Multiple sequence alignment - TraesCS4D01G265400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G265400 chr4D 100.000 4660 0 0 1 4660 435424467 435419808 0.000000e+00 8606.0
1 TraesCS4D01G265400 chr4A 90.971 2492 128 43 463 2924 36803152 36800728 0.000000e+00 3265.0
2 TraesCS4D01G265400 chr4A 90.970 598 21 6 2923 3500 36800699 36800115 0.000000e+00 774.0
3 TraesCS4D01G265400 chr4A 86.266 699 37 22 3738 4379 36799619 36798923 0.000000e+00 704.0
4 TraesCS4D01G265400 chr4A 96.233 292 7 1 4369 4660 36798908 36798621 4.220000e-130 475.0
5 TraesCS4D01G265400 chr4A 96.218 238 9 0 3502 3739 36799980 36799743 1.570000e-104 390.0
6 TraesCS4D01G265400 chr4A 83.121 314 39 12 21 320 36803584 36803271 1.650000e-69 274.0
7 TraesCS4D01G265400 chr4B 88.911 1975 120 44 913 2870 536701878 536703770 0.000000e+00 2342.0
8 TraesCS4D01G265400 chr4B 88.260 724 59 13 3502 4214 536704602 536705310 0.000000e+00 843.0
9 TraesCS4D01G265400 chr4B 89.916 595 46 8 2867 3453 536703818 536704406 0.000000e+00 754.0
10 TraesCS4D01G265400 chr4B 96.154 364 7 2 4300 4660 536579715 536579356 5.190000e-164 588.0
11 TraesCS4D01G265400 chr4B 82.421 347 31 10 326 648 536694772 536695112 4.590000e-70 276.0
12 TraesCS4D01G265400 chr4B 88.601 193 11 5 643 833 536695243 536695426 1.690000e-54 224.0
13 TraesCS4D01G265400 chr4B 86.432 199 24 3 326 523 536736788 536736592 1.020000e-51 215.0
14 TraesCS4D01G265400 chr4B 86.624 157 10 8 87 233 536743511 536743356 3.730000e-36 163.0
15 TraesCS4D01G265400 chr4B 85.135 74 3 2 861 926 536695789 536695862 8.370000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G265400 chr4D 435419808 435424467 4659 True 8606.000000 8606 100.000000 1 4660 1 chr4D.!!$R1 4659
1 TraesCS4D01G265400 chr4A 36798621 36803584 4963 True 980.333333 3265 90.629833 21 4660 6 chr4A.!!$R1 4639
2 TraesCS4D01G265400 chr4B 536701878 536705310 3432 False 1313.000000 2342 89.029000 913 4214 3 chr4B.!!$F2 3301

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
217 225 0.036388 CCTGCCTAAGCCTTCGTGAA 60.036 55.000 0.00 0.00 38.69 3.18 F
980 1071 0.108207 TAGAAAACCGTGGGCCGAAA 59.892 50.000 0.00 0.00 39.56 3.46 F
1701 1826 1.602377 GTGTAGGCCATTACGGAATGC 59.398 52.381 15.31 10.19 41.09 3.56 F
2371 2518 0.615331 TCCTCCAGACAATCCAGTGC 59.385 55.000 0.00 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1756 1881 0.251165 ACGCTACTGTTGGCCCATTT 60.251 50.0 0.00 0.0 0.0 2.32 R
2359 2506 0.253044 TAGGGCAGCACTGGATTGTC 59.747 55.0 7.70 0.0 0.0 3.18 R
3396 3644 0.255318 AGCATCCTTGAAGCCCTGAG 59.745 55.0 0.00 0.0 0.0 3.35 R
4288 4869 0.530650 CCAATCGTAGCGCAGGACAT 60.531 55.0 11.47 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.579207 TTACTACGACTGCATCCAGC 57.421 50.000 0.00 0.00 43.02 4.85
42 43 2.421424 GCTTGTGCTAGTGCTAATGCTT 59.579 45.455 0.00 0.00 40.48 3.91
51 52 3.364549 AGTGCTAATGCTTTGCCCAATA 58.635 40.909 0.00 0.00 40.48 1.90
57 58 4.556592 AATGCTTTGCCCAATATGTTGT 57.443 36.364 1.26 0.00 33.36 3.32
61 62 3.737972 GCTTTGCCCAATATGTTGTAGCC 60.738 47.826 10.57 0.00 33.88 3.93
67 68 4.724399 CCCAATATGTTGTAGCCATGGTA 58.276 43.478 14.67 1.63 33.36 3.25
71 72 2.665649 TGTTGTAGCCATGGTAGACG 57.334 50.000 14.67 0.00 0.00 4.18
75 76 2.384828 TGTAGCCATGGTAGACGATGT 58.615 47.619 14.67 0.00 31.27 3.06
117 118 6.924111 ACAAAGTGAATCGCCTAAATTCATT 58.076 32.000 2.25 0.00 43.10 2.57
177 182 7.496529 TTTGAAGAGAACACATAGAACCAAG 57.503 36.000 0.00 0.00 0.00 3.61
178 183 5.551233 TGAAGAGAACACATAGAACCAAGG 58.449 41.667 0.00 0.00 0.00 3.61
186 194 8.643324 AGAACACATAGAACCAAGGACTATATC 58.357 37.037 0.00 0.80 0.00 1.63
190 198 7.821359 CACATAGAACCAAGGACTATATCATGG 59.179 40.741 0.00 0.00 40.20 3.66
196 204 2.839228 AGGACTATATCATGGAGGGGC 58.161 52.381 0.00 0.00 0.00 5.80
198 206 2.769095 GGACTATATCATGGAGGGGCTC 59.231 54.545 0.00 0.00 0.00 4.70
212 220 4.549793 GCTCCTGCCTAAGCCTTC 57.450 61.111 0.00 0.00 38.69 3.46
214 222 1.901085 CTCCTGCCTAAGCCTTCGT 59.099 57.895 0.00 0.00 38.69 3.85
215 223 0.460987 CTCCTGCCTAAGCCTTCGTG 60.461 60.000 0.00 0.00 38.69 4.35
217 225 0.036388 CCTGCCTAAGCCTTCGTGAA 60.036 55.000 0.00 0.00 38.69 3.18
218 226 1.407437 CCTGCCTAAGCCTTCGTGAAT 60.407 52.381 0.00 0.00 38.69 2.57
219 227 1.936547 CTGCCTAAGCCTTCGTGAATC 59.063 52.381 0.00 0.00 38.69 2.52
220 228 1.300481 GCCTAAGCCTTCGTGAATCC 58.700 55.000 0.00 0.00 0.00 3.01
222 230 2.827652 CCTAAGCCTTCGTGAATCCTC 58.172 52.381 0.00 0.00 0.00 3.71
224 237 0.984230 AAGCCTTCGTGAATCCTCCA 59.016 50.000 0.00 0.00 0.00 3.86
230 243 1.475403 TCGTGAATCCTCCACTCTCC 58.525 55.000 0.00 0.00 32.64 3.71
232 245 2.241430 TCGTGAATCCTCCACTCTCCTA 59.759 50.000 0.00 0.00 32.64 2.94
233 246 2.359531 CGTGAATCCTCCACTCTCCTAC 59.640 54.545 0.00 0.00 32.64 3.18
235 248 3.769844 GTGAATCCTCCACTCTCCTACAA 59.230 47.826 0.00 0.00 0.00 2.41
251 265 4.074970 CCTACAAGGCACTCTGAATTGTT 58.925 43.478 0.00 0.00 38.49 2.83
253 267 4.311816 ACAAGGCACTCTGAATTGTTTG 57.688 40.909 0.00 0.00 38.49 2.93
261 275 6.161381 GCACTCTGAATTGTTTGATCCAAAT 58.839 36.000 0.00 0.00 35.74 2.32
263 277 7.149973 CACTCTGAATTGTTTGATCCAAATGT 58.850 34.615 0.00 0.00 35.74 2.71
273 287 8.309163 TGTTTGATCCAAATGTAGATTTTTGC 57.691 30.769 0.00 0.00 35.74 3.68
281 295 8.855110 TCCAAATGTAGATTTTTGCAAGTTCTA 58.145 29.630 0.00 5.23 32.68 2.10
282 296 9.132521 CCAAATGTAGATTTTTGCAAGTTCTAG 57.867 33.333 12.62 0.00 32.68 2.43
283 297 9.683069 CAAATGTAGATTTTTGCAAGTTCTAGT 57.317 29.630 12.62 5.47 28.65 2.57
288 302 9.204570 GTAGATTTTTGCAAGTTCTAGTAGACA 57.795 33.333 12.62 0.00 0.00 3.41
289 303 8.316640 AGATTTTTGCAAGTTCTAGTAGACAG 57.683 34.615 0.00 0.00 0.00 3.51
297 311 6.924060 GCAAGTTCTAGTAGACAGAAACAAGA 59.076 38.462 0.00 0.00 33.95 3.02
315 329 3.636153 AGAGAGTATTTCTTGCCACCC 57.364 47.619 0.00 0.00 35.87 4.61
316 330 2.093447 AGAGAGTATTTCTTGCCACCCG 60.093 50.000 0.00 0.00 35.87 5.28
317 331 1.906574 AGAGTATTTCTTGCCACCCGA 59.093 47.619 0.00 0.00 29.61 5.14
318 332 2.007608 GAGTATTTCTTGCCACCCGAC 58.992 52.381 0.00 0.00 0.00 4.79
323 337 2.672996 CTTGCCACCCGACCCAAG 60.673 66.667 0.00 0.00 0.00 3.61
324 338 3.172106 TTGCCACCCGACCCAAGA 61.172 61.111 0.00 0.00 0.00 3.02
