Multiple sequence alignment - TraesCS4D01G262500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G262500 chr4D 100.000 4513 0 0 1 4513 433394868 433390356 0.000000e+00 8335.0
1 TraesCS4D01G262500 chr4D 90.012 821 45 14 2512 3322 374099395 374098602 0.000000e+00 1027.0
2 TraesCS4D01G262500 chr4D 100.000 47 0 0 1896 1942 374099446 374099400 2.240000e-13 87.9
3 TraesCS4D01G262500 chr4B 89.572 4133 197 106 341 4338 531581888 531577855 0.000000e+00 5029.0
4 TraesCS4D01G262500 chr4B 90.909 308 21 6 17 323 531582480 531582179 1.510000e-109 407.0
5 TraesCS4D01G262500 chr4B 94.444 72 4 0 4388 4459 531577856 531577785 1.330000e-20 111.0
6 TraesCS4D01G262500 chr4A 89.909 2973 168 62 1056 3951 34788018 34785101 0.000000e+00 3707.0
7 TraesCS4D01G262500 chr4A 89.721 788 57 9 2957 3740 454846632 454847399 0.000000e+00 985.0
8 TraesCS4D01G262500 chr4A 85.667 607 37 21 169 733 34789153 34788555 1.080000e-165 593.0
9 TraesCS4D01G262500 chr4A 85.253 495 32 16 3988 4452 34785103 34784620 5.280000e-129 472.0
10 TraesCS4D01G262500 chr7D 90.330 1303 75 19 2463 3743 495879794 495878521 0.000000e+00 1661.0
11 TraesCS4D01G262500 chr7D 90.415 386 25 7 1893 2277 495880270 495879896 8.720000e-137 497.0
12 TraesCS4D01G262500 chr1D 89.960 1245 72 22 2512 3733 468993675 468994889 0.000000e+00 1557.0
13 TraesCS4D01G262500 chr1D 88.344 326 19 9 3918 4232 468994930 468995247 1.530000e-99 374.0
14 TraesCS4D01G262500 chr1D 100.000 47 0 0 1896 1942 468993624 468993670 2.240000e-13 87.9
15 TraesCS4D01G262500 chr7B 90.719 1196 68 16 2571 3740 137024028 137025206 0.000000e+00 1554.0
16 TraesCS4D01G262500 chr5B 89.799 1196 73 17 2571 3740 417341114 417342286 0.000000e+00 1487.0
17 TraesCS4D01G262500 chr5B 95.161 62 3 0 1725 1786 538547309 538547370 1.030000e-16 99.0
18 TraesCS4D01G262500 chr5B 96.364 55 1 1 4459 4513 282270132 282270079 6.220000e-14 89.8
19 TraesCS4D01G262500 chr5B 94.643 56 1 2 4458 4513 270321407 270321354 8.040000e-13 86.1
20 TraesCS4D01G262500 chr6B 89.047 1196 82 18 2571 3740 668977071 668978243 0.000000e+00 1437.0
21 TraesCS4D01G262500 chr6B 89.781 411 37 4 1216 1622 487835473 487835064 5.170000e-144 521.0
22 TraesCS4D01G262500 chr6B 96.296 54 1 1 4460 4513 401431866 401431814 2.240000e-13 87.9
23 TraesCS4D01G262500 chr6B 94.643 56 2 1 4459 4513 510245643 510245588 8.040000e-13 86.1
24 TraesCS4D01G262500 chr7A 88.316 1241 84 26 2512 3733 239764527 239763329 0.000000e+00 1432.0
25 TraesCS4D01G262500 chr7A 89.145 737 57 8 3011 3743 64805851 64805134 0.000000e+00 896.0
26 TraesCS4D01G262500 chr7A 88.070 285 18 7 3931 4207 239763245 239762969 1.570000e-84 324.0
27 TraesCS4D01G262500 chr7A 96.226 53 1 1 4461 4513 529274223 529274274 8.040000e-13 86.1
28 TraesCS4D01G262500 chr7A 96.154 52 2 0 4459 4510 664599109 664599160 8.040000e-13 86.1
29 TraesCS4D01G262500 chr7A 93.103 58 3 1 4456 4513 639743738 639743794 2.890000e-12 84.2
30 TraesCS4D01G262500 chr6A 89.588 922 59 11 2830 3733 581455933 581455031 0.000000e+00 1136.0
31 TraesCS4D01G262500 chr6A 89.926 407 36 4 1216 1618 471800552 471800957 1.860000e-143 520.0
32 TraesCS4D01G262500 chr6A 88.344 326 19 9 3918 4232 581454990 581454673 1.530000e-99 374.0
33 TraesCS4D01G262500 chr6A 87.842 329 26 9 2512 2834 581456977 581456657 1.530000e-99 374.0
34 TraesCS4D01G262500 chr6A 96.078 51 1 1 1893 1942 581457032 581456982 1.040000e-11 82.4
35 TraesCS4D01G262500 chr2A 88.622 791 67 12 2957 3743 219084836 219084065 0.000000e+00 941.0
36 TraesCS4D01G262500 chr5A 89.034 766 62 8 2980 3740 381609792 381610540 0.000000e+00 929.0
37 TraesCS4D01G262500 chr5A 87.944 788 72 8 2957 3740 487539288 487540056 0.000000e+00 907.0
38 TraesCS4D01G262500 chr5A 96.774 62 2 0 1725 1786 558548329 558548390 2.220000e-18 104.0
