 12675 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
5094 12676 2.165030 TCTCCGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 43.47 4.79
5095 12677 2.449464 TCTCCGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 45.74 5.14
5096 12678 2.953466 TCTCCGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
5097 12679 4.034048 CCATTTCTCCGACAAGTATTTCCG 59.966 45.833 0.00 0.00 0.00 4.30
5098 12680 5.183228 TCCATTTCTCCGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
5099 12681 6.927294 ATCCATTTCTCCGACAAGTATTTC 57.073 37.500 0.00 0.00 0.00 2.17
5100 12682 8.801882 TTTATCCATTTCTCCGACAAGTATTT 57.198 30.769 0.00 0.00 0.00 1.40
5101 12683 8.801882 TTTTATCCATTTCTCCGACAAGTATT 57.198 30.769 0.00 0.00 0.00 1.89
5102 12684 8.801882 TTTTTATCCATTTCTCCGACAAGTAT 57.198 30.769 0.00 0.00 0.00 2.12
5103 12685 8.673711 CATTTTTATCCATTTCTCCGACAAGTA 58.326 33.333 0.00 0.00 0.00 2.24
5104 12686 7.362920 CCATTTTTATCCATTTCTCCGACAAGT 60.363 37.037 0.00 0.00 0.00 3.16
5105 12687 6.974622 CCATTTTTATCCATTTCTCCGACAAG 59.025 38.462 0.00 0.00 0.00 3.16
5106 12688 6.661377 TCCATTTTTATCCATTTCTCCGACAA 59.339 34.615 0.00 0.00 0.00 3.18
5107 12689 6.184068 TCCATTTTTATCCATTTCTCCGACA 58.816 36.000 0.00 0.00 0.00 4.35
5108 12690 6.693315 TCCATTTTTATCCATTTCTCCGAC 57.307 37.500 0.00 0.00 0.00 4.79
5109 12691 6.833416 ACATCCATTTTTATCCATTTCTCCGA 59.167 34.615 0.00 0.00 0.00 4.55
5110 12692 7.042797 ACATCCATTTTTATCCATTTCTCCG 57.957 36.000 0.00 0.00 0.00 4.63
5118 12700 9.913310 TGTTGTAGATACATCCATTTTTATCCA 57.087 29.630 0.00 0.00 35.89 3.41
5126 12708 9.679661 TGTATTTGTGTTGTAGATACATCCATT 57.320 29.630 0.00 0.00 35.89 3.16
5127 12709 9.851686 ATGTATTTGTGTTGTAGATACATCCAT 57.148 29.630 0.00 0.00 38.75 3.41
5128 12710 9.325198 GATGTATTTGTGTTGTAGATACATCCA 57.675 33.333 17.60 0.00 45.75 3.41
5141 12723 9.832445 ACGGATTTATCTAGATGTATTTGTGTT 57.168 29.630 15.79 0.00 0.00 3.32
5142 12724 9.832445 AACGGATTTATCTAGATGTATTTGTGT 57.168 29.630 15.79 2.10 0.00 3.72
5148 12730 9.698309 CACAGAAACGGATTTATCTAGATGTAT 57.302 33.333 15.79 8.15 0.00 2.29
5149 12731 8.909923 TCACAGAAACGGATTTATCTAGATGTA 58.090 33.333 15.79 3.39 0.00 2.29
5150 12732 7.707035 GTCACAGAAACGGATTTATCTAGATGT 59.293 37.037 15.79 0.32 0.00 3.06
5151 12733 7.706607 TGTCACAGAAACGGATTTATCTAGATG 59.293 37.037 15.79 0.00 0.00 2.90
5152 12734 7.782049 TGTCACAGAAACGGATTTATCTAGAT 58.218 34.615 10.73 10.73 0.00 1.98
5153 12735 7.165460 TGTCACAGAAACGGATTTATCTAGA 57.835 36.000 0.00 0.00 0.00 2.43
