Multiple sequence alignment - TraesCS4D01G265800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G265800 chr4D 100.000 4594 0 0 1 4594 435662371 435657778 0.000000e+00 8484.0
1 TraesCS4D01G265800 chr4D 84.881 463 54 11 2943 3390 506937823 506938284 1.950000e-123 453.0
2 TraesCS4D01G265800 chr4D 82.677 508 57 23 985 1465 506934785 506935288 5.500000e-114 422.0
3 TraesCS4D01G265800 chr4D 95.294 170 8 0 476 645 374834180 374834011 2.110000e-68 270.0
4 TraesCS4D01G265800 chr4B 93.463 1132 41 20 651 1756 537372325 537371201 0.000000e+00 1650.0
5 TraesCS4D01G265800 chr4B 88.754 907 69 15 2878 3762 537368284 537367389 0.000000e+00 1079.0
6 TraesCS4D01G265800 chr4B 92.769 567 36 3 1777 2343 537371035 537370474 0.000000e+00 815.0
7 TraesCS4D01G265800 chr4B 85.560 464 49 12 2943 3390 664194894 664194433 1.940000e-128 470.0
8 TraesCS4D01G265800 chr4B 87.725 334 29 10 2513 2840 537368609 537368282 3.350000e-101 379.0
9 TraesCS4D01G265800 chr4B 84.987 373 37 6 4154 4526 537366411 537366058 1.220000e-95 361.0
10 TraesCS4D01G265800 chr4B 82.803 314 30 7 1184 1495 664200102 664199811 4.560000e-65 259.0
11 TraesCS4D01G265800 chr4B 86.829 205 18 2 270 474 537374695 537374500 2.150000e-53 220.0
12 TraesCS4D01G265800 chr4B 91.304 161 13 1 3896 4055 537367192 537367032 7.740000e-53 219.0
13 TraesCS4D01G265800 chr4B 82.550 149 11 10 985 1118 664200391 664200243 2.900000e-22 117.0
14 TraesCS4D01G265800 chr4A 93.606 954 46 8 648 1593 32116060 32117006 0.000000e+00 1410.0
15 TraesCS4D01G265800 chr4A 87.861 832 51 19 2878 3681 32118702 32119511 0.000000e+00 931.0
16 TraesCS4D01G265800 chr4A 89.902 713 49 10 3896 4594 37040148 37039445 0.000000e+00 896.0
17 TraesCS4D01G265800 chr4A 92.522 575 28 5 1775 2343 32117649 32118214 0.000000e+00 809.0
18 TraesCS4D01G265800 chr4A 87.893 413 36 8 2440 2840 32118294 32118704 1.500000e-129 473.0
19 TraesCS4D01G265800 chr4A 86.891 267 26 7 1 266 652104881 652104623 1.620000e-74 291.0
20 TraesCS4D01G265800 chr4A 86.792 265 22 6 1 264 697375994 697376246 2.710000e-72 283.0
21 TraesCS4D01G265800 chr4A 83.521 267 28 10 1 266 597322636 597322385 7.680000e-58 235.0
22 TraesCS4D01G265800 chr4A 92.258 155 12 0 270 424 32115407 32115561 2.150000e-53 220.0
23 TraesCS4D01G265800 chr4A 90.152 132 5 5 3750 3875 37040263 37040134 1.020000e-36 165.0
24 TraesCS4D01G265800 chr4A 88.750 80 9 0 3683 3762 37040425 37040346 1.050000e-16 99.0
25 TraesCS4D01G265800 chr5A 83.457 538 53 25 985 1494 703381904 703382433 6.960000e-128 468.0
26 TraesCS4D01G265800 chr5A 84.926 471 47 16 2943 3390 703384674 703385143 5.420000e-124 455.0
27 TraesCS4D01G265800 chr6A 89.474 266 21 5 1 264 483545886 483545626 3.430000e-86 329.0
28 TraesCS4D01G265800 chr6A 86.296 270 24 10 1 268 480196418 480196676 9.730000e-72 281.0
29 TraesCS4D01G265800 chr6A 85.000 240 24 6 16 254 478304004 478304232 2.760000e-57 233.0
30 TraesCS4D01G265800 chr6A 77.934 213 37 6 1232 1436 606076112 606076322 1.740000e-24 124.0
31 TraesCS4D01G265800 chr7B 86.268 284 34 4 1186 1464 513729521 513729238 2.080000e-78 303.0
32 TraesCS4D01G265800 chr7B 85.778 225 32 0 2986 3210 719078571 719078795 5.940000e-59 239.0
33 TraesCS4D01G265800 chr7B 81.022 274 43 6 1185 1450 719076164 719076436 4.660000e-50 209.0
34 TraesCS4D01G265800 chr7B 80.233 258 47 4 2090 2345 513728485 513728230 1.690000e-44 191.0
35 TraesCS4D01G265800 chr7B 91.803 61 5 0 1055 1115 719076013 719076073 8.190000e-13 86.1
36 TraesCS4D01G265800 chr7D 87.640 267 19 7 1 266 582562606 582562353 9.660000e-77 298.0
37 TraesCS4D01G265800 chr7D 87.218 266 27 5 4 268 52008460 52008201 3.480000e-76 296.0
38 TraesCS4D01G265800 chr7D 85.766 274 39 0 1191 1464 486062083 486061810 1.620000e-74 291.0
39 TraesCS4D01G265800 chr7D 86.222 225 31 0 2986 3210 620927149 620927373 1.280000e-60 244.0
40 TraesCS4D01G265800 chr7D 80.545 257 42 5 1201 1450 620924959 620925214 1.690000e-44 191.0
41 TraesCS4D01G265800 chr7D 79.070 258 50 4 2090 2345 486060974 486060719 1.700000e-39 174.0
42 TraesCS4D01G265800 chr7D 86.667 135 18 0 2684 2818 620926975 620927109 2.860000e-32 150.0
43 TraesCS4D01G265800 chr7D 93.443 61 1 3 206 266 582667737 582667680 2.280000e-13 87.9
44 TraesCS4D01G265800 chr1D 87.547 265 21 6 1 264 463982468 463982721 3.480000e-76 296.0
45 TraesCS4D01G265800 chr1D 94.767 172 9 0 476 647 434389881 434389710 7.580000e-68 268.0
46 TraesCS4D01G265800 chr1D 93.750 176 11 0 473 648 297155802 297155977 9.800000e-67 265.0
47 TraesCS4D01G265800 chr2D 86.517 267 24 4 1 266 366055959 366056214 2.710000e-72 283.0
48 TraesCS4D01G265800 chr6D 95.402 174 8 0 476 649 447736850 447737023 1.260000e-70 278.0
49 TraesCS4D01G265800 chr6D 94.767 172 9 0 476 647 470664639 470664468 7.580000e-68 268.0
50 TraesCS4D01G265800 chr3D 94.767 172 9 0 476 647 587946833 587946662 7.580000e-68 268.0
51 TraesCS4D01G265800 chr3D 92.513 187 11 3 465 649 428139675 428139860 9.800000e-67 265.0
52 TraesCS4D01G265800 chr1A 85.606 264 27 10 1 263 588914587 588914334 2.720000e-67 267.0
53 TraesCS4D01G265800 chr5B 93.785 177 10 1 472 647 346616341 346616165 9.800000e-67 265.0
54 TraesCS4D01G265800 chr5B 91.579 190 16 0 467 656 363665293 363665482 3.520000e-66 263.0
55 TraesCS4D01G265800 chr7A 87.556 225 28 0 2986 3210 716256171 716255947 1.270000e-65 261.0
56 TraesCS4D01G265800 chr7A 79.845 258 48 4 2090 2345 554479940 554479685 7.850000e-43 185.0
57 TraesCS4D01G265800 chr7A 79.377 257 45 5 1201 1450 716258521 716258266 1.700000e-39 174.0
58 TraesCS4D01G265800 chr7A 85.185 135 20 0 2684 2818 716256345 716256211 6.200000e-29 139.0
59 TraesCS4D01G265800 chr7A 89.474 76 5 2 1046 1118 554481096 554481021 4.890000e-15 93.5
60 TraesCS4D01G265800 chr3B 76.336 524 92 17 2083 2601 800751696 800752192 7.630000e-63 252.0
61 TraesCS4D01G265800 chr3B 76.000 525 94 17 2083 2601 800710953 800711451 4.590000e-60 243.0
62 TraesCS4D01G265800 chr6B 85.714 56 8 0 1931 1986 700615244 700615299 4.960000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G265800 chr4D 435657778 435662371 4593 True 8484.000000 8484 100.000000 1 4594 1 chr4D.!!$R2 4593
1 TraesCS4D01G265800 chr4D 506934785 506938284 3499 False 437.500000 453 83.779000 985 3390 2 chr4D.!!$F1 2405
2 TraesCS4D01G265800 chr4B 537366058 537374695 8637 True 674.714286 1650 89.404429 270 4526 7 chr4B.!!$R2 4256
3 TraesCS4D01G265800 chr4A 32115407 32119511 4104 False 768.600000 1410 90.828000 270 3681 5 chr4A.!!$F2 3411
4 TraesCS4D01G265800 chr4A 37039445 37040425 980 True 386.666667 896 89.601333 3683 4594 3 chr4A.!!$R3 911
5 TraesCS4D01G265800 chr5A 703381904 703385143 3239 False 461.500000 468 84.191500 985 3390 2 chr5A.!!$F1 2405
6 TraesCS4D01G265800 chr7B 513728230 513729521 1291 True 247.000000 303 83.250500 1186 2345 2 chr7B.!!$R1 1159
7 TraesCS4D01G265800 chr7D 486060719 486062083 1364 True 232.500000 291 82.418000 1191 2345 2 chr7D.!!$R4 1154

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 227 0.035056 CGCCCTTCCTCCTCAATGTT 60.035 55.000 0.00 0.00 0.0 2.71 F
1209 3727 0.036732 GTGTGGTTGCAGGGATCTCA 59.963 55.000 0.00 0.00 0.0 3.27 F
1780 5447 0.168788 GGCGGTGTGATGTTGTGATG 59.831 55.000 0.00 0.00 0.0 3.07 F
1781 5448 0.874390 GCGGTGTGATGTTGTGATGT 59.126 50.000 0.00 0.00 0.0 3.06 F
2366 7078 1.001633 ACGTACCAAACCTACCTGCAG 59.998 52.381 6.78 6.78 0.0 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1761 5428 0.168788 CATCACAACATCACACCGCC 59.831 55.000 0.00 0.00 0.00 6.13 R
2369 7081 0.313672 TGACGGAAAAATGGCAGTGC 59.686 50.000 6.55 6.55 0.00 4.40 R
2677 9137 0.670854 GAGAACCTTCCACGCCTGAC 60.671 60.000 0.00 0.00 0.00 3.51 R
2798 9258 1.143620 GTAGCCTCTCCTGCTGCTG 59.856 63.158 0.00 0.00 39.91 4.41 R
4296 11425 0.250901 ACAATCCGCTTGGCTTCAGT 60.251 50.000 1.74 0.00 39.30 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.722700 GGCAAGGCTGAAGCGGGA 62.723 66.667 0.00 0.00 43.26 5.14
19 20 3.130160 GCAAGGCTGAAGCGGGAG 61.130 66.667 0.00 0.00 43.26 4.30
34 35 4.459089 GAGCAGGACAGGGCGGTC 62.459 72.222 0.00 0.00 37.06 4.79
45 46 4.137872 GGCGGTCCGTCGGATGAA 62.138 66.667 18.75 0.00 32.73 2.57
46 47 2.582498 GCGGTCCGTCGGATGAAG 60.582 66.667 18.75 10.20 32.73 3.02
47 48 2.104331 CGGTCCGTCGGATGAAGG 59.896 66.667 18.75 1.55 44.24 3.46
48 49 2.499685 GGTCCGTCGGATGAAGGG 59.500 66.667 18.75 0.00 43.21 3.95
49 50 2.056223 GGTCCGTCGGATGAAGGGA 61.056 63.158 18.75 0.00 43.21 4.20
50 51 1.141234 GTCCGTCGGATGAAGGGAC 59.859 63.158 18.75 0.00 43.21 4.46
51 52 1.000019 TCCGTCGGATGAAGGGACT 60.000 57.895 10.71 0.00 43.21 3.85
52 53 1.035932 TCCGTCGGATGAAGGGACTC 61.036 60.000 10.71 0.00 43.21 3.36
53 54 1.320344 CCGTCGGATGAAGGGACTCA 61.320 60.000 4.91 0.00 38.49 3.41
