Multiple sequence alignment - TraesCS4D01G264600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G264600 chr4D 100.000 3660 0 0 1 3660 435058018 435061677 0.000000e+00 6759.0
1 TraesCS4D01G264600 chr4D 83.986 1992 222 43 972 2906 435139960 435141911 0.000000e+00 1821.0
2 TraesCS4D01G264600 chr4D 83.838 297 35 6 2740 3030 435144870 435145159 1.670000e-68 270.0
3 TraesCS4D01G264600 chr4D 97.674 43 1 0 3314 3356 435145625 435145667 1.410000e-09 75.0
4 TraesCS4D01G264600 chr4B 89.820 1886 124 23 842 2695 535241814 535243663 0.000000e+00 2357.0
5 TraesCS4D01G264600 chr4B 84.303 1994 217 49 969 2906 535290951 535292904 0.000000e+00 1860.0
6 TraesCS4D01G264600 chr4B 95.378 952 38 2 893 1844 535205770 535206715 0.000000e+00 1509.0
7 TraesCS4D01G264600 chr4B 93.180 997 33 13 1842 2821 535218881 535219859 0.000000e+00 1432.0
8 TraesCS4D01G264600 chr4B 93.569 622 21 10 1 619 535105581 535106186 0.000000e+00 909.0
9 TraesCS4D01G264600 chr4B 86.587 671 55 18 2950 3614 535225737 535226378 0.000000e+00 708.0
10 TraesCS4D01G264600 chr4B 81.582 809 90 31 1913 2695 535295605 535296380 6.720000e-172 614.0
11 TraesCS4D01G264600 chr4B 81.196 803 104 24 1913 2695 535378046 535378821 1.450000e-168 603.0
12 TraesCS4D01G264600 chr4B 85.223 291 30 6 2740 3024 535296387 535296670 1.660000e-73 287.0
13 TraesCS4D01G264600 chr4B 89.520 229 18 1 609 831 640001016 640001244 5.980000e-73 285.0
14 TraesCS4D01G264600 chr4B 95.726 117 5 0 2836 2952 535219983 535220099 4.820000e-44 189.0
15 TraesCS4D01G264600 chr4B 88.764 89 5 2 3101 3189 535245244 535245327 1.800000e-18 104.0
16 TraesCS4D01G264600 chr4B 93.939 66 4 0 3330 3395 535246223 535246288 2.330000e-17 100.0
17 TraesCS4D01G264600 chr4A 92.584 1645 61 14 1796 3412 36409541 36411152 0.000000e+00 2305.0
18 TraesCS4D01G264600 chr4A 83.944 1993 223 39 972 2906 36473392 36475345 0.000000e+00 1818.0
19 TraesCS4D01G264600 chr4A 94.764 974 38 5 842 1807 36408197 36409165 0.000000e+00 1504.0
20 TraesCS4D01G264600 chr4A 91.214 626 44 8 1 619 36407482 36408103 0.000000e+00 841.0
21 TraesCS4D01G264600 chr4A 83.486 218 17 3 3115 3315 36532360 36532575 6.240000e-43 185.0
22 TraesCS4D01G264600 chr4A 95.349 43 2 0 3314 3356 36532679 36532721 6.560000e-08 69.4
23 TraesCS4D01G264600 chr4A 97.500 40 1 0 3617 3656 620500863 620500902 6.560000e-08 69.4
24 TraesCS4D01G264600 chr2D 91.928 223 12 3 615 831 61321161 61321383 1.280000e-79 307.0
25 TraesCS4D01G264600 chr2D 90.826 218 14 2 618 830 315063626 315063410 1.660000e-73 287.0
26 TraesCS4D01G264600 chr1A 90.336 238 17 1 611 842 553906890 553907127 1.280000e-79 307.0
27 TraesCS4D01G264600 chr2B 90.708 226 15 1 611 830 244883249 244883024 2.760000e-76 296.0
28 TraesCS4D01G264600 chr7A 90.868 219 14 1 618 830 429734705 429734487 4.620000e-74 289.0
29 TraesCS4D01G264600 chr1D 90.868 219 14 1 618 830 15293493 15293275 4.620000e-74 289.0
30 TraesCS4D01G264600 chr1B 90.455 220 15 5 618 831 455204660 455204879 5.980000e-73 285.0
31 TraesCS4D01G264600 chr3B 89.035 228 19 5 610 831 750436555 750436328 1.000000e-70 278.0
32 TraesCS4D01G264600 chrUn 100.000 42 0 0 3619 3660 267212675 267212634 1.090000e-10 78.7
33 TraesCS4D01G264600 chrUn 95.652 46 0 2 3616 3660 42172166 42172122 5.070000e-09 73.1
34 TraesCS4D01G264600 chrUn 97.561 41 0 1 3618 3658 16344312 16344351 6.560000e-08 69.4
35 TraesCS4D01G264600 chr6D 97.674 43 0 1 3615 3656 147191957 147191999 5.070000e-09 73.1
36 TraesCS4D01G264600 chr7D 97.368 38 0 1 3618 3655 561738041 561738077 3.050000e-06 63.9
37 TraesCS4D01G264600 chr5B 92.105 38 3 0 3619 3656 544904117 544904080 2.000000e-03 54.7
38 TraesCS4D01G264600 chr5D 100.000 28 0 0 3628 3655 546676852 546676879 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G264600 chr4D 435058018 435061677 3659 False 6759.000000 6759 100.000000 1 3660 1 chr4D.!!$F1 3659