5154 12736 7.545965 ACTTGTCACAGAAACGGATTTATCTAG 59.454 37.037 0.00 0.00 0.00 2.43
5155 12737 7.383687 ACTTGTCACAGAAACGGATTTATCTA 58.616 34.615 0.00 0.00 0.00 1.98
5156 12738 6.231211 ACTTGTCACAGAAACGGATTTATCT 58.769 36.000 0.00 0.00 0.00 1.98
5157 12739 6.481954 ACTTGTCACAGAAACGGATTTATC 57.518 37.500 0.00 0.00 0.00 1.75
5158 12740 8.561738 AATACTTGTCACAGAAACGGATTTAT 57.438 30.769 0.00 0.00 0.00 1.40
5159 12741 7.972832 AATACTTGTCACAGAAACGGATTTA 57.027 32.000 0.00 0.00 0.00 1.40
5160 12742 6.877611 AATACTTGTCACAGAAACGGATTT 57.122 33.333 0.00 0.00 0.00 2.17
5161 12743 6.877611 AAATACTTGTCACAGAAACGGATT 57.122 33.333 0.00 0.00 0.00 3.01
5162 12744 6.347402 CGAAAATACTTGTCACAGAAACGGAT 60.347 38.462 0.00 0.00 0.00 4.18
5163 12745 5.050634 CGAAAATACTTGTCACAGAAACGGA 60.051 40.000 0.00 0.00 0.00 4.69
5164 12746 5.137403 CGAAAATACTTGTCACAGAAACGG 58.863 41.667 0.00 0.00 0.00 4.44
5165 12747 5.050634 TCCGAAAATACTTGTCACAGAAACG 60.051 40.000 0.00 0.00 0.00 3.60
5166 12748 6.134061 GTCCGAAAATACTTGTCACAGAAAC 58.866 40.000 0.00 0.00 0.00 2.78
5167 12749 5.050634 CGTCCGAAAATACTTGTCACAGAAA 60.051 40.000 0.00 0.00 0.00 2.52
5168 12750 4.446385 CGTCCGAAAATACTTGTCACAGAA 59.554 41.667 0.00 0.00 0.00 3.02
5169 12751 3.985279 CGTCCGAAAATACTTGTCACAGA 59.015 43.478 0.00 0.00 0.00 3.41
5170 12752 3.122948 CCGTCCGAAAATACTTGTCACAG 59.877 47.826 0.00 0.00 0.00 3.66
5171 12753 3.061322 CCGTCCGAAAATACTTGTCACA 58.939 45.455 0.00 0.00 0.00 3.58
5172 12754 3.319755 TCCGTCCGAAAATACTTGTCAC 58.680 45.455 0.00 0.00 0.00 3.67
5173 12755 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
5174 12756 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
5175 12757 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
5176 12758 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
5177 12759 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
5178 12760 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
5179 12761 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
5180 12762 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
5181 12763 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
5182 12764 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
5183 12765 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
5184 12766 0.911769 TAGTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
5185 12767 0.179000 GTAGTACTCCCTCCGTCCGA 59.821 60.000 0.00 0.00 0.00 4.55
5186 12768 0.179936 AGTAGTACTCCCTCCGTCCG 59.820 60.000 0.00 0.00 0.00 4.79
5187 12769 2.433662 AAGTAGTACTCCCTCCGTCC 57.566 55.000 2.58 0.00 0.00 4.79