333 384 1.435577 CCGACCCAAGAACCTTAACG 58.564 55.000 0.00 0.00 0.00 3.18
347 398 8.574196 AGAACCTTAACGAATTGAAATTTGTG 57.426 30.769 8.99 1.06 41.09 3.33
348 399 8.194769 AGAACCTTAACGAATTGAAATTTGTGT 58.805 29.630 8.99 1.58 41.09 3.72
349 400 7.692908 ACCTTAACGAATTGAAATTTGTGTG 57.307 32.000 8.99 3.93 41.09 3.82
350 401 7.262048 ACCTTAACGAATTGAAATTTGTGTGT 58.738 30.769 8.99 3.17 41.09 3.72
351 402 7.434013 ACCTTAACGAATTGAAATTTGTGTGTC 59.566 33.333 8.99 0.00 41.09 3.67
352 403 7.647715 CCTTAACGAATTGAAATTTGTGTGTCT 59.352 33.333 8.99 0.00 41.09 3.41
359 411 5.689383 TGAAATTTGTGTGTCTCCTAAGC 57.311 39.130 0.00 0.00 0.00 3.09
365 417 3.230976 TGTGTGTCTCCTAAGCAGAAGA 58.769 45.455 0.00 0.00 0.00 2.87
366 418 3.256879 TGTGTGTCTCCTAAGCAGAAGAG 59.743 47.826 0.00 0.00 0.00 2.85
377 429 7.957002 TCCTAAGCAGAAGAGTTTATCCATAG 58.043 38.462 0.00 0.00 0.00 2.23
381 433 7.049799 AGCAGAAGAGTTTATCCATAGAGAC 57.950 40.000 0.00 0.00 0.00 3.36
384 436 7.201866 GCAGAAGAGTTTATCCATAGAGACTCA 60.202 40.741 5.02 0.00 34.92 3.41
396 448 7.578203 TCCATAGAGACTCAGATACTTCTTGA 58.422 38.462 5.02 0.00 0.00 3.02
397 449 7.500892 TCCATAGAGACTCAGATACTTCTTGAC 59.499 40.741 5.02 0.00 0.00 3.18
398 450 7.502226 CCATAGAGACTCAGATACTTCTTGACT 59.498 40.741 5.02 0.00 0.00 3.41
399 451 8.902806 CATAGAGACTCAGATACTTCTTGACTT 58.097 37.037 5.02 0.00 0.00 3.01
400 452 7.391148 AGAGACTCAGATACTTCTTGACTTC 57.609 40.000 5.02 0.00 0.00 3.01
401 453 6.945435 AGAGACTCAGATACTTCTTGACTTCA 59.055 38.462 5.02 0.00 0.00 3.02
402 454 6.919721 AGACTCAGATACTTCTTGACTTCAC 58.080 40.000 0.00 0.00 0.00 3.18
403 455 6.031751 ACTCAGATACTTCTTGACTTCACC 57.968 41.667 0.00 0.00 0.00 4.02
404 456 5.777732 ACTCAGATACTTCTTGACTTCACCT 59.222 40.000 0.00 0.00 0.00 4.00
405 457 6.071616 ACTCAGATACTTCTTGACTTCACCTC 60.072 42.308 0.00 0.00 0.00 3.85
406 458 6.013379 TCAGATACTTCTTGACTTCACCTCT 58.987 40.000 0.00 0.00 0.00 3.69
407 459 6.495181 TCAGATACTTCTTGACTTCACCTCTT 59.505 38.462 0.00 0.00 0.00 2.85
408 460 7.015682 TCAGATACTTCTTGACTTCACCTCTTT 59.984 37.037 0.00 0.00 0.00 2.52
409 461 7.330700 CAGATACTTCTTGACTTCACCTCTTTC 59.669 40.741 0.00 0.00 0.00 2.62
410 462 5.622346 ACTTCTTGACTTCACCTCTTTCT 57.378 39.130 0.00 0.00 0.00 2.52
411 463 5.995446 ACTTCTTGACTTCACCTCTTTCTT 58.005 37.500 0.00 0.00 0.00 2.52
412 464 7.125792 ACTTCTTGACTTCACCTCTTTCTTA 57.874 36.000 0.00 0.00 0.00 2.10
413 465 7.565680 ACTTCTTGACTTCACCTCTTTCTTAA 58.434 34.615 0.00 0.00 0.00 1.85
414 466 8.214364 ACTTCTTGACTTCACCTCTTTCTTAAT 58.786 33.333 0.00 0.00 0.00 1.40
415 467 8.980481 TTCTTGACTTCACCTCTTTCTTAATT 57.020 30.769 0.00 0.00 0.00 1.40
416 468 8.383318 TCTTGACTTCACCTCTTTCTTAATTG 57.617 34.615 0.00 0.00 0.00 2.32
417 469 7.993183 TCTTGACTTCACCTCTTTCTTAATTGT 59.007 33.333 0.00 0.00 0.00 2.71
418 470 7.730364 TGACTTCACCTCTTTCTTAATTGTC 57.270 36.000 0.00 0.00 0.00 3.18
419 471 7.279615 TGACTTCACCTCTTTCTTAATTGTCA 58.720 34.615 0.00 0.00 0.00 3.58
420 472 7.939039 TGACTTCACCTCTTTCTTAATTGTCAT 59.061 33.333 0.00 0.00 0.00 3.06
421 473 8.697507 ACTTCACCTCTTTCTTAATTGTCATT 57.302 30.769 0.00 0.00 0.00 2.57
422 474 9.136323 ACTTCACCTCTTTCTTAATTGTCATTT 57.864 29.630 0.00 0.00 0.00 2.32
423 475 9.971922 CTTCACCTCTTTCTTAATTGTCATTTT 57.028 29.630 0.00 0.00 0.00 1.82
427 479 9.860898 ACCTCTTTCTTAATTGTCATTTTATGC 57.139 29.630 0.00 0.00 0.00 3.14
428 480 9.013490 CCTCTTTCTTAATTGTCATTTTATGCG 57.987 33.333 0.00 0.00 0.00 4.73
429 481 9.559958 CTCTTTCTTAATTGTCATTTTATGCGT 57.440 29.630 0.00 0.00 0.00 5.24
430 482 9.340695 TCTTTCTTAATTGTCATTTTATGCGTG 57.659 29.630 0.00 0.00 0.00 5.34
431 483 9.340695 CTTTCTTAATTGTCATTTTATGCGTGA 57.659 29.630 0.00 0.00 0.00 4.35
432 484 8.667987 TTCTTAATTGTCATTTTATGCGTGAC 57.332 30.769 0.00 0.00 41.90 3.67
433 485 7.247728 TCTTAATTGTCATTTTATGCGTGACC 58.752 34.615 0.00 0.00 41.09 4.02
434 486 5.643379 AATTGTCATTTTATGCGTGACCT 57.357 34.783 0.00 0.00 41.09 3.85
435 487 4.678509 TTGTCATTTTATGCGTGACCTC 57.321 40.909 0.00 0.00 41.09 3.85
436 488 3.669536 TGTCATTTTATGCGTGACCTCA 58.330 40.909 0.00 0.00 41.09 3.86
437 489 3.435327 TGTCATTTTATGCGTGACCTCAC 59.565 43.478 0.00 0.00 41.09 3.51
438 490 3.435327 GTCATTTTATGCGTGACCTCACA 59.565 43.478 6.27 0.00 46.75 3.58
439 491 4.068599 TCATTTTATGCGTGACCTCACAA 58.931 39.130 6.27 0.00 46.75 3.33
440 492 3.889196 TTTTATGCGTGACCTCACAAC 57.111 42.857 6.27 0.00 46.75 3.32
441 493 2.831685 TTATGCGTGACCTCACAACT 57.168 45.000 6.27 0.00 46.75 3.16
442 494 3.945981 TTATGCGTGACCTCACAACTA 57.054 42.857 6.27 0.00 46.75 2.24
443 495 2.370281 ATGCGTGACCTCACAACTAG 57.630 50.000 6.27 0.00 46.75 2.57
444 496 0.319555 TGCGTGACCTCACAACTAGC 60.320 55.000 6.27 1.55 46.75 3.42
445 497 0.319555 GCGTGACCTCACAACTAGCA 60.320 55.000 6.27 0.00 46.75 3.49
446 498 1.872237 GCGTGACCTCACAACTAGCAA 60.872 52.381 6.27 0.00 46.75 3.91
447 499 2.061773 CGTGACCTCACAACTAGCAAG 58.938 52.381 6.27 0.00 46.75 4.01
448 500 2.545952 CGTGACCTCACAACTAGCAAGT 60.546 50.000 6.27 0.00 46.75 3.16
449 501 3.060602 GTGACCTCACAACTAGCAAGTC 58.939 50.000 0.31 0.00 45.75 3.01
450 502 2.698274 TGACCTCACAACTAGCAAGTCA 59.302 45.455 0.00 0.00 33.75 3.41
451 503 3.243873 TGACCTCACAACTAGCAAGTCAG 60.244 47.826 0.00 0.00 33.75 3.51
452 504 2.037772 ACCTCACAACTAGCAAGTCAGG 59.962 50.000 0.00 0.00 33.75 3.86
453 505 2.300152 CCTCACAACTAGCAAGTCAGGA 59.700 50.000 0.00 0.00 33.75 3.86
454 506 3.321497 CTCACAACTAGCAAGTCAGGAC 58.679 50.000 0.00 0.00 33.75 3.85
455 507 2.965831 TCACAACTAGCAAGTCAGGACT 59.034 45.455 0.00 0.00 44.94 3.85
456 508 4.149598 TCACAACTAGCAAGTCAGGACTA 58.850 43.478 1.78 0.00 41.58 2.59
457 509 4.772624 TCACAACTAGCAAGTCAGGACTAT 59.227 41.667 1.78 0.00 41.58 2.12
458 510 5.105716 TCACAACTAGCAAGTCAGGACTATC 60.106 44.000 1.78 0.00 41.58 2.08
459 511 4.142359 ACAACTAGCAAGTCAGGACTATCG 60.142 45.833 1.78 0.00 41.58 2.92
460 512 3.887352 ACTAGCAAGTCAGGACTATCGA 58.113 45.455 1.78 0.00 41.58 3.59
461 513 3.628487 ACTAGCAAGTCAGGACTATCGAC 59.372 47.826 1.78 0.00 41.58 4.20
489 541 6.266330 TCACATCATTAGCAGCTCACTATAGT 59.734 38.462 0.00 0.00 0.00 2.12
496 548 3.383185 AGCAGCTCACTATAGTTCTGGAC 59.617 47.826 19.82 10.11 0.00 4.02