54 55 0.747255 CGTCGGATGAAGGGACTCAT 59.253 55.000 0.00 0.00 38.49 2.90
55 56 1.269309 CGTCGGATGAAGGGACTCATC 60.269 57.143 5.23 5.23 38.49 2.92
56 57 1.032794 TCGGATGAAGGGACTCATCG 58.967 55.000 7.33 4.17 40.94 3.84
57 58 0.747255 CGGATGAAGGGACTCATCGT 59.253 55.000 7.33 0.00 40.94 3.73
58 59 1.269309 CGGATGAAGGGACTCATCGTC 60.269 57.143 7.33 0.00 40.94 4.20
66 67 3.082165 GACTCATCGTCCTCTCCGA 57.918 57.895 0.00 0.00 36.62 4.55
67 68 0.658897 GACTCATCGTCCTCTCCGAC 59.341 60.000 0.00 0.00 37.12 4.79
68 69 0.253610 ACTCATCGTCCTCTCCGACT 59.746 55.000 0.00 0.00 37.12 4.18
69 70 0.941542 CTCATCGTCCTCTCCGACTC 59.058 60.000 0.00 0.00 37.12 3.36
70 71 0.464013 TCATCGTCCTCTCCGACTCC 60.464 60.000 0.00 0.00 37.12 3.85
71 72 1.524165 ATCGTCCTCTCCGACTCCG 60.524 63.158 0.00 0.00 37.12 4.63
72 73 1.969200 ATCGTCCTCTCCGACTCCGA 61.969 60.000 0.00 0.00 37.12 4.55
73 74 2.462782 CGTCCTCTCCGACTCCGAC 61.463 68.421 0.00 0.00 38.22 4.79
74 75 1.078285 GTCCTCTCCGACTCCGACT 60.078 63.158 0.00 0.00 38.22 4.18
75 76 0.677414 GTCCTCTCCGACTCCGACTT 60.677 60.000 0.00 0.00 38.22 3.01
76 77 0.392729 TCCTCTCCGACTCCGACTTC 60.393 60.000 0.00 0.00 38.22 3.01
77 78 0.677098 CCTCTCCGACTCCGACTTCA 60.677 60.000 0.00 0.00 38.22 3.02
78 79 1.166129 CTCTCCGACTCCGACTTCAA 58.834 55.000 0.00 0.00 38.22 2.69
79 80 0.879765 TCTCCGACTCCGACTTCAAC 59.120 55.000 0.00 0.00 38.22 3.18
80 81 0.454620 CTCCGACTCCGACTTCAACG 60.455 60.000 0.00 0.00 38.22 4.10
81 82 0.886043 TCCGACTCCGACTTCAACGA 60.886 55.000 0.00 0.00 38.22 3.85
82 83 0.728466 CCGACTCCGACTTCAACGAC 60.728 60.000 0.00 0.00 38.22 4.34
83 84 1.058590 CGACTCCGACTTCAACGACG 61.059 60.000 0.00 0.00 38.22 5.12
84 85 0.728466 GACTCCGACTTCAACGACGG 60.728 60.000 0.00 0.00 45.61 4.79
85 86 2.049802 TCCGACTTCAACGACGGC 60.050 61.111 0.00 0.00 44.19 5.68
86 87 3.467119 CCGACTTCAACGACGGCG 61.467 66.667 10.39 10.39 44.79 6.46
87 88 2.427905 CGACTTCAACGACGGCGA 60.428 61.111 22.49 0.00 34.14 5.54
88 89 2.704193 CGACTTCAACGACGGCGAC 61.704 63.158 22.49 6.59 34.14 5.19
89 90 1.659335 GACTTCAACGACGGCGACA 60.659 57.895 22.49 0.00 41.64 4.35
90 91 1.606350 GACTTCAACGACGGCGACAG 61.606 60.000 22.49 9.82 41.64 3.51
91 92 3.000080 CTTCAACGACGGCGACAGC 62.000 63.158 22.49 0.00 41.64 4.40
92 93 3.493830 TTCAACGACGGCGACAGCT 62.494 57.895 22.49 0.00 44.37 4.24
93 94 3.470567 CAACGACGGCGACAGCTC 61.471 66.667 22.49 0.00 44.37 4.09
94 95 4.719369 AACGACGGCGACAGCTCC 62.719 66.667 22.49 0.00 44.37 4.70
99 100 4.803426 CGGCGACAGCTCCACCTC 62.803 72.222 0.00 0.00 44.37 3.85
100 101 4.459089 GGCGACAGCTCCACCTCC 62.459 72.222 0.00 0.00 44.37 4.30
101 102 3.386237 GCGACAGCTCCACCTCCT 61.386 66.667 0.00 0.00 41.01 3.69
102 103 2.888863 CGACAGCTCCACCTCCTC 59.111 66.667 0.00 0.00 0.00 3.71
103 104 2.888863 GACAGCTCCACCTCCTCG 59.111 66.667 0.00 0.00 0.00 4.63
104 105 1.979693 GACAGCTCCACCTCCTCGT 60.980 63.158 0.00 0.00 0.00 4.18
105 106 1.939769 GACAGCTCCACCTCCTCGTC 61.940 65.000 0.00 0.00 0.00 4.20
106 107 2.363147 AGCTCCACCTCCTCGTCC 60.363 66.667 0.00 0.00 0.00 4.79
107 108 3.827898 GCTCCACCTCCTCGTCCG 61.828 72.222 0.00 0.00 0.00 4.79
108 109 2.045242 CTCCACCTCCTCGTCCGA 60.045 66.667 0.00 0.00 0.00 4.55
109 110 1.454111 CTCCACCTCCTCGTCCGAT 60.454 63.158 0.00 0.00 0.00 4.18
110 111 1.729470 CTCCACCTCCTCGTCCGATG 61.729 65.000 0.00 0.00 0.00 3.84
111 112 1.753078 CCACCTCCTCGTCCGATGA 60.753 63.158 0.00 0.00 0.00 2.92
112 113 1.433879 CACCTCCTCGTCCGATGAC 59.566 63.158 0.00 0.00 38.18 3.06
113 114 1.753463 ACCTCCTCGTCCGATGACC 60.753 63.158 0.00 0.00 38.32 4.02
114 115 1.753078 CCTCCTCGTCCGATGACCA 60.753 63.158 0.00 0.00 38.32 4.02
115 116 1.320344 CCTCCTCGTCCGATGACCAA 61.320 60.000 0.00 0.00 38.32 3.67
116 117 0.101399 CTCCTCGTCCGATGACCAAG 59.899 60.000 0.00 0.00 38.32 3.61
117 118 0.323087 TCCTCGTCCGATGACCAAGA 60.323 55.000 0.00 0.00 38.32 3.02
118 119 0.179134 CCTCGTCCGATGACCAAGAC 60.179 60.000 0.00 0.00 38.32 3.01
119 120 0.179134 CTCGTCCGATGACCAAGACC 60.179 60.000 0.00 0.00 38.32 3.85
120 121 1.153628 CGTCCGATGACCAAGACCC 60.154 63.158 0.00 0.00 38.32 4.46
121 122 1.605058 CGTCCGATGACCAAGACCCT 61.605 60.000 0.00 0.00 38.32 4.34
122 123 0.175989 GTCCGATGACCAAGACCCTC 59.824 60.000 0.00 0.00 35.34 4.30
123 124 0.976073 TCCGATGACCAAGACCCTCC 60.976 60.000 0.00 0.00 0.00 4.30
124 125 1.264749 CCGATGACCAAGACCCTCCA 61.265 60.000 0.00 0.00 0.00 3.86
125 126 0.108138 CGATGACCAAGACCCTCCAC 60.108 60.000 0.00 0.00 0.00 4.02
126 127 0.253327 GATGACCAAGACCCTCCACC 59.747 60.000 0.00 0.00 0.00 4.61
127 128 0.475632 ATGACCAAGACCCTCCACCA 60.476 55.000 0.00 0.00 0.00 4.17
128 129 1.127567 TGACCAAGACCCTCCACCAG 61.128 60.000 0.00 0.00 0.00 4.00
129 130 2.352805 CCAAGACCCTCCACCAGC 59.647 66.667 0.00 0.00 0.00 4.85
130 131 2.352805 CAAGACCCTCCACCAGCC 59.647 66.667 0.00 0.00 0.00 4.85
131 132 3.322466 AAGACCCTCCACCAGCCG 61.322 66.667 0.00 0.00 0.00 5.52
142 143 4.814294 CCAGCCGCGGACACCTAC 62.814 72.222 33.48 9.31 0.00 3.18
143 144 4.063967 CAGCCGCGGACACCTACA 62.064 66.667 33.48 0.00 0.00 2.74
144 145 3.760035 AGCCGCGGACACCTACAG 61.760 66.667 33.48 0.00 0.00 2.74
146 147 3.760035 CCGCGGACACCTACAGCT 61.760 66.667 24.07 0.00 0.00 4.24
147 148 2.507102 CGCGGACACCTACAGCTG 60.507 66.667 13.48 13.48 0.00 4.24
148 149 2.815647 GCGGACACCTACAGCTGC 60.816 66.667 15.27 0.00 0.00 5.25
149 150 2.507102 CGGACACCTACAGCTGCG 60.507 66.667 15.27 5.00 0.00 5.18
150 151 2.815647 GGACACCTACAGCTGCGC 60.816 66.667 15.27 0.00 0.00 6.09
151 152 2.815647 GACACCTACAGCTGCGCC 60.816 66.667 15.27 0.00 0.00 6.53
152 153 4.742201 ACACCTACAGCTGCGCCG 62.742 66.667 15.27 0.00 0.00 6.46
181 182 2.282180 GCAAAGGCCCAACGAGGA 60.282 61.111 0.00 0.00 41.22 3.71
182 183 1.901464 GCAAAGGCCCAACGAGGAA 60.901 57.895 0.00 0.00 41.22 3.36
183 184 1.866853 GCAAAGGCCCAACGAGGAAG 61.867 60.000 0.00 0.00 41.22 3.46
184 185 0.537371 CAAAGGCCCAACGAGGAAGT 60.537 55.000 0.00 0.00 41.22 3.01
185 186 1.061546 AAAGGCCCAACGAGGAAGTA 58.938 50.000 0.00 0.00 41.22 2.24
186 187 0.613777 AAGGCCCAACGAGGAAGTAG 59.386 55.000 0.00 0.00 41.22 2.57
187 188 0.544595 AGGCCCAACGAGGAAGTAGT 60.545 55.000 0.00 0.00 41.22 2.73
188 189 0.391263 GGCCCAACGAGGAAGTAGTG 60.391 60.000 0.00 0.00 41.22 2.74
189 190 0.606604 GCCCAACGAGGAAGTAGTGA 59.393 55.000 0.00 0.00 41.22 3.41
190 191 1.207329 GCCCAACGAGGAAGTAGTGAT 59.793 52.381 0.00 0.00 41.22 3.06
191 192 2.354805 GCCCAACGAGGAAGTAGTGATT 60.355 50.000 0.00 0.00 41.22 2.57
192 193 3.522553 CCCAACGAGGAAGTAGTGATTC 58.477 50.000 0.00 0.00 41.22 2.52
193 194 3.195825 CCCAACGAGGAAGTAGTGATTCT 59.804 47.826 0.00 0.00 41.22 2.40
194 195 4.177026 CCAACGAGGAAGTAGTGATTCTG 58.823 47.826 0.00 0.00 41.22 3.02
195 196 3.512033 ACGAGGAAGTAGTGATTCTGC 57.488 47.619 0.00 0.00 0.00 4.26
196 197 2.166664 ACGAGGAAGTAGTGATTCTGCC 59.833 50.000 0.00 0.00 0.00 4.85
197 198 2.482142 CGAGGAAGTAGTGATTCTGCCC 60.482 54.545 0.00 0.00 0.00 5.36
198 199 2.501723 GAGGAAGTAGTGATTCTGCCCA 59.498 50.000 0.00 0.00 0.00 5.36
199 200 3.118531 AGGAAGTAGTGATTCTGCCCAT 58.881 45.455 0.00 0.00 0.00 4.00
200 201 3.135530 AGGAAGTAGTGATTCTGCCCATC 59.864 47.826 0.00 0.00 0.00 3.51
201 202 3.471680 GAAGTAGTGATTCTGCCCATCC 58.528 50.000 0.00 0.00 0.00 3.51
202 203 1.771255 AGTAGTGATTCTGCCCATCCC 59.229 52.381 0.00 0.00 0.00 3.85
203 204 1.140312 TAGTGATTCTGCCCATCCCC 58.860 55.000 0.00 0.00 0.00 4.81
204 205 0.625683 AGTGATTCTGCCCATCCCCT 60.626 55.000 0.00 0.00 0.00 4.79
205 206 0.179006 GTGATTCTGCCCATCCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
206 207 1.355718 TGATTCTGCCCATCCCCTCC 61.356 60.000 0.00 0.00 0.00 4.30
207 208 2.074113 GATTCTGCCCATCCCCTCCC 62.074 65.000 0.00 0.00 0.00 4.30
214 215 3.878667 CATCCCCTCCCGCCCTTC 61.879 72.222 0.00 0.00 0.00 3.46
219 220 4.806339 CCTCCCGCCCTTCCTCCT 62.806 72.222 0.00 0.00 0.00 3.69
220 221 3.157949 CTCCCGCCCTTCCTCCTC 61.158 72.222 0.00 0.00 0.00 3.71
221 222 3.984186 CTCCCGCCCTTCCTCCTCA 62.984 68.421 0.00 0.00 0.00 3.86
222 223 3.009115 CCCGCCCTTCCTCCTCAA 61.009 66.667 0.00 0.00 0.00 3.02
223 224 2.378634 CCCGCCCTTCCTCCTCAAT 61.379 63.158 0.00 0.00 0.00 2.57
224 225 1.153086 CCGCCCTTCCTCCTCAATG 60.153 63.158 0.00 0.00 0.00 2.82
225 226 1.604378 CGCCCTTCCTCCTCAATGT 59.396 57.895 0.00 0.00 0.00 2.71
226 227 0.035056 CGCCCTTCCTCCTCAATGTT 60.035 55.000 0.00 0.00 0.00 2.71
227 228 1.614317 CGCCCTTCCTCCTCAATGTTT 60.614 52.381 0.00 0.00 0.00 2.83
228 229 2.355716 CGCCCTTCCTCCTCAATGTTTA 60.356 50.000 0.00 0.00 0.00 2.01
229 230 3.685550 CGCCCTTCCTCCTCAATGTTTAT 60.686 47.826 0.00 0.00 0.00 1.40
230 231 4.444306 CGCCCTTCCTCCTCAATGTTTATA 60.444 45.833 0.00 0.00 0.00 0.98
231 232 5.635120 GCCCTTCCTCCTCAATGTTTATAT 58.365 41.667 0.00 0.00 0.00 0.86