39 TraesCS4D01G262500 chr2B 85.235 596 63 19 1871 2453 159848427 159849010 1.400000e-164 590.0
40 TraesCS4D01G262500 chr2B 89.901 406 38 3 1216 1618 605381365 605380960 1.860000e-143 520.0
41 TraesCS4D01G262500 chr2B 82.847 583 55 33 2106 2678 30248671 30249218 8.780000e-132 481.0
42 TraesCS4D01G262500 chr2B 90.361 249 23 1 1871 2119 30243141 30243388 4.350000e-85 326.0
43 TraesCS4D01G262500 chr6D 89.499 419 38 5 1216 1630 332499021 332499437 4.000000e-145 525.0
44 TraesCS4D01G262500 chr3D 90.226 399 39 0 1216 1614 151901742 151902140 5.170000e-144 521.0
45 TraesCS4D01G262500 chr3A 90.050 402 40 0 1216 1617 178987289 178986888 5.170000e-144 521.0
46 TraesCS4D01G262500 chr3A 94.915 59 1 2 4455 4513 31839048 31838992 1.730000e-14 91.6
47 TraesCS4D01G262500 chr3B 89.372 414 40 4 1203 1614 222318444 222318855 6.690000e-143 518.0
48 TraesCS4D01G262500 chr5D 96.774 62 2 0 1725 1786 442337557 442337618 2.220000e-18 104.0
49 TraesCS4D01G262500 chr1B 96.429 56 1 1 4458 4513 639015675 639015621 1.730000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G262500 chr4D 433390356 433394868 4512 True 8335.000000 8335 100.000000 1 4513 1 chr4D.!!$R1 4512
1 TraesCS4D01G262500 chr4D 374098602 374099446 844 True 557.450000 1027 95.006000 1896 3322 2 chr4D.!!$R2 1426
2 TraesCS4D01G262500 chr4B 531577785 531582480 4695 True 1849.000000 5029 91.641667 17 4459 3 chr4B.!!$R1 4442
3 TraesCS4D01G262500 chr4A 34784620 34789153 4533 True 1590.666667 3707 86.943000 169 4452 3 chr4A.!!$R1 4283
4 TraesCS4D01G262500 chr4A 454846632 454847399 767 False 985.000000 985 89.721000 2957 3740 1 chr4A.!!$F1 783
5 TraesCS4D01G262500 chr7D 495878521 495880270 1749 True 1079.000000 1661 90.372500 1893 3743 2 chr7D.!!$R1 1850
6 TraesCS4D01G262500 chr1D 468993624 468995247 1623 False 672.966667 1557 92.768000 1896 4232 3 chr1D.!!$F1 2336
7 TraesCS4D01G262500 chr7B 137024028 137025206 1178 False 1554.000000 1554 90.719000 2571 3740 1 chr7B.!!$F1 1169
8 TraesCS4D01G262500 chr5B 417341114 417342286 1172 False 1487.000000 1487 89.799000 2571 3740 1 chr5B.!!$F1 1169
9 TraesCS4D01G262500 chr6B 668977071 668978243 1172 False 1437.000000 1437 89.047000 2571 3740 1 chr6B.!!$F1 1169
10 TraesCS4D01G262500 chr7A 64805134 64805851 717 True 896.000000 896 89.145000 3011 3743 1 chr7A.!!$R1 732
11 TraesCS4D01G262500 chr7A 239762969 239764527 1558 True 878.000000 1432 88.193000 2512 4207 2 chr7A.!!$R2 1695
12 TraesCS4D01G262500 chr6A 581454673 581457032 2359 True 491.600000 1136 90.463000 1893 4232 4 chr6A.!!$R1 2339
13 TraesCS4D01G262500 chr2A 219084065 219084836 771 True 941.000000 941 88.622000 2957 3743 1 chr2A.!!$R1 786
14 TraesCS4D01G262500 chr5A 381609792 381610540 748 False 929.000000 929 89.034000 2980 3740 1 chr5A.!!$F1 760
15 TraesCS4D01G262500 chr5A 487539288 487540056 768 False 907.000000 907 87.944000 2957 3740 1 chr5A.!!$F2 783
16 TraesCS4D01G262500 chr2B 159848427 159849010 583 False 590.000000 590 85.235000 1871 2453 1 chr2B.!!$F3 582
17 TraesCS4D01G262500 chr2B 30248671 30249218 547 False 481.000000 481 82.847000 2106 2678 1 chr2B.!!$F2 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.168568 GTCGTCTCCTCACTCCGTTC 59.831 60.0 0.00 0.0 0.00 3.95 F
1212 1775 0.037326 ATGATCTTGGTGTCGCACGT 60.037 50.0 0.00 0.0 34.83 4.49 F
2143 2742 0.105224 CCGAGACCGAGAGAGCTCTA 59.895 60.0 18.25 0.0 40.61 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1979 2577 0.399075 AAATTTGACCCGACCCGAGT 59.601 50.0 0.0 0.0 0.00 4.18 R
2179 2779 0.251209 TGTACTCGGTCACTGCTCCT 60.251 55.0 0.0 0.0 0.00 3.69 R
3965 5477 0.036732 TGTGCCAATCTGGTGAGGAC 59.963 55.0 0.0 0.0 40.46 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.168568 GTCGTCTCCTCACTCCGTTC 59.831 60.000 0.00 0.00 0.00 3.95