503 555 4.096311 CACTATAGTTCTGGACAACGTCG 58.904 47.826 1.56 0.00 32.65 5.12
509 561 2.442212 TCTGGACAACGTCGCAAATA 57.558 45.000 0.00 0.00 32.65 1.40
547 615 4.098914 TCCCAGTTCATTTTGCACTAGT 57.901 40.909 0.00 0.00 0.00 2.57
548 616 4.072131 TCCCAGTTCATTTTGCACTAGTC 58.928 43.478 0.00 0.00 0.00 2.59
549 617 3.820467 CCCAGTTCATTTTGCACTAGTCA 59.180 43.478 0.00 0.00 0.00 3.41
550 618 4.320494 CCCAGTTCATTTTGCACTAGTCAC 60.320 45.833 0.00 0.00 0.00 3.67
562 637 1.688735 ACTAGTCACTTGCTCTGCACA 59.311 47.619 0.00 0.00 38.71 4.57
564 639 1.520494 AGTCACTTGCTCTGCACATG 58.480 50.000 0.00 0.00 38.71 3.21
566 641 1.196354 GTCACTTGCTCTGCACATGTC 59.804 52.381 0.00 0.00 38.71 3.06
568 643 0.109153 ACTTGCTCTGCACATGTCCA 59.891 50.000 0.00 0.00 38.71 4.02
570 645 0.397564 TTGCTCTGCACATGTCCAGA 59.602 50.000 18.38 18.38 38.71 3.86
571 646 0.321034 TGCTCTGCACATGTCCAGAC 60.321 55.000 15.67 12.64 34.60 3.51
572 647 0.321034 GCTCTGCACATGTCCAGACA 60.321 55.000 15.67 2.42 46.44 3.41
573 648 1.436600 CTCTGCACATGTCCAGACAC 58.563 55.000 15.67 0.00 45.05 3.67
574 649 0.758123 TCTGCACATGTCCAGACACA 59.242 50.000 15.67 0.00 45.05 3.72
575 650 1.140652 TCTGCACATGTCCAGACACAA 59.859 47.619 15.67 0.00 45.05 3.33
576 651 2.156917 CTGCACATGTCCAGACACAAT 58.843 47.619 11.61 0.00 45.05 2.71
577 652 1.881324 TGCACATGTCCAGACACAATG 59.119 47.619 1.88 0.56 45.05 2.82
578 653 2.153645 GCACATGTCCAGACACAATGA 58.846 47.619 1.88 0.00 45.05 2.57
579 654 2.095567 GCACATGTCCAGACACAATGAC 60.096 50.000 1.88 0.00 45.05 3.06
580 655 3.405831 CACATGTCCAGACACAATGACT 58.594 45.455 1.88 0.00 45.05 3.41
581 656 3.187842 CACATGTCCAGACACAATGACTG 59.812 47.826 1.88 0.00 45.05 3.51
582 657 3.071457 ACATGTCCAGACACAATGACTGA 59.929 43.478 1.88 0.00 45.05 3.41
583 658 3.111853 TGTCCAGACACAATGACTGAC 57.888 47.619 9.41 6.82 41.47 3.51
584 659 2.700371 TGTCCAGACACAATGACTGACT 59.300 45.455 9.41 0.00 41.47 3.41
585 660 3.134623 TGTCCAGACACAATGACTGACTT 59.865 43.478 9.41 0.00 41.47 3.01
586 661 4.130118 GTCCAGACACAATGACTGACTTT 58.870 43.478 9.41 0.00 41.47 2.66
587 662 4.576463 GTCCAGACACAATGACTGACTTTT 59.424 41.667 9.41 0.00 41.47 2.27
588 663 4.576053 TCCAGACACAATGACTGACTTTTG 59.424 41.667 9.41 0.00 41.47 2.44
589 664 4.576053 CCAGACACAATGACTGACTTTTGA 59.424 41.667 9.41 0.00 41.47 2.69
590 665 5.504665 CCAGACACAATGACTGACTTTTGAC 60.505 44.000 9.41 0.00 41.47 3.18
591 666 5.295292 CAGACACAATGACTGACTTTTGACT 59.705 40.000 2.68 0.00 41.47 3.41
592 667 5.295292 AGACACAATGACTGACTTTTGACTG 59.705 40.000 0.00 0.00 0.00 3.51
593 668 4.943705 ACACAATGACTGACTTTTGACTGT 59.056 37.500 0.00 0.00 0.00 3.55
594 669 5.415701 ACACAATGACTGACTTTTGACTGTT 59.584 36.000 0.00 0.00 0.00 3.16
595 670 5.740569 CACAATGACTGACTTTTGACTGTTG 59.259 40.000 0.00 0.00 0.00 3.33
596 671 5.415701 ACAATGACTGACTTTTGACTGTTGT 59.584 36.000 0.00 0.00 0.00 3.32
597 672 6.071952 ACAATGACTGACTTTTGACTGTTGTT 60.072 34.615 0.00 0.00 0.00 2.83
598 673 5.545658 TGACTGACTTTTGACTGTTGTTC 57.454 39.130 0.00 0.00 0.00 3.18
599 674 4.092821 TGACTGACTTTTGACTGTTGTTCG 59.907 41.667 0.00 0.00 0.00 3.95
600 675 3.181510 ACTGACTTTTGACTGTTGTTCGC 60.182 43.478 0.00 0.00 0.00 4.70
601 676 3.006940 TGACTTTTGACTGTTGTTCGCT 58.993 40.909 0.00 0.00 0.00 4.93
602 677 4.185394 TGACTTTTGACTGTTGTTCGCTA 58.815 39.130 0.00 0.00 0.00 4.26
617 692 8.021396 TGTTGTTCGCTAGCTATATGTATGTAG 58.979 37.037 13.93 0.00 0.00 2.74
619 694 6.095021 TGTTCGCTAGCTATATGTATGTAGGG 59.905 42.308 13.93 0.00 0.00 3.53
624 699 7.148052 CGCTAGCTATATGTATGTAGGGTTCTT 60.148 40.741 13.93 0.00 0.00 2.52
626 701 7.483580 AGCTATATGTATGTAGGGTTCTTCC 57.516 40.000 0.00 0.00 0.00 3.46
629 704 8.035984 GCTATATGTATGTAGGGTTCTTCCTTC 58.964 40.741 0.00 0.00 38.30 3.46
649 724 6.958192 TCCTTCCTGGTTACAAATAGACTAGT 59.042 38.462 0.00 0.00 37.07 2.57
654 729 6.480320 CCTGGTTACAAATAGACTAGTCATGC 59.520 42.308 24.44 0.00 0.00 4.06
679 755 6.839657 CCTATATTTATACCCCCGACTCATCT 59.160 42.308 0.00 0.00 0.00 2.90
681 757 3.605726 TTATACCCCCGACTCATCTGA 57.394 47.619 0.00 0.00 0.00 3.27
725 801 3.128415 CCATGTCCAATTGTCAATACGCA 59.872 43.478 4.43 0.00 0.00 5.24
726 802 4.202040 CCATGTCCAATTGTCAATACGCAT 60.202 41.667 4.43 0.00 0.00 4.73
727 803 4.354071 TGTCCAATTGTCAATACGCATG 57.646 40.909 4.43 0.00 0.00 4.06
728 804 3.108144 GTCCAATTGTCAATACGCATGC 58.892 45.455 7.91 7.91 0.00 4.06
753 829 5.189736 TGTTTAGTCATTCAGTCCCTATGCT 59.810 40.000 0.00 0.00 0.00 3.79
833 909 5.235516 TCAGTTCCGAATTTCTCCTTGTAC 58.764 41.667 0.00 0.00 0.00 2.90
843 931 7.095940 CGAATTTCTCCTTGTACGTTTACAGAA 60.096 37.037 0.00 0.00 39.44 3.02
844 932 6.833342 TTTCTCCTTGTACGTTTACAGAAC 57.167 37.500 0.00 0.00 39.44 3.01
859 947 3.725490 ACAGAACAGAGTACGTTTTCCC 58.275 45.455 0.00 0.00 0.00 3.97
879 967 3.377656 CCTGGTGGCGTACTCAGT 58.622 61.111 0.00 0.00 0.00 3.41
881 969 1.532604 CCTGGTGGCGTACTCAGTGA 61.533 60.000 0.00 0.00 0.00 3.41
882 970 0.532573 CTGGTGGCGTACTCAGTGAT 59.467 55.000 0.00 0.00 0.00 3.06
883 971 0.246360 TGGTGGCGTACTCAGTGATG 59.754 55.000 0.00 0.00 0.00 3.07
884 972 0.530744 GGTGGCGTACTCAGTGATGA 59.469 55.000 0.00 0.00 0.00 2.92
885 973 1.469940 GGTGGCGTACTCAGTGATGAG 60.470 57.143 3.76 3.76 41.45 2.90
887 975 1.472878 TGGCGTACTCAGTGATGAGTC 59.527 52.381 13.80 6.10 45.09 3.36
888 976 1.472878 GGCGTACTCAGTGATGAGTCA 59.527 52.381 13.80 0.00 45.09 3.41
901 989 0.250467 TGAGTCACTGAGGGCAAAGC 60.250 55.000 0.00 0.00 0.00 3.51
946 1037 2.203422 TGGACCGTGGGGCAAAAG 60.203 61.111 0.00 0.00 36.48 2.27
947 1038 2.203437 GGACCGTGGGGCAAAAGT 60.203 61.111 0.00 0.00 36.48 2.66
948 1039 1.830847 GGACCGTGGGGCAAAAGTT 60.831 57.895 0.00 0.00 36.48 2.66
949 1040 1.396607 GGACCGTGGGGCAAAAGTTT 61.397 55.000 0.00 0.00 36.48 2.66
950 1041 0.462375 GACCGTGGGGCAAAAGTTTT 59.538 50.000 0.00 0.00 36.48 2.43
951 1042 0.462375 ACCGTGGGGCAAAAGTTTTC 59.538 50.000 0.00 0.00 36.48 2.29
952 1043 0.750249 CCGTGGGGCAAAAGTTTTCT 59.250 50.000 0.00 0.00 0.00 2.52
954 1045 4.948451 ACCGTGGGGCAAAAGTTTTCTTT 61.948 43.478 0.00 0.00 43.84 2.52
975 1066 0.963856 CCCCTTAGAAAACCGTGGGC 60.964 60.000 0.00 0.00 33.63 5.36
980 1071 0.108207 TAGAAAACCGTGGGCCGAAA 59.892 50.000 0.00 0.00 39.56 3.46