5188 12770 4.797800 AAAAAGTAGTACTCCCTCCGTC 57.202 45.455 2.58 0.00 0.00 4.79
5189 12771 7.067981 CAGTATAAAAAGTAGTACTCCCTCCGT 59.932 40.741 2.58 0.00 0.00 4.69
5190 12772 7.067981 ACAGTATAAAAAGTAGTACTCCCTCCG 59.932 40.741 2.58 0.00 0.00 4.63
5191 12773 8.303780 ACAGTATAAAAAGTAGTACTCCCTCC 57.696 38.462 2.58 0.00 0.00 4.30
5193 12775 9.987726 AGTACAGTATAAAAAGTAGTACTCCCT 57.012 33.333 2.58 0.00 36.85 4.20
5329 12914 2.096248 ACAGGCCGAACAAACAAGAAA 58.904 42.857 0.00 0.00 0.00 2.52
5356 12941 5.409643 AGAATGAAGTGAACAAACAGACG 57.590 39.130 0.00 0.00 0.00 4.18
5381 12966 0.317160 TCACACCAGAAGGCTACACG 59.683 55.000 0.00 0.00 39.06 4.49
5495 13080 2.545946 GAGTGAGAACTGGTGCAAAGAC 59.454 50.000 4.72 0.00 0.00 3.01
5726 13316 1.798813 GAAACGACAATTCAGCCGACT 59.201 47.619 0.00 0.00 0.00 4.18
5731 13321 6.363357 AGCATTTTAAGAAACGACAATTCAGC 59.637 34.615 0.00 0.00 0.00 4.26
5838 13428 4.039603 AGCTTCTTCCAAAATAGGCAGT 57.960 40.909 0.00 0.00 0.00 4.40
6067 13657 1.270625 CGCAACTCCAACTGTAGGGAA 60.271 52.381 3.18 0.00 31.58 3.97
6077 13667 2.215196 GGTACTTGTTCGCAACTCCAA 58.785 47.619 0.00 0.00 32.95 3.53
6137 13727 3.316308 CCCGGAAGAAAGCAATGGATTAG 59.684 47.826 0.73 0.00 0.00 1.73
6156 13746 3.622060 AATGGGACGCTGGTTCCCG 62.622 63.158 3.79 0.00 46.43 5.14
6214 13804 2.815647 GCCGCCACTGTACTGAGC 60.816 66.667 6.77 7.91 0.00 4.26
6409 13999 3.288092 TGTCAGGTAGCATCATCTACGT 58.712 45.455 0.00 0.00 39.76 3.57
6434 14024 0.037975 TCTCCGTAGAAACCAACGCC 60.038 55.000 0.00 0.00 37.78 5.68
6445 14035 2.287909 GCATCTAAGCAGGTCTCCGTAG 60.288 54.545 0.00 0.00 0.00 3.51
6446 14036 1.681793 GCATCTAAGCAGGTCTCCGTA 59.318 52.381 0.00 0.00 0.00 4.02
6449 14039 4.615588 ATTAGCATCTAAGCAGGTCTCC 57.384 45.455 0.00 0.00 36.85 3.71
6492 14082 1.286501 TAGCGGCAACTAAAGCATCG 58.713 50.000 1.45 0.00 0.00 3.84
6497 14087 9.807386 GTTAAATATACATAGCGGCAACTAAAG 57.193 33.333 1.45 0.00 0.00 1.85
6509 14099 9.832445 AGTCACACCCTTGTTAAATATACATAG 57.168 33.333 0.00 0.00 31.66 2.23
6516 14106 9.826574 GACATATAGTCACACCCTTGTTAAATA 57.173 33.333 0.00 0.00 46.77 1.40
6517 14107 8.732746 GACATATAGTCACACCCTTGTTAAAT 57.267 34.615 0.00 0.00 46.77 1.40
6607 14197 7.273381 CACAAAAACAAACAAACAAACAACCAA 59.727 29.630 0.00 0.00 0.00 3.67
6608 14198 6.747280 CACAAAAACAAACAAACAAACAACCA 59.253 30.769 0.00 0.00 0.00 3.67
6609 14199 6.747739 ACACAAAAACAAACAAACAAACAACC 59.252 30.769 0.00 0.00 0.00 3.77
6610 14200 7.271438 ACACACAAAAACAAACAAACAAACAAC 59.729 29.630 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.