33 34 0.959372 TCGTCTCCTCACTCCGTTCC 60.959 60.000 0.00 0.00 0.00 3.62
38 39 2.704065 TCTCCTCACTCCGTTCCTTTTT 59.296 45.455 0.00 0.00 0.00 1.94
39 40 3.067833 CTCCTCACTCCGTTCCTTTTTC 58.932 50.000 0.00 0.00 0.00 2.29
49 50 3.128349 CGTTCCTTTTTCTTCCTCGTCA 58.872 45.455 0.00 0.00 0.00 4.35
90 91 2.498167 ACAACTGTGATGTTCTGGAGC 58.502 47.619 0.00 0.00 0.00 4.70
98 99 4.256920 GTGATGTTCTGGAGCATTGTACT 58.743 43.478 1.79 0.00 32.28 2.73
99 100 5.046663 TGTGATGTTCTGGAGCATTGTACTA 60.047 40.000 1.79 0.00 32.28 1.82
100 101 5.521735 GTGATGTTCTGGAGCATTGTACTAG 59.478 44.000 1.79 0.00 32.28 2.57
104 105 5.715279 TGTTCTGGAGCATTGTACTAGTACT 59.285 40.000 28.56 12.19 37.00 2.73
105 106 6.888088 TGTTCTGGAGCATTGTACTAGTACTA 59.112 38.462 28.56 23.25 37.00 1.82
106 107 6.939132 TCTGGAGCATTGTACTAGTACTAC 57.061 41.667 28.56 17.00 37.00 2.73
107 108 6.420638 TCTGGAGCATTGTACTAGTACTACA 58.579 40.000 28.56 16.49 37.00 2.74
108 109 7.061054 TCTGGAGCATTGTACTAGTACTACAT 58.939 38.462 28.56 17.17 37.00 2.29
109 110 8.215736 TCTGGAGCATTGTACTAGTACTACATA 58.784 37.037 28.56 9.80 37.00 2.29
110 111 8.162878 TGGAGCATTGTACTAGTACTACATAC 57.837 38.462 28.56 17.25 37.00 2.39
128 129 6.069684 ACATACTACTACCAATACGACTGC 57.930 41.667 0.00 0.00 0.00 4.40
145 146 5.467735 ACGACTGCGAGTATACATACATACA 59.532 40.000 5.50 0.00 41.64 2.29
171 172 2.683362 GTCACATTTTACCCTGCTAGCC 59.317 50.000 13.29 0.00 0.00 3.93
263 264 0.382515 CGTTTGGAAAACAAGGCGGA 59.617 50.000 3.97 0.00 40.82 5.54
296 297 1.747745 GGGTACGCTTGCCCGAAAT 60.748 57.895 0.00 0.00 38.00 2.17
299 301 0.299597 GTACGCTTGCCCGAAATACG 59.700 55.000 0.00 0.00 42.18 3.06
301 303 2.745785 CGCTTGCCCGAAATACGCA 61.746 57.895 0.00 0.00 41.07 5.24
305 307 3.206957 GCCCGAAATACGCACCCC 61.207 66.667 0.00 0.00 41.07 4.95
321 343 2.125912 CCTCGACACCTCGGCAAG 60.126 66.667 0.00 0.00 40.58 4.01
322 344 2.651361 CTCGACACCTCGGCAAGT 59.349 61.111 0.00 0.00 40.58 3.16
323 345 1.444553 CTCGACACCTCGGCAAGTC 60.445 63.158 0.00 0.00 40.58 3.01
324 346 1.867919 CTCGACACCTCGGCAAGTCT 61.868 60.000 0.00 0.00 40.58 3.24
402 683 3.074390 TGAGAAACCCAACCATCATCAGT 59.926 43.478 0.00 0.00 0.00 3.41
443 738 5.573337 AGAAGGCAATAATCAAAGCAGAC 57.427 39.130 0.00 0.00 0.00 3.51
761 1085 2.038007 TTGCTCGCCTCTCCTCCT 59.962 61.111 0.00 0.00 0.00 3.69
762 1086 2.015227 CTTGCTCGCCTCTCCTCCTC 62.015 65.000 0.00 0.00 0.00 3.71
763 1087 3.223589 GCTCGCCTCTCCTCCTCC 61.224 72.222 0.00 0.00 0.00 4.30
789 1113 0.812412 TTTATACTTGCTCCGGCCGC 60.812 55.000 22.85 6.95 37.74 6.53
805 1129 0.177604 CCGCCTTCATCTGCTCTCTT 59.822 55.000 0.00 0.00 0.00 2.85
993 1323 1.078214 CCGGAGCCAAGATTCTGCA 60.078 57.895 0.00 0.00 0.00 4.41
1122 1660 0.538057 CCGGCATGCCAGGTGATTAT 60.538 55.000 34.93 0.00 35.37 1.28
1123 1661 0.877071 CGGCATGCCAGGTGATTATC 59.123 55.000 34.93 4.81 35.37 1.75
1134 1677 6.998074 TGCCAGGTGATTATCTAATTAACCTG 59.002 38.462 23.25 23.25 46.77 4.00
1147 1690 2.552599 TAACCTGTTGCGATTGACCA 57.447 45.000 0.00 0.00 0.00 4.02
1212 1775 0.037326 ATGATCTTGGTGTCGCACGT 60.037 50.000 0.00 0.00 34.83 4.49
1514 2081 2.672478 CGAGAAGAAGTGGAAGTGCGAT 60.672 50.000 0.00 0.00 0.00 4.58
1649 2218 4.179599 CCCTCCCTCCCTCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
1677 2246 1.203287 GCCAATTTGCTCCTTCCACTC 59.797 52.381 0.00 0.00 0.00 3.51
1714 2287 4.130118 GACTGACTGACTGACAAATTGGT 58.870 43.478 0.00 0.00 0.00 3.67
1720 2293 0.823356 ACTGACAAATTGGTGGCGCT 60.823 50.000 7.64 0.00 0.00 5.92
1722 2295 0.749649 TGACAAATTGGTGGCGCTTT 59.250 45.000 7.64 0.00 0.00 3.51
1979 2577 2.621338 CGTCCATTTTAGCTGCTCTCA 58.379 47.619 4.91 0.00 0.00 3.27
1983 2581 2.606725 CCATTTTAGCTGCTCTCACTCG 59.393 50.000 4.91 0.00 0.00 4.18
1988 2586 2.487428 CTGCTCTCACTCGGGTCG 59.513 66.667 0.00 0.00 0.00 4.79