1328 1426 3.332034 CTGACATGCTGTGACTGATTCA 58.668 45.455 0.00 0.00 0.00 2.57
1333 1431 2.759191 TGCTGTGACTGATTCAGTGAC 58.241 47.619 24.19 24.19 45.44 3.67
1342 1442 6.634436 GTGACTGATTCAGTGACATTTGTTTC 59.366 38.462 25.46 8.61 45.33 2.78
1343 1443 5.751680 ACTGATTCAGTGACATTTGTTTCG 58.248 37.500 18.35 0.00 43.63 3.46
1393 1493 1.770294 AGGAGTTGATCGAGGGAGAC 58.230 55.000 0.00 0.00 0.00 3.36
1436 1536 2.633481 ACGGAAGGTTTGCTACTCTCTT 59.367 45.455 0.00 0.00 0.00 2.85
1437 1537 3.254892 CGGAAGGTTTGCTACTCTCTTC 58.745 50.000 0.00 0.00 0.00 2.87
1452 1552 3.462982 TCTCTTCTGCACGTTGCTTTTA 58.537 40.909 10.54 0.00 45.31 1.52
1453 1553 3.494626 TCTCTTCTGCACGTTGCTTTTAG 59.505 43.478 10.54 1.57 45.31 1.85
1454 1554 3.202906 TCTTCTGCACGTTGCTTTTAGT 58.797 40.909 10.54 0.00 45.31 2.24
1455 1555 4.373527 TCTTCTGCACGTTGCTTTTAGTA 58.626 39.130 10.54 0.00 45.31 1.82
1456 1556 4.812091 TCTTCTGCACGTTGCTTTTAGTAA 59.188 37.500 10.54 0.00 45.31 2.24
1457 1557 5.294799 TCTTCTGCACGTTGCTTTTAGTAAA 59.705 36.000 10.54 0.00 45.31 2.01
1458 1558 5.682943 TCTGCACGTTGCTTTTAGTAAAT 57.317 34.783 10.54 0.00 45.31 1.40
1459 1559 5.448438 TCTGCACGTTGCTTTTAGTAAATG 58.552 37.500 10.54 0.20 45.31 2.32
1460 1560 5.008217 TCTGCACGTTGCTTTTAGTAAATGT 59.992 36.000 10.54 0.00 45.31 2.71
1461 1561 5.583495 TGCACGTTGCTTTTAGTAAATGTT 58.417 33.333 10.54 0.00 45.31 2.71
1462 1562 6.037098 TGCACGTTGCTTTTAGTAAATGTTT 58.963 32.000 10.54 0.00 45.31 2.83
1463 1563 6.531948 TGCACGTTGCTTTTAGTAAATGTTTT 59.468 30.769 10.54 0.00 45.31 2.43
1464 1564 7.701078 TGCACGTTGCTTTTAGTAAATGTTTTA 59.299 29.630 10.54 0.00 45.31 1.52
1465 1565 8.533153 GCACGTTGCTTTTAGTAAATGTTTTAA 58.467 29.630 9.52 0.57 40.96 1.52
1466 1566 9.823979 CACGTTGCTTTTAGTAAATGTTTTAAC 57.176 29.630 9.52 8.84 0.00 2.01
1467 1567 9.791820 ACGTTGCTTTTAGTAAATGTTTTAACT 57.208 25.926 9.52 0.00 0.00 2.24
1471 1571 9.810545 TGCTTTTAGTAAATGTTTTAACTTGCT 57.189 25.926 9.52 0.00 0.00 3.91
1507 1632 4.346127 TGATCATGAATCGGGAATCAGAGT 59.654 41.667 0.00 0.00 37.17 3.24
1536 1661 2.380084 TCTGGTACGATTCTGGTTGC 57.620 50.000 0.00 0.00 0.00 4.17
1559 1684 6.321873 CAATTTTGCATACATGTTTCGAGG 57.678 37.500 2.30 0.00 0.00 4.63
1599 1724 4.159693 TGGTGTAAGCGTAGATTGACTGAT 59.840 41.667 0.00 0.00 36.12 2.90
1603 1728 3.533606 AGCGTAGATTGACTGATGCTT 57.466 42.857 0.00 0.00 31.26 3.91
1608 1733 5.463392 GCGTAGATTGACTGATGCTTGAATA 59.537 40.000 0.00 0.00 0.00 1.75
1611 1736 8.554528 CGTAGATTGACTGATGCTTGAATATTT 58.445 33.333 0.00 0.00 0.00 1.40
1643 1768 2.481185 CACAAAACCATGCCATTTCTGC 59.519 45.455 0.00 0.00 0.00 4.26
1666 1791 6.492429 TGCACCTTTAGTTCTTCTCTGTAGTA 59.508 38.462 0.00 0.00 0.00 1.82
1701 1826 1.602377 GTGTAGGCCATTACGGAATGC 59.398 52.381 15.31 10.19 41.09 3.56
1756 1881 8.984891 AATGAAATTTAATGTTCGAGCAATCA 57.015 26.923 5.91 3.45 26.74 2.57
1836 1969 2.203788 TCAAGCGGGGTGGAGAGT 60.204 61.111 0.00 0.00 0.00 3.24
1870 2003 3.053693 CCAGTTGGAACATGGATAAGGGA 60.054 47.826 0.00 0.00 39.30 4.20
1913 2046 6.769822 AGTCCTTCAATTATATGCCAGAGTTG 59.230 38.462 0.00 0.00 0.00 3.16
1975 2119 8.278408 CAGGTAGAAAACAATACATGATCATCG 58.722 37.037 4.86 4.49 36.13 3.84
2096 2240 9.120538 CAGTATTTATAGGGTGCAAATGTAGTT 57.879 33.333 0.00 0.00 0.00 2.24
2318 2465 6.240549 ACCAATGTACAAGAATCTCCTAGG 57.759 41.667 0.82 0.82 0.00 3.02
2334 2481 9.453830 AATCTCCTAGGAATAGATTGGTTTAGT 57.546 33.333 19.06 0.00 38.28 2.24
2371 2518 0.615331 TCCTCCAGACAATCCAGTGC 59.385 55.000 0.00 0.00 0.00 4.40
2372 2519 0.617413 CCTCCAGACAATCCAGTGCT 59.383 55.000 0.00 0.00 0.00 4.40
2389 2537 3.019564 GTGCTGCCCTATTGAAACATCT 58.980 45.455 0.00 0.00 0.00 2.90
2440 2588 6.151480 TGTTGATTTCATATTCAGCAGCTTGA 59.849 34.615 0.00 0.00 30.85 3.02
2667 2815 5.068067 TGACTCATGGGAAATTACATGCATG 59.932 40.000 25.09 25.09 43.11 4.06
2794 2942 4.081365 TGCGACCACTCAACTTATTATCCA 60.081 41.667 0.00 0.00 0.00 3.41
2908 3108 7.490000 TCTAGAATTATGTTTTCTCTCGGTCC 58.510 38.462 0.00 0.00 35.19 4.46
2952 3182 2.969821 ACCTCTGTATTGCCCAAACA 57.030 45.000 0.00 0.00 0.00 2.83
2962 3192 2.583024 TGCCCAAACACTGATGATCA 57.417 45.000 0.00 0.00 0.00 2.92
2982 3212 5.114764 TCATGAAAGCCCTTGACATGATA 57.885 39.130 18.31 6.49 39.62 2.15
2983 3213 4.883585 TCATGAAAGCCCTTGACATGATAC 59.116 41.667 18.31 0.00 39.62 2.24
3162 3397 3.543680 ACTCATGGTTCCATACTTCCG 57.456 47.619 3.88 0.00 0.00 4.30
3305 3540 3.002791 TGCATCGTTAAAGCTCTTCAGG 58.997 45.455 0.00 0.00 0.00 3.86
3334 3569 2.007608 GAGCAGATAAACCCACCGTTC 58.992 52.381 0.00 0.00 31.78 3.95
3335 3570 1.628846 AGCAGATAAACCCACCGTTCT 59.371 47.619 0.00 0.00 31.78 3.01
3336 3571 2.007608 GCAGATAAACCCACCGTTCTC 58.992 52.381 0.00 0.00 31.78 2.87
3337 3572 2.629051 CAGATAAACCCACCGTTCTCC 58.371 52.381 0.00 0.00 31.78 3.71
3338 3573 1.558294 AGATAAACCCACCGTTCTCCC 59.442 52.381 0.00 0.00 31.78 4.30
3339 3574 0.622136 ATAAACCCACCGTTCTCCCC 59.378 55.000 0.00 0.00 31.78 4.81
3340 3575 1.491274 TAAACCCACCGTTCTCCCCC 61.491 60.000 0.00 0.00 31.78 5.40
3394 3642 6.316140 TCATAATTGTATGTTCTGTGGTCTGC 59.684 38.462 0.00 0.00 38.63 4.26
3396 3644 2.766313 TGTATGTTCTGTGGTCTGCAC 58.234 47.619 0.00 0.00 0.00 4.57
3531 3929 7.985634 AAAAACATATTAGCCTATTGCAACG 57.014 32.000 0.00 0.00 44.83 4.10
3639 4037 1.987080 ACTCCCATTAAGCTCCCCTT 58.013 50.000 0.00 0.00 37.57 3.95
3753 4277 3.941483 AGAAGCTAATTGTGTGCGCTATT 59.059 39.130 9.73 3.42 0.00 1.73
3754 4278 4.396166 AGAAGCTAATTGTGTGCGCTATTT 59.604 37.500 9.73 0.00 0.00 1.40
3838 4367 9.416794 GCGCACAGAGATATATAGCAATAATAT 57.583 33.333 0.30 0.00 0.00 1.28
3856 4385 4.927267 ATATGAAGAACCCTGTGTTGGA 57.073 40.909 0.00 0.00 37.29 3.53
3859 4388 3.221771 TGAAGAACCCTGTGTTGGATTG 58.778 45.455 0.00 0.00 37.29 2.67
3891 4420 1.523154 GGTGGCGCCTGATGTTTTGA 61.523 55.000 29.70 0.00 0.00 2.69
3893 4422 0.250684 TGGCGCCTGATGTTTTGAGA 60.251 50.000 29.70 0.00 0.00 3.27
3994 4524 4.143326 GGTATATGCATCGTCAATGACACG 60.143 45.833 14.24 0.90 37.59 4.49
4005 4535 0.599204 AATGACACGACACGGGACAC 60.599 55.000 0.00 0.00 37.77 3.67
4062 4593 1.195115 TTGCGGAGTTCAGATAGCCT 58.805 50.000 0.00 0.00 0.00 4.58
4072 4603 4.721776 AGTTCAGATAGCCTTATGGGTGAA 59.278 41.667 9.50 2.10 44.81 3.18