1 TraesCS4D01G264600 chr4D 435139960 435145667 5707 False 722.000000 1821 88.499333 972 3356 3 chr4D.!!$F2 2384
2 TraesCS4D01G264600 chr4B 535205770 535206715 945 False 1509.000000 1509 95.378000 893 1844 1 chr4B.!!$F2 951
3 TraesCS4D01G264600 chr4B 535290951 535296670 5719 False 920.333333 1860 83.702667 969 3024 3 chr4B.!!$F8 2055
4 TraesCS4D01G264600 chr4B 535105581 535106186 605 False 909.000000 909 93.569000 1 619 1 chr4B.!!$F1 618
5 TraesCS4D01G264600 chr4B 535241814 535246288 4474 False 853.666667 2357 90.841000 842 3395 3 chr4B.!!$F7 2553
6 TraesCS4D01G264600 chr4B 535218881 535220099 1218 False 810.500000 1432 94.453000 1842 2952 2 chr4B.!!$F6 1110
7 TraesCS4D01G264600 chr4B 535225737 535226378 641 False 708.000000 708 86.587000 2950 3614 1 chr4B.!!$F3 664
8 TraesCS4D01G264600 chr4B 535378046 535378821 775 False 603.000000 603 81.196000 1913 2695 1 chr4B.!!$F4 782
9 TraesCS4D01G264600 chr4A 36473392 36475345 1953 False 1818.000000 1818 83.944000 972 2906 1 chr4A.!!$F1 1934
10 TraesCS4D01G264600 chr4A 36407482 36411152 3670 False 1550.000000 2305 92.854000 1 3412 3 chr4A.!!$F3 3411

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
832 843 0.175989 CTGAAACGGAGGGAGTAGGC 59.824 60.0 0.00 0.0 0.0 3.93 F
1288 1308 0.673644 CTTAGACCACTGCAACGGGG 60.674 60.0 6.06 0.0 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2312 6466 0.175531 TGCTCCGCAGATGATTTCGA 59.824 50.0 0.0 0.0 33.32 3.71 R
3135 11999 0.038892 CTGCCGATTGCTTGCACTTT 60.039 50.0 0.0 0.0 42.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 156 3.460857 AACTTGTGCGGGCAATTTTTA 57.539 38.095 0.00 0.00 0.00 1.52
577 588 7.598869 ACATAAGAAAAAGAAAGGAAAATCGGC 59.401 33.333 0.00 0.00 0.00 5.54
589 600 1.305930 AAATCGGCCGCAACCTTCTC 61.306 55.000 23.51 0.00 0.00 2.87
614 625 2.158667 ACCACATGGAAGGTCGAAAACT 60.159 45.455 4.53 0.00 38.94 2.66
619 630 5.347907 CACATGGAAGGTCGAAAACTAGTAC 59.652 44.000 0.00 0.00 0.00 2.73
620 631 5.245526 ACATGGAAGGTCGAAAACTAGTACT 59.754 40.000 0.00 0.00 0.00 2.73
623 634 4.381398 GGAAGGTCGAAAACTAGTACTCCC 60.381 50.000 0.00 0.00 0.00 4.30
624 635 4.044946 AGGTCGAAAACTAGTACTCCCT 57.955 45.455 0.00 0.00 0.00 4.20
625 636 4.015764 AGGTCGAAAACTAGTACTCCCTC 58.984 47.826 0.00 0.00 0.00 4.30
627 638 4.096231 GGTCGAAAACTAGTACTCCCTCTC 59.904 50.000 0.00 0.00 0.00 3.20
629 640 5.065090 GTCGAAAACTAGTACTCCCTCTCTC 59.935 48.000 0.00 0.00 0.00 3.20
630 641 4.942483 CGAAAACTAGTACTCCCTCTCTCA 59.058 45.833 0.00 0.00 0.00 3.27
632 643 4.931027 AACTAGTACTCCCTCTCTCACA 57.069 45.455 0.00 0.00 0.00 3.58
633 644 4.497291 ACTAGTACTCCCTCTCTCACAG 57.503 50.000 0.00 0.00 0.00 3.66
636 647 4.120946 AGTACTCCCTCTCTCACAGTTT 57.879 45.455 0.00 0.00 0.00 2.66
638 649 5.011586 AGTACTCCCTCTCTCACAGTTTAC 58.988 45.833 0.00 0.00 0.00 2.01
639 650 3.845860 ACTCCCTCTCTCACAGTTTACA 58.154 45.455 0.00 0.00 0.00 2.41
640 651 3.829601 ACTCCCTCTCTCACAGTTTACAG 59.170 47.826 0.00 0.00 0.00 2.74
641 652 3.165875 TCCCTCTCTCACAGTTTACAGG 58.834 50.000 0.00 0.00 0.00 4.00
643 654 2.354203 CCTCTCTCACAGTTTACAGGGC 60.354 54.545 0.00 0.00 0.00 5.19
644 655 1.272490 TCTCTCACAGTTTACAGGGCG 59.728 52.381 0.00 0.00 0.00 6.13
645 656 1.000955 CTCTCACAGTTTACAGGGCGT 59.999 52.381 0.00 0.00 0.00 5.68
646 657 1.148310 CTCACAGTTTACAGGGCGTG 58.852 55.000 5.50 5.50 0.00 5.34
647 658 0.882927 TCACAGTTTACAGGGCGTGC 60.883 55.000 7.17 0.00 0.00 5.34
648 659 1.959226 ACAGTTTACAGGGCGTGCG 60.959 57.895 7.17 0.00 0.00 5.34
649 660 3.047877 AGTTTACAGGGCGTGCGC 61.048 61.111 7.17 8.17 41.06 6.09
650 661 4.439472 GTTTACAGGGCGTGCGCG 62.439 66.667 16.86 16.86 43.06 6.86
651 662 4.973055 TTTACAGGGCGTGCGCGT 62.973 61.111 22.18 2.94 43.06 6.01
653 664 4.781959 TACAGGGCGTGCGCGTAC 62.782 66.667 22.18 17.94 43.06 3.67
658 669 4.183686 GGCGTGCGCGTACTCCTA 62.184 66.667 26.13 0.00 43.06 2.94
659 670 2.651232 GCGTGCGCGTACTCCTAG 60.651 66.667 24.56 10.08 40.81 3.02
660 671 2.024305 CGTGCGCGTACTCCTAGG 59.976 66.667 24.56 0.82 0.00 3.02