2060 2658 4.634443 AGTATGTTTTGGAGCGTTATGGTC 59.366 41.667 0.00 0.00 44.49 4.02
2072 2670 6.759827 GGAGCGTTATGGTCTTTGTAAGATTA 59.240 38.462 3.59 0.00 44.62 1.75
2092 2691 1.227292 GCGACGGGGAAGAAGGATC 60.227 63.158 0.00 0.00 0.00 3.36
2142 2741 1.153249 CCGAGACCGAGAGAGCTCT 60.153 63.158 18.28 18.28 43.78 4.09
2143 2742 0.105224 CCGAGACCGAGAGAGCTCTA 59.895 60.000 18.25 0.00 40.61 2.43
2176 2776 2.897969 AGTTTTTGTCCGAGAGCTAGGA 59.102 45.455 1.32 1.32 31.78 2.94
2177 2777 3.056465 AGTTTTTGTCCGAGAGCTAGGAG 60.056 47.826 5.41 0.00 35.02 3.69
2178 2778 1.475403 TTTGTCCGAGAGCTAGGAGG 58.525 55.000 5.41 0.00 35.02 4.30
2179 2779 0.624254 TTGTCCGAGAGCTAGGAGGA 59.376 55.000 5.41 0.94 35.02 3.71
2201 2801 2.223525 GGAGCAGTGACCGAGTACATAC 60.224 54.545 0.00 0.00 0.00 2.39
2202 2802 2.422479 GAGCAGTGACCGAGTACATACA 59.578 50.000 0.00 0.00 0.00 2.29
2203 2803 3.024547 AGCAGTGACCGAGTACATACAT 58.975 45.455 0.00 0.00 0.00 2.29
2204 2804 4.204799 AGCAGTGACCGAGTACATACATA 58.795 43.478 0.00 0.00 0.00 2.29
2245 2853 5.848036 CGCATCTCGAAATCCAATTGATTAC 59.152 40.000 7.12 0.00 42.97 1.89
2284 2893 7.803189 GCGTTAAATTCATAGAGAGAGAGAGAG 59.197 40.741 0.00 0.00 0.00 3.20
2285 2894 9.051679 CGTTAAATTCATAGAGAGAGAGAGAGA 57.948 37.037 0.00 0.00 0.00 3.10
2288 2897 8.915057 AAATTCATAGAGAGAGAGAGAGAGAG 57.085 38.462 0.00 0.00 0.00 3.20
2289 2898 7.862274 ATTCATAGAGAGAGAGAGAGAGAGA 57.138 40.000 0.00 0.00 0.00 3.10
2290 2899 6.907853 TCATAGAGAGAGAGAGAGAGAGAG 57.092 45.833 0.00 0.00 0.00 3.20
2302 2911 6.484643 AGAGAGAGAGAGAGAATTCAGATTCG 59.515 42.308 8.44 0.00 45.10 3.34
2303 2912 6.356556 AGAGAGAGAGAGAATTCAGATTCGA 58.643 40.000 8.44 0.00 45.10 3.71
2304 2913 6.260936 AGAGAGAGAGAGAATTCAGATTCGAC 59.739 42.308 8.44 0.00 45.10 4.20
2345 2969 2.423577 ACTTGGATCGTGTAAAGTGCC 58.576 47.619 0.00 0.00 31.82 5.01
2465 3091 4.073293 TCAGCCGAGAAAGAGAAAAGTT 57.927 40.909 0.00 0.00 0.00 2.66
2516 3151 1.152839 GACTAGGCTCGCTCCTCCT 60.153 63.158 0.00 0.00 37.66 3.69
2526 3161 1.301677 CGCTCCTCCTGTTGCTTTCC 61.302 60.000 0.00 0.00 0.00 3.13
2541 3176 1.544825 TTTCCGGCCCTGTCTCTCTG 61.545 60.000 0.00 0.00 0.00 3.35
2552 3187 3.367395 CCTGTCTCTCTGTATTGCACGAA 60.367 47.826 0.00 0.00 0.00 3.85
2563 3198 0.383737 TTGCACGAACTTTTAGCGCG 60.384 50.000 0.00 0.00 0.00 6.86
2573 3208 5.221682 CGAACTTTTAGCGCGTAACATTTAC 59.778 40.000 8.43 0.00 0.00 2.01
2574 3209 5.851047 ACTTTTAGCGCGTAACATTTACT 57.149 34.783 8.43 0.00 0.00 2.24
2575 3210 5.850931 ACTTTTAGCGCGTAACATTTACTC 58.149 37.500 8.43 0.00 0.00 2.59
2580 3215 4.990257 AGCGCGTAACATTTACTCTCTTA 58.010 39.130 8.43 0.00 0.00 2.10
2814 3471 3.691342 CGTCTTCCGTGGCCCAGA 61.691 66.667 0.00 0.00 0.00 3.86
2904 4289 2.365105 CCCAGTTCTCGGCCCCTA 60.365 66.667 0.00 0.00 0.00 3.53
3109 4510 1.151221 ATCAACAGCAGCACCACCA 59.849 52.632 0.00 0.00 0.00 4.17
3111 4512 2.519302 AACAGCAGCACCACCACC 60.519 61.111 0.00 0.00 0.00 4.61
3112 4513 3.357444 AACAGCAGCACCACCACCA 62.357 57.895 0.00 0.00 0.00 4.17
3113 4514 3.289834 CAGCAGCACCACCACCAC 61.290 66.667 0.00 0.00 0.00 4.16
3114 4515 4.586235 AGCAGCACCACCACCACC 62.586 66.667 0.00 0.00 0.00 4.61
3115 4516 4.892965 GCAGCACCACCACCACCA 62.893 66.667 0.00 0.00 0.00 4.17
3116 4517 2.595463 CAGCACCACCACCACCAG 60.595 66.667 0.00 0.00 0.00 4.00
3117 4518 4.586235 AGCACCACCACCACCAGC 62.586 66.667 0.00 0.00 0.00 4.85
3118 4519 4.892965 GCACCACCACCACCAGCA 62.893 66.667 0.00 0.00 0.00 4.41
3119 4520 2.123939 CACCACCACCACCAGCAA 60.124 61.111 0.00 0.00 0.00 3.91
3526 4952 2.859165 CTGTAAAAGGACTGCTGGGA 57.141 50.000 0.00 0.00 0.00 4.37
3527 4953 3.140325 CTGTAAAAGGACTGCTGGGAA 57.860 47.619 0.00 0.00 0.00 3.97
3617 5057 2.498078 TCCTTGGCCGTTCTTTTGTTTT 59.502 40.909 0.00 0.00 0.00 2.43