232 233 5.707764 GCCCTTCCTCCTCAATGTTTATATC 59.292 44.000 0.00 0.00 0.00 1.63
233 234 6.466470 GCCCTTCCTCCTCAATGTTTATATCT 60.466 42.308 0.00 0.00 0.00 1.98
234 235 7.521669 CCCTTCCTCCTCAATGTTTATATCTT 58.478 38.462 0.00 0.00 0.00 2.40
235 236 8.001292 CCCTTCCTCCTCAATGTTTATATCTTT 58.999 37.037 0.00 0.00 0.00 2.52
236 237 9.413734 CCTTCCTCCTCAATGTTTATATCTTTT 57.586 33.333 0.00 0.00 0.00 2.27
316 317 3.064545 CACCATTGAAGAGAAGAATCCGC 59.935 47.826 0.00 0.00 0.00 5.54
326 327 0.179045 AAGAATCCGCGGCTGCTATT 60.179 50.000 23.51 15.06 39.65 1.73
347 348 0.107116 GAGGAGCAGACTCGGGACTA 60.107 60.000 0.00 0.00 44.48 2.59
374 375 4.097286 GTCAACAGGGAAAAACAAGCAGTA 59.903 41.667 0.00 0.00 0.00 2.74
377 378 4.215109 ACAGGGAAAAACAAGCAGTACAT 58.785 39.130 0.00 0.00 0.00 2.29
420 421 3.726517 CAAAGTGCCGGCGACCAG 61.727 66.667 23.90 7.86 0.00 4.00
448 914 7.212976 TGGCAGCATCTACATTTTTAACAAAA 58.787 30.769 0.00 0.00 36.30 2.44
468 934 7.602753 ACAAAAATGCTAGATGGGTCTTAAAC 58.397 34.615 0.00 0.00 35.87 2.01
469 935 7.451566 ACAAAAATGCTAGATGGGTCTTAAACT 59.548 33.333 0.00 0.00 35.87 2.66
470 936 7.631717 AAAATGCTAGATGGGTCTTAAACTC 57.368 36.000 0.00 0.00 35.87 3.01
472 938 6.567602 ATGCTAGATGGGTCTTAAACTCTT 57.432 37.500 0.00 0.00 35.87 2.85
473 939 7.676683 ATGCTAGATGGGTCTTAAACTCTTA 57.323 36.000 0.00 0.00 35.87 2.10
474 940 7.676683 TGCTAGATGGGTCTTAAACTCTTAT 57.323 36.000 0.00 0.00 35.87 1.73
475 941 8.777578 TGCTAGATGGGTCTTAAACTCTTATA 57.222 34.615 0.00 0.00 35.87 0.98
477 943 8.862085 GCTAGATGGGTCTTAAACTCTTATAGT 58.138 37.037 0.00 0.00 36.52 2.12
492 958 7.324178 ACTCTTATAGTTTTGCGAGAACTCAT 58.676 34.615 2.90 0.67 38.28 2.90
493 959 7.489757 ACTCTTATAGTTTTGCGAGAACTCATC 59.510 37.037 2.90 0.00 38.28 2.92
495 961 8.683615 TCTTATAGTTTTGCGAGAACTCATCTA 58.316 33.333 2.90 0.00 38.96 1.98
497 963 5.392767 AGTTTTGCGAGAACTCATCTAGA 57.607 39.130 0.00 0.00 38.96 2.43
498 964 5.971763 AGTTTTGCGAGAACTCATCTAGAT 58.028 37.500 0.00 0.00 38.96 1.98
503 969 6.154203 TGCGAGAACTCATCTAGATGAAAT 57.846 37.500 30.28 22.91 46.10 2.17
505 971 7.890515 TGCGAGAACTCATCTAGATGAAATAT 58.109 34.615 30.28 20.79 46.10 1.28
506 972 9.014297 TGCGAGAACTCATCTAGATGAAATATA 57.986 33.333 30.28 12.04 46.10 0.86
507 973 9.847706 GCGAGAACTCATCTAGATGAAATATAA 57.152 33.333 30.28 11.40 46.10 0.98
524 990 9.699410 TGAAATATAATTTGGTCTCATTCACCT 57.301 29.630 0.00 0.00 34.66 4.00
532 998 7.391148 TTTGGTCTCATTCACCTTTTATAGC 57.609 36.000 0.00 0.00 34.66 2.97
534 1000 5.045213 TGGTCTCATTCACCTTTTATAGCCA 60.045 40.000 0.00 0.00 34.66 4.75
535 1001 6.064717 GGTCTCATTCACCTTTTATAGCCAT 58.935 40.000 0.00 0.00 0.00 4.40
536 1002 6.547510 GGTCTCATTCACCTTTTATAGCCATT 59.452 38.462 0.00 0.00 0.00 3.16
537 1003 7.719633 GGTCTCATTCACCTTTTATAGCCATTA 59.280 37.037 0.00 0.00 0.00 1.90
538 1004 9.120538 GTCTCATTCACCTTTTATAGCCATTAA 57.879 33.333 0.00 0.00 0.00 1.40
544 1010 8.815565 TCACCTTTTATAGCCATTAAATGTGA 57.184 30.769 9.38 9.38 36.67 3.58
545 1011 9.420118 TCACCTTTTATAGCCATTAAATGTGAT 57.580 29.630 9.38 0.00 35.39 3.06
548 1014 8.362639 CCTTTTATAGCCATTAAATGTGATGCT 58.637 33.333 0.00 0.00 0.00 3.79
554 1020 9.964354 ATAGCCATTAAATGTGATGCTATAAGA 57.036 29.630 0.00 0.00 0.00 2.10
555 1021 8.874744 AGCCATTAAATGTGATGCTATAAGAT 57.125 30.769 0.00 0.00 0.00 2.40
556 1022 8.737175 AGCCATTAAATGTGATGCTATAAGATG 58.263 33.333 0.00 0.00 0.00 2.90
557 1023 7.487189 GCCATTAAATGTGATGCTATAAGATGC 59.513 37.037 0.00 0.00 0.00 3.91
558 1024 7.695201 CCATTAAATGTGATGCTATAAGATGCG 59.305 37.037 0.00 0.00 0.00 4.73
559 1025 7.728847 TTAAATGTGATGCTATAAGATGCGT 57.271 32.000 0.00 0.00 0.00 5.24
560 1026 5.602458 AATGTGATGCTATAAGATGCGTG 57.398 39.130 0.00 0.00 0.00 5.34
561 1027 4.058721 TGTGATGCTATAAGATGCGTGT 57.941 40.909 0.00 0.00 0.00 4.49
564 1354 3.803778 TGATGCTATAAGATGCGTGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
569 1359 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
572 1362 2.484631 GATGCGTGTGTGCTGACGTG 62.485 60.000 0.00 0.00 37.89 4.49
575 1365 1.664649 CGTGTGTGCTGACGTGGAT 60.665 57.895 0.00 0.00 0.00 3.41
576 1366 1.221466 CGTGTGTGCTGACGTGGATT 61.221 55.000 0.00 0.00 0.00 3.01
579 1369 1.069358 TGTGTGCTGACGTGGATTGTA 59.931 47.619 0.00 0.00 0.00 2.41
580 1370 2.289382 TGTGTGCTGACGTGGATTGTAT 60.289 45.455 0.00 0.00 0.00 2.29
581 1371 2.348666 GTGTGCTGACGTGGATTGTATC 59.651 50.000 0.00 0.00 0.00 2.24
587 1377 4.154195 GCTGACGTGGATTGTATCTGTTTT 59.846 41.667 0.00 0.00 0.00 2.43
588 1378 5.334879 GCTGACGTGGATTGTATCTGTTTTT 60.335 40.000 0.00 0.00 0.00 1.94
589 1379 5.996219 TGACGTGGATTGTATCTGTTTTTG 58.004 37.500 0.00 0.00 0.00 2.44
592 1382 6.435428 ACGTGGATTGTATCTGTTTTTGTTC 58.565 36.000 0.00 0.00 0.00 3.18
597 1387 8.352201 TGGATTGTATCTGTTTTTGTTCTCAAG 58.648 33.333 0.00 0.00 34.88 3.02
598 1388 8.567948 GGATTGTATCTGTTTTTGTTCTCAAGA 58.432 33.333 0.00 0.00 34.88 3.02
600 1390 9.903682 ATTGTATCTGTTTTTGTTCTCAAGATG 57.096 29.630 0.00 0.00 34.88 2.90
601 1391 8.675705 TGTATCTGTTTTTGTTCTCAAGATGA 57.324 30.769 0.00 0.00 34.88 2.92
602 1392 9.119418 TGTATCTGTTTTTGTTCTCAAGATGAA 57.881 29.630 0.00 0.00 34.88 2.57
605 1395 8.224389 TCTGTTTTTGTTCTCAAGATGAATGA 57.776 30.769 0.00 0.00 34.88 2.57
606 1396 8.347771 TCTGTTTTTGTTCTCAAGATGAATGAG 58.652 33.333 0.00 0.00 44.53 2.90
643 1433 6.798427 TCATCTAAATGAGTTCTAGGCACT 57.202 37.500 0.00 0.00 38.74 4.40
645 1435 5.599999 TCTAAATGAGTTCTAGGCACTCC 57.400 43.478 16.20 4.17 40.12 3.85
646 1436 3.636153 AAATGAGTTCTAGGCACTCCC 57.364 47.619 16.20 0.00 40.12 4.30
647 1437 2.254152 ATGAGTTCTAGGCACTCCCA 57.746 50.000 16.20 4.50 40.12 4.37
648 1438 2.024176 TGAGTTCTAGGCACTCCCAA 57.976 50.000 16.20 0.95 40.12 4.12
649 1439 2.334977 TGAGTTCTAGGCACTCCCAAA 58.665 47.619 16.20 0.68 40.12 3.28
911 3375 2.230266 AGAAGAAGACCGAACTCTCTGC 59.770 50.000 0.00 0.00 0.00 4.26
928 3392 1.255667 TGCCCAACTCCTCGACCTAC 61.256 60.000 0.00 0.00 0.00 3.18
965 3438 0.603569 TGTGAGGCGGAGAGAAACTC 59.396 55.000 0.00 0.00 44.24 3.01
1013 3489 4.760047 AGACATGACGCCCACCGC 62.760 66.667 0.00 0.00 41.76 5.68
1015 3491 4.634703 ACATGACGCCCACCGCAA 62.635 61.111 0.00 0.00 41.76 4.85
1138 3652 1.282570 GCACACACCACCATTCACG 59.717 57.895 0.00 0.00 0.00 4.35
1209 3727 0.036732 GTGTGGTTGCAGGGATCTCA 59.963 55.000 0.00 0.00 0.00 3.27
1454 3972 2.159544 CCGAGAACGTCTACAAGGAGAC 60.160 54.545 2.22 2.22 42.13 3.36
1521 4042 3.366476 GCGCTAACTGACGATCTATCCAT 60.366 47.826 0.00 0.00 0.00 3.41
1557 4464 6.704493 AGAAATAACGTATCGGCAACATATGT 59.296 34.615 1.41 1.41 33.85 2.29
1558 4465 6.462073 AATAACGTATCGGCAACATATGTC 57.538 37.500 9.23 0.00 32.35 3.06
1583 4493 7.283127 TCTGTTGGATGGCTTTATGAAGATAAC 59.717 37.037 0.58 0.00 34.71 1.89
1593 4503 8.398665 GGCTTTATGAAGATAACGAAACAGAAT 58.601 33.333 0.58 0.00 34.71 2.40
1658 5324 3.054875 ACGGGGGTTGAAATTAGTACTCC 60.055 47.826 0.00 0.00 0.00 3.85
1662 5328 4.226620 GGGGTTGAAATTAGTACTCCCTCA 59.773 45.833 0.00 0.00 34.63 3.86
1686 5352 3.140623 GGTTTAAGTTTCACGCACCCTA 58.859 45.455 0.00 0.00 0.00 3.53
1694 5360 4.935808 AGTTTCACGCACCCTATTTCTTAG 59.064 41.667 0.00 0.00 0.00 2.18
1720 5387 6.641176 AAAATGAACTTCAAAACGAACCAC 57.359 33.333 0.00 0.00 0.00 4.16
1746 5413 6.337356 CCACCACTTTGTTTGAGTAATTTGT 58.663 36.000 0.00 0.00 0.00 2.83
1757 5424 9.944663 TGTTTGAGTAATTTGTAGACATTTCAC 57.055 29.630 0.00 0.00 0.00 3.18
1760 5427 8.322906 TGAGTAATTTGTAGACATTTCACAGG 57.677 34.615 0.00 0.00 0.00 4.00
1761 5428 7.390440 TGAGTAATTTGTAGACATTTCACAGGG 59.610 37.037 0.00 0.00 0.00 4.45
1762 5429 5.982890 AATTTGTAGACATTTCACAGGGG 57.017 39.130 0.00 0.00 0.00 4.79
1763 5430 2.489938 TGTAGACATTTCACAGGGGC 57.510 50.000 0.00 0.00 0.00 5.80
1764 5431 1.338674 TGTAGACATTTCACAGGGGCG 60.339 52.381 0.00 0.00 0.00 6.13
1765 5432 0.251916 TAGACATTTCACAGGGGCGG 59.748 55.000 0.00 0.00 0.00 6.13
1766 5433 1.303317 GACATTTCACAGGGGCGGT 60.303 57.895 0.00 0.00 0.00 5.68
1767 5434 1.586154 GACATTTCACAGGGGCGGTG 61.586 60.000 0.00 0.00 37.60 4.94
1772 5439 2.747460 CACAGGGGCGGTGTGATG 60.747 66.667 11.34 0.00 46.99 3.07
1773 5440 3.249189 ACAGGGGCGGTGTGATGT 61.249 61.111 0.00 0.00 0.00 3.06
1774 5441 2.034066 CAGGGGCGGTGTGATGTT 59.966 61.111 0.00 0.00 0.00 2.71
1775 5442 2.034066 AGGGGCGGTGTGATGTTG 59.966 61.111 0.00 0.00 0.00 3.33
1776 5443 2.282180 GGGGCGGTGTGATGTTGT 60.282 61.111 0.00 0.00 0.00 3.32
1777 5444 2.625823 GGGGCGGTGTGATGTTGTG 61.626 63.158 0.00 0.00 0.00 3.33
1778 5445 1.599518 GGGCGGTGTGATGTTGTGA 60.600 57.895 0.00 0.00 0.00 3.58
1780 5447 0.168788 GGCGGTGTGATGTTGTGATG 59.831 55.000 0.00 0.00 0.00 3.07
1781 5448 0.874390 GCGGTGTGATGTTGTGATGT 59.126 50.000 0.00 0.00 0.00 3.06
1782 5449 1.135972 GCGGTGTGATGTTGTGATGTC 60.136 52.381 0.00 0.00 0.00 3.06