661 672 2.758089 CGTGCGCGTACTCCTAGGT 61.758 63.158 24.56 0.00 0.00 3.08
662 673 1.063811 GTGCGCGTACTCCTAGGTC 59.936 63.158 20.55 0.00 0.00 3.85
663 674 2.327244 GCGCGTACTCCTAGGTCG 59.673 66.667 8.43 10.72 0.00 4.79
665 676 1.640604 CGCGTACTCCTAGGTCGTC 59.359 63.158 9.08 5.93 0.00 4.20
666 677 1.086067 CGCGTACTCCTAGGTCGTCA 61.086 60.000 9.08 0.00 0.00 4.35
667 678 1.089920 GCGTACTCCTAGGTCGTCAA 58.910 55.000 9.08 0.00 0.00 3.18
668 679 1.674962 GCGTACTCCTAGGTCGTCAAT 59.325 52.381 9.08 0.00 0.00 2.57
670 681 3.428589 GCGTACTCCTAGGTCGTCAATTT 60.429 47.826 9.08 0.00 0.00 1.82
671 682 4.103357 CGTACTCCTAGGTCGTCAATTTG 58.897 47.826 9.08 0.00 0.00 2.32
673 684 5.450137 CGTACTCCTAGGTCGTCAATTTGAT 60.450 44.000 9.08 0.00 0.00 2.57
676 687 7.125792 ACTCCTAGGTCGTCAATTTGATAAT 57.874 36.000 9.08 0.00 0.00 1.28
678 689 8.142551 ACTCCTAGGTCGTCAATTTGATAATAC 58.857 37.037 9.08 0.00 0.00 1.89
680 691 8.479689 TCCTAGGTCGTCAATTTGATAATACAA 58.520 33.333 9.08 0.00 0.00 2.41
736 747 9.450807 AAACTTCAGATGTTCTATTTTCAAACG 57.549 29.630 2.28 0.00 0.00 3.60
737 748 7.584987 ACTTCAGATGTTCTATTTTCAAACGG 58.415 34.615 0.00 0.00 0.00 4.44
738 749 7.228706 ACTTCAGATGTTCTATTTTCAAACGGT 59.771 33.333 0.00 0.00 0.00 4.83
739 750 8.610248 TTCAGATGTTCTATTTTCAAACGGTA 57.390 30.769 0.00 0.00 0.00 4.02
740 751 8.786826 TCAGATGTTCTATTTTCAAACGGTAT 57.213 30.769 0.00 0.00 0.00 2.73
741 752 9.878667 TCAGATGTTCTATTTTCAAACGGTATA 57.121 29.630 0.00 0.00 0.00 1.47
752 763 8.853469 TTTTCAAACGGTATAAATTTCGTGTT 57.147 26.923 3.73 0.00 35.93 3.32
753 764 9.941664 TTTTCAAACGGTATAAATTTCGTGTTA 57.058 25.926 3.73 0.00 35.93 2.41
794 805 6.976934 CCATAAAATTGGCAACCTAGGTAT 57.023 37.500 16.67 0.83 0.00 2.73
796 807 7.882179 CCATAAAATTGGCAACCTAGGTATAC 58.118 38.462 16.67 8.74 0.00 1.47
797 808 7.308348 CCATAAAATTGGCAACCTAGGTATACG 60.308 40.741 16.67 5.52 0.00 3.06
798 809 2.607631 TTGGCAACCTAGGTATACGC 57.392 50.000 16.67 15.11 0.00 4.42
799 810 0.386476 TGGCAACCTAGGTATACGCG 59.614 55.000 16.67 3.53 0.00 6.01
800 811 0.386838 GGCAACCTAGGTATACGCGT 59.613 55.000 19.17 19.17 0.00 6.01
801 812 1.608590 GGCAACCTAGGTATACGCGTA 59.391 52.381 22.94 22.94 0.00 4.42
802 813 2.351157 GGCAACCTAGGTATACGCGTAG 60.351 54.545 24.78 11.28 0.00 3.51
803 814 2.351157 GCAACCTAGGTATACGCGTAGG 60.351 54.545 24.78 21.85 46.64 3.18
804 815 3.141398 CAACCTAGGTATACGCGTAGGA 58.859 50.000 25.95 14.03 45.08 2.94
805 816 2.772287 ACCTAGGTATACGCGTAGGAC 58.228 52.381 25.95 22.99 45.08 3.85
806 817 2.370189 ACCTAGGTATACGCGTAGGACT 59.630 50.000 25.95 22.11 45.08 3.85
807 818 3.181450 ACCTAGGTATACGCGTAGGACTT 60.181 47.826 25.95 21.88 45.08 3.01
808 819 3.188048 CCTAGGTATACGCGTAGGACTTG 59.812 52.174 24.78 19.23 45.08 3.16
809 820 2.648059 AGGTATACGCGTAGGACTTGT 58.352 47.619 24.78 8.30 0.00 3.16
810 821 3.808728 AGGTATACGCGTAGGACTTGTA 58.191 45.455 24.78 7.25 0.00 2.41
811 822 4.199310 AGGTATACGCGTAGGACTTGTAA 58.801 43.478 24.78 0.00 0.00 2.41
812 823 4.640201 AGGTATACGCGTAGGACTTGTAAA 59.360 41.667 24.78 0.00 0.00 2.01
813 824 4.735338 GGTATACGCGTAGGACTTGTAAAC 59.265 45.833 24.78 6.78 0.00 2.01
814 825 4.708726 ATACGCGTAGGACTTGTAAACT 57.291 40.909 24.78 0.00 0.00 2.66
815 826 2.669364 ACGCGTAGGACTTGTAAACTG 58.331 47.619 11.67 0.00 0.00 3.16
816 827 2.294233 ACGCGTAGGACTTGTAAACTGA 59.706 45.455 11.67 0.00 0.00 3.41
817 828 3.243501 ACGCGTAGGACTTGTAAACTGAA 60.244 43.478 11.67 0.00 0.00 3.02
818 829 3.737266 CGCGTAGGACTTGTAAACTGAAA 59.263 43.478 0.00 0.00 0.00 2.69
819 830 4.375706 CGCGTAGGACTTGTAAACTGAAAC 60.376 45.833 0.00 0.00 0.00 2.78
820 831 4.375706 GCGTAGGACTTGTAAACTGAAACG 60.376 45.833 0.00 0.00 0.00 3.60
821 832 4.149396 CGTAGGACTTGTAAACTGAAACGG 59.851 45.833 0.00 0.00 0.00 4.44
822 833 4.411256 AGGACTTGTAAACTGAAACGGA 57.589 40.909 0.00 0.00 0.00 4.69
823 834 4.377897 AGGACTTGTAAACTGAAACGGAG 58.622 43.478 0.00 0.00 0.00 4.63