3753 5225 2.114616 TCTTCCTCCATCAGCTCTTCC 58.885 52.381 0.00 0.00 0.00 3.46
3833 5306 1.000233 CCACTGGCCCCTGCATTTA 60.000 57.895 0.00 0.00 40.13 1.40
3875 5348 5.382303 CACAGTGCGTAAGTGGAATTTAAG 58.618 41.667 0.00 0.00 41.68 1.85
3877 5350 5.178809 ACAGTGCGTAAGTGGAATTTAAGTC 59.821 40.000 0.00 0.00 41.68 3.01
3878 5351 4.694037 AGTGCGTAAGTGGAATTTAAGTCC 59.306 41.667 4.30 4.30 41.68 3.85
3949 5461 6.350906 CATTCAAACTATGCCCCAAATGATT 58.649 36.000 0.00 0.00 0.00 2.57
3960 5472 1.361793 CAAATGATTTTGGGCCTGCG 58.638 50.000 4.53 0.00 38.85 5.18
3964 5476 3.683587 GATTTTGGGCCTGCGTCGC 62.684 63.158 11.10 11.10 0.00 5.19
4060 5657 2.284276 TGCATGCATGGGTTGGTGG 61.284 57.895 27.34 0.00 0.00 4.61
4077 5674 2.608090 GGTGGTCGATGCTTTAAGTAGC 59.392 50.000 0.00 0.00 41.59 3.58
4086 5688 6.918569 TCGATGCTTTAAGTAGCTTATCTCAC 59.081 38.462 0.00 0.00 41.76 3.51
4094 5696 8.818622 TTAAGTAGCTTATCTCACTCACCTTA 57.181 34.615 0.00 0.00 0.00 2.69
4127 5729 7.499563 TGTTGCATACTTTTGTGGAAGTAGTAA 59.500 33.333 0.00 1.03 43.25 2.24
4128 5730 7.667043 TGCATACTTTTGTGGAAGTAGTAAG 57.333 36.000 4.15 0.00 43.25 2.34
4188 5801 6.146837 CGGCCTCATCTTTCAGATAATTGTAG 59.853 42.308 0.00 0.00 32.12 2.74
4189 5802 6.995091 GGCCTCATCTTTCAGATAATTGTAGT 59.005 38.462 0.00 0.00 32.12 2.73
4190 5803 7.500559 GGCCTCATCTTTCAGATAATTGTAGTT 59.499 37.037 0.00 0.00 32.12 2.24
4207 5820 9.590451 AATTGTAGTTGCATCCTAAATTTCATG 57.410 29.630 0.00 0.00 0.00 3.07
4214 5830 5.111293 GCATCCTAAATTTCATGTTGTGGG 58.889 41.667 0.00 0.00 0.00 4.61
4222 5838 1.935799 TCATGTTGTGGGGGAAATGG 58.064 50.000 0.00 0.00 0.00 3.16
4223 5839 0.249955 CATGTTGTGGGGGAAATGGC 59.750 55.000 0.00 0.00 0.00 4.40
4237 5853 4.499696 GGGAAATGGCGACTTAAATCCATG 60.500 45.833 0.00 0.00 39.12 3.66
4246 5862 4.552767 CGACTTAAATCCATGATTGGCGAC 60.553 45.833 0.00 0.00 43.29 5.19
4283 5899 4.147449 TGATGGCGCTGGACGGAG 62.147 66.667 7.64 0.00 43.93 4.63
4331 5949 1.355043 AGGTAGACGTCCTCTTCCAGT 59.645 52.381 13.01 0.00 38.64 4.00
4353 5971 7.415541 CCAGTACAATGTCACCCTGAATAATTG 60.416 40.741 0.00 0.00 33.64 2.32
4355 5973 4.160252 ACAATGTCACCCTGAATAATTGGC 59.840 41.667 0.00 0.00 32.62 4.52
4358 5976 2.427095 GTCACCCTGAATAATTGGCACC 59.573 50.000 0.00 0.00 0.00 5.01
4359 5977 2.042297 TCACCCTGAATAATTGGCACCA 59.958 45.455 0.00 0.00 0.00 4.17
4360 5978 2.166254 CACCCTGAATAATTGGCACCAC 59.834 50.000 0.00 0.00 0.00 4.16
4427 6053 8.085296 GTGTTCACATGGAATAATTGGTTGTTA 58.915 33.333 0.00 0.00 37.93 2.41
4452 6079 3.997021 ACAGTGGATTCTGTGAAACGATC 59.003 43.478 0.00 0.00 45.40 3.69
4459 6086 5.106157 GGATTCTGTGAAACGATCCAATGTT 60.106 40.000 0.00 0.00 42.39 2.71
4460 6087 5.766150 TTCTGTGAAACGATCCAATGTTT 57.234 34.783 0.00 0.00 42.39 2.83
4461 6088 5.766150 TCTGTGAAACGATCCAATGTTTT 57.234 34.783 0.00 0.00 42.39 2.43
4462 6089 6.142818 TCTGTGAAACGATCCAATGTTTTT 57.857 33.333 0.00 0.00 42.39 1.94
4481 6108 5.340439 TTTTTATTTTGACCCAACACCGT 57.660 34.783 0.00 0.00 0.00 4.83
4482 6109 6.461110 TTTTTATTTTGACCCAACACCGTA 57.539 33.333 0.00 0.00 0.00 4.02
4483 6110 5.692613 TTTATTTTGACCCAACACCGTAG 57.307 39.130 0.00 0.00 0.00 3.51
4484 6111 3.495434 ATTTTGACCCAACACCGTAGA 57.505 42.857 0.00 0.00 0.00 2.59
4485 6112 3.278668 TTTTGACCCAACACCGTAGAA 57.721 42.857 0.00 0.00 0.00 2.10
4486 6113 2.243602 TTGACCCAACACCGTAGAAC 57.756 50.000 0.00 0.00 0.00 3.01
4487 6114 1.121378 TGACCCAACACCGTAGAACA 58.879 50.000 0.00 0.00 0.00 3.18
4488 6115 1.485480 TGACCCAACACCGTAGAACAA 59.515 47.619 0.00 0.00 0.00 2.83
4489 6116 2.093075 TGACCCAACACCGTAGAACAAA 60.093 45.455 0.00 0.00 0.00 2.83
4490 6117 2.944349 GACCCAACACCGTAGAACAAAA 59.056 45.455 0.00 0.00 0.00 2.44
4491 6118 3.558033 ACCCAACACCGTAGAACAAAAT 58.442 40.909 0.00 0.00 0.00 1.82
4492 6119 3.316868 ACCCAACACCGTAGAACAAAATG 59.683 43.478 0.00 0.00 0.00 2.32