1783 5450 1.464608 CGGTGTGATGTTGTGATGTCC 59.535 52.381 0.00 0.00 0.00 4.02
1986 6329 1.866925 GCCTCAACAACCAGTACGC 59.133 57.895 0.00 0.00 0.00 4.42
2035 6378 2.152016 GGCCGAGAACTAGCTTGTTTT 58.848 47.619 14.73 9.34 0.00 2.43
2048 6391 9.694137 AACTAGCTTGTTTTAGTTAGTCTACTG 57.306 33.333 7.78 0.00 40.07 2.74
2207 6919 2.683933 TCCCTCTCGCCACCTTCC 60.684 66.667 0.00 0.00 0.00 3.46
2243 6955 1.081906 GTGTACTTCGTCGCCGACA 60.082 57.895 18.40 1.54 44.13 4.35
2303 7015 2.050350 TACCTCGAGGCCGACAAGG 61.050 63.158 31.56 13.08 40.30 3.61
2348 7060 4.092968 GCCTTCAACTCAACAAGGTATACG 59.907 45.833 0.00 0.00 39.23 3.06
2351 7063 6.309737 CCTTCAACTCAACAAGGTATACGTAC 59.690 42.308 0.00 0.00 33.24 3.67
2366 7078 1.001633 ACGTACCAAACCTACCTGCAG 59.998 52.381 6.78 6.78 0.00 4.41
2367 7079 1.001633 CGTACCAAACCTACCTGCAGT 59.998 52.381 13.81 3.45 0.00 4.40
2369 7081 1.981256 ACCAAACCTACCTGCAGTTG 58.019 50.000 13.81 9.13 0.00 3.16
2399 7111 6.401367 GCCATTTTTCCGTCAGAAATTGAATG 60.401 38.462 0.00 0.00 43.93 2.67
2400 7112 6.867816 CCATTTTTCCGTCAGAAATTGAATGA 59.132 34.615 10.46 0.00 43.93 2.57
2401 7113 7.384660 CCATTTTTCCGTCAGAAATTGAATGAA 59.615 33.333 10.46 0.00 43.93 2.57
2407 7119 7.250569 TCCGTCAGAAATTGAATGAATAAAGC 58.749 34.615 0.00 0.00 37.61 3.51
2409 7121 7.703621 CCGTCAGAAATTGAATGAATAAAGCAT 59.296 33.333 0.00 0.00 37.61 3.79
2410 7122 8.529102 CGTCAGAAATTGAATGAATAAAGCATG 58.471 33.333 0.00 0.00 37.61 4.06
2411 7123 8.814235 GTCAGAAATTGAATGAATAAAGCATGG 58.186 33.333 0.00 0.00 37.61 3.66
2412 7124 7.982919 TCAGAAATTGAATGAATAAAGCATGGG 59.017 33.333 0.00 0.00 31.34 4.00
2413 7125 7.767198 CAGAAATTGAATGAATAAAGCATGGGT 59.233 33.333 0.00 0.00 0.00 4.51
2416 7128 7.658525 ATTGAATGAATAAAGCATGGGTGTA 57.341 32.000 0.00 0.00 0.00 2.90
2420 7132 9.194972 TGAATGAATAAAGCATGGGTGTAATAA 57.805 29.630 0.00 0.00 0.00 1.40
2421 7133 9.463443 GAATGAATAAAGCATGGGTGTAATAAC 57.537 33.333 0.00 0.00 0.00 1.89
2422 7134 7.341445 TGAATAAAGCATGGGTGTAATAACC 57.659 36.000 0.00 0.00 39.71 2.85
2424 7136 7.617723 TGAATAAAGCATGGGTGTAATAACCTT 59.382 33.333 0.00 0.00 40.35 3.50
2427 7139 4.929479 AGCATGGGTGTAATAACCTTCAA 58.071 39.130 0.00 0.00 40.35 2.69
2429 7141 5.957774 AGCATGGGTGTAATAACCTTCAATT 59.042 36.000 0.00 0.00 40.35 2.32
2433 7145 6.998802 TGGGTGTAATAACCTTCAATTTTGG 58.001 36.000 0.00 0.00 40.35 3.28
2434 7146 6.555360 TGGGTGTAATAACCTTCAATTTTGGT 59.445 34.615 0.00 0.00 40.35 3.67
2435 7147 6.871492 GGGTGTAATAACCTTCAATTTTGGTG 59.129 38.462 0.00 0.00 40.35 4.17
2436 7148 6.871492 GGTGTAATAACCTTCAATTTTGGTGG 59.129 38.462 0.00 0.00 37.24 4.61
2438 7150 7.597369 GTGTAATAACCTTCAATTTTGGTGGTC 59.403 37.037 8.00 0.00 34.74 4.02
2439 7151 6.739331 AATAACCTTCAATTTTGGTGGTCA 57.261 33.333 8.00 0.00 34.74 4.02
2442 7154 3.244181 ACCTTCAATTTTGGTGGTCATGC 60.244 43.478 0.00 0.00 31.95 4.06
2443 7155 3.244146 CCTTCAATTTTGGTGGTCATGCA 60.244 43.478 0.00 0.00 0.00 3.96
2444 7156 4.563993 CCTTCAATTTTGGTGGTCATGCAT 60.564 41.667 0.00 0.00 0.00 3.96
2463 7178 1.180456 TTGCATTGCAGGTGGTGAGG 61.180 55.000 11.76 0.00 40.61 3.86
2574 9011 1.617947 GGGTCCTGCAGTCCGATCTT 61.618 60.000 13.81 0.00 0.00 2.40
2609 9046 2.095466 CACGACTTCCTGTCAGTCTCTC 60.095 54.545 0.00 0.00 45.60 3.20
2612 9049 3.417101 GACTTCCTGTCAGTCTCTCTCA 58.583 50.000 0.00 0.00 44.73 3.27
2613 9050 3.153919 ACTTCCTGTCAGTCTCTCTCAC 58.846 50.000 0.00 0.00 0.00 3.51
2615 9052 1.425448 TCCTGTCAGTCTCTCTCACCA 59.575 52.381 0.00 0.00 0.00 4.17
2616 9053 2.158460 TCCTGTCAGTCTCTCTCACCAA 60.158 50.000 0.00 0.00 0.00 3.67
2617 9054 2.630098 CCTGTCAGTCTCTCTCACCAAA 59.370 50.000 0.00 0.00 0.00 3.28
2626 9070 6.931281 CAGTCTCTCTCACCAAAATACTTGAA 59.069 38.462 0.00 0.00 0.00 2.69
2627 9071 6.931840 AGTCTCTCTCACCAAAATACTTGAAC 59.068 38.462 0.00 0.00 0.00 3.18
2646 9094 1.134580 ACGATGATCTGCTGGTTCTGG 60.135 52.381 0.00 0.00 0.00 3.86
2662 9110 2.184533 TCTGGGCCGAATTCTGAACTA 58.815 47.619 3.52 0.00 0.00 2.24
2668 9116 4.202223 GGGCCGAATTCTGAACTACTCATA 60.202 45.833 3.52 0.00 32.14 2.15
2671 9119 5.460419 GCCGAATTCTGAACTACTCATACTG 59.540 44.000 3.52 0.00 32.14 2.74
2677 9137 8.939201 ATTCTGAACTACTCATACTGAATGTG 57.061 34.615 0.00 0.00 36.89 3.21
2699 9159 1.079057 GGCGTGGAAGGTTCTCTCC 60.079 63.158 0.00 0.00 0.00 3.71
2798 9258 0.460722 GGGAGTTCTTCCTCTACGCC 59.539 60.000 0.00 0.00 45.98 5.68
2837 9297 4.733165 ACTACGGAGTATGGCAGGTAATA 58.267 43.478 0.00 0.00 44.56 0.98
2840 9300 3.321111 ACGGAGTATGGCAGGTAATACAG 59.679 47.826 0.00 0.00 41.94 2.74
2841 9301 3.321111 CGGAGTATGGCAGGTAATACAGT 59.679 47.826 0.00 0.00 32.69 3.55
2842 9302 4.521639 CGGAGTATGGCAGGTAATACAGTA 59.478 45.833 0.00 0.00 32.69 2.74
2843 9303 5.010314 CGGAGTATGGCAGGTAATACAGTAA 59.990 44.000 0.00 0.00 32.69 2.24
2844 9304 6.221659 GGAGTATGGCAGGTAATACAGTAAC 58.778 44.000 0.00 0.00 32.69 2.50
2846 9306 7.190335 AGTATGGCAGGTAATACAGTAACAA 57.810 36.000 0.00 0.00 32.69 2.83
2847 9307 7.802117 AGTATGGCAGGTAATACAGTAACAAT 58.198 34.615 0.00 0.00 32.69 2.71
2848 9308 7.931948 AGTATGGCAGGTAATACAGTAACAATC 59.068 37.037 0.00 0.00 32.69 2.67
2850 9310 6.717289 TGGCAGGTAATACAGTAACAATCTT 58.283 36.000 0.00 0.00 0.00 2.40
2851 9311 7.172342 TGGCAGGTAATACAGTAACAATCTTT 58.828 34.615 0.00 0.00 0.00 2.52
2875 9335 2.279935 TTTTGCGGGGTCAATACAGT 57.720 45.000 0.00 0.00 0.00 3.55
2876 9336 3.420300 TTTTGCGGGGTCAATACAGTA 57.580 42.857 0.00 0.00 0.00 2.74
2885 9345 6.522054 CGGGGTCAATACAGTAACAATCTAT 58.478 40.000 0.00 0.00 0.00 1.98
2902 9363 6.210385 ACAATCTATAACGATGCTGATCTCCT 59.790 38.462 0.00 0.00 0.00 3.69
2903 9364 6.849085 ATCTATAACGATGCTGATCTCCTT 57.151 37.500 0.00 0.00 0.00 3.36
2905 9366 6.682746 TCTATAACGATGCTGATCTCCTTTC 58.317 40.000 0.00 0.00 0.00 2.62
2913 9375 6.314896 CGATGCTGATCTCCTTTCTAACTTTT 59.685 38.462 0.00 0.00 0.00 2.27
2914 9376 7.148340 CGATGCTGATCTCCTTTCTAACTTTTT 60.148 37.037 0.00 0.00 0.00 1.94
2915 9377 7.206981 TGCTGATCTCCTTTCTAACTTTTTG 57.793 36.000 0.00 0.00 0.00 2.44
2916 9378 6.998074 TGCTGATCTCCTTTCTAACTTTTTGA 59.002 34.615 0.00 0.00 0.00 2.69
3228 9697 1.990060 AGCTCAGGGTGCGTGGTAT 60.990 57.895 0.00 0.00 35.28 2.73
3311 9799 1.348366 TGTGTTACATAGGCACCGGTT 59.652 47.619 2.97 0.00 32.62 4.44
3323 9811 0.330267 CACCGGTTGGGAGGGTTTAT 59.670 55.000 2.97 0.00 40.75 1.40
3329 9817 3.502356 GGTTGGGAGGGTTTATTTCACA 58.498 45.455 0.00 0.00 0.00 3.58
3418 9906 2.470821 ACGACGTCTTATGCCTAATGC 58.529 47.619 14.70 0.00 41.77 3.56
3428 9916 6.094048 GTCTTATGCCTAATGCTGAGTTTCAA 59.906 38.462 0.00 0.00 42.00 2.69
3438 9926 6.882610 ATGCTGAGTTTCAAATGACTTACA 57.117 33.333 0.00 0.00 0.00 2.41
3472 9962 6.710295 TGGCGATAGAACATTTATGCTATTGT 59.290 34.615 0.00 0.00 39.76 2.71
3473 9963 7.017645 GGCGATAGAACATTTATGCTATTGTG 58.982 38.462 0.00 0.00 39.76 3.33
3483 9973 9.926158 ACATTTATGCTATTGTGAATTTTGTGA 57.074 25.926 0.00 0.00 0.00 3.58
3492 9982 4.228317 TGTGAATTTTGTGATCATGCGTG 58.772 39.130 0.00 0.00 0.00 5.34
3695 10200 7.553881 TTATTTCTCATTGTAGGCTAAGCAC 57.446 36.000 0.00 0.00 0.00 4.40
3701 10206 5.750524 TCATTGTAGGCTAAGCACCATAAA 58.249 37.500 0.00 0.00 0.00 1.40
3702 10208 6.364701 TCATTGTAGGCTAAGCACCATAAAT 58.635 36.000 0.00 0.00 0.00 1.40
3724 10230 8.821686 AAATATATGGTGTCTGTTCCAATGAA 57.178 30.769 0.00 0.00 37.27 2.57
3727 10233 5.649782 ATGGTGTCTGTTCCAATGAAATC 57.350 39.130 0.00 0.00 37.27 2.17
3728 10234 4.468713 TGGTGTCTGTTCCAATGAAATCA 58.531 39.130 0.00 0.00 30.79 2.57
3782 10383 7.163001 GACTACATGTCTGCATCTATATGGA 57.837 40.000 0.00 0.00 42.21 3.41
3808 10414 6.800072 ATAAGTTAGCTAGAGCAACCTCTT 57.200 37.500 4.01 4.08 46.16 2.85
3855 10461 4.142138 ACCACGCCATCTTTTTGTGTTAAA 60.142 37.500 0.00 0.00 0.00 1.52
3856 10462 4.987912 CCACGCCATCTTTTTGTGTTAAAT 59.012 37.500 0.00 0.00 0.00 1.40
3857 10463 5.118510 CCACGCCATCTTTTTGTGTTAAATC 59.881 40.000 0.00 0.00 0.00 2.17
3859 10465 6.199908 CACGCCATCTTTTTGTGTTAAATCAA 59.800 34.615 0.00 0.00 0.00 2.57
3860 10466 6.928492 ACGCCATCTTTTTGTGTTAAATCAAT 59.072 30.769 0.00 0.00 0.00 2.57
3861 10467 7.440856 ACGCCATCTTTTTGTGTTAAATCAATT 59.559 29.630 0.00 0.00 0.00 2.32
3862 10468 7.741216 CGCCATCTTTTTGTGTTAAATCAATTG 59.259 33.333 0.00 0.00 0.00 2.32
3863 10469 7.534918 GCCATCTTTTTGTGTTAAATCAATTGC 59.465 33.333 0.00 0.00 0.00 3.56
3864 10470 8.776470 CCATCTTTTTGTGTTAAATCAATTGCT 58.224 29.630 0.00 0.00 0.00 3.91
3865 10471 9.801714 CATCTTTTTGTGTTAAATCAATTGCTC 57.198 29.630 0.00 0.00 0.00 4.26
3866 10472 8.939201 TCTTTTTGTGTTAAATCAATTGCTCA 57.061 26.923 0.00 0.00 0.00 4.26
3867 10473 9.033481 TCTTTTTGTGTTAAATCAATTGCTCAG 57.967 29.630 0.00 0.00 0.00 3.35
3868 10474 8.939201 TTTTTGTGTTAAATCAATTGCTCAGA 57.061 26.923 0.00 0.00 0.00 3.27