824 835 3.497262 GGACTTGTAAACTGAAACGGAGG 59.503 47.826 0.00 0.00 0.00 4.30
825 836 3.473625 ACTTGTAAACTGAAACGGAGGG 58.526 45.455 0.00 0.00 0.00 4.30
826 837 3.135167 ACTTGTAAACTGAAACGGAGGGA 59.865 43.478 0.00 0.00 0.00 4.20
827 838 3.396260 TGTAAACTGAAACGGAGGGAG 57.604 47.619 0.00 0.00 0.00 4.30
828 839 2.701951 TGTAAACTGAAACGGAGGGAGT 59.298 45.455 0.00 0.00 0.00 3.85
829 840 3.896888 TGTAAACTGAAACGGAGGGAGTA 59.103 43.478 0.00 0.00 0.00 2.59
830 841 3.679824 AAACTGAAACGGAGGGAGTAG 57.320 47.619 0.00 0.00 0.00 2.57
831 842 1.558233 ACTGAAACGGAGGGAGTAGG 58.442 55.000 0.00 0.00 0.00 3.18
832 843 0.175989 CTGAAACGGAGGGAGTAGGC 59.824 60.000 0.00 0.00 0.00 3.93
833 844 1.262640 TGAAACGGAGGGAGTAGGCC 61.263 60.000 0.00 0.00 0.00 5.19
835 846 2.793317 AAACGGAGGGAGTAGGCCGA 62.793 60.000 7.16 0.00 46.29 5.54
836 847 2.907917 CGGAGGGAGTAGGCCGAG 60.908 72.222 0.00 0.00 46.29 4.63
837 848 2.279408 GGAGGGAGTAGGCCGAGT 59.721 66.667 0.00 0.00 0.00 4.18
838 849 2.128507 GGAGGGAGTAGGCCGAGTG 61.129 68.421 0.00 0.00 0.00 3.51
839 850 2.760385 AGGGAGTAGGCCGAGTGC 60.760 66.667 3.46 3.46 40.16 4.40
840 851 3.075005 GGGAGTAGGCCGAGTGCA 61.075 66.667 13.97 0.00 43.89 4.57
865 876 1.670811 CTGCCGGGCAAAGTTATACTG 59.329 52.381 23.94 3.02 38.41 2.74
891 902 1.540267 TATGTTGGGTTGGGCTTTCG 58.460 50.000 0.00 0.00 0.00 3.46
904 922 2.344025 GGCTTTCGAATAACTCCACGT 58.656 47.619 0.00 0.00 0.00 4.49
912 930 5.097529 TCGAATAACTCCACGTATTGTCAC 58.902 41.667 0.00 0.00 0.00 3.67
919 937 4.825085 ACTCCACGTATTGTCACCAAAAAT 59.175 37.500 0.00 0.00 33.44 1.82
1272 1292 1.302192 GTGGTGCACCGCCTTCTTA 60.302 57.895 34.71 11.25 40.56 2.10
1288 1308 0.673644 CTTAGACCACTGCAACGGGG 60.674 60.000 6.06 0.00 0.00 5.73
1294 1314 2.847234 ACTGCAACGGGGTCCTCA 60.847 61.111 0.00 0.00 0.00 3.86
1964 2406 1.272092 GCAGCATCCCATAGCCCATAA 60.272 52.381 0.00 0.00 0.00 1.90
1994 2444 5.972107 AGACACTGATAATTTGCTTGCTT 57.028 34.783 0.00 0.00 0.00 3.91
1997 2447 6.152323 AGACACTGATAATTTGCTTGCTTCAT 59.848 34.615 0.00 0.00 0.00 2.57
1998 2448 6.327934 ACACTGATAATTTGCTTGCTTCATC 58.672 36.000 0.00 0.00 0.00 2.92
1999 2449 6.071784 ACACTGATAATTTGCTTGCTTCATCA 60.072 34.615 0.00 0.00 0.00 3.07
2000 2450 6.978659 CACTGATAATTTGCTTGCTTCATCAT 59.021 34.615 0.00 0.00 0.00 2.45
2001 2451 7.167635 CACTGATAATTTGCTTGCTTCATCATC 59.832 37.037 0.00 0.00 0.00 2.92
2002 2452 7.102847 TGATAATTTGCTTGCTTCATCATCA 57.897 32.000 0.00 0.00 0.00 3.07
2003 2453 7.722363 TGATAATTTGCTTGCTTCATCATCAT 58.278 30.769 0.00 0.00 0.00 2.45
2004 2454 8.201464 TGATAATTTGCTTGCTTCATCATCATT 58.799 29.630 0.00 0.00 0.00 2.57
2038 2491 4.680237 TTGTCGCTGCTGACGGGG 62.680 66.667 15.84 0.00 41.87 5.73
2383 6539 0.106708 ACGATGATGGCGCCTATGTT 59.893 50.000 29.70 8.68 0.00 2.71
2697 6884 6.971184 GCCAATGAAACAATATGAGAGAGTTG 59.029 38.462 0.00 0.00 0.00 3.16
2700 10041 8.509690 CAATGAAACAATATGAGAGAGTTGTGT 58.490 33.333 0.00 0.00 35.20 3.72
2701 10042 9.725019 AATGAAACAATATGAGAGAGTTGTGTA 57.275 29.630 0.00 0.00 35.20 2.90
2702 10043 8.534333 TGAAACAATATGAGAGAGTTGTGTAC 57.466 34.615 0.00 0.00 35.20 2.90
2703 10044 8.367911 TGAAACAATATGAGAGAGTTGTGTACT 58.632 33.333 0.00 0.00 40.71 2.73
2713 10054 4.379339 GAGTTGTGTACTCCCTCTGATC 57.621 50.000 0.00 0.00 46.30 2.92
2714 10055 3.100671 AGTTGTGTACTCCCTCTGATCC 58.899 50.000 0.00 0.00 28.23 3.36
2715 10056 2.832129 GTTGTGTACTCCCTCTGATCCA 59.168 50.000 0.00 0.00 0.00 3.41
2716 10057 3.184382 TGTGTACTCCCTCTGATCCAA 57.816 47.619 0.00 0.00 0.00 3.53
2717 10058 3.516586 TGTGTACTCCCTCTGATCCAAA 58.483 45.455 0.00 0.00 0.00 3.28
2718 10059 3.907474 TGTGTACTCCCTCTGATCCAAAA 59.093 43.478 0.00 0.00 0.00 2.44
2719 10060 4.349636 TGTGTACTCCCTCTGATCCAAAAA 59.650 41.667 0.00 0.00 0.00 1.94
2872 10334 9.123902 TGATTTTACATATACATGAGCTTGCTT 57.876 29.630 0.00 0.00 35.96 3.91
2947 11747 2.028658 TGAGGTTGCTAGAACTGCAGAG 60.029 50.000 23.35 8.39 41.71 3.35