4075 4616 5.869579 TCAGATAGCCTTATGGGTGAATTC 58.130 41.667 9.50 0.00 44.81 2.17
4104 4646 5.189625 GTTTTTGTTGAACGTGCATGATTG 58.810 37.500 14.17 0.00 0.00 2.67
4214 4773 9.588096 AAAGAGTTTCACAATTTACCCTAGAAT 57.412 29.630 0.00 0.00 0.00 2.40
4279 4860 1.234821 GGACGATTTGTGCAAGTGGA 58.765 50.000 0.00 0.00 39.04 4.02
4284 4865 2.095768 CGATTTGTGCAAGTGGACGATT 60.096 45.455 0.00 0.00 39.39 3.34
4288 4869 3.394674 TGTGCAAGTGGACGATTTCTA 57.605 42.857 0.00 0.00 39.39 2.10
4321 4902 6.512741 CGCTACGATTGGGCTTGTTTAATATT 60.513 38.462 0.00 0.00 0.00 1.28
4340 4921 0.537143 TGCTGTTCGATTGGGCTTGT 60.537 50.000 0.00 0.00 0.00 3.16
4406 5011 3.775654 GGGACCCGCTCACCAGAG 61.776 72.222 0.00 0.00 44.96 3.35
4407 5012 2.680352 GGACCCGCTCACCAGAGA 60.680 66.667 0.00 0.00 44.98 3.10
4408 5013 2.716017 GGACCCGCTCACCAGAGAG 61.716 68.421 0.00 0.00 44.98 3.20
4409 5014 1.679305 GACCCGCTCACCAGAGAGA 60.679 63.158 0.00 0.00 44.98 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.100197 AGCTGGATGCAGTCGTAGTAA 58.900 47.619 16.22 0.00 45.94 2.24
1 2 1.405463 CAGCTGGATGCAGTCGTAGTA 59.595 52.381 16.22 0.00 45.94 1.82
2 3 0.174389 CAGCTGGATGCAGTCGTAGT 59.826 55.000 16.22 0.00 45.94 2.73
3 4 1.150567 GCAGCTGGATGCAGTCGTAG 61.151 60.000 17.12 3.06 45.77 3.51
4 5 1.153568 GCAGCTGGATGCAGTCGTA 60.154 57.895 17.12 0.00 45.77 3.43
5 6 2.435586 GCAGCTGGATGCAGTCGT 60.436 61.111 17.12 0.00 45.77 4.34
11 12 1.028330 TAGCACAAGCAGCTGGATGC 61.028 55.000 17.12 15.06 46.88 3.91
12 13 1.015109 CTAGCACAAGCAGCTGGATG 58.985 55.000 17.12 0.00 42.44 3.51
13 14 0.617413 ACTAGCACAAGCAGCTGGAT 59.383 50.000 17.12 0.00 42.44 3.41
14 15 0.321034 CACTAGCACAAGCAGCTGGA 60.321 55.000 17.12 0.00 42.44 3.86
15 16 1.919956 GCACTAGCACAAGCAGCTGG 61.920 60.000 17.12 0.00 44.94 4.85
16 17 0.954449 AGCACTAGCACAAGCAGCTG 60.954 55.000 10.11 10.11 45.49 4.24
17 18 0.610174 TAGCACTAGCACAAGCAGCT 59.390 50.000 0.00 0.00 45.49 4.24
18 19 1.442769 TTAGCACTAGCACAAGCAGC 58.557 50.000 0.00 0.00 45.49 5.25
19 20 2.223203 GCATTAGCACTAGCACAAGCAG 60.223 50.000 0.00 0.00 45.49 4.24
42 43 3.093057 TGGCTACAACATATTGGGCAA 57.907 42.857 6.35 0.00 40.42 4.52
51 52 2.764010 TCGTCTACCATGGCTACAACAT 59.236 45.455 13.04 0.00 0.00 2.71
57 58 2.661718 TGACATCGTCTACCATGGCTA 58.338 47.619 13.04 2.70 33.15 3.93
61 62 5.601662 ACCTATTTGACATCGTCTACCATG 58.398 41.667 0.00 0.00 33.15 3.66
67 68 6.525578 TCTACAACCTATTTGACATCGTCT 57.474 37.500 0.00 0.00 38.73 4.18
71 72 9.959749 TTTGTTTTCTACAACCTATTTGACATC 57.040 29.630 0.00 0.00 46.09 3.06
75 76 9.179909 TCACTTTGTTTTCTACAACCTATTTGA 57.820 29.630 0.00 0.00 46.09 2.69
177 182 2.769095 GAGCCCCTCCATGATATAGTCC 59.231 54.545 0.00 0.00 0.00 3.85
196 204 0.460987 CACGAAGGCTTAGGCAGGAG 60.461 60.000 12.07 0.00 40.87 3.69
198 206 0.036388 TTCACGAAGGCTTAGGCAGG 60.036 55.000 12.07 0.00 40.87 4.85
200 208 1.406887 GGATTCACGAAGGCTTAGGCA 60.407 52.381 12.07 0.00 40.87 4.75
201 209 1.134371 AGGATTCACGAAGGCTTAGGC 60.134 52.381 12.07 0.00 37.82 3.93
214 222 3.757947 TGTAGGAGAGTGGAGGATTCA 57.242 47.619 0.00 0.00 0.00 2.57
215 223 3.386402 CCTTGTAGGAGAGTGGAGGATTC 59.614 52.174 0.00 0.00 37.67 2.52
217 225 2.957312 GCCTTGTAGGAGAGTGGAGGAT 60.957 54.545 0.00 0.00 37.67 3.24
218 226 1.619977 GCCTTGTAGGAGAGTGGAGGA 60.620 57.143 0.00 0.00 37.67 3.71
219 227 0.827368 GCCTTGTAGGAGAGTGGAGG 59.173 60.000 0.00 0.00 37.67 4.30
220 228 1.205893 GTGCCTTGTAGGAGAGTGGAG 59.794 57.143 0.00 0.00 37.67 3.86
222 230 1.205893 GAGTGCCTTGTAGGAGAGTGG 59.794 57.143 0.00 0.00 37.67 4.00
224 237 2.175202 CAGAGTGCCTTGTAGGAGAGT 58.825 52.381 0.00 0.00 37.67 3.24
230 243 5.239306 TCAAACAATTCAGAGTGCCTTGTAG 59.761 40.000 0.00 0.00 30.33 2.74
232 245 3.953612 TCAAACAATTCAGAGTGCCTTGT 59.046 39.130 0.00 0.00 0.00 3.16
233 246 4.572985 TCAAACAATTCAGAGTGCCTTG 57.427 40.909 0.00 0.00 0.00 3.61
235 248 3.760684 GGATCAAACAATTCAGAGTGCCT 59.239 43.478 0.00 0.00 0.00 4.75
251 265 8.149647 ACTTGCAAAAATCTACATTTGGATCAA 58.850 29.630 0.00 0.00 36.86 2.57
253 267 8.538409 AACTTGCAAAAATCTACATTTGGATC 57.462 30.769 0.00 0.00 36.86 3.36
261 275 9.204570 GTCTACTAGAACTTGCAAAAATCTACA 57.795 33.333 0.00 0.00 0.00 2.74
263 277 9.424319 CTGTCTACTAGAACTTGCAAAAATCTA 57.576 33.333 0.00 7.82 0.00 1.98
272 286 6.924060 TCTTGTTTCTGTCTACTAGAACTTGC 59.076 38.462 0.00 0.00 34.14 4.01
273 287 8.353684 TCTCTTGTTTCTGTCTACTAGAACTTG 58.646 37.037 0.00 0.00 34.14 3.16
281 295 9.084533 AGAAATACTCTCTTGTTTCTGTCTACT 57.915 33.333 0.00 0.00 38.92 2.57
282 296 9.699703 AAGAAATACTCTCTTGTTTCTGTCTAC 57.300 33.333 0.00 0.00 39.92 2.59
283 297 9.698309 CAAGAAATACTCTCTTGTTTCTGTCTA 57.302 33.333 4.73 0.00 43.15 2.59
297 311 1.906574 TCGGGTGGCAAGAAATACTCT 59.093 47.619 0.00 0.00 35.13 3.24
310 324 2.033602 GGTTCTTGGGTCGGGTGG 59.966 66.667 0.00 0.00 0.00 4.61
312 326 1.072806 GTTAAGGTTCTTGGGTCGGGT 59.927 52.381 0.00 0.00 0.00 5.28
313 327 1.817357 GTTAAGGTTCTTGGGTCGGG 58.183 55.000 0.00 0.00 0.00 5.14
315 329 2.443887 TCGTTAAGGTTCTTGGGTCG 57.556 50.000 0.00 0.00 0.00 4.79
316 330 4.758165 TCAATTCGTTAAGGTTCTTGGGTC 59.242 41.667 0.00 0.00 0.00 4.46
317 331 4.721132 TCAATTCGTTAAGGTTCTTGGGT 58.279 39.130 0.00 0.00 0.00 4.51
318 332 5.699097 TTCAATTCGTTAAGGTTCTTGGG 57.301 39.130 0.00 0.00 0.00 4.12
323 337 8.265998 CACACAAATTTCAATTCGTTAAGGTTC 58.734 33.333 0.00 0.00 0.00 3.62
324 338 7.762159 ACACACAAATTTCAATTCGTTAAGGTT 59.238 29.630 0.00 0.00 0.00 3.50
333 384 7.327032 GCTTAGGAGACACACAAATTTCAATTC 59.673 37.037 0.00 0.00 0.00 2.17
347 398 4.529109 AACTCTTCTGCTTAGGAGACAC 57.471 45.455 2.14 0.00 0.00 3.67
348 399 6.127310 GGATAAACTCTTCTGCTTAGGAGACA 60.127 42.308 2.14 0.00 0.00 3.41
349 400 6.127310 TGGATAAACTCTTCTGCTTAGGAGAC 60.127 42.308 2.14 0.00 0.00 3.36
350 401 5.958380 TGGATAAACTCTTCTGCTTAGGAGA 59.042 40.000 0.00 0.00 0.00 3.71
351 402 6.227298 TGGATAAACTCTTCTGCTTAGGAG 57.773 41.667 0.00 0.00 0.00 3.69
352 403 6.814954 ATGGATAAACTCTTCTGCTTAGGA 57.185 37.500 0.00 0.00 0.00 2.94
359 411 8.231692 TGAGTCTCTATGGATAAACTCTTCTG 57.768 38.462 13.71 0.00 0.00 3.02
365 417 9.875708 AAGTATCTGAGTCTCTATGGATAAACT 57.124 33.333 0.65 0.26 0.00 2.66