3869 10475 7.928908 TTTGTGTTAAATCAATTGCTCAGAC 57.071 32.000 0.00 0.00 0.00 3.51
3870 10476 6.882610 TGTGTTAAATCAATTGCTCAGACT 57.117 33.333 0.00 0.00 0.00 3.24
3871 10477 6.671190 TGTGTTAAATCAATTGCTCAGACTG 58.329 36.000 0.00 0.00 0.00 3.51
3872 10478 6.262944 TGTGTTAAATCAATTGCTCAGACTGT 59.737 34.615 0.00 0.00 0.00 3.55
3873 10479 7.443879 TGTGTTAAATCAATTGCTCAGACTGTA 59.556 33.333 0.00 0.00 0.00 2.74
3874 10480 8.289618 GTGTTAAATCAATTGCTCAGACTGTAA 58.710 33.333 0.00 0.00 0.00 2.41
3875 10481 8.506437 TGTTAAATCAATTGCTCAGACTGTAAG 58.494 33.333 0.00 0.00 42.29 2.34
3876 10482 8.721478 GTTAAATCAATTGCTCAGACTGTAAGA 58.279 33.333 0.00 0.00 37.43 2.10
3877 10483 7.934855 AAATCAATTGCTCAGACTGTAAGAT 57.065 32.000 0.00 0.00 37.43 2.40
3878 10484 7.934855 AATCAATTGCTCAGACTGTAAGATT 57.065 32.000 0.00 2.25 37.43 2.40
3879 10485 6.974932 TCAATTGCTCAGACTGTAAGATTC 57.025 37.500 0.00 0.00 37.43 2.52
3880 10486 6.466812 TCAATTGCTCAGACTGTAAGATTCA 58.533 36.000 0.00 0.00 37.43 2.57
3881 10487 6.936335 TCAATTGCTCAGACTGTAAGATTCAA 59.064 34.615 0.00 0.00 37.43 2.69
3882 10488 7.445096 TCAATTGCTCAGACTGTAAGATTCAAA 59.555 33.333 0.00 0.00 37.43 2.69
3883 10489 7.750229 ATTGCTCAGACTGTAAGATTCAAAA 57.250 32.000 1.59 0.00 37.43 2.44
3884 10490 7.750229 TTGCTCAGACTGTAAGATTCAAAAT 57.250 32.000 1.59 0.00 37.43 1.82
3885 10491 8.846943 TTGCTCAGACTGTAAGATTCAAAATA 57.153 30.769 1.59 0.00 37.43 1.40
3886 10492 8.846943 TGCTCAGACTGTAAGATTCAAAATAA 57.153 30.769 1.59 0.00 37.43 1.40
3887 10493 9.283768 TGCTCAGACTGTAAGATTCAAAATAAA 57.716 29.630 1.59 0.00 37.43 1.40
3920 10526 5.471797 TGTTCAGACTGTAGACTCTTCTGAG 59.528 44.000 1.59 0.00 42.68 3.35
3936 10542 2.965831 TCTGAGGAGTGCTACTTGTGTT 59.034 45.455 0.00 0.00 0.00 3.32
3941 10547 3.627577 AGGAGTGCTACTTGTGTTTTGTG 59.372 43.478 0.00 0.00 0.00 3.33
3992 10599 6.757897 TGAATAAAATCTTGCGTGAATCCT 57.242 33.333 0.00 0.00 0.00 3.24
4060 10667 8.032451 TGATACTCTGTTTATTTCGTGTGATCA 58.968 33.333 0.00 0.00 0.00 2.92
4094 11150 1.829222 TCCAAAGTCTATCCGACCACC 59.171 52.381 0.00 0.00 43.91 4.61
4100 11156 0.458669 TCTATCCGACCACCGAAAGC 59.541 55.000 0.00 0.00 41.76 3.51
4119 11175 1.413077 GCGCTAATGGTCTAAGAGGGT 59.587 52.381 0.00 0.00 0.00 4.34
4167 11296 8.149973 AGTACAACCACTTACATAACAAACTG 57.850 34.615 0.00 0.00 0.00 3.16
4179 11308 7.095695 ACATAACAAACTGTGTACTGCTTTT 57.904 32.000 0.00 0.00 40.60 2.27
4215 11344 2.269241 GCCCGAGGCCCATATAGC 59.731 66.667 0.00 0.00 44.06 2.97
4249 11378 4.215399 CCAGAGCTTCCATTTTGTTACGAA 59.785 41.667 0.00 0.00 0.00 3.85
4295 11424 8.691661 AAGCTTTCTTAGGTTATCAACTGAAA 57.308 30.769 0.00 0.00 42.56 2.69
4296 11425 8.691661 AGCTTTCTTAGGTTATCAACTGAAAA 57.308 30.769 0.00 0.00 0.00 2.29
4297 11426 8.568794 AGCTTTCTTAGGTTATCAACTGAAAAC 58.431 33.333 0.00 0.00 0.00 2.43
4298 11427 8.568794 GCTTTCTTAGGTTATCAACTGAAAACT 58.431 33.333 0.00 0.00 0.00 2.66
4299 11428 9.884465 CTTTCTTAGGTTATCAACTGAAAACTG 57.116 33.333 0.00 0.00 0.00 3.16
4300 11429 9.621629 TTTCTTAGGTTATCAACTGAAAACTGA 57.378 29.630 0.00 0.00 0.00 3.41
4301 11430 9.621629 TTCTTAGGTTATCAACTGAAAACTGAA 57.378 29.630 3.79 0.00 0.00 3.02
4302 11431 9.273016 TCTTAGGTTATCAACTGAAAACTGAAG 57.727 33.333 3.79 0.00 0.00 3.02
4316 11445 1.003118 ACTGAAGCCAAGCGGATTGTA 59.997 47.619 5.17 0.00 42.32 2.41
4326 11455 5.730568 GCCAAGCGGATTGTAAGTTGATAAG 60.731 44.000 5.17 0.00 37.17 1.73
4377 11506 1.226575 GGCCGAAAACGCTAATGGC 60.227 57.895 0.00 0.35 41.72 4.40
4481 11617 6.064060 TCAAAGTCCAGGCCATATTTATCAG 58.936 40.000 5.01 0.00 0.00 2.90
4522 11658 2.180276 ACACCAAGGCTACAGTCTAGG 58.820 52.381 0.00 0.00 0.00 3.02
4536 11672 4.202223 ACAGTCTAGGTTCTCTCGCAAAAA 60.202 41.667 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.722700 TCCCGCTTCAGCCTTGCC 62.723 66.667 0.00 0.00 37.91 4.52
2 3 3.130160 CTCCCGCTTCAGCCTTGC 61.130 66.667 0.00 0.00 37.91 4.01
3 4 3.130160 GCTCCCGCTTCAGCCTTG 61.130 66.667 0.00 0.00 37.91 3.61
4 5 3.618780 CTGCTCCCGCTTCAGCCTT 62.619 63.158 0.00 0.00 37.91 4.35
5 6 4.093291 CTGCTCCCGCTTCAGCCT 62.093 66.667 0.00 0.00 37.91 4.58
7 8 4.087892 TCCTGCTCCCGCTTCAGC 62.088 66.667 0.00 0.00 36.97 4.26
8 9 2.125350 GTCCTGCTCCCGCTTCAG 60.125 66.667 0.00 0.00 36.97 3.02
9 10 2.922503 TGTCCTGCTCCCGCTTCA 60.923 61.111 0.00 0.00 36.97 3.02
10 11 2.125350 CTGTCCTGCTCCCGCTTC 60.125 66.667 0.00 0.00 36.97 3.86
11 12 3.710722 CCTGTCCTGCTCCCGCTT 61.711 66.667 0.00 0.00 36.97 4.68
17 18 4.459089 GACCGCCCTGTCCTGCTC 62.459 72.222 0.00 0.00 0.00 4.26
28 29 4.137872 TTCATCCGACGGACCGCC 62.138 66.667 21.02 0.46 32.98 6.13
29 30 2.582498 CTTCATCCGACGGACCGC 60.582 66.667 21.02 6.00 32.98 5.68
30 31 2.104331 CCTTCATCCGACGGACCG 59.896 66.667 21.02 13.61 32.98 4.79
31 32 2.056223 TCCCTTCATCCGACGGACC 61.056 63.158 21.02 0.00 32.98 4.46
32 33 1.141234 GTCCCTTCATCCGACGGAC 59.859 63.158 21.02 0.00 34.99 4.79
33 34 1.000019 AGTCCCTTCATCCGACGGA 60.000 57.895 20.85 20.85 32.15 4.69
34 35 1.320344 TGAGTCCCTTCATCCGACGG 61.320 60.000 7.84 7.84 0.00 4.79
35 36 0.747255 ATGAGTCCCTTCATCCGACG 59.253 55.000 0.00 0.00 32.42 5.12
36 37 1.269309 CGATGAGTCCCTTCATCCGAC 60.269 57.143 9.65 0.00 46.91 4.79
37 38 1.032794 CGATGAGTCCCTTCATCCGA 58.967 55.000 9.65 0.00 46.91 4.55
38 39 0.747255 ACGATGAGTCCCTTCATCCG 59.253 55.000 9.65 7.85 46.91 4.18
39 40 2.517650 GACGATGAGTCCCTTCATCC 57.482 55.000 9.65 0.00 46.91 3.51
49 50 0.253610 AGTCGGAGAGGACGATGAGT 59.746 55.000 0.00 0.00 42.82 3.41
50 51 0.941542 GAGTCGGAGAGGACGATGAG 59.058 60.000 0.00 0.00 42.82 2.90
51 52 0.464013 GGAGTCGGAGAGGACGATGA 60.464 60.000 0.00 0.00 42.82 2.92
52 53 1.777030 CGGAGTCGGAGAGGACGATG 61.777 65.000 0.00 0.00 42.82 3.84
53 54 1.524165 CGGAGTCGGAGAGGACGAT 60.524 63.158 0.00 0.00 42.82 3.73
54 55 2.125229 CGGAGTCGGAGAGGACGA 60.125 66.667 0.00 0.00 41.81 4.20
55 56 2.125229 TCGGAGTCGGAGAGGACG 60.125 66.667 0.00 0.00 41.81 4.79
56 57 0.677414 AAGTCGGAGTCGGAGAGGAC 60.677 60.000 0.00 0.00 36.95 3.85
57 58 0.392729 GAAGTCGGAGTCGGAGAGGA 60.393 60.000 0.00 0.00 36.95 3.71
58 59 0.677098 TGAAGTCGGAGTCGGAGAGG 60.677 60.000 0.00 0.00 36.95 3.69
59 60 1.135632 GTTGAAGTCGGAGTCGGAGAG 60.136 57.143 0.00 0.00 36.95 3.20
60 61 0.879765 GTTGAAGTCGGAGTCGGAGA 59.120 55.000 0.00 0.00 36.95 3.71
61 62 0.454620 CGTTGAAGTCGGAGTCGGAG 60.455 60.000 0.00 0.00 36.95 4.63
62 63 0.886043 TCGTTGAAGTCGGAGTCGGA 60.886 55.000 0.00 0.00 36.95 4.55
63 64 0.728466 GTCGTTGAAGTCGGAGTCGG 60.728 60.000 0.00 0.00 36.95 4.79
64 65 1.058590 CGTCGTTGAAGTCGGAGTCG 61.059 60.000 0.00 0.00 37.82 4.18
65 66 0.728466 CCGTCGTTGAAGTCGGAGTC 60.728 60.000 0.00 0.00 43.59 3.36
66 67 1.285023 CCGTCGTTGAAGTCGGAGT 59.715 57.895 0.00 0.00 43.59 3.85
67 68 2.087009 GCCGTCGTTGAAGTCGGAG 61.087 63.158 6.63 0.00 43.59 4.63
68 69 2.049802 GCCGTCGTTGAAGTCGGA 60.050 61.111 6.63 0.00 43.59 4.55
69 70 3.467119 CGCCGTCGTTGAAGTCGG 61.467 66.667 0.00 0.00 43.70 4.79
70 71 2.427905 TCGCCGTCGTTGAAGTCG 60.428 61.111 0.00 0.00 36.96 4.18
71 72 1.606350 CTGTCGCCGTCGTTGAAGTC 61.606 60.000 0.00 0.00 36.96 3.01
72 73 1.660575 CTGTCGCCGTCGTTGAAGT 60.661 57.895 0.00 0.00 36.96 3.01
73 74 3.000080 GCTGTCGCCGTCGTTGAAG 62.000 63.158 0.00 0.00 36.96 3.02
74 75 3.033764 GCTGTCGCCGTCGTTGAA 61.034 61.111 0.00 0.00 36.96 2.69
75 76 3.891586 GAGCTGTCGCCGTCGTTGA 62.892 63.158 0.00 0.00 36.60 3.18
76 77 3.470567 GAGCTGTCGCCGTCGTTG 61.471 66.667 0.00 0.00 36.60 4.10
77 78 4.719369 GGAGCTGTCGCCGTCGTT 62.719 66.667 0.00 0.00 36.60 3.85
82 83 4.803426 GAGGTGGAGCTGTCGCCG 62.803 72.222 0.00 0.00 39.59 6.46
83 84 4.459089 GGAGGTGGAGCTGTCGCC 62.459 72.222 0.00 0.00 36.60 5.54
84 85 3.363844 GAGGAGGTGGAGCTGTCGC 62.364 68.421 0.00 0.00 0.00 5.19
85 86 2.888863 GAGGAGGTGGAGCTGTCG 59.111 66.667 0.00 0.00 0.00 4.35
86 87 1.939769 GACGAGGAGGTGGAGCTGTC 61.940 65.000 0.00 0.00 0.00 3.51
87 88 1.979693 GACGAGGAGGTGGAGCTGT 60.980 63.158 0.00 0.00 0.00 4.40
88 89 2.716017 GGACGAGGAGGTGGAGCTG 61.716 68.421 0.00 0.00 0.00 4.24
89 90 2.363147 GGACGAGGAGGTGGAGCT 60.363 66.667 0.00 0.00 0.00 4.09
90 91 3.827898 CGGACGAGGAGGTGGAGC 61.828 72.222 0.00 0.00 0.00 4.70
91 92 1.454111 ATCGGACGAGGAGGTGGAG 60.454 63.158 0.00 0.00 0.00 3.86
92 93 1.753078 CATCGGACGAGGAGGTGGA 60.753 63.158 0.00 0.00 0.00 4.02
93 94 1.753078 TCATCGGACGAGGAGGTGG 60.753 63.158 4.86 0.00 31.03 4.61
94 95 1.433879 GTCATCGGACGAGGAGGTG 59.566 63.158 9.45 0.00 35.54 4.00
95 96 1.753463 GGTCATCGGACGAGGAGGT 60.753 63.158 9.45 0.00 45.28 3.85
96 97 1.320344 TTGGTCATCGGACGAGGAGG 61.320 60.000 9.45 0.00 45.28 4.30
97 98 0.101399 CTTGGTCATCGGACGAGGAG 59.899 60.000 9.45 0.00 45.28 3.69
98 99 0.323087 TCTTGGTCATCGGACGAGGA 60.323 55.000 4.86 4.86 45.28 3.71
99 100 0.179134 GTCTTGGTCATCGGACGAGG 60.179 60.000 0.00 0.00 45.28 4.63