2994 11794 0.409876 TCTGCAGGGTACAGACCTCT 59.590 55.000 15.13 0.00 46.09 3.69
3008 11808 0.902516 ACCTCTCCACTCCTCTGTGC 60.903 60.000 0.00 0.00 36.68 4.57
3040 11882 5.833131 AGAGGCCTTAAGTTCAAATTGTCAA 59.167 36.000 6.77 0.00 0.00 3.18
3044 11886 5.572896 GCCTTAAGTTCAAATTGTCAATCCG 59.427 40.000 0.97 0.00 0.00 4.18
3135 11999 4.161565 ACTTCAAATGACTGGCCGTAGATA 59.838 41.667 0.00 0.00 0.00 1.98
3179 12043 1.338020 GTTCACAAGAAAGTGGCCTGG 59.662 52.381 3.32 0.00 39.93 4.45
3214 12087 1.903404 CCACAACCAGGAACAGGGC 60.903 63.158 0.00 0.00 40.36 5.19
3215 12088 1.152777 CACAACCAGGAACAGGGCA 60.153 57.895 0.00 0.00 40.36 5.36
3382 13078 4.330944 TGAGAACAAACGTGACACCTAT 57.669 40.909 0.00 0.00 0.00 2.57
3402 13098 2.752358 CTGAGCCTGGACCAGCAA 59.248 61.111 16.72 4.03 0.00 3.91
3412 13108 1.614903 TGGACCAGCAAGAAAAGCATG 59.385 47.619 0.00 0.00 0.00 4.06
3425 13121 1.097547 AAGCATGCTACATGGCCGTC 61.098 55.000 23.00 0.00 0.00 4.79
3446 13142 2.957491 TGGCACTGGAAAACACAAAG 57.043 45.000 0.00 0.00 0.00 2.77
3456 13152 6.770785 ACTGGAAAACACAAAGACAAGCTATA 59.229 34.615 0.00 0.00 0.00 1.31
3463 13159 6.789262 ACACAAAGACAAGCTATAATCATGC 58.211 36.000 0.00 0.00 0.00 4.06
3483 13179 6.437162 TCATGCAAGGGCTATCTAAAACTTTT 59.563 34.615 0.00 0.00 41.91 2.27
3484 13180 7.613801 TCATGCAAGGGCTATCTAAAACTTTTA 59.386 33.333 0.00 0.00 41.91 1.52
3486 13182 8.361169 TGCAAGGGCTATCTAAAACTTTTATT 57.639 30.769 0.00 0.00 41.91 1.40
3520 13217 6.869913 ACGTCTTCTTTAATTGTCGGTCATTA 59.130 34.615 0.00 0.00 0.00 1.90
3527 13224 9.667107 TCTTTAATTGTCGGTCATTAAAGAGAT 57.333 29.630 20.74 0.00 44.17 2.75
3565 13262 9.853555 TCAGCTTAAATATACACCAAAACATTG 57.146 29.630 0.00 0.00 0.00 2.82
3575 13272 3.428198 CACCAAAACATTGTTACATGGCG 59.572 43.478 20.36 12.49 0.00 5.69
3579 13276 5.344665 CCAAAACATTGTTACATGGCGTTAG 59.655 40.000 1.76 0.00 0.00 2.34
3593 13290 3.070429 GCGTTAGCATTTTGGATGGAG 57.930 47.619 0.00 0.00 44.35 3.86
3649 13347 4.297207 AGGATTACCCTCGGCCTC 57.703 61.111 0.00 0.00 43.31 4.70
3650 13348 1.627019 AGGATTACCCTCGGCCTCT 59.373 57.895 0.00 0.00 43.31 3.69
3651 13349 0.760945 AGGATTACCCTCGGCCTCTG 60.761 60.000 0.00 0.00 43.31 3.35
3652 13350 1.069935 GATTACCCTCGGCCTCTGC 59.930 63.158 0.00 0.00 0.00 4.26
3653 13351 1.686325 GATTACCCTCGGCCTCTGCA 61.686 60.000 0.00 0.00 40.13 4.41
3654 13352 1.056700 ATTACCCTCGGCCTCTGCAT 61.057 55.000 0.00 0.00 40.13 3.96
3655 13353 1.686325 TTACCCTCGGCCTCTGCATC 61.686 60.000 0.00 0.00 40.13 3.91
3656 13354 2.871795 TACCCTCGGCCTCTGCATCA 62.872 60.000 0.00 0.00 40.13 3.07
3657 13355 2.108566 CCTCGGCCTCTGCATCAG 59.891 66.667 0.00 0.00 40.13 2.90
3658 13356 2.429767 CCTCGGCCTCTGCATCAGA 61.430 63.158 0.00 0.00 38.25 3.27
3659 13357 1.519246 CTCGGCCTCTGCATCAGAA 59.481 57.895 0.00 0.00 40.18 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 137 5.355467 AAAATAAAAATTGCCCGCACAAG 57.645 34.783 0.00 0.00 31.96 3.16
278 282 4.236935 CAAAACGTGCCAGCATTTCTTAT 58.763 39.130 0.00 0.00 0.00 1.73
577 588 1.028905 TGGTTTTGAGAAGGTTGCGG 58.971 50.000 0.00 0.00 0.00 5.69
589 600 2.226330 TCGACCTTCCATGTGGTTTTG 58.774 47.619 0.00 0.00 36.59 2.44
614 625 4.931027 AACTGTGAGAGAGGGAGTACTA 57.069 45.455 0.00 0.00 0.00 1.82
619 630 3.194542 CCTGTAAACTGTGAGAGAGGGAG 59.805 52.174 0.00 0.00 0.00 4.30
620 631 3.165875 CCTGTAAACTGTGAGAGAGGGA 58.834 50.000 0.00 0.00 0.00 4.20
623 634 2.672478 CGCCCTGTAAACTGTGAGAGAG 60.672 54.545 0.00 0.00 0.00 3.20
624 635 1.272490 CGCCCTGTAAACTGTGAGAGA 59.728 52.381 0.00 0.00 0.00 3.10
625 636 1.000955 ACGCCCTGTAAACTGTGAGAG 59.999 52.381 0.00 0.00 0.00 3.20
627 638 1.148310 CACGCCCTGTAAACTGTGAG 58.852 55.000 0.00 0.00 0.00 3.51
629 640 1.574428 GCACGCCCTGTAAACTGTG 59.426 57.895 0.00 0.00 0.00 3.66
630 641 1.959226 CGCACGCCCTGTAAACTGT 60.959 57.895 0.00 0.00 0.00 3.55
632 643 3.047877 GCGCACGCCCTGTAAACT 61.048 61.111 0.30 0.00 34.56 2.66
633 644 4.439472 CGCGCACGCCCTGTAAAC 62.439 66.667 8.75 0.00 37.98 2.01