4493 6120 3.316868 CCCAACACCGTAGAACAAAATGT 59.683 43.478 0.00 0.00 0.00 2.71
4494 6121 4.202070 CCCAACACCGTAGAACAAAATGTT 60.202 41.667 0.00 0.00 44.37 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.432051 GACGACGAGGATGGCTGGG 62.432 68.421 0.00 0.00 0.00 4.45
4 5 2.065906 GAGGAGACGACGAGGATGGC 62.066 65.000 0.00 0.00 0.00 4.40
6 7 0.378962 GTGAGGAGACGACGAGGATG 59.621 60.000 0.00 0.00 0.00 3.51
7 8 0.253610 AGTGAGGAGACGACGAGGAT 59.746 55.000 0.00 0.00 0.00 3.24
8 9 0.391395 GAGTGAGGAGACGACGAGGA 60.391 60.000 0.00 0.00 0.00 3.71
9 10 1.370587 GGAGTGAGGAGACGACGAGG 61.371 65.000 0.00 0.00 0.00 4.63
10 11 1.697772 CGGAGTGAGGAGACGACGAG 61.698 65.000 0.00 0.00 0.00 4.18
11 12 1.740664 CGGAGTGAGGAGACGACGA 60.741 63.158 0.00 0.00 0.00 4.20
12 13 1.575576 AACGGAGTGAGGAGACGACG 61.576 60.000 0.00 0.00 45.00 5.12
13 14 0.168568 GAACGGAGTGAGGAGACGAC 59.831 60.000 0.00 0.00 45.00 4.34
14 15 0.959372 GGAACGGAGTGAGGAGACGA 60.959 60.000 0.00 0.00 45.00 4.20
15 16 0.961358 AGGAACGGAGTGAGGAGACG 60.961 60.000 0.00 0.00 45.00 4.18
32 33 5.532025 GTACATGACGAGGAAGAAAAAGG 57.468 43.478 0.00 0.00 0.00 3.11
49 50 3.060020 CTCCCACGGTCGCGTACAT 62.060 63.158 5.77 0.00 0.00 2.29
69 70 2.225019 GCTCCAGAACATCACAGTTGTG 59.775 50.000 5.91 5.91 46.91 3.33
82 83 6.888088 TGTAGTACTAGTACAATGCTCCAGAA 59.112 38.462 29.87 4.31 38.48 3.02
99 100 9.482627 GTCGTATTGGTAGTAGTATGTAGTACT 57.517 37.037 0.00 0.00 45.49 2.73
100 101 9.482627 AGTCGTATTGGTAGTAGTATGTAGTAC 57.517 37.037 0.00 0.00 33.35 2.73
104 105 6.073602 CGCAGTCGTATTGGTAGTAGTATGTA 60.074 42.308 0.00 0.00 0.00 2.29
105 106 5.277683 CGCAGTCGTATTGGTAGTAGTATGT 60.278 44.000 0.00 0.00 0.00 2.29
106 107 5.049886 TCGCAGTCGTATTGGTAGTAGTATG 60.050 44.000 0.00 0.00 36.96 2.39
107 108 5.059161 TCGCAGTCGTATTGGTAGTAGTAT 58.941 41.667 0.00 0.00 36.96 2.12
108 109 4.441792 TCGCAGTCGTATTGGTAGTAGTA 58.558 43.478 0.00 0.00 36.96 1.82
109 110 3.273434 TCGCAGTCGTATTGGTAGTAGT 58.727 45.455 0.00 0.00 36.96 2.73
110 111 3.311871 ACTCGCAGTCGTATTGGTAGTAG 59.688 47.826 0.00 0.00 36.96 2.57
114 115 4.815846 TGTATACTCGCAGTCGTATTGGTA 59.184 41.667 4.17 0.00 36.96 3.25
128 129 7.963465 GTGACCTGATGTATGTATGTATACTCG 59.037 40.741 4.17 0.00 35.16 4.18
171 172 3.554934 TGCATGCCAGGGTATTTAAGAG 58.445 45.455 16.68 0.00 0.00 2.85
263 264 2.233922 CGTACCCTGACTCCAACTCAAT 59.766 50.000 0.00 0.00 0.00 2.57
296 297 3.376078 GGTGTCGAGGGGTGCGTA 61.376 66.667 0.00 0.00 0.00 4.42
321 343 1.942657 TGTCAGCTGAAGCAAACAGAC 59.057 47.619 20.19 2.72 45.16 3.51
322 344 2.330440 TGTCAGCTGAAGCAAACAGA 57.670 45.000 20.19 0.00 45.16 3.41
323 345 2.097954 TGTTGTCAGCTGAAGCAAACAG 59.902 45.455 20.19 0.00 45.16 3.16
324 346 2.090760 TGTTGTCAGCTGAAGCAAACA 58.909 42.857 20.19 21.38 45.16 2.83
402 683 6.373774 GCCTTCTTCTTTCATCTGAATCTGAA 59.626 38.462 0.00 0.02 33.54 3.02
789 1113 2.102925 GGGAGAAGAGAGCAGATGAAGG 59.897 54.545 0.00 0.00 0.00 3.46
805 1129 1.837533 ATGAGGAAGGGTGGGGGAGA 61.838 60.000 0.00 0.00 0.00 3.71
973 1303 1.821332 CAGAATCTTGGCTCCGGGC 60.821 63.158 0.00 3.56 40.90 6.13
980 1310 1.139095 GCAGCTGCAGAATCTTGGC 59.861 57.895 33.36 0.44 41.59 4.52
981 1311 0.963856 TGGCAGCTGCAGAATCTTGG 60.964 55.000 37.63 0.00 44.36 3.61
982 1312 1.103803 ATGGCAGCTGCAGAATCTTG 58.896 50.000 37.63 7.98 44.36 3.02
993 1323 2.685017 TCGACCTCCATGGCAGCT 60.685 61.111 6.96 0.00 40.22 4.24
1122 1660 5.353123 GGTCAATCGCAACAGGTTAATTAGA 59.647 40.000 0.00 0.00 0.00 2.10
1123 1661 5.123186 TGGTCAATCGCAACAGGTTAATTAG 59.877 40.000 0.00 0.00 0.00 1.73
1134 1677 1.052287 CGCTTTTGGTCAATCGCAAC 58.948 50.000 0.00 0.00 0.00 4.17
1147 1690 3.426568 GCCTCAGCTCGCGCTTTT 61.427 61.111 5.56 0.00 46.47 2.27
1514 2081 2.353406 GGCGTACTTCTTGGAGCACTTA 60.353 50.000 0.00 0.00 0.00 2.24