100 101 0.179134 GGTCTTGGTCATCGGACGAG 60.179 60.000 0.00 0.00 45.28 4.18
101 102 1.601419 GGGTCTTGGTCATCGGACGA 61.601 60.000 0.00 0.00 45.28 4.20
102 103 1.153628 GGGTCTTGGTCATCGGACG 60.154 63.158 0.00 0.00 45.28 4.79
103 104 0.175989 GAGGGTCTTGGTCATCGGAC 59.824 60.000 0.00 0.00 43.55 4.79
104 105 0.976073 GGAGGGTCTTGGTCATCGGA 60.976 60.000 0.00 0.00 0.00 4.55
105 106 1.264749 TGGAGGGTCTTGGTCATCGG 61.265 60.000 0.00 0.00 0.00 4.18
106 107 0.108138 GTGGAGGGTCTTGGTCATCG 60.108 60.000 0.00 0.00 0.00 3.84
107 108 0.253327 GGTGGAGGGTCTTGGTCATC 59.747 60.000 0.00 0.00 0.00 2.92
108 109 0.475632 TGGTGGAGGGTCTTGGTCAT 60.476 55.000 0.00 0.00 0.00 3.06
109 110 1.074090 TGGTGGAGGGTCTTGGTCA 60.074 57.895 0.00 0.00 0.00 4.02
110 111 1.679898 CTGGTGGAGGGTCTTGGTC 59.320 63.158 0.00 0.00 0.00 4.02
111 112 2.529744 GCTGGTGGAGGGTCTTGGT 61.530 63.158 0.00 0.00 0.00 3.67
112 113 2.352805 GCTGGTGGAGGGTCTTGG 59.647 66.667 0.00 0.00 0.00 3.61
113 114 2.352805 GGCTGGTGGAGGGTCTTG 59.647 66.667 0.00 0.00 0.00 3.02
114 115 3.322466 CGGCTGGTGGAGGGTCTT 61.322 66.667 0.00 0.00 0.00 3.01
125 126 4.814294 GTAGGTGTCCGCGGCTGG 62.814 72.222 23.51 0.00 0.00 4.85
126 127 3.989698 CTGTAGGTGTCCGCGGCTG 62.990 68.421 23.51 4.60 0.00 4.85
127 128 3.760035 CTGTAGGTGTCCGCGGCT 61.760 66.667 23.51 14.70 0.00 5.52
129 130 3.760035 AGCTGTAGGTGTCCGCGG 61.760 66.667 22.12 22.12 0.00 6.46
130 131 2.507102 CAGCTGTAGGTGTCCGCG 60.507 66.667 5.25 0.00 38.61 6.46
131 132 2.815647 GCAGCTGTAGGTGTCCGC 60.816 66.667 16.64 0.00 44.70 5.54
132 133 2.507102 CGCAGCTGTAGGTGTCCG 60.507 66.667 16.64 3.50 44.70 4.79
152 153 3.431725 CTTTGCCCTTCCGGTCGC 61.432 66.667 0.00 0.00 0.00 5.19
153 154 2.746277 CCTTTGCCCTTCCGGTCG 60.746 66.667 0.00 0.00 0.00 4.79
154 155 3.062466 GCCTTTGCCCTTCCGGTC 61.062 66.667 0.00 0.00 0.00 4.79
164 165 1.866853 CTTCCTCGTTGGGCCTTTGC 61.867 60.000 4.53 0.00 36.20 3.68
165 166 0.537371 ACTTCCTCGTTGGGCCTTTG 60.537 55.000 4.53 0.00 36.20 2.77
166 167 1.003233 CTACTTCCTCGTTGGGCCTTT 59.997 52.381 4.53 0.00 36.20 3.11
167 168 0.613777 CTACTTCCTCGTTGGGCCTT 59.386 55.000 4.53 0.00 36.20 4.35
168 169 0.544595 ACTACTTCCTCGTTGGGCCT 60.545 55.000 4.53 0.00 36.20 5.19
169 170 0.391263 CACTACTTCCTCGTTGGGCC 60.391 60.000 0.00 0.00 36.20 5.80
170 171 0.606604 TCACTACTTCCTCGTTGGGC 59.393 55.000 0.00 0.00 36.20 5.36
171 172 3.195825 AGAATCACTACTTCCTCGTTGGG 59.804 47.826 0.00 0.00 36.20 4.12
172 173 4.177026 CAGAATCACTACTTCCTCGTTGG 58.823 47.826 0.00 0.00 37.10 3.77
173 174 3.614616 GCAGAATCACTACTTCCTCGTTG 59.385 47.826 0.00 0.00 0.00 4.10
174 175 3.368531 GGCAGAATCACTACTTCCTCGTT 60.369 47.826 0.00 0.00 0.00 3.85
175 176 2.166664 GGCAGAATCACTACTTCCTCGT 59.833 50.000 0.00 0.00 0.00 4.18
176 177 2.482142 GGGCAGAATCACTACTTCCTCG 60.482 54.545 0.00 0.00 0.00 4.63
177 178 2.501723 TGGGCAGAATCACTACTTCCTC 59.498 50.000 0.00 0.00 0.00 3.71
178 179 2.551270 TGGGCAGAATCACTACTTCCT 58.449 47.619 0.00 0.00 0.00 3.36
179 180 3.471680 GATGGGCAGAATCACTACTTCC 58.528 50.000 0.00 0.00 0.00 3.46
180 181 3.471680 GGATGGGCAGAATCACTACTTC 58.528 50.000 0.00 0.00 0.00 3.01
181 182 2.173569 GGGATGGGCAGAATCACTACTT 59.826 50.000 0.00 0.00 0.00 2.24
182 183 1.771255 GGGATGGGCAGAATCACTACT 59.229 52.381 0.00 0.00 0.00 2.57
183 184 1.202818 GGGGATGGGCAGAATCACTAC 60.203 57.143 0.00 0.00 0.00 2.73
184 185 1.140312 GGGGATGGGCAGAATCACTA 58.860 55.000 0.00 0.00 0.00 2.74
185 186 0.625683 AGGGGATGGGCAGAATCACT 60.626 55.000 0.00 0.00 0.00 3.41
186 187 0.179006 GAGGGGATGGGCAGAATCAC 60.179 60.000 0.00 0.00 0.00 3.06
187 188 1.355718 GGAGGGGATGGGCAGAATCA 61.356 60.000 0.00 0.00 0.00 2.57
188 189 1.458045 GGAGGGGATGGGCAGAATC 59.542 63.158 0.00 0.00 0.00 2.52
189 190 2.087461 GGGAGGGGATGGGCAGAAT 61.087 63.158 0.00 0.00 0.00 2.40
190 191 2.696125 GGGAGGGGATGGGCAGAA 60.696 66.667 0.00 0.00 0.00 3.02
197 198 3.878667 GAAGGGCGGGAGGGGATG 61.879 72.222 0.00 0.00 0.00 3.51
202 203 4.806339 AGGAGGAAGGGCGGGAGG 62.806 72.222 0.00 0.00 0.00 4.30
203 204 3.157949 GAGGAGGAAGGGCGGGAG 61.158 72.222 0.00 0.00 0.00 4.30
204 205 2.840203 ATTGAGGAGGAAGGGCGGGA 62.840 60.000 0.00 0.00 0.00 5.14
205 206 2.378634 ATTGAGGAGGAAGGGCGGG 61.379 63.158 0.00 0.00 0.00 6.13
206 207 1.153086 CATTGAGGAGGAAGGGCGG 60.153 63.158 0.00 0.00 0.00 6.13
207 208 0.035056 AACATTGAGGAGGAAGGGCG 60.035 55.000 0.00 0.00 0.00 6.13
208 209 2.222227 AAACATTGAGGAGGAAGGGC 57.778 50.000 0.00 0.00 0.00 5.19
209 210 7.084268 AGATATAAACATTGAGGAGGAAGGG 57.916 40.000 0.00 0.00 0.00 3.95
210 211 8.986929 AAAGATATAAACATTGAGGAGGAAGG 57.013 34.615 0.00 0.00 0.00 3.46
249 250 3.376234 GGAGCCCGGACAAGTTTATAAAC 59.624 47.826 18.77 18.77 39.17 2.01
250 251 3.009253 TGGAGCCCGGACAAGTTTATAAA 59.991 43.478 0.73 0.00 0.00 1.40
251 252 2.572556 TGGAGCCCGGACAAGTTTATAA 59.427 45.455 0.73 0.00 0.00 0.98
252 253 2.093341 GTGGAGCCCGGACAAGTTTATA 60.093 50.000 0.73 0.00 0.00 0.98
253 254 0.988832 TGGAGCCCGGACAAGTTTAT 59.011 50.000 0.73 0.00 0.00 1.40
254 255 0.035739 GTGGAGCCCGGACAAGTTTA 59.964 55.000 0.73 0.00 0.00 2.01
255 256 1.228154 GTGGAGCCCGGACAAGTTT 60.228 57.895 0.73 0.00 0.00 2.66
256 257 2.430367 GTGGAGCCCGGACAAGTT 59.570 61.111 0.73 0.00 0.00 2.66
257 258 3.637273 GGTGGAGCCCGGACAAGT 61.637 66.667 0.73 0.00 0.00 3.16
258 259 4.760047 CGGTGGAGCCCGGACAAG 62.760 72.222 0.73 0.00 44.32 3.16
265 266 3.056328 GCTTGTTCGGTGGAGCCC 61.056 66.667 0.00 0.00 0.00 5.19
266 267 3.056328 GGCTTGTTCGGTGGAGCC 61.056 66.667 5.33 5.33 46.81 4.70
267 268 3.423154 CGGCTTGTTCGGTGGAGC 61.423 66.667 0.00 0.00 0.00 4.70
268 269 2.742372 CCGGCTTGTTCGGTGGAG 60.742 66.667 0.00 0.00 42.33 3.86
316 317 1.596477 GCTCCTCCAATAGCAGCCG 60.596 63.158 0.00 0.00 38.63 5.52
326 327 2.363018 CCCGAGTCTGCTCCTCCA 60.363 66.667 0.00 0.00 38.49 3.86
347 348 2.938838 TGTTTTTCCCTGTTGACGGAT 58.061 42.857 0.00 0.00 0.00 4.18
389 390 2.363306 ACTTTGGGTGATGCAGTTGA 57.637 45.000 0.00 0.00 0.00 3.18
419 420 2.359981 AATGTAGATGCTGCCATGCT 57.640 45.000 0.00 0.00 0.00 3.79
420 421 3.447918 AAAATGTAGATGCTGCCATGC 57.552 42.857 0.00 0.00 0.00 4.06
421 422 6.331845 TGTTAAAAATGTAGATGCTGCCATG 58.668 36.000 0.00 0.00 0.00 3.66
422 423 6.528537 TGTTAAAAATGTAGATGCTGCCAT 57.471 33.333 0.00 0.00 0.00 4.40
423 424 5.973899 TGTTAAAAATGTAGATGCTGCCA 57.026 34.783 0.00 0.00 0.00 4.92
424 425 7.650834 TTTTGTTAAAAATGTAGATGCTGCC 57.349 32.000 0.00 0.00 30.24 4.85
448 914 6.567602 AGAGTTTAAGACCCATCTAGCATT 57.432 37.500 0.00 0.00 33.57 3.56
468 934 7.704472 AGATGAGTTCTCGCAAAACTATAAGAG 59.296 37.037 0.00 0.00 37.10 2.85
469 935 7.548097 AGATGAGTTCTCGCAAAACTATAAGA 58.452 34.615 0.00 0.00 37.10 2.10
470 936 7.763172 AGATGAGTTCTCGCAAAACTATAAG 57.237 36.000 0.00 0.00 37.10 1.73
472 938 8.221965 TCTAGATGAGTTCTCGCAAAACTATA 57.778 34.615 0.00 0.00 37.10 1.31
473 939 7.101652 TCTAGATGAGTTCTCGCAAAACTAT 57.898 36.000 0.00 0.00 37.10 2.12
474 940 6.510879 TCTAGATGAGTTCTCGCAAAACTA 57.489 37.500 0.00 0.00 37.10 2.24
475 941 5.392767 TCTAGATGAGTTCTCGCAAAACT 57.607 39.130 0.00 0.00 39.61 2.66
477 943 5.965922 TCATCTAGATGAGTTCTCGCAAAA 58.034 37.500 27.93 4.75 42.42 2.44
478 944 5.582689 TCATCTAGATGAGTTCTCGCAAA 57.417 39.130 27.93 4.94 42.42 3.68
498 964 9.699410 AGGTGAATGAGACCAAATTATATTTCA 57.301 29.630 0.00 0.00 35.76 2.69
506 972 8.470002 GCTATAAAAGGTGAATGAGACCAAATT 58.530 33.333 0.00 0.00 35.76 1.82
507 973 7.068716 GGCTATAAAAGGTGAATGAGACCAAAT 59.931 37.037 0.00 0.00 35.76 2.32
511 977 5.437060 TGGCTATAAAAGGTGAATGAGACC 58.563 41.667 0.00 0.00 0.00 3.85
512 978 7.573968 AATGGCTATAAAAGGTGAATGAGAC 57.426 36.000 0.00 0.00 0.00 3.36
513 979 9.693739 TTTAATGGCTATAAAAGGTGAATGAGA 57.306 29.630 0.00 0.00 0.00 3.27
518 984 9.249053 TCACATTTAATGGCTATAAAAGGTGAA 57.751 29.630 9.88 10.68 37.50 3.18
519 985 8.815565 TCACATTTAATGGCTATAAAAGGTGA 57.184 30.769 9.88 18.11 37.77 4.02
520 986 9.467258 CATCACATTTAATGGCTATAAAAGGTG 57.533 33.333 9.88 15.82 35.34 4.00
521 987 8.143835 GCATCACATTTAATGGCTATAAAAGGT 58.856 33.333 9.88 0.00 33.60 3.50
522 988 8.362639 AGCATCACATTTAATGGCTATAAAAGG 58.637 33.333 9.88 0.00 33.60 3.11
528 994 9.964354 TCTTATAGCATCACATTTAATGGCTAT 57.036 29.630 21.11 21.11 32.32 2.97
530 996 8.737175 CATCTTATAGCATCACATTTAATGGCT 58.263 33.333 9.88 10.13 33.60 4.75
531 997 7.487189 GCATCTTATAGCATCACATTTAATGGC 59.513 37.037 9.88 3.12 33.60 4.40
532 998 7.695201 CGCATCTTATAGCATCACATTTAATGG 59.305 37.037 9.88 0.00 33.60 3.16
534 1000 8.232513 CACGCATCTTATAGCATCACATTTAAT 58.767 33.333 0.00 0.00 0.00 1.40
535 1001 7.226523 ACACGCATCTTATAGCATCACATTTAA 59.773 33.333 0.00 0.00 0.00 1.52
536 1002 6.705825 ACACGCATCTTATAGCATCACATTTA 59.294 34.615 0.00 0.00 0.00 1.40