636 647 4.781959 GTACGCGCACGCCCTGTA 62.782 66.667 5.73 3.39 45.53 2.74
641 652 4.183686 TAGGAGTACGCGCACGCC 62.184 66.667 22.99 22.99 45.53 5.68
644 655 1.063811 GACCTAGGAGTACGCGCAC 59.936 63.158 17.98 2.54 0.00 5.34
645 656 2.466982 CGACCTAGGAGTACGCGCA 61.467 63.158 17.98 0.00 0.00 6.09
646 657 2.327244 CGACCTAGGAGTACGCGC 59.673 66.667 17.98 0.00 0.00 6.86
647 658 1.086067 TGACGACCTAGGAGTACGCG 61.086 60.000 17.98 3.53 0.00 6.01
648 659 1.089920 TTGACGACCTAGGAGTACGC 58.910 55.000 17.98 11.35 0.00 4.42
649 660 4.103357 CAAATTGACGACCTAGGAGTACG 58.897 47.826 17.98 16.64 0.00 3.67
650 661 5.320549 TCAAATTGACGACCTAGGAGTAC 57.679 43.478 17.98 9.52 0.00 2.73
651 662 7.649533 TTATCAAATTGACGACCTAGGAGTA 57.350 36.000 17.98 1.50 0.00 2.59
653 664 8.141909 TGTATTATCAAATTGACGACCTAGGAG 58.858 37.037 17.98 11.62 0.00 3.69
654 665 8.014070 TGTATTATCAAATTGACGACCTAGGA 57.986 34.615 17.98 0.00 0.00 2.94
655 666 8.657074 TTGTATTATCAAATTGACGACCTAGG 57.343 34.615 7.41 7.41 0.00 3.02
658 669 9.173021 TGATTTGTATTATCAAATTGACGACCT 57.827 29.630 0.00 0.00 44.62 3.85
659 670 9.950680 ATGATTTGTATTATCAAATTGACGACC 57.049 29.630 0.00 0.00 44.62 4.79
710 721 9.450807 CGTTTGAAAATAGAACATCTGAAGTTT 57.549 29.630 0.00 0.00 0.00 2.66
711 722 8.076178 CCGTTTGAAAATAGAACATCTGAAGTT 58.924 33.333 0.00 0.00 0.00 2.66
712 723 7.228706 ACCGTTTGAAAATAGAACATCTGAAGT 59.771 33.333 0.00 0.00 0.00 3.01
713 724 7.584987 ACCGTTTGAAAATAGAACATCTGAAG 58.415 34.615 0.00 0.00 0.00 3.02
714 725 7.504924 ACCGTTTGAAAATAGAACATCTGAA 57.495 32.000 0.00 0.00 0.00 3.02
715 726 8.786826 ATACCGTTTGAAAATAGAACATCTGA 57.213 30.769 0.00 0.00 0.00 3.27
726 737 9.465985 AACACGAAATTTATACCGTTTGAAAAT 57.534 25.926 0.36 0.00 32.50 1.82
727 738 8.853469 AACACGAAATTTATACCGTTTGAAAA 57.147 26.923 0.36 0.00 32.50 2.29
771 782 6.976934 ATACCTAGGTTGCCAATTTTATGG 57.023 37.500 22.11 0.00 43.70 2.74
772 783 7.581476 CGTATACCTAGGTTGCCAATTTTATG 58.419 38.462 22.11 0.00 0.00 1.90
773 784 6.206048 GCGTATACCTAGGTTGCCAATTTTAT 59.794 38.462 22.11 5.71 0.00 1.40
774 785 5.528320 GCGTATACCTAGGTTGCCAATTTTA 59.472 40.000 22.11 0.00 0.00 1.52
775 786 4.337274 GCGTATACCTAGGTTGCCAATTTT 59.663 41.667 22.11 0.00 0.00 1.82
776 787 3.881089 GCGTATACCTAGGTTGCCAATTT 59.119 43.478 22.11 0.00 0.00 1.82
777 788 3.473625 GCGTATACCTAGGTTGCCAATT 58.526 45.455 22.11 0.00 0.00 2.32
778 789 2.547218 CGCGTATACCTAGGTTGCCAAT 60.547 50.000 22.11 9.64 0.00 3.16
779 790 1.202440 CGCGTATACCTAGGTTGCCAA 60.202 52.381 22.11 0.75 0.00 4.52
780 791 0.386476 CGCGTATACCTAGGTTGCCA 59.614 55.000 22.11 1.21 0.00 4.92
781 792 0.386838 ACGCGTATACCTAGGTTGCC 59.613 55.000 22.11 7.02 0.00 4.52
782 793 2.351157 CCTACGCGTATACCTAGGTTGC 60.351 54.545 22.11 17.41 0.00 4.17
783 794 3.058639 GTCCTACGCGTATACCTAGGTTG 60.059 52.174 22.11 9.15 0.00 3.77
784 795 3.142174 GTCCTACGCGTATACCTAGGTT 58.858 50.000 22.11 10.62 0.00 3.50
785 796 2.370189 AGTCCTACGCGTATACCTAGGT 59.630 50.000 20.91 20.57 0.00 3.08
786 797 3.051081 AGTCCTACGCGTATACCTAGG 57.949 52.381 20.91 18.03 0.00 3.02
787 798 3.812053 ACAAGTCCTACGCGTATACCTAG 59.188 47.826 20.91 8.56 0.00 3.02
788 799 3.808728 ACAAGTCCTACGCGTATACCTA 58.191 45.455 20.91 0.00 0.00 3.08
789 800 2.648059 ACAAGTCCTACGCGTATACCT 58.352 47.619 20.91 12.19 0.00 3.08
790 801 4.552166 TTACAAGTCCTACGCGTATACC 57.448 45.455 20.91 10.04 0.00 2.73
791 802 5.453587 CAGTTTACAAGTCCTACGCGTATAC 59.546 44.000 20.91 19.74 0.00 1.47
792 803 5.353956 TCAGTTTACAAGTCCTACGCGTATA 59.646 40.000 20.91 8.44 0.00 1.47
793 804 4.156556 TCAGTTTACAAGTCCTACGCGTAT 59.843 41.667 20.91 5.41 0.00 3.06
794 805 3.501828 TCAGTTTACAAGTCCTACGCGTA 59.498 43.478 19.40 19.40 0.00 4.42
795 806 2.294233 TCAGTTTACAAGTCCTACGCGT 59.706 45.455 19.17 19.17 0.00 6.01
796 807 2.937591 TCAGTTTACAAGTCCTACGCG 58.062 47.619 3.53 3.53 0.00 6.01
797 808 4.375706 CGTTTCAGTTTACAAGTCCTACGC 60.376 45.833 0.00 0.00 0.00 4.42