377 429 7.027161 GTGAAGTCAAGAAGTATCTGAGTCTC 58.973 42.308 0.00 0.00 35.59 3.36
381 433 6.152661 AGAGGTGAAGTCAAGAAGTATCTGAG 59.847 42.308 0.00 0.00 35.59 3.35
384 436 6.926630 AAGAGGTGAAGTCAAGAAGTATCT 57.073 37.500 0.00 0.00 37.57 1.98
388 440 5.622346 AGAAAGAGGTGAAGTCAAGAAGT 57.378 39.130 0.00 0.00 0.00 3.01
396 448 8.697507 AATGACAATTAAGAAAGAGGTGAAGT 57.302 30.769 0.00 0.00 0.00 3.01
397 449 9.971922 AAAATGACAATTAAGAAAGAGGTGAAG 57.028 29.630 0.00 0.00 0.00 3.02
401 453 9.860898 GCATAAAATGACAATTAAGAAAGAGGT 57.139 29.630 0.00 0.00 0.00 3.85
402 454 9.013490 CGCATAAAATGACAATTAAGAAAGAGG 57.987 33.333 0.00 0.00 0.00 3.69
403 455 9.559958 ACGCATAAAATGACAATTAAGAAAGAG 57.440 29.630 0.00 0.00 0.00 2.85
404 456 9.340695 CACGCATAAAATGACAATTAAGAAAGA 57.659 29.630 0.00 0.00 0.00 2.52
405 457 9.340695 TCACGCATAAAATGACAATTAAGAAAG 57.659 29.630 0.00 0.00 0.00 2.62
406 458 9.123709 GTCACGCATAAAATGACAATTAAGAAA 57.876 29.630 0.00 0.00 41.94 2.52
407 459 7.753132 GGTCACGCATAAAATGACAATTAAGAA 59.247 33.333 6.00 0.00 43.73 2.52
408 460 7.120579 AGGTCACGCATAAAATGACAATTAAGA 59.879 33.333 6.00 0.00 43.73 2.10
409 461 7.250569 AGGTCACGCATAAAATGACAATTAAG 58.749 34.615 6.00 0.00 43.73 1.85
410 462 7.094592 TGAGGTCACGCATAAAATGACAATTAA 60.095 33.333 6.00 0.00 43.73 1.40
411 463 6.372937 TGAGGTCACGCATAAAATGACAATTA 59.627 34.615 6.00 0.00 43.73 1.40
412 464 5.182950 TGAGGTCACGCATAAAATGACAATT 59.817 36.000 6.00 0.00 43.73 2.32
413 465 4.699735 TGAGGTCACGCATAAAATGACAAT 59.300 37.500 6.00 0.00 43.73 2.71
414 466 4.068599 TGAGGTCACGCATAAAATGACAA 58.931 39.130 6.00 0.00 43.73 3.18
415 467 3.435327 GTGAGGTCACGCATAAAATGACA 59.565 43.478 6.00 0.00 43.73 3.58
416 468 4.003519 GTGAGGTCACGCATAAAATGAC 57.996 45.455 0.00 0.00 41.68 3.06
427 479 4.400281 GACTTGCTAGTTGTGAGGTCACG 61.400 52.174 1.43 0.00 41.34 4.35
428 480 3.060602 GACTTGCTAGTTGTGAGGTCAC 58.939 50.000 1.43 2.99 39.98 3.67
429 481 2.698274 TGACTTGCTAGTTGTGAGGTCA 59.302 45.455 1.43 0.00 33.84 4.02
430 482 3.321497 CTGACTTGCTAGTTGTGAGGTC 58.679 50.000 1.43 0.00 33.84 3.85
431 483 2.037772 CCTGACTTGCTAGTTGTGAGGT 59.962 50.000 1.43 0.00 33.84 3.85
432 484 2.300152 TCCTGACTTGCTAGTTGTGAGG 59.700 50.000 1.43 6.32 33.84 3.86
433 485 3.006323 AGTCCTGACTTGCTAGTTGTGAG 59.994 47.826 1.43 0.00 38.83 3.51
434 486 2.965831 AGTCCTGACTTGCTAGTTGTGA 59.034 45.455 1.43 0.00 38.83 3.58
435 487 3.393089 AGTCCTGACTTGCTAGTTGTG 57.607 47.619 1.43 0.00 38.83 3.33
436 488 4.142359 CGATAGTCCTGACTTGCTAGTTGT 60.142 45.833 4.94 0.00 42.54 3.32
437 489 4.096532 TCGATAGTCCTGACTTGCTAGTTG 59.903 45.833 4.94 0.00 42.54 3.16
438 490 4.096682 GTCGATAGTCCTGACTTGCTAGTT 59.903 45.833 4.94 0.00 42.54 2.24
439 491 3.628487 GTCGATAGTCCTGACTTGCTAGT 59.372 47.826 4.94 0.00 42.54 2.57
440 492 3.303461 CGTCGATAGTCCTGACTTGCTAG 60.303 52.174 4.94 0.00 42.54 3.42
441 493 2.612672 CGTCGATAGTCCTGACTTGCTA 59.387 50.000 4.94 0.00 42.54 3.49
442 494 1.402259 CGTCGATAGTCCTGACTTGCT 59.598 52.381 4.94 0.00 42.54 3.91
443 495 1.132643 ACGTCGATAGTCCTGACTTGC 59.867 52.381 4.94 0.00 42.54 4.01
444 496 3.119955 TGAACGTCGATAGTCCTGACTTG 60.120 47.826 4.94 0.00 42.54 3.16
445 497 3.079578 TGAACGTCGATAGTCCTGACTT 58.920 45.455 4.94 0.00 42.54 3.01
446 498 2.419324 GTGAACGTCGATAGTCCTGACT 59.581 50.000 0.00 5.01 45.02 3.41
447 499 2.161012 TGTGAACGTCGATAGTCCTGAC 59.839 50.000 0.00 0.00 37.40 3.51
448 500 2.429478 TGTGAACGTCGATAGTCCTGA 58.571 47.619 0.00 0.00 37.40 3.86
449 501 2.913777 TGTGAACGTCGATAGTCCTG 57.086 50.000 0.00 0.00 37.40 3.86
450 502 3.014623 TGATGTGAACGTCGATAGTCCT 58.985 45.455 0.00 0.00 34.69 3.85
451 503 3.416119 TGATGTGAACGTCGATAGTCC 57.584 47.619 0.00 0.00 34.69 3.85
452 504 5.115773 GCTAATGATGTGAACGTCGATAGTC 59.884 44.000 0.00 0.00 34.69 2.59
453 505 4.976731 GCTAATGATGTGAACGTCGATAGT 59.023 41.667 0.00 0.00 34.69 2.12
454 506 4.976116 TGCTAATGATGTGAACGTCGATAG 59.024 41.667 0.00 8.87 34.69 2.08
455 507 4.927422 TGCTAATGATGTGAACGTCGATA 58.073 39.130 0.00 0.00 34.69 2.92
456 508 3.780902 TGCTAATGATGTGAACGTCGAT 58.219 40.909 0.00 0.00 34.69 3.59
457 509 3.179048 CTGCTAATGATGTGAACGTCGA 58.821 45.455 0.00 0.00 34.69 4.20
458 510 2.285256 GCTGCTAATGATGTGAACGTCG 60.285 50.000 0.00 0.00 34.69 5.12
459 511 2.932614 AGCTGCTAATGATGTGAACGTC 59.067 45.455 0.00 0.00 0.00 4.34
460 512 2.932614 GAGCTGCTAATGATGTGAACGT 59.067 45.455 0.15 0.00 0.00 3.99
461 513 2.931969 TGAGCTGCTAATGATGTGAACG 59.068 45.455 0.15 0.00 0.00 3.95
489 541 1.588674 ATTTGCGACGTTGTCCAGAA 58.411 45.000 4.37 0.00 0.00 3.02
496 548 3.305110 AGCCTTTTTATTTGCGACGTTG 58.695 40.909 0.00 0.00 0.00 4.10
503 555 3.002791 GCTGGGAAGCCTTTTTATTTGC 58.997 45.455 0.00 0.00 0.00 3.68
509 561 1.269958 GGATGCTGGGAAGCCTTTTT 58.730 50.000 0.00 0.00 0.00 1.94
547 615 1.516161 GACATGTGCAGAGCAAGTGA 58.484 50.000 1.15 0.00 41.47 3.41
548 616 0.520404 GGACATGTGCAGAGCAAGTG 59.480 55.000 13.07 0.00 41.47 3.16
549 617 0.109153 TGGACATGTGCAGAGCAAGT 59.891 50.000 16.89 0.00 41.47 3.16
550 618 2.936928 TGGACATGTGCAGAGCAAG 58.063 52.632 16.89 0.00 41.47 4.01
562 637 3.326006 AGTCAGTCATTGTGTCTGGACAT 59.674 43.478 6.71 0.00 43.97 3.06
564 639 3.393089 AGTCAGTCATTGTGTCTGGAC 57.607 47.619 4.79 0.00 34.93 4.02
566 641 4.576053 TCAAAAGTCAGTCATTGTGTCTGG 59.424 41.667 4.79 0.00 34.93 3.86
568 643 5.295292 CAGTCAAAAGTCAGTCATTGTGTCT 59.705 40.000 0.00 0.00 0.00 3.41
570 645 4.943705 ACAGTCAAAAGTCAGTCATTGTGT 59.056 37.500 0.00 0.00 0.00 3.72
571 646 5.490139 ACAGTCAAAAGTCAGTCATTGTG 57.510 39.130 0.00 0.00 0.00 3.33
572 647 5.415701 ACAACAGTCAAAAGTCAGTCATTGT 59.584 36.000 0.00 0.00 0.00 2.71
573 648 5.883661 ACAACAGTCAAAAGTCAGTCATTG 58.116 37.500 0.00 0.00 0.00 2.82
574 649 6.515272 AACAACAGTCAAAAGTCAGTCATT 57.485 33.333 0.00 0.00 0.00 2.57
575 650 5.220662 CGAACAACAGTCAAAAGTCAGTCAT 60.221 40.000 0.00 0.00 0.00 3.06
576 651 4.092821 CGAACAACAGTCAAAAGTCAGTCA 59.907 41.667 0.00 0.00 0.00 3.41
577 652 4.578601 CGAACAACAGTCAAAAGTCAGTC 58.421 43.478 0.00 0.00 0.00 3.51
578 653 3.181510 GCGAACAACAGTCAAAAGTCAGT 60.182 43.478 0.00 0.00 0.00 3.41
579 654 3.063997 AGCGAACAACAGTCAAAAGTCAG 59.936 43.478 0.00 0.00 0.00 3.51