537 1003 5.528690 ACACGCATCTTATAGCATCACATTT 59.471 36.000 0.00 0.00 0.00 2.32
538 1004 5.049886 CACACGCATCTTATAGCATCACATT 60.050 40.000 0.00 0.00 0.00 2.71
540 1006 3.803778 CACACGCATCTTATAGCATCACA 59.196 43.478 0.00 0.00 0.00 3.58
541 1007 3.804325 ACACACGCATCTTATAGCATCAC 59.196 43.478 0.00 0.00 0.00 3.06
542 1008 3.803778 CACACACGCATCTTATAGCATCA 59.196 43.478 0.00 0.00 0.00 3.07
543 1009 3.363378 GCACACACGCATCTTATAGCATC 60.363 47.826 0.00 0.00 0.00 3.91
544 1010 2.545526 GCACACACGCATCTTATAGCAT 59.454 45.455 0.00 0.00 0.00 3.79
545 1011 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
548 1014 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
549 1015 2.002586 GTCAGCACACACGCATCTTAT 58.997 47.619 0.00 0.00 0.00 1.73
550 1016 1.428448 GTCAGCACACACGCATCTTA 58.572 50.000 0.00 0.00 0.00 2.10
551 1017 1.560004 CGTCAGCACACACGCATCTT 61.560 55.000 0.00 0.00 0.00 2.40
552 1018 2.023771 CGTCAGCACACACGCATCT 61.024 57.895 0.00 0.00 0.00 2.90
553 1019 2.310233 ACGTCAGCACACACGCATC 61.310 57.895 0.00 0.00 39.73 3.91
554 1020 2.280119 ACGTCAGCACACACGCAT 60.280 55.556 0.00 0.00 39.73 4.73
555 1021 3.261216 CACGTCAGCACACACGCA 61.261 61.111 0.00 0.00 39.73 5.24
556 1022 4.000557 CCACGTCAGCACACACGC 62.001 66.667 0.00 0.00 39.73 5.34
557 1023 1.221466 AATCCACGTCAGCACACACG 61.221 55.000 0.00 0.00 41.90 4.49
558 1024 0.235665 CAATCCACGTCAGCACACAC 59.764 55.000 0.00 0.00 0.00 3.82
559 1025 0.179059 ACAATCCACGTCAGCACACA 60.179 50.000 0.00 0.00 0.00 3.72
560 1026 1.790755 TACAATCCACGTCAGCACAC 58.209 50.000 0.00 0.00 0.00 3.82
561 1027 2.233676 AGATACAATCCACGTCAGCACA 59.766 45.455 0.00 0.00 0.00 4.57
564 1354 2.893637 ACAGATACAATCCACGTCAGC 58.106 47.619 0.00 0.00 0.00 4.26
569 1359 6.668323 AGAACAAAAACAGATACAATCCACG 58.332 36.000 0.00 0.00 0.00 4.94
572 1362 8.567948 TCTTGAGAACAAAAACAGATACAATCC 58.432 33.333 0.00 0.00 35.49 3.01
575 1365 9.119418 TCATCTTGAGAACAAAAACAGATACAA 57.881 29.630 0.00 0.00 35.49 2.41
576 1366 8.675705 TCATCTTGAGAACAAAAACAGATACA 57.324 30.769 0.00 0.00 35.49 2.29
579 1369 8.853126 TCATTCATCTTGAGAACAAAAACAGAT 58.147 29.630 0.00 0.00 35.49 2.90
580 1370 8.224389 TCATTCATCTTGAGAACAAAAACAGA 57.776 30.769 0.00 0.00 35.49 3.41
581 1371 8.347771 TCTCATTCATCTTGAGAACAAAAACAG 58.652 33.333 1.08 0.00 44.94 3.16
620 1410 6.183360 GGAGTGCCTAGAACTCATTTAGATGA 60.183 42.308 20.54 0.00 44.86 2.92
621 1411 5.988561 GGAGTGCCTAGAACTCATTTAGATG 59.011 44.000 20.54 0.00 44.86 2.90
622 1412 5.071115 GGGAGTGCCTAGAACTCATTTAGAT 59.929 44.000 20.54 0.00 44.86 1.98
624 1414 4.162320 TGGGAGTGCCTAGAACTCATTTAG 59.838 45.833 20.54 0.00 44.86 1.85
625 1415 4.101114 TGGGAGTGCCTAGAACTCATTTA 58.899 43.478 20.54 6.88 44.86 1.40
626 1416 2.912956 TGGGAGTGCCTAGAACTCATTT 59.087 45.455 20.54 0.00 44.86 2.32
627 1417 2.551270 TGGGAGTGCCTAGAACTCATT 58.449 47.619 20.54 0.25 44.86 2.57
628 1418 2.254152 TGGGAGTGCCTAGAACTCAT 57.746 50.000 20.54 0.00 44.86 2.90
629 1419 2.024176 TTGGGAGTGCCTAGAACTCA 57.976 50.000 20.54 5.71 44.86 3.41
631 1421 2.303311 GAGTTTGGGAGTGCCTAGAACT 59.697 50.000 14.20 14.20 35.12 3.01
632 1422 2.303311 AGAGTTTGGGAGTGCCTAGAAC 59.697 50.000 1.06 4.78 0.00 3.01
633 1423 2.621070 AGAGTTTGGGAGTGCCTAGAA 58.379 47.619 1.06 0.00 0.00 2.10
634 1424 2.327325 AGAGTTTGGGAGTGCCTAGA 57.673 50.000 1.06 0.00 0.00 2.43
635 1425 4.553330 TTAAGAGTTTGGGAGTGCCTAG 57.447 45.455 1.06 0.00 0.00 3.02
636 1426 4.080526 GGATTAAGAGTTTGGGAGTGCCTA 60.081 45.833 1.06 0.00 0.00 3.93
637 1427 3.308473 GGATTAAGAGTTTGGGAGTGCCT 60.308 47.826 1.06 0.00 0.00 4.75
638 1428 3.017442 GGATTAAGAGTTTGGGAGTGCC 58.983 50.000 0.00 0.00 0.00 5.01
639 1429 3.017442 GGGATTAAGAGTTTGGGAGTGC 58.983 50.000 0.00 0.00 0.00 4.40
641 1431 3.542604 AGGGGATTAAGAGTTTGGGAGT 58.457 45.455 0.00 0.00 0.00 3.85
642 1432 5.710409 TTAGGGGATTAAGAGTTTGGGAG 57.290 43.478 0.00 0.00 0.00 4.30
643 1433 6.183361 TGTTTTAGGGGATTAAGAGTTTGGGA 60.183 38.462 0.00 0.00 0.00 4.37
645 1435 6.946009 TCTGTTTTAGGGGATTAAGAGTTTGG 59.054 38.462 0.00 0.00 0.00 3.28
646 1436 7.996098 TCTGTTTTAGGGGATTAAGAGTTTG 57.004 36.000 0.00 0.00 0.00 2.93
647 1437 9.429109 TTTTCTGTTTTAGGGGATTAAGAGTTT 57.571 29.630 0.00 0.00 0.00 2.66
648 1438 9.429109 TTTTTCTGTTTTAGGGGATTAAGAGTT 57.571 29.630 0.00 0.00 0.00 3.01
649 1439 9.601810 ATTTTTCTGTTTTAGGGGATTAAGAGT 57.398 29.630 0.00 0.00 0.00 3.24
841 3305 5.581605 ACGCAAGGCAACATATTTCTATTG 58.418 37.500 0.00 0.00 46.39 1.90
911 3375 0.613853 TGGTAGGTCGAGGAGTTGGG 60.614 60.000 0.00 0.00 0.00 4.12
928 3392 5.290493 TCACAGGCCTGTTTATATACTGG 57.710 43.478 36.06 19.76 42.83 4.00
958 3422 1.371558 GGCCGGACACAGAGTTTCT 59.628 57.895 5.05 0.00 0.00 2.52
1169 3683 1.109296 CACAACGTGCAAAGTTACGC 58.891 50.000 8.28 0.00 43.63 4.42
1521 4042 3.081061 ACGTTATTTCTCATGCAGGCAA 58.919 40.909 0.00 0.00 0.00 4.52
1557 4464 5.178096 TCTTCATAAAGCCATCCAACAGA 57.822 39.130 0.00 0.00 32.18 3.41
1558 4465 7.420800 GTTATCTTCATAAAGCCATCCAACAG 58.579 38.462 0.00 0.00 32.18 3.16
1567 4477 7.303634 TCTGTTTCGTTATCTTCATAAAGCC 57.696 36.000 0.00 0.00 32.18 4.35
1605 4791 6.940867 GTGTTAAAAGGGACCTTTCAGACTAT 59.059 38.462 16.12 2.49 44.50 2.12
1658 5324 4.201970 TGCGTGAAACTTAAACCTTTGAGG 60.202 41.667 0.00 0.00 36.41 3.86
1662 5328 3.181484 GGGTGCGTGAAACTTAAACCTTT 60.181 43.478 0.00 0.00 31.75 3.11
1720 5387 0.738389 ACTCAAACAAAGTGGTGGCG 59.262 50.000 0.00 0.00 0.00 5.69
1746 5413 0.251916 CCGCCCCTGTGAAATGTCTA 59.748 55.000 0.00 0.00 0.00 2.59
1756 5423 2.829384 AACATCACACCGCCCCTGT 61.829 57.895 0.00 0.00 0.00 4.00
1757 5424 2.034066 AACATCACACCGCCCCTG 59.966 61.111 0.00 0.00 0.00 4.45
1760 5427 0.960364 ATCACAACATCACACCGCCC 60.960 55.000 0.00 0.00 0.00 6.13
1761 5428 0.168788 CATCACAACATCACACCGCC 59.831 55.000 0.00 0.00 0.00 6.13
1762 5429 0.874390 ACATCACAACATCACACCGC 59.126 50.000 0.00 0.00 0.00 5.68
1763 5430 1.464608 GGACATCACAACATCACACCG 59.535 52.381 0.00 0.00 0.00 4.94
1764 5431 2.783135 AGGACATCACAACATCACACC 58.217 47.619 0.00 0.00 0.00 4.16
1765 5432 4.836125 AAAGGACATCACAACATCACAC 57.164 40.909 0.00 0.00 0.00 3.82
1766 5433 5.850557 AAAAAGGACATCACAACATCACA 57.149 34.783 0.00 0.00 0.00 3.58
2035 6378 5.474532 TGAAAGTTCGGCAGTAGACTAACTA 59.525 40.000 0.00 0.00 0.00 2.24
2048 6391 2.159282 TCCGAGACTATGAAAGTTCGGC 60.159 50.000 16.77 0.00 46.79 5.54
2303 7015 3.849953 GTCGACGATGTTGCGGGC 61.850 66.667 0.00 0.00 35.12 6.13
2306 7018 3.186047 GGGGTCGACGATGTTGCG 61.186 66.667 9.92 0.00 37.29 4.85
2329 7041 5.713025 GGTACGTATACCTTGTTGAGTTGA 58.287 41.667 0.00 0.00 46.68 3.18
2348 7060 2.812011 CAACTGCAGGTAGGTTTGGTAC 59.188 50.000 19.93 0.00 0.00 3.34
2351 7063 0.598065 GCAACTGCAGGTAGGTTTGG 59.402 55.000 19.93 0.00 41.59 3.28
2366 7078 1.139163 CGGAAAAATGGCAGTGCAAC 58.861 50.000 18.61 0.22 0.00 4.17
2367 7079 0.749649 ACGGAAAAATGGCAGTGCAA 59.250 45.000 18.61 5.88 0.00 4.08
2369 7081 0.313672 TGACGGAAAAATGGCAGTGC 59.686 50.000 6.55 6.55 0.00 4.40
2399 7111 7.582667 AGGTTATTACACCCATGCTTTATTC 57.417 36.000 0.00 0.00 37.58 1.75
2400 7112 7.617723 TGAAGGTTATTACACCCATGCTTTATT 59.382 33.333 0.00 0.00 37.58 1.40
2401 7113 7.122715 TGAAGGTTATTACACCCATGCTTTAT 58.877 34.615 0.00 0.00 37.58 1.40
2407 7119 7.548780 CCAAAATTGAAGGTTATTACACCCATG 59.451 37.037 0.00 0.00 37.58 3.66
2409 7121 6.555360 ACCAAAATTGAAGGTTATTACACCCA 59.445 34.615 0.00 0.00 37.58 4.51
2410 7122 6.871492 CACCAAAATTGAAGGTTATTACACCC 59.129 38.462 0.00 0.00 37.58 4.61
2411 7123 6.871492 CCACCAAAATTGAAGGTTATTACACC 59.129 38.462 0.00 0.00 37.04 4.16
2412 7124 7.438564 ACCACCAAAATTGAAGGTTATTACAC 58.561 34.615 0.00 0.00 33.39 2.90
2413 7125 7.287927 TGACCACCAAAATTGAAGGTTATTACA 59.712 33.333 9.71 2.84 36.00 2.41
2416 7128 6.739331 TGACCACCAAAATTGAAGGTTATT 57.261 33.333 9.71 0.00 36.00 1.40
2420 7132 3.244181 GCATGACCACCAAAATTGAAGGT 60.244 43.478 0.00 8.55 37.68 3.50
2421 7133 3.244146 TGCATGACCACCAAAATTGAAGG 60.244 43.478 0.00 0.00 0.00 3.46
2422 7134 3.992643 TGCATGACCACCAAAATTGAAG 58.007 40.909 0.00 0.00 0.00 3.02
2424 7136 4.316645 CAATGCATGACCACCAAAATTGA 58.683 39.130 0.00 0.00 30.67 2.57
2427 7139 2.038689 TGCAATGCATGACCACCAAAAT 59.961 40.909 2.72 0.00 31.71 1.82
2429 7141 1.046204 TGCAATGCATGACCACCAAA 58.954 45.000 2.72 0.00 31.71 3.28
2442 7154 0.604073 TCACCACCTGCAATGCAATG 59.396 50.000 9.92 10.61 38.41 2.82
2443 7155 0.892755 CTCACCACCTGCAATGCAAT 59.107 50.000 9.92 0.00 38.41 3.56
2444 7156 1.180456 CCTCACCACCTGCAATGCAA 61.180 55.000 9.92 0.00 38.41 4.08
2498 7778 2.273912 ACCTTGTCGTCCTCCGTCC 61.274 63.158 0.00 0.00 37.94 4.79
2574 9011 5.186409 AGGAAGTCGTGGCTTAAACTGTATA 59.814 40.000 0.00 0.00 0.00 1.47
2609 9046 6.480524 TCATCGTTCAAGTATTTTGGTGAG 57.519 37.500 0.00 0.00 0.00 3.51