1668 2237 4.223923 AGTCAGTAAATGGAGAGTGGAAGG 59.776 45.833 0.00 0.00 0.00 3.46
1677 2246 5.047731 TCAGTCAGTCAGTCAGTAAATGGAG 60.048 44.000 0.00 0.00 0.00 3.86
1720 2293 1.228245 GCTGTCCCTCCTGCACAAA 60.228 57.895 0.00 0.00 0.00 2.83
1722 2295 2.116983 GAAGCTGTCCCTCCTGCACA 62.117 60.000 0.00 0.00 0.00 4.57
1979 2577 0.399075 AAATTTGACCCGACCCGAGT 59.601 50.000 0.00 0.00 0.00 4.18
2060 2658 2.280708 CCCGTCGCGTAATCTTACAAAG 59.719 50.000 5.77 0.00 33.28 2.77
2072 2670 4.065281 CCTTCTTCCCCGTCGCGT 62.065 66.667 5.77 0.00 0.00 6.01
2092 2691 5.278463 CCAGACAAAAATCCACCACAGTAAG 60.278 44.000 0.00 0.00 0.00 2.34
2154 2754 4.084287 TCCTAGCTCTCGGACAAAAACTA 58.916 43.478 0.00 0.00 0.00 2.24
2176 2776 1.680651 CTCGGTCACTGCTCCTCCT 60.681 63.158 0.00 0.00 0.00 3.69
2177 2777 0.680280 TACTCGGTCACTGCTCCTCC 60.680 60.000 0.00 0.00 0.00 4.30
2178 2778 0.452585 GTACTCGGTCACTGCTCCTC 59.547 60.000 0.00 0.00 0.00 3.71
2179 2779 0.251209 TGTACTCGGTCACTGCTCCT 60.251 55.000 0.00 0.00 0.00 3.69
2201 2801 1.202177 GGGCGTGCAAGAACATGTATG 60.202 52.381 2.99 0.00 0.00 2.39
2202 2802 1.094785 GGGCGTGCAAGAACATGTAT 58.905 50.000 2.99 0.00 0.00 2.29
2203 2803 1.295357 CGGGCGTGCAAGAACATGTA 61.295 55.000 2.99 0.00 0.00 2.29
2204 2804 2.616330 CGGGCGTGCAAGAACATGT 61.616 57.895 2.99 0.00 0.00 3.21
2245 2853 6.583160 TGAATTTAACGCGTGTGTAAACTAG 58.417 36.000 14.98 0.00 0.00 2.57
2284 2893 6.255453 CCAAAGTCGAATCTGAATTCTCTCTC 59.745 42.308 7.05 0.00 39.36 3.20
2285 2894 6.105333 CCAAAGTCGAATCTGAATTCTCTCT 58.895 40.000 7.05 0.00 39.36 3.10
2286 2895 5.293079 CCCAAAGTCGAATCTGAATTCTCTC 59.707 44.000 7.05 0.00 39.36 3.20
2288 2897 5.178797 TCCCAAAGTCGAATCTGAATTCTC 58.821 41.667 7.05 0.00 39.36 2.87
2289 2898 5.165961 TCCCAAAGTCGAATCTGAATTCT 57.834 39.130 7.05 0.00 39.36 2.40
2290 2899 4.201861 GCTCCCAAAGTCGAATCTGAATTC 60.202 45.833 0.00 0.00 38.34 2.17
2302 2911 3.135530 AGGATCACTATGCTCCCAAAGTC 59.864 47.826 0.00 0.00 33.30 3.01
2303 2912 3.118531 AGGATCACTATGCTCCCAAAGT 58.881 45.455 0.00 0.00 33.30 2.66
2304 2913 3.853355 AGGATCACTATGCTCCCAAAG 57.147 47.619 0.00 0.00 33.30 2.77
2345 2969 5.936686 AATCAGAACTCACAACTCACATG 57.063 39.130 0.00 0.00 0.00 3.21
2465 3091 1.025113 TTTTCGTGTGTTCGTGGGCA 61.025 50.000 0.00 0.00 0.00 5.36
2516 3151 2.597217 CAGGGCCGGAAAGCAACA 60.597 61.111 5.05 0.00 0.00 3.33
2526 3161 1.115467 AATACAGAGAGACAGGGCCG 58.885 55.000 0.00 0.00 0.00 6.13
2541 3176 2.838452 GCGCTAAAAGTTCGTGCAATAC 59.162 45.455 0.00 0.00 34.52 1.89
2552 3187 5.636543 AGAGTAAATGTTACGCGCTAAAAGT 59.363 36.000 5.73 0.00 0.00 2.66
2580 3215 7.278203 CAGCAAGATTCAGATCGCAGATAATAT 59.722 37.037 0.00 0.00 45.12 1.28
2590 3233 2.547826 TCAGCAGCAAGATTCAGATCG 58.452 47.619 0.00 0.00 37.37 3.69
2814 3471 3.900892 CTCCGGATACTGCGCCGT 61.901 66.667 3.57 10.01 45.85 5.68
3109 4510 2.123897 GGTGGTGTTGCTGGTGGT 60.124 61.111 0.00 0.00 0.00 4.16
3111 4512 2.195567 CCTGGTGGTGTTGCTGGTG 61.196 63.158 0.00 0.00 0.00 4.17
3112 4513 2.195683 CCTGGTGGTGTTGCTGGT 59.804 61.111 0.00 0.00 0.00 4.00
3113 4514 1.601759 CTCCTGGTGGTGTTGCTGG 60.602 63.158 0.00 0.00 34.23 4.85
3114 4515 2.263741 GCTCCTGGTGGTGTTGCTG 61.264 63.158 0.00 0.00 34.23 4.41
3115 4516 2.113986 GCTCCTGGTGGTGTTGCT 59.886 61.111 0.00 0.00 34.23 3.91
3116 4517 2.985847 GGCTCCTGGTGGTGTTGC 60.986 66.667 0.00 0.00 34.23 4.17
3117 4518 2.282462 GGGCTCCTGGTGGTGTTG 60.282 66.667 0.00 0.00 34.23 3.33
3118 4519 2.162906 ATGGGCTCCTGGTGGTGTT 61.163 57.895 0.00 0.00 34.23 3.32
3119 4520 2.532715 ATGGGCTCCTGGTGGTGT 60.533 61.111 0.00 0.00 34.23 4.16
3158 4559 3.751246 GGCCATTGCTGCAGCGAA 61.751 61.111 31.66 25.37 45.83 4.70
3434 4849 2.649034 GAGCCGAACGTGTCTGGA 59.351 61.111 0.00 0.00 0.00 3.86