580 655 3.006940 AGCGAACAACAGTCAAAAGTCA 58.993 40.909 0.00 0.00 0.00 3.41
581 656 3.675467 AGCGAACAACAGTCAAAAGTC 57.325 42.857 0.00 0.00 0.00 3.01
582 657 3.002348 GCTAGCGAACAACAGTCAAAAGT 59.998 43.478 0.00 0.00 0.00 2.66
583 658 3.248602 AGCTAGCGAACAACAGTCAAAAG 59.751 43.478 9.55 0.00 0.00 2.27
584 659 3.202906 AGCTAGCGAACAACAGTCAAAA 58.797 40.909 9.55 0.00 0.00 2.44
585 660 2.833794 AGCTAGCGAACAACAGTCAAA 58.166 42.857 9.55 0.00 0.00 2.69
586 661 2.526304 AGCTAGCGAACAACAGTCAA 57.474 45.000 9.55 0.00 0.00 3.18
587 662 3.868757 ATAGCTAGCGAACAACAGTCA 57.131 42.857 9.55 0.00 0.00 3.41
588 663 5.282510 ACATATAGCTAGCGAACAACAGTC 58.717 41.667 9.55 0.00 0.00 3.51
589 664 5.263968 ACATATAGCTAGCGAACAACAGT 57.736 39.130 9.55 0.00 0.00 3.55
590 665 6.863645 ACATACATATAGCTAGCGAACAACAG 59.136 38.462 9.55 0.00 0.00 3.16
591 666 6.745116 ACATACATATAGCTAGCGAACAACA 58.255 36.000 9.55 0.00 0.00 3.33
592 667 7.485277 CCTACATACATATAGCTAGCGAACAAC 59.515 40.741 9.55 0.00 0.00 3.32
593 668 7.362660 CCCTACATACATATAGCTAGCGAACAA 60.363 40.741 9.55 0.00 0.00 2.83
594 669 6.095021 CCCTACATACATATAGCTAGCGAACA 59.905 42.308 9.55 0.00 0.00 3.18
595 670 6.095160 ACCCTACATACATATAGCTAGCGAAC 59.905 42.308 9.55 0.00 0.00 3.95
596 671 6.185511 ACCCTACATACATATAGCTAGCGAA 58.814 40.000 9.55 1.68 0.00 4.70
597 672 5.752650 ACCCTACATACATATAGCTAGCGA 58.247 41.667 9.55 4.05 0.00 4.93
598 673 6.319152 AGAACCCTACATACATATAGCTAGCG 59.681 42.308 9.55 0.00 0.00 4.26
599 674 7.648039 AGAACCCTACATACATATAGCTAGC 57.352 40.000 6.62 6.62 0.00 3.42
600 675 8.688151 GGAAGAACCCTACATACATATAGCTAG 58.312 40.741 0.00 0.00 0.00 3.42
601 676 8.399529 AGGAAGAACCCTACATACATATAGCTA 58.600 37.037 0.00 0.00 40.05 3.32
602 677 7.249715 AGGAAGAACCCTACATACATATAGCT 58.750 38.462 0.00 0.00 40.05 3.32
617 692 2.374170 TGTAACCAGGAAGGAAGAACCC 59.626 50.000 0.00 0.00 41.22 4.11
619 694 7.119407 GTCTATTTGTAACCAGGAAGGAAGAAC 59.881 40.741 0.00 0.00 41.22 3.01
624 699 6.958192 ACTAGTCTATTTGTAACCAGGAAGGA 59.042 38.462 0.00 0.00 41.22 3.36
626 701 7.837863 TGACTAGTCTATTTGTAACCAGGAAG 58.162 38.462 23.01 0.00 0.00 3.46
629 704 6.480320 GCATGACTAGTCTATTTGTAACCAGG 59.520 42.308 23.01 2.59 0.00 4.45
649 724 5.129815 GTCGGGGGTATAAATATAGGCATGA 59.870 44.000 0.00 0.00 0.00 3.07
654 729 6.839657 AGATGAGTCGGGGGTATAAATATAGG 59.160 42.308 0.00 0.00 0.00 2.57
679 755 2.257207 AGGGGTGATCGAGAAAACTCA 58.743 47.619 0.00 0.00 0.00 3.41
681 757 2.027100 GGAAGGGGTGATCGAGAAAACT 60.027 50.000 0.00 0.00 0.00 2.66
725 801 4.018960 AGGGACTGAATGACTAAACAGCAT 60.019 41.667 0.00 0.00 37.18 3.79
726 802 3.327757 AGGGACTGAATGACTAAACAGCA 59.672 43.478 0.00 0.00 37.18 4.41
727 803 3.944087 AGGGACTGAATGACTAAACAGC 58.056 45.455 0.00 0.00 37.18 4.40
728 804 5.525378 GCATAGGGACTGAATGACTAAACAG 59.475 44.000 0.00 0.00 41.52 3.16
753 829 2.565391 TGGGTCTCTGATTCGTTAGCAA 59.435 45.455 0.00 0.00 0.00 3.91
833 909 5.878261 AAACGTACTCTGTTCTGTAAACG 57.122 39.130 0.00 0.00 0.00 3.60
843 931 1.270678 GGCAGGGAAAACGTACTCTGT 60.271 52.381 15.19 0.00 37.01 3.41
844 932 1.002087 AGGCAGGGAAAACGTACTCTG 59.998 52.381 11.25 11.25 37.63 3.35
879 967 1.351076 TTGCCCTCAGTGACTCATCA 58.649 50.000 0.00 0.00 0.00 3.07
881 969 1.612726 GCTTTGCCCTCAGTGACTCAT 60.613 52.381 0.00 0.00 0.00 2.90
882 970 0.250467 GCTTTGCCCTCAGTGACTCA 60.250 55.000 0.00 0.00 0.00 3.41
883 971 0.250467 TGCTTTGCCCTCAGTGACTC 60.250 55.000 0.00 0.00 0.00 3.36
884 972 0.250640 CTGCTTTGCCCTCAGTGACT 60.251 55.000 0.00 0.00 0.00 3.41
885 973 0.536006 ACTGCTTTGCCCTCAGTGAC 60.536 55.000 0.00 0.00 39.36 3.67
886 974 0.183492 AACTGCTTTGCCCTCAGTGA 59.817 50.000 0.00 0.00 40.54 3.41
887 975 1.035139 AAACTGCTTTGCCCTCAGTG 58.965 50.000 0.00 0.00 40.54 3.66
888 976 1.035139 CAAACTGCTTTGCCCTCAGT 58.965 50.000 0.00 0.00 42.28 3.41
891 979 1.032014 TGTCAAACTGCTTTGCCCTC 58.968 50.000 0.00 0.00 37.31 4.30
901 989 2.317230 GGGTCACCGTGTCAAACTG 58.683 57.895 0.00 0.00 0.00 3.16
947 1038 5.657745 ACGGTTTTCTAAGGGGAAAAGAAAA 59.342 36.000 5.59 5.59 43.12 2.29
948 1039 5.068067 CACGGTTTTCTAAGGGGAAAAGAAA 59.932 40.000 3.13 0.00 43.12 2.52
949 1040 4.581409 CACGGTTTTCTAAGGGGAAAAGAA 59.419 41.667 3.13 0.00 43.12 2.52
950 1041 4.139038 CACGGTTTTCTAAGGGGAAAAGA 58.861 43.478 3.13 0.00 43.12 2.52
951 1042 3.254903 CCACGGTTTTCTAAGGGGAAAAG 59.745 47.826 3.13 0.00 43.12 2.27
952 1043 3.224269 CCACGGTTTTCTAAGGGGAAAA 58.776 45.455 0.00 0.00 41.17 2.29
954 1045 1.074244 CCCACGGTTTTCTAAGGGGAA 59.926 52.381 0.00 0.00 36.14 3.97
956 1047 0.963856 GCCCACGGTTTTCTAAGGGG 60.964 60.000 0.00 0.00 36.79 4.79
957 1048 0.963856 GGCCCACGGTTTTCTAAGGG 60.964 60.000 0.00 0.00 39.33 3.95
959 1050 0.320946 TCGGCCCACGGTTTTCTAAG 60.321 55.000 0.00 0.00 44.45 2.18
960 1051 0.108207 TTCGGCCCACGGTTTTCTAA 59.892 50.000 0.00 0.00 44.45 2.10
961 1052 0.108207 TTTCGGCCCACGGTTTTCTA 59.892 50.000 0.00 0.00 44.45 2.10
975 1066 3.399879 CGCAGGGTTTCAATTTCGG 57.600 52.632 0.00 0.00 0.00 4.30
1051 1148 4.468689 GCTTCCCTTCCGACCCCG 62.469 72.222 0.00 0.00 0.00 5.73
1268 1366 2.035321 GCAAACTAGAGGGAGGAGATCG 59.965 54.545 0.00 0.00 0.00 3.69
1328 1426 3.376859 TCTGCAACGAAACAAATGTCACT 59.623 39.130 0.00 0.00 0.00 3.41
1333 1431 5.914635 AGTATGTTCTGCAACGAAACAAATG 59.085 36.000 7.45 0.00 34.95 2.32
1342 1442 6.243551 CACTATGAAAGTATGTTCTGCAACG 58.756 40.000 0.00 0.00 35.76 4.10
1343 1443 6.024049 GCACTATGAAAGTATGTTCTGCAAC 58.976 40.000 0.00 0.00 35.76 4.17
1411 1511 1.414919 AGTAGCAAACCTTCCGTGTGA 59.585 47.619 0.00 0.00 30.24 3.58
1417 1517 4.249661 CAGAAGAGAGTAGCAAACCTTCC 58.750 47.826 0.00 0.00 32.70 3.46
1465 1565 4.623932 TCATGGACTGAACTAAGCAAGT 57.376 40.909 0.00 0.00 41.49 3.16
1466 1566 5.181009 TGATCATGGACTGAACTAAGCAAG 58.819 41.667 0.00 0.00 37.44 4.01
1467 1567 5.164620 TGATCATGGACTGAACTAAGCAA 57.835 39.130 0.00 0.00 37.44 3.91
1468 1568 4.824479 TGATCATGGACTGAACTAAGCA 57.176 40.909 0.00 0.00 37.44 3.91
1469 1569 5.363101 TCATGATCATGGACTGAACTAAGC 58.637 41.667 30.54 0.00 39.24 3.09
1470 1570 7.095732 CGATTCATGATCATGGACTGAACTAAG 60.096 40.741 30.54 10.27 39.24 2.18
1471 1571 6.703165 CGATTCATGATCATGGACTGAACTAA 59.297 38.462 30.54 16.85 39.24 2.24