2612 9049 6.403636 GCAGATCATCGTTCAAGTATTTTGGT 60.404 38.462 0.00 0.00 0.00 3.67
2613 9050 5.967674 GCAGATCATCGTTCAAGTATTTTGG 59.032 40.000 0.00 0.00 0.00 3.28
2615 9052 6.183360 CCAGCAGATCATCGTTCAAGTATTTT 60.183 38.462 0.00 0.00 0.00 1.82
2616 9053 5.295292 CCAGCAGATCATCGTTCAAGTATTT 59.705 40.000 0.00 0.00 0.00 1.40
2617 9054 4.813161 CCAGCAGATCATCGTTCAAGTATT 59.187 41.667 0.00 0.00 0.00 1.89
2626 9070 1.134580 CCAGAACCAGCAGATCATCGT 60.135 52.381 0.00 0.00 0.00 3.73
2627 9071 1.579698 CCAGAACCAGCAGATCATCG 58.420 55.000 0.00 0.00 0.00 3.84
2646 9094 3.247006 TGAGTAGTTCAGAATTCGGCC 57.753 47.619 0.10 0.00 0.00 6.13
2671 9119 0.798776 CTTCCACGCCTGACACATTC 59.201 55.000 0.00 0.00 0.00 2.67
2677 9137 0.670854 GAGAACCTTCCACGCCTGAC 60.671 60.000 0.00 0.00 0.00 3.51
2699 9159 2.205074 GCCATGTCGAACTGGTAGATG 58.795 52.381 14.21 0.00 34.86 2.90
2798 9258 1.143620 GTAGCCTCTCCTGCTGCTG 59.856 63.158 0.00 0.00 39.91 4.41
2855 9315 2.588620 ACTGTATTGACCCCGCAAAAA 58.411 42.857 0.00 0.00 0.00 1.94
2857 9317 3.075884 GTTACTGTATTGACCCCGCAAA 58.924 45.455 0.00 0.00 0.00 3.68
2858 9318 2.038689 TGTTACTGTATTGACCCCGCAA 59.961 45.455 0.00 0.00 0.00 4.85
2859 9319 1.624312 TGTTACTGTATTGACCCCGCA 59.376 47.619 0.00 0.00 0.00 5.69
2860 9320 2.389962 TGTTACTGTATTGACCCCGC 57.610 50.000 0.00 0.00 0.00 6.13
2861 9321 4.766375 AGATTGTTACTGTATTGACCCCG 58.234 43.478 0.00 0.00 0.00 5.73
2862 9322 9.269453 GTTATAGATTGTTACTGTATTGACCCC 57.731 37.037 0.00 0.00 0.00 4.95
2863 9323 8.975439 CGTTATAGATTGTTACTGTATTGACCC 58.025 37.037 0.00 0.00 0.00 4.46
2864 9324 9.740239 TCGTTATAGATTGTTACTGTATTGACC 57.260 33.333 0.00 0.00 0.00 4.02
2868 9328 9.982651 AGCATCGTTATAGATTGTTACTGTATT 57.017 29.630 0.00 0.00 0.00 1.89
2869 9329 9.411801 CAGCATCGTTATAGATTGTTACTGTAT 57.588 33.333 0.00 0.00 0.00 2.29
2870 9330 8.626526 TCAGCATCGTTATAGATTGTTACTGTA 58.373 33.333 0.00 0.00 0.00 2.74
2871 9331 7.489160 TCAGCATCGTTATAGATTGTTACTGT 58.511 34.615 0.00 0.00 0.00 3.55
2872 9332 7.930513 TCAGCATCGTTATAGATTGTTACTG 57.069 36.000 0.00 0.00 0.00 2.74
2873 9333 8.580720 AGATCAGCATCGTTATAGATTGTTACT 58.419 33.333 0.00 0.00 33.75 2.24
2874 9334 8.749841 AGATCAGCATCGTTATAGATTGTTAC 57.250 34.615 0.00 0.00 33.75 2.50
2875 9335 8.029522 GGAGATCAGCATCGTTATAGATTGTTA 58.970 37.037 0.00 0.00 33.75 2.41
2876 9336 6.870965 GGAGATCAGCATCGTTATAGATTGTT 59.129 38.462 0.00 0.00 33.75 2.83
2885 9345 6.096987 AGTTAGAAAGGAGATCAGCATCGTTA 59.903 38.462 0.00 0.00 33.75 3.18
2892 9353 7.440523 TCAAAAAGTTAGAAAGGAGATCAGC 57.559 36.000 0.00 0.00 0.00 4.26
2893 9354 9.670719 GTTTCAAAAAGTTAGAAAGGAGATCAG 57.329 33.333 0.00 0.00 32.48 2.90
2913 9375 6.285224 TCACCGATGAAGTCTTAAGTTTCAA 58.715 36.000 20.74 10.58 34.80 2.69
2914 9376 5.849510 TCACCGATGAAGTCTTAAGTTTCA 58.150 37.500 19.80 19.80 35.52 2.69
2915 9377 6.814146 AGATCACCGATGAAGTCTTAAGTTTC 59.186 38.462 1.63 8.60 38.69 2.78
2916 9378 6.702329 AGATCACCGATGAAGTCTTAAGTTT 58.298 36.000 1.63 0.00 38.69 2.66
2924 9386 5.352569 ACAATTCAAGATCACCGATGAAGTC 59.647 40.000 0.00 0.00 38.69 3.01
2973 9435 2.807895 CGTTGGCGTCTGGGTACG 60.808 66.667 0.00 0.00 45.58 3.67
3228 9697 1.594833 CCGATCGACAGGTTTGGGA 59.405 57.895 18.66 0.00 0.00 4.37
3261 9730 7.869429 GGAAATCACAAAAGTGTCAAATGAGAT 59.131 33.333 0.00 0.00 35.07 2.75
3311 9799 2.042433 CCCTGTGAAATAAACCCTCCCA 59.958 50.000 0.00 0.00 0.00 4.37
3323 9811 1.150536 GGTGTGCTCCCCTGTGAAA 59.849 57.895 0.00 0.00 0.00 2.69
3396 9884 3.795826 GCATTAGGCATAAGACGTCGTCT 60.796 47.826 22.05 22.05 43.24 4.18
3418 9906 6.088824 GCCATGTAAGTCATTTGAAACTCAG 58.911 40.000 0.00 0.00 34.09 3.35
3428 9916 2.083774 CACGGTGCCATGTAAGTCATT 58.916 47.619 0.00 0.00 34.09 2.57
3438 9926 1.966901 TTCTATCGCCACGGTGCCAT 61.967 55.000 1.68 0.00 0.00 4.40
3472 9962 4.502171 ACACGCATGATCACAAAATTCA 57.498 36.364 0.00 0.00 0.00 2.57
3473 9963 5.156355 AGAACACGCATGATCACAAAATTC 58.844 37.500 0.00 0.00 30.15 2.17
3483 9973 2.816087 AGAAGCAAAGAACACGCATGAT 59.184 40.909 0.00 0.00 0.00 2.45
3492 9982 5.410924 ACCTGACAAAAAGAAGCAAAGAAC 58.589 37.500 0.00 0.00 0.00 3.01
3701 10206 9.071276 GATTTCATTGGAACAGACACCATATAT 57.929 33.333 0.00 0.00 42.39 0.86
3702 10208 8.052141 TGATTTCATTGGAACAGACACCATATA 58.948 33.333 0.00 0.00 42.39 0.86
3708 10214 5.399301 CGTTTGATTTCATTGGAACAGACAC 59.601 40.000 0.00 0.00 42.39 3.67
3724 10230 2.289444 ACTGACGTCCATCCGTTTGATT 60.289 45.455 14.12 0.00 41.98 2.57
3727 10233 1.508632 AACTGACGTCCATCCGTTTG 58.491 50.000 14.12 0.00 41.98 2.93
3728 10234 3.243975 ACTTAACTGACGTCCATCCGTTT 60.244 43.478 14.12 0.00 41.98 3.60
3780 10381 6.265876 AGGTTGCTCTAGCTAACTTATACTCC 59.734 42.308 3.26 0.00 40.76 3.85
3781 10382 7.229907 AGAGGTTGCTCTAGCTAACTTATACTC 59.770 40.741 5.46 8.15 43.46 2.59
3782 10383 7.064229 AGAGGTTGCTCTAGCTAACTTATACT 58.936 38.462 5.46 0.00 43.46 2.12
3783 10384 7.279750 AGAGGTTGCTCTAGCTAACTTATAC 57.720 40.000 5.46 0.00 43.46 1.47
3784 10385 7.255173 CGAAGAGGTTGCTCTAGCTAACTTATA 60.255 40.741 5.46 0.00 43.46 0.98
3785 10386 6.460399 CGAAGAGGTTGCTCTAGCTAACTTAT 60.460 42.308 5.46 0.00 43.46 1.73
3808 10414 0.738975 GACACATGACGATCTCCCGA 59.261 55.000 0.00 0.00 0.00 5.14
3855 10461 7.108194 TGAATCTTACAGTCTGAGCAATTGAT 58.892 34.615 10.34 1.34 0.00 2.57
3856 10462 6.466812 TGAATCTTACAGTCTGAGCAATTGA 58.533 36.000 10.34 0.00 0.00 2.57
3857 10463 6.732531 TGAATCTTACAGTCTGAGCAATTG 57.267 37.500 6.91 0.00 0.00 2.32
3859 10465 7.750229 TTTTGAATCTTACAGTCTGAGCAAT 57.250 32.000 6.91 0.00 0.00 3.56
3860 10466 7.750229 ATTTTGAATCTTACAGTCTGAGCAA 57.250 32.000 6.91 0.00 0.00 3.91
3861 10467 8.846943 TTATTTTGAATCTTACAGTCTGAGCA 57.153 30.769 6.91 0.00 0.00 4.26
3889 10495 9.832445 AAGAGTCTACAGTCTGAACAAATTTTA 57.168 29.630 6.91 0.00 32.09 1.52
3890 10496 8.738645 AAGAGTCTACAGTCTGAACAAATTTT 57.261 30.769 6.91 0.00 32.09 1.82
3891 10497 8.207545 AGAAGAGTCTACAGTCTGAACAAATTT 58.792 33.333 6.91 0.00 32.09 1.82
3892 10498 7.655328 CAGAAGAGTCTACAGTCTGAACAAATT 59.345 37.037 12.43 0.00 38.37 1.82
3893 10499 7.014711 TCAGAAGAGTCTACAGTCTGAACAAAT 59.985 37.037 16.50 0.00 41.22 2.32
3894 10500 6.321435 TCAGAAGAGTCTACAGTCTGAACAAA 59.679 38.462 16.50 0.00 41.22 2.83
3909 10515 3.352648 AGTAGCACTCCTCAGAAGAGTC 58.647 50.000 0.00 0.00 42.69 3.36
3920 10526 3.625764 TCACAAAACACAAGTAGCACTCC 59.374 43.478 0.00 0.00 0.00 3.85
3936 10542 2.835156 TGAGTATCCCACCGATCACAAA 59.165 45.455 0.00 0.00 31.92 2.83
3941 10547 3.385111 AGAACTTGAGTATCCCACCGATC 59.615 47.826 0.00 0.00 31.92 3.69
3983 10589 8.370493 ACAATATCACAAATAGAGGATTCACG 57.630 34.615 0.00 0.00 0.00 4.35
3992 10599 9.653287 AGTCGAAGAAACAATATCACAAATAGA 57.347 29.630 0.00 0.00 39.69 1.98
4060 10667 2.235155 ACTTTGGAGTTTTTGGCCGTTT 59.765 40.909 0.00 0.00 29.87 3.60
4094 11150 3.444916 TCTTAGACCATTAGCGCTTTCG 58.555 45.455 18.68 3.59 39.07 3.46
4100 11156 3.458189 CAACCCTCTTAGACCATTAGCG 58.542 50.000 0.00 0.00 0.00 4.26
4119 11175 4.436113 TGGCATATGAGCACTAATCCAA 57.564 40.909 6.97 0.00 35.83 3.53
4215 11344 2.755103 GGAAGCTCTGGTGTTATTTGGG 59.245 50.000 0.00 0.00 0.00 4.12
4268 11397 8.099364 TCAGTTGATAACCTAAGAAAGCTTTG 57.901 34.615 18.30 4.02 35.56 2.77
4269 11398 8.691661 TTCAGTTGATAACCTAAGAAAGCTTT 57.308 30.769 12.53 12.53 35.56 3.51
4270 11399 8.691661 TTTCAGTTGATAACCTAAGAAAGCTT 57.308 30.769 0.00 0.00 38.15 3.74
4274 11403 9.621629 TCAGTTTTCAGTTGATAACCTAAGAAA 57.378 29.630 10.50 0.00 36.90 2.52
4295 11424 0.883833 CAATCCGCTTGGCTTCAGTT 59.116 50.000 0.00 0.00 0.00 3.16
4296 11425 0.250901 ACAATCCGCTTGGCTTCAGT 60.251 50.000 1.74 0.00 39.30 3.41
4297 11426 1.737838 TACAATCCGCTTGGCTTCAG 58.262 50.000 1.74 0.00 39.30 3.02
4298 11427 2.083774 CTTACAATCCGCTTGGCTTCA 58.916 47.619 1.74 0.00 39.30 3.02
4299 11428 2.084546 ACTTACAATCCGCTTGGCTTC 58.915 47.619 1.74 0.00 39.30 3.86
4300 11429 2.200373 ACTTACAATCCGCTTGGCTT 57.800 45.000 1.74 0.00 39.30 4.35
4301 11430 1.812571 CAACTTACAATCCGCTTGGCT 59.187 47.619 1.74 0.00 39.30 4.75
4302 11431 1.810151 TCAACTTACAATCCGCTTGGC 59.190 47.619 1.74 0.00 39.30 4.52
4316 11445 2.740447 GGTTTCGACCGCTTATCAACTT 59.260 45.455 0.00 0.00 0.00 2.66
4377 11506 2.744494 GCACTAATTCTGCCCTCTCAGG 60.744 54.545 0.00 0.00 34.91 3.86
4481 11617 8.194104 TGGTGTTTGTATATGGTTAATTGCATC 58.806 33.333 0.00 0.00 0.00 3.91
4536 11672 6.706716 GTCTTGAACTAGAGTGTAGCCTTTTT 59.293 38.462 0.00 0.00 0.00 1.94
4537 11673 6.183360 TGTCTTGAACTAGAGTGTAGCCTTTT 60.183 38.462 0.00 0.00 0.00 2.27
4539 11675 4.833380 TGTCTTGAACTAGAGTGTAGCCTT 59.167 41.667 0.00 0.00 0.00 4.35
4546 11684 4.979197 GTGTGAGTGTCTTGAACTAGAGTG 59.021 45.833 0.00 0.00 0.00 3.51
4548 11686 4.023963 TCGTGTGAGTGTCTTGAACTAGAG 60.024 45.833 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.