798 809 4.149396 CCGTTTCAGTTTACAAGTCCTACG 59.851 45.833 0.00 0.00 0.00 3.51
799 810 5.291971 TCCGTTTCAGTTTACAAGTCCTAC 58.708 41.667 0.00 0.00 0.00 3.18
800 811 5.510179 CCTCCGTTTCAGTTTACAAGTCCTA 60.510 44.000 0.00 0.00 0.00 2.94
801 812 4.377897 CTCCGTTTCAGTTTACAAGTCCT 58.622 43.478 0.00 0.00 0.00 3.85
802 813 3.497262 CCTCCGTTTCAGTTTACAAGTCC 59.503 47.826 0.00 0.00 0.00 3.85
803 814 3.497262 CCCTCCGTTTCAGTTTACAAGTC 59.503 47.826 0.00 0.00 0.00 3.01
804 815 3.135167 TCCCTCCGTTTCAGTTTACAAGT 59.865 43.478 0.00 0.00 0.00 3.16
805 816 3.735591 TCCCTCCGTTTCAGTTTACAAG 58.264 45.455 0.00 0.00 0.00 3.16
806 817 3.135167 ACTCCCTCCGTTTCAGTTTACAA 59.865 43.478 0.00 0.00 0.00 2.41
807 818 2.701951 ACTCCCTCCGTTTCAGTTTACA 59.298 45.455 0.00 0.00 0.00 2.41
808 819 3.397849 ACTCCCTCCGTTTCAGTTTAC 57.602 47.619 0.00 0.00 0.00 2.01
809 820 3.512724 CCTACTCCCTCCGTTTCAGTTTA 59.487 47.826 0.00 0.00 0.00 2.01
810 821 2.302157 CCTACTCCCTCCGTTTCAGTTT 59.698 50.000 0.00 0.00 0.00 2.66
811 822 1.900486 CCTACTCCCTCCGTTTCAGTT 59.100 52.381 0.00 0.00 0.00 3.16
812 823 1.558233 CCTACTCCCTCCGTTTCAGT 58.442 55.000 0.00 0.00 0.00 3.41
813 824 0.175989 GCCTACTCCCTCCGTTTCAG 59.824 60.000 0.00 0.00 0.00 3.02
814 825 1.262640 GGCCTACTCCCTCCGTTTCA 61.263 60.000 0.00 0.00 0.00 2.69
815 826 1.521141 GGCCTACTCCCTCCGTTTC 59.479 63.158 0.00 0.00 0.00 2.78
816 827 2.356780 CGGCCTACTCCCTCCGTTT 61.357 63.158 0.00 0.00 37.33 3.60
817 828 2.758737 CGGCCTACTCCCTCCGTT 60.759 66.667 0.00 0.00 37.33 4.44
818 829 3.717924 CTCGGCCTACTCCCTCCGT 62.718 68.421 0.00 0.00 42.28 4.69
819 830 2.907917 CTCGGCCTACTCCCTCCG 60.908 72.222 0.00 0.00 42.96 4.63
820 831 2.128507 CACTCGGCCTACTCCCTCC 61.129 68.421 0.00 0.00 0.00 4.30
821 832 2.787567 GCACTCGGCCTACTCCCTC 61.788 68.421 0.00 0.00 36.11 4.30
822 833 2.760385 GCACTCGGCCTACTCCCT 60.760 66.667 0.00 0.00 36.11 4.20
823 834 1.972660 AATGCACTCGGCCTACTCCC 61.973 60.000 0.00 0.00 43.89 4.30
824 835 0.107654 AAATGCACTCGGCCTACTCC 60.108 55.000 0.00 0.00 43.89 3.85
825 836 2.159085 AGTAAATGCACTCGGCCTACTC 60.159 50.000 0.00 0.00 43.89 2.59
826 837 1.831736 AGTAAATGCACTCGGCCTACT 59.168 47.619 0.00 0.00 43.89 2.57
827 838 1.933853 CAGTAAATGCACTCGGCCTAC 59.066 52.381 0.00 0.00 43.89 3.18
828 839 2.309528 CAGTAAATGCACTCGGCCTA 57.690 50.000 0.00 0.00 43.89 3.93
829 840 3.159298 CAGTAAATGCACTCGGCCT 57.841 52.632 0.00 0.00 43.89 5.19
839 850 0.887933 ACTTTGCCCGGCAGTAAATG 59.112 50.000 12.95 2.80 40.61 2.32
840 851 1.627864 AACTTTGCCCGGCAGTAAAT 58.372 45.000 12.95 0.00 40.61 1.40
865 876 4.788679 AGCCCAACCCAACATATAAGTAC 58.211 43.478 0.00 0.00 0.00 2.73
891 902 5.172934 TGGTGACAATACGTGGAGTTATTC 58.827 41.667 0.00 0.00 37.44 1.75
929 947 2.965147 GCGATGCGTGGAGTTGCAA 61.965 57.895 0.00 0.00 45.45 4.08
931 949 2.637715 GATGCGATGCGTGGAGTTGC 62.638 60.000 0.00 0.00 0.00 4.17
1272 1292 3.168528 ACCCCGTTGCAGTGGTCT 61.169 61.111 5.67 0.00 0.00 3.85
1294 1314 4.827087 CTCGCTGGCCTCGCACAT 62.827 66.667 16.09 0.00 0.00 3.21
1964 2406 5.745227 CAAATTATCAGTGTCTAGGTGGGT 58.255 41.667 0.00 0.00 0.00 4.51
1994 2444 4.496840 GCAGCGTTGATGAAATGATGATGA 60.497 41.667 2.38 0.00 42.63 2.92
1997 2447 2.748532 TGCAGCGTTGATGAAATGATGA 59.251 40.909 2.38 0.00 42.63 2.92
1998 2448 3.105937 CTGCAGCGTTGATGAAATGATG 58.894 45.455 2.38 0.00 42.84 3.07
1999 2449 2.098607 CCTGCAGCGTTGATGAAATGAT 59.901 45.455 8.66 0.00 0.00 2.45
2000 2450 1.469703 CCTGCAGCGTTGATGAAATGA 59.530 47.619 8.66 0.00 0.00 2.57
2001 2451 1.200716 ACCTGCAGCGTTGATGAAATG 59.799 47.619 8.66 0.00 0.00 2.32
2002 2452 1.538047 ACCTGCAGCGTTGATGAAAT 58.462 45.000 8.66 0.00 0.00 2.17
2003 2453 1.001487 CAACCTGCAGCGTTGATGAAA 60.001 47.619 29.31 0.00 42.63 2.69
2004 2454 0.592637 CAACCTGCAGCGTTGATGAA 59.407 50.000 29.31 0.00 42.63 2.57
2038 2491 4.157840 GGGGTTTTGATCACCACATACTTC 59.842 45.833 0.00 0.00 37.69 3.01
2203 2664 0.254178 GATGTGCCATCTCCCACACT 59.746 55.000 7.65 0.00 43.89 3.55