1472 1572 6.218746 CGATTCATGATCATGGACTGAACTA 58.781 40.000 30.54 9.48 39.24 2.24
1473 1573 5.055144 CGATTCATGATCATGGACTGAACT 58.945 41.667 30.54 10.25 39.24 3.01
1474 1574 4.212847 CCGATTCATGATCATGGACTGAAC 59.787 45.833 30.54 15.89 39.24 3.18
1475 1575 4.383173 CCGATTCATGATCATGGACTGAA 58.617 43.478 30.54 20.39 39.24 3.02
1476 1576 3.244318 CCCGATTCATGATCATGGACTGA 60.244 47.826 30.54 13.22 39.24 3.41
1477 1577 3.072211 CCCGATTCATGATCATGGACTG 58.928 50.000 30.54 19.59 39.24 3.51
1507 1632 6.280643 CAGAATCGTACCAGATCCATGTAAA 58.719 40.000 0.00 0.00 0.00 2.01
1536 1661 6.092092 TCCTCGAAACATGTATGCAAAATTG 58.908 36.000 0.00 0.00 0.00 2.32
1559 1684 1.271597 ACCAGAAGCCACAACATCCTC 60.272 52.381 0.00 0.00 0.00 3.71
1599 1724 9.237187 TGTGTTGGTATTCTAAATATTCAAGCA 57.763 29.630 0.00 0.00 0.00 3.91
1608 1733 7.602265 GCATGGTTTTGTGTTGGTATTCTAAAT 59.398 33.333 0.00 0.00 0.00 1.40
1611 1736 5.047660 GGCATGGTTTTGTGTTGGTATTCTA 60.048 40.000 0.00 0.00 0.00 2.10
1643 1768 8.794553 TCTTACTACAGAGAAGAACTAAAGGTG 58.205 37.037 0.00 0.00 0.00 4.00
1666 1791 4.445448 GGCCTACACATTCCATCTCATCTT 60.445 45.833 0.00 0.00 0.00 2.40
1742 1867 2.159198 GCCCATTTGATTGCTCGAACAT 60.159 45.455 0.00 0.00 0.00 2.71
1748 1873 1.275856 TGTTGGCCCATTTGATTGCTC 59.724 47.619 0.00 0.00 0.00 4.26
1756 1881 0.251165 ACGCTACTGTTGGCCCATTT 60.251 50.000 0.00 0.00 0.00 2.32
1836 1969 3.199442 TCCAACTGGAAGATCTGGGTA 57.801 47.619 0.00 0.00 42.18 3.69
1870 2003 1.707427 ACTGAACAGGCATTCCTCCTT 59.293 47.619 6.76 0.00 41.93 3.36
1883 2016 6.422333 TGGCATATAATTGAAGGACTGAACA 58.578 36.000 0.00 0.00 0.00 3.18
1975 2119 8.311650 ACTAACTGACATCAAATACACAGTTC 57.688 34.615 12.41 0.00 43.95 3.01
2121 2265 9.575868 CAGGATCCTAAAACACTATAGTAGAGA 57.424 37.037 15.67 0.13 0.00 3.10
2243 2390 0.622665 ATGAAGGCTGAAGGACAGGG 59.377 55.000 0.00 0.00 45.82 4.45
2318 2465 7.542130 CCTTGTTTGCACTAAACCAATCTATTC 59.458 37.037 0.00 0.00 46.44 1.75
2346 2493 1.343478 GGATTGTCTGGAGGAGGAGGA 60.343 57.143 0.00 0.00 0.00 3.71
2347 2494 1.127343 GGATTGTCTGGAGGAGGAGG 58.873 60.000 0.00 0.00 0.00 4.30
2359 2506 0.253044 TAGGGCAGCACTGGATTGTC 59.747 55.000 7.70 0.00 0.00 3.18
2371 2518 7.879677 TCATACATAGATGTTTCAATAGGGCAG 59.120 37.037 0.00 0.00 41.97 4.85
2372 2519 7.661437 GTCATACATAGATGTTTCAATAGGGCA 59.339 37.037 0.00 0.00 41.97 5.36
2414 2562 6.519679 AGCTGCTGAATATGAAATCAACAA 57.480 33.333 0.00 0.00 0.00 2.83
2415 2563 6.151480 TCAAGCTGCTGAATATGAAATCAACA 59.849 34.615 1.35 0.00 0.00 3.33
2440 2588 1.938585 TTAGCACTAGCAGGACCTGT 58.061 50.000 22.58 11.85 45.49 4.00
2646 2794 5.524971 ACATGCATGTAATTTCCCATGAG 57.475 39.130 30.50 0.00 40.70 2.90
2774 2922 8.506168 TTCAATGGATAATAAGTTGAGTGGTC 57.494 34.615 0.00 0.00 31.28 4.02
2883 3083 7.490000 GGACCGAGAGAAAACATAATTCTAGA 58.510 38.462 0.00 0.00 37.26 2.43
2904 3104 1.334329 CGCAGGTAAACAAAACGGACC 60.334 52.381 0.00 0.00 0.00 4.46
2908 3108 4.141855 AGATTCGCAGGTAAACAAAACG 57.858 40.909 0.00 0.00 0.00 3.60
2952 3182 3.947612 AGGGCTTTCATGATCATCAGT 57.052 42.857 4.86 0.00 0.00 3.41
2962 3192 4.210331 GGTATCATGTCAAGGGCTTTCAT 58.790 43.478 0.00 0.00 0.00 2.57
3305 3540 4.462483 TGGGTTTATCTGCTCACCAATTTC 59.538 41.667 0.00 0.00 0.00 2.17
3338 3573 0.539669 AAACAAGCGAGGAAAGGGGG 60.540 55.000 0.00 0.00 0.00 5.40
3339 3574 0.881796 GAAACAAGCGAGGAAAGGGG 59.118 55.000 0.00 0.00 0.00 4.79
3340 3575 1.537202 CAGAAACAAGCGAGGAAAGGG 59.463 52.381 0.00 0.00 0.00 3.95
3341 3576 2.494059 TCAGAAACAAGCGAGGAAAGG 58.506 47.619 0.00 0.00 0.00 3.11
3342 3577 4.756084 AATCAGAAACAAGCGAGGAAAG 57.244 40.909 0.00 0.00 0.00 2.62
3343 3578 5.179368 CAGTAATCAGAAACAAGCGAGGAAA 59.821 40.000 0.00 0.00 0.00 3.13
3344 3579 4.690748 CAGTAATCAGAAACAAGCGAGGAA 59.309 41.667 0.00 0.00 0.00 3.36
3345 3580 4.021456 TCAGTAATCAGAAACAAGCGAGGA 60.021 41.667 0.00 0.00 0.00 3.71
3346 3581 4.245660 TCAGTAATCAGAAACAAGCGAGG 58.754 43.478 0.00 0.00 0.00 4.63
3394 3642 1.747709 CATCCTTGAAGCCCTGAGTG 58.252 55.000 0.00 0.00 0.00 3.51
3396 3644 0.255318 AGCATCCTTGAAGCCCTGAG 59.745 55.000 0.00 0.00 0.00 3.35
3639 4037 3.392947 TGTCACCAACTTCCTATGGTCAA 59.607 43.478 0.00 0.00 46.94 3.18
3753 4277 9.325198 CAGTACTCATTACATTAAGTATGCCAA 57.675 33.333 0.00 0.00 37.81 4.52
3754 4278 7.441157 GCAGTACTCATTACATTAAGTATGCCA 59.559 37.037 0.00 0.00 37.81 4.92
3838 4367 3.221771 CAATCCAACACAGGGTTCTTCA 58.778 45.455 0.00 0.00 37.72 3.02
3856 4385 1.531423 CACCTCAACTGCTCAGCAAT 58.469 50.000 0.00 0.00 38.41 3.56
3859 4388 2.331132 GCCACCTCAACTGCTCAGC 61.331 63.158 0.00 0.00 0.00 4.26
3891 4420 2.032030 CCGAACTTGCAATGTTTCGTCT 60.032 45.455 24.57 3.89 34.00 4.18
3893 4422 1.673920 ACCGAACTTGCAATGTTTCGT 59.326 42.857 24.57 16.20 34.00 3.85
3994 4524 2.011222 TCAAACAAAGTGTCCCGTGTC 58.989 47.619 0.00 0.00 0.00 3.67
4005 4535 4.026640 CACCGTGAAATGCTTCAAACAAAG 60.027 41.667 0.00 0.00 43.18 2.77
4062 4593 9.454859 ACAAAAACAAAAAGAATTCACCCATAA 57.545 25.926 8.44 0.00 0.00 1.90
4072 4603 6.794636 GCACGTTCAACAAAAACAAAAAGAAT 59.205 30.769 0.00 0.00 0.00 2.40
4075 4616 5.435557 TGCACGTTCAACAAAAACAAAAAG 58.564 33.333 0.00 0.00 0.00 2.27
4104 4646 9.564041 CGCTTATACAAATCGTTTAGTACATTC 57.436 33.333 0.00 0.00 0.00 2.67
4189 4748 9.588096 AATTCTAGGGTAAATTGTGAAACTCTT 57.412 29.630 0.00 0.00 38.04 2.85
4279 4860 1.137086 AGCGCAGGACATAGAAATCGT 59.863 47.619 11.47 0.00 0.00 3.73
4284 4865 1.385528 TCGTAGCGCAGGACATAGAA 58.614 50.000 11.47 0.00 0.00 2.10
4288 4869 0.530650 CCAATCGTAGCGCAGGACAT 60.531 55.000 11.47 0.00 0.00 3.06
4296 4877 0.802494 AAACAAGCCCAATCGTAGCG 59.198 50.000 0.00 0.00 0.00 4.26
4321 4902 0.537143 ACAAGCCCAATCGAACAGCA 60.537 50.000 0.00 0.00 0.00 4.41
4367 4948 1.303643 GCCAGTCCCTCCAAGGTTG 60.304 63.158 0.00 0.00 31.93 3.77
4406 5011 2.363147 ACGGGACTCCAGCCTCTC 60.363 66.667 0.00 0.00 0.00 3.20
4407 5012 2.363147 GACGGGACTCCAGCCTCT 60.363 66.667 0.00 0.00 0.00 3.69
4408 5013 2.569218 TAGGACGGGACTCCAGCCTC 62.569 65.000 12.28 0.00 31.94 4.70
4409 5014 1.950748 ATAGGACGGGACTCCAGCCT 61.951 60.000 13.10 13.10 31.94 4.58
4450 5055 4.148696 TCGTTATCGTTTCCTGTTTCGTTC 59.851 41.667 0.00 0.00 38.33 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.