3526 4952 3.985925 GCTGTGCTACGTGTTACTACTTT 59.014 43.478 0.00 0.00 0.00 2.66
3527 4953 3.005050 TGCTGTGCTACGTGTTACTACTT 59.995 43.478 0.00 0.00 0.00 2.24
3617 5057 8.429641 ACTTACTTTCTTGATTGTGACCTAAGA 58.570 33.333 0.00 0.00 0.00 2.10
3753 5225 1.199624 GTGCAAACGACAAAAGCAGG 58.800 50.000 0.00 0.00 35.66 4.85
3833 5306 3.997064 CTGCTCTAGTGCCGCGCTT 62.997 63.158 12.53 0.00 0.00 4.68
3901 5380 1.153005 CATCTCCCAGCTGAAGGCC 60.153 63.158 17.39 0.00 43.05 5.19
3960 5472 1.078759 CAATCTGGTGAGGACGCGAC 61.079 60.000 15.93 6.56 0.00 5.19
3964 5476 1.021390 GTGCCAATCTGGTGAGGACG 61.021 60.000 0.00 0.00 40.46 4.79
3965 5477 0.036732 TGTGCCAATCTGGTGAGGAC 59.963 55.000 0.00 0.00 40.46 3.85
3966 5478 0.770499 TTGTGCCAATCTGGTGAGGA 59.230 50.000 0.00 0.00 40.46 3.71
3967 5479 1.843368 ATTGTGCCAATCTGGTGAGG 58.157 50.000 0.00 0.00 40.46 3.86
3968 5480 3.947910 AAATTGTGCCAATCTGGTGAG 57.052 42.857 1.57 0.00 40.46 3.51
4060 5657 6.918569 TGAGATAAGCTACTTAAAGCATCGAC 59.081 38.462 2.15 0.03 45.30 4.20
4077 5674 6.142818 CCTGACTAAGGTGAGTGAGATAAG 57.857 45.833 0.00 0.00 41.74 1.73
4094 5696 4.036734 CACAAAAGTATGCAACACCTGACT 59.963 41.667 0.00 0.00 0.00 3.41
4127 5729 1.066858 CGTCATGCACCCAACTACTCT 60.067 52.381 0.00 0.00 0.00 3.24
4128 5730 1.067142 TCGTCATGCACCCAACTACTC 60.067 52.381 0.00 0.00 0.00 2.59
4188 5801 6.091169 CCACAACATGAAATTTAGGATGCAAC 59.909 38.462 0.00 0.00 0.00 4.17
4189 5802 6.164876 CCACAACATGAAATTTAGGATGCAA 58.835 36.000 0.00 0.00 0.00 4.08
4190 5803 5.337410 CCCACAACATGAAATTTAGGATGCA 60.337 40.000 0.00 0.00 0.00 3.96
4207 5820 1.605165 TCGCCATTTCCCCCACAAC 60.605 57.895 0.00 0.00 0.00 3.32
4214 5830 3.020984 TGGATTTAAGTCGCCATTTCCC 58.979 45.455 0.00 0.00 0.00 3.97
4246 5862 4.793071 TCACATTAAAAATCACAGGCACG 58.207 39.130 0.00 0.00 0.00 5.34
4299 5917 3.504375 ACGTCTACCTAATCATACCCCC 58.496 50.000 0.00 0.00 0.00 5.40
4300 5918 3.509184 GGACGTCTACCTAATCATACCCC 59.491 52.174 16.46 0.00 0.00 4.95
4301 5919 4.405548 AGGACGTCTACCTAATCATACCC 58.594 47.826 16.46 0.00 35.84 3.69
4302 5920 5.315348 AGAGGACGTCTACCTAATCATACC 58.685 45.833 16.46 0.00 37.93 2.73
4316 5934 3.056749 ACATTGTACTGGAAGAGGACGTC 60.057 47.826 7.13 7.13 37.43 4.34
4331 5949 5.359576 GCCAATTATTCAGGGTGACATTGTA 59.640 40.000 0.00 0.00 0.00 2.41
4353 5971 1.298859 CTACGCTTCCTTGTGGTGCC 61.299 60.000 0.00 0.00 33.16 5.01
4355 5973 0.673644 CCCTACGCTTCCTTGTGGTG 60.674 60.000 0.00 0.00 34.23 4.17
4358 5976 1.726853 CTTCCCTACGCTTCCTTGTG 58.273 55.000 0.00 0.00 0.00 3.33
4359 5977 0.036294 GCTTCCCTACGCTTCCTTGT 60.036 55.000 0.00 0.00 0.00 3.16
4360 5978 0.036388 TGCTTCCCTACGCTTCCTTG 60.036 55.000 0.00 0.00 0.00 3.61
4459 6086 5.340439 ACGGTGTTGGGTCAAAATAAAAA 57.660 34.783 0.00 0.00 0.00 1.94
4460 6087 5.826737 TCTACGGTGTTGGGTCAAAATAAAA 59.173 36.000 0.00 0.00 0.00 1.52
4461 6088 5.374921 TCTACGGTGTTGGGTCAAAATAAA 58.625 37.500 0.00 0.00 0.00 1.40
4462 6089 4.970711 TCTACGGTGTTGGGTCAAAATAA 58.029 39.130 0.00 0.00 0.00 1.40
4463 6090 4.620589 TCTACGGTGTTGGGTCAAAATA 57.379 40.909 0.00 0.00 0.00 1.40
4464 6091 3.495434 TCTACGGTGTTGGGTCAAAAT 57.505 42.857 0.00 0.00 0.00 1.82
4465 6092 2.944349 GTTCTACGGTGTTGGGTCAAAA 59.056 45.455 0.00 0.00 0.00 2.44
4466 6093 2.093075 TGTTCTACGGTGTTGGGTCAAA 60.093 45.455 0.00 0.00 0.00 2.69
4467 6094 1.485480 TGTTCTACGGTGTTGGGTCAA 59.515 47.619 0.00 0.00 0.00 3.18
4468 6095 1.121378 TGTTCTACGGTGTTGGGTCA 58.879 50.000 0.00 0.00 0.00 4.02
4469 6096 2.243602 TTGTTCTACGGTGTTGGGTC 57.756 50.000 0.00 0.00 0.00 4.46
4470 6097 2.713863 TTTGTTCTACGGTGTTGGGT 57.286 45.000 0.00 0.00 0.00 4.51
4471 6098 3.316868 ACATTTTGTTCTACGGTGTTGGG 59.683 43.478 0.00 0.00 0.00 4.12
4472 6099 4.561735 ACATTTTGTTCTACGGTGTTGG 57.438 40.909 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.