2265 2726 2.550180 GACTTCTCAGTGTTTTGGAGGC 59.450 50.000 0.00 0.00 31.22 4.70
2312 6466 0.175531 TGCTCCGCAGATGATTTCGA 59.824 50.000 0.00 0.00 33.32 3.71
2383 6539 1.362224 CACCCCCTTCTTCTTCCTCA 58.638 55.000 0.00 0.00 0.00 3.86
2697 6884 4.553330 TTTTGGATCAGAGGGAGTACAC 57.447 45.455 0.00 0.00 0.00 2.90
2717 10058 7.381766 ACTAACTAAAACCACGACACTTTTT 57.618 32.000 0.00 0.00 0.00 1.94
2718 10059 6.990341 ACTAACTAAAACCACGACACTTTT 57.010 33.333 0.00 0.00 0.00 2.27
2719 10060 7.267857 ACTACTAACTAAAACCACGACACTTT 58.732 34.615 0.00 0.00 0.00 2.66
2720 10061 6.809869 ACTACTAACTAAAACCACGACACTT 58.190 36.000 0.00 0.00 0.00 3.16
2721 10062 6.396829 ACTACTAACTAAAACCACGACACT 57.603 37.500 0.00 0.00 0.00 3.55
2722 10063 9.495754 CTATACTACTAACTAAAACCACGACAC 57.504 37.037 0.00 0.00 0.00 3.67
2723 10064 9.448438 TCTATACTACTAACTAAAACCACGACA 57.552 33.333 0.00 0.00 0.00 4.35
2726 10067 9.727627 CCTTCTATACTACTAACTAAAACCACG 57.272 37.037 0.00 0.00 0.00 4.94
2947 11747 7.276438 GCCTTTCTTTTGGTTTCATACATGATC 59.724 37.037 0.00 0.00 36.56 2.92
2994 11794 0.394192 CACAAGCACAGAGGAGTGGA 59.606 55.000 0.00 0.00 39.87 4.02
3008 11808 3.409026 ACTTAAGGCCTCTGTCACAAG 57.591 47.619 5.23 3.91 0.00 3.16
3040 11882 0.689745 TTCGGGATTCACCTCCGGAT 60.690 55.000 3.57 0.00 42.27 4.18
3044 11886 0.748367 GCCTTTCGGGATTCACCTCC 60.748 60.000 0.00 0.00 38.98 4.30
3053 11895 0.953471 CAACATGACGCCTTTCGGGA 60.953 55.000 0.00 0.00 43.86 5.14
3135 11999 0.038892 CTGCCGATTGCTTGCACTTT 60.039 50.000 0.00 0.00 42.00 2.66
3154 12018 3.057526 GGCCACTTTCTTGTGAACCATAC 60.058 47.826 0.00 0.00 40.12 2.39
3179 12043 0.971959 TGGCTTCATGGGATGTTGGC 60.972 55.000 0.00 0.00 0.00 4.52
3214 12087 2.842208 TTTGCTCCTTCAAACGTGTG 57.158 45.000 0.00 0.00 31.64 3.82
3215 12088 3.859411 TTTTTGCTCCTTCAAACGTGT 57.141 38.095 0.00 0.00 35.86 4.49
3382 13078 2.752358 CTGGTCCAGGCTCAGCAA 59.248 61.111 11.46 0.00 0.00 3.91
3402 13098 1.753073 GGCCATGTAGCATGCTTTTCT 59.247 47.619 28.02 3.06 0.00 2.52
3412 13108 3.813596 CCAAGACGGCCATGTAGC 58.186 61.111 2.24 0.00 0.00 3.58
3425 13121 2.957491 TTGTGTTTTCCAGTGCCAAG 57.043 45.000 0.00 0.00 0.00 3.61
3446 13142 4.320788 GCCCTTGCATGATTATAGCTTGTC 60.321 45.833 0.00 0.00 37.47 3.18
3456 13152 6.131961 AGTTTTAGATAGCCCTTGCATGATT 58.868 36.000 0.00 0.00 41.13 2.57
3489 13185 7.385752 ACCGACAATTAAAGAAGACGTTTGATA 59.614 33.333 0.00 0.00 0.00 2.15
3492 13188 5.744490 ACCGACAATTAAAGAAGACGTTTG 58.256 37.500 0.00 0.00 0.00 2.93
3504 13201 9.098355 CTGATCTCTTTAATGACCGACAATTAA 57.902 33.333 0.00 0.00 0.00 1.40
3520 13217 4.699257 GCTGACATTTGGACTGATCTCTTT 59.301 41.667 0.00 0.00 0.00 2.52
3527 13224 9.109393 GTATATTTAAGCTGACATTTGGACTGA 57.891 33.333 0.00 0.00 0.00 3.41
3565 13262 3.857093 CCAAAATGCTAACGCCATGTAAC 59.143 43.478 0.00 0.00 34.43 2.50
3567 13264 3.348119 TCCAAAATGCTAACGCCATGTA 58.652 40.909 0.00 0.00 34.43 2.29
3575 13272 4.096984 CCAGACTCCATCCAAAATGCTAAC 59.903 45.833 0.00 0.00 0.00 2.34
3579 13276 2.686915 CTCCAGACTCCATCCAAAATGC 59.313 50.000 0.00 0.00 0.00 3.56
3584 13281 2.030027 ACACTCCAGACTCCATCCAA 57.970 50.000 0.00 0.00 0.00 3.53
3633 13331 1.749033 CAGAGGCCGAGGGTAATCC 59.251 63.158 0.00 0.00 0.00 3.01
3634 13332 1.069935 GCAGAGGCCGAGGGTAATC 59.930 63.158 0.00 0.00 0.00 1.75
3635 13333 1.056700 ATGCAGAGGCCGAGGGTAAT 61.057 55.000 0.00 0.00 40.13 1.89
3636 13334 1.686325 GATGCAGAGGCCGAGGGTAA 61.686 60.000 0.00 0.00 40.13 2.85
3637 13335 2.041922 ATGCAGAGGCCGAGGGTA 60.042 61.111 0.00 0.00 40.13 3.69
3638 13336 3.474570 GATGCAGAGGCCGAGGGT 61.475 66.667 0.00 0.00 40.13 4.34
3639 13337 3.457625 CTGATGCAGAGGCCGAGGG 62.458 68.421 0.00 0.00 40.13 4.30
3640 13338 1.964608 TTCTGATGCAGAGGCCGAGG 61.965 60.000 0.00 0.00 41.75 4.63
3641 13339 1.519246 TTCTGATGCAGAGGCCGAG 59.481 57.895 0.00 0.00 41.75 4.63
3642 13340 3.712287 TTCTGATGCAGAGGCCGA 58.288 55.556 0.00 0.00 41.75 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.