Multiple sequence alignment - TraesCS4D01G261900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G261900 chr4D 100.000 3766 0 0 1 3766 432938476 432934711 0.000000e+00 6955.0
1 TraesCS4D01G261900 chr4D 100.000 3688 0 0 4005 7692 432934472 432930785 0.000000e+00 6811.0
2 TraesCS4D01G261900 chr4D 97.222 108 1 2 7585 7692 67422143 67422038 1.710000e-41 182.0
3 TraesCS4D01G261900 chr4D 98.020 101 2 0 7592 7692 451633948 451633848 7.930000e-40 176.0
4 TraesCS4D01G261900 chr4D 95.745 47 2 0 1147 1193 432937249 432937203 8.280000e-10 76.8
5 TraesCS4D01G261900 chr4D 95.745 47 2 0 1228 1274 432937330 432937284 8.280000e-10 76.8
6 TraesCS4D01G261900 chr4B 92.894 3265 156 30 527 3766 531056563 531053350 0.000000e+00 4674.0
7 TraesCS4D01G261900 chr4B 96.324 2149 63 8 4024 6170 531053141 531051007 0.000000e+00 3517.0
8 TraesCS4D01G261900 chr4B 88.795 589 54 6 1 584 531057130 531056549 0.000000e+00 712.0
9 TraesCS4D01G261900 chr4B 86.279 430 41 8 6511 6939 531050421 531050009 1.180000e-122 451.0
10 TraesCS4D01G261900 chr4B 87.624 202 22 3 6252 6450 531050715 531050514 1.670000e-56 231.0
11 TraesCS4D01G261900 chr4B 90.099 101 10 0 322 422 151437649 151437549 1.740000e-26 132.0
12 TraesCS4D01G261900 chr4B 95.745 47 2 0 1147 1193 531055892 531055846 8.280000e-10 76.8
13 TraesCS4D01G261900 chr4B 93.478 46 3 0 1229 1274 531055972 531055927 1.390000e-07 69.4
14 TraesCS4D01G261900 chr4A 93.469 2756 114 31 1 2739 34255956 34253250 0.000000e+00 4032.0
15 TraesCS4D01G261900 chr4A 90.140 1856 119 34 5114 6939 34251493 34249672 0.000000e+00 2355.0
16 TraesCS4D01G261900 chr4A 95.900 1000 33 7 2767 3766 34253252 34252261 0.000000e+00 1613.0
17 TraesCS4D01G261900 chr4A 94.379 765 20 10 4102 4863 34252233 34251489 0.000000e+00 1153.0
18 TraesCS4D01G261900 chr4A 81.240 645 96 19 6944 7581 182120527 182119901 1.490000e-136 497.0
19 TraesCS4D01G261900 chr4A 97.143 105 2 1 7589 7692 56120025 56120129 7.930000e-40 176.0
20 TraesCS4D01G261900 chr4A 94.118 51 2 1 1144 1193 34254760 34254710 8.280000e-10 76.8
21 TraesCS4D01G261900 chr3D 84.455 624 87 7 6939 7557 523662113 523661495 2.370000e-169 606.0
22 TraesCS4D01G261900 chr3D 83.251 609 79 19 6982 7581 23815440 23814846 8.780000e-149 538.0
23 TraesCS4D01G261900 chr3D 92.453 106 7 1 322 427 307677646 307677542 4.810000e-32 150.0
24 TraesCS4D01G261900 chr3B 82.853 659 83 20 6936 7579 214815785 214815142 1.450000e-156 564.0
25 TraesCS4D01G261900 chr7D 81.900 663 95 17 6938 7581 367495333 367494677 3.160000e-148 536.0
26 TraesCS4D01G261900 chr7D 94.783 115 6 0 7578 7692 311814381 311814495 6.130000e-41 180.0
27 TraesCS4D01G261900 chr7D 77.419 341 49 24 117 437 549545608 549545276 2.210000e-40 178.0
28 TraesCS4D01G261900 chr7D 94.690 113 5 1 7580 7692 256575190 256575079 2.850000e-39 174.0
29 TraesCS4D01G261900 chr3A 82.680 612 89 12 6939 7540 658649184 658648580 1.900000e-145 527.0
30 TraesCS4D01G261900 chr3A 84.162 543 73 8 6939 7477 136610590 136610057 1.480000e-141 514.0
31 TraesCS4D01G261900 chr2A 81.487 659 90 23 6939 7580 618439412 618438769 5.320000e-141 512.0
32 TraesCS4D01G261900 chr2A 95.238 84 4 0 1 84 127996254 127996171 4.840000e-27 134.0
33 TraesCS4D01G261900 chr7B 81.746 630 89 19 6939 7558 54721576 54720963 3.200000e-138 503.0
34 TraesCS4D01G261900 chr7B 92.453 106 7 1 322 427 24715012 24714908 4.810000e-32 150.0
35 TraesCS4D01G261900 chr7B 89.655 116 11 1 322 437 593922113 593921999 6.220000e-31 147.0
36 TraesCS4D01G261900 chr5A 76.853 661 94 43 6941 7581 657367809 657368430 1.250000e-82 318.0
37 TraesCS4D01G261900 chr5A 76.356 461 65 26 1 425 30518169 30518621 2.810000e-49 207.0
38 TraesCS4D01G261900 chr5A 90.826 109 9 1 319 427 500275561 500275668 2.240000e-30 145.0
39 TraesCS4D01G261900 chr5A 91.509 106 8 1 322 427 500834278 500834174 2.240000e-30 145.0
40 TraesCS4D01G261900 chr6D 79.310 435 53 19 1 425 450637924 450638331 3.540000e-68 270.0
41 TraesCS4D01G261900 chr6D 77.303 304 41 13 1 279 426111984 426112284 3.720000e-33 154.0
42 TraesCS4D01G261900 chr6D 75.556 270 48 11 175 427 4983451 4983719 4.880000e-22 117.0
43 TraesCS4D01G261900 chrUn 77.996 459 63 24 1 425 65834925 65834471 3.560000e-63 254.0
44 TraesCS4D01G261900 chrUn 78.730 315 43 17 1 295 345534725 345534415 1.020000e-43 189.0
45 TraesCS4D01G261900 chrUn 78.730 315 43 17 1 295 388625755 388625445 1.020000e-43 189.0
46 TraesCS4D01G261900 chr5B 77.996 459 63 23 1 425 36795557 36796011 3.560000e-63 254.0
47 TraesCS4D01G261900 chr5B 77.996 459 63 23 1 425 36825556 36826010 3.560000e-63 254.0
48 TraesCS4D01G261900 chr5B 97.248 109 3 0 7584 7692 556141156 556141264 1.320000e-42 185.0
49 TraesCS4D01G261900 chr5B 96.471 85 3 0 1 85 36616036 36615952 2.890000e-29 141.0
50 TraesCS4D01G261900 chr6A 78.422 431 47 25 1 427 596159252 596159640 9.980000e-59 239.0
51 TraesCS4D01G261900 chr6A 80.000 290 44 10 1 279 571027838 571028124 1.310000e-47 202.0
52 TraesCS4D01G261900 chr6A 96.078 102 4 0 7591 7692 173182154 173182053 4.770000e-37 167.0
53 TraesCS4D01G261900 chr6B 77.117 437 57 33 1 427 684382898 684383301 6.050000e-51 213.0
54 TraesCS4D01G261900 chr6B 82.500 240 31 8 3 233 641407236 641407473 4.710000e-47 200.0
55 TraesCS4D01G261900 chr6B 92.661 109 7 1 319 427 687831882 687831989 1.030000e-33 156.0
56 TraesCS4D01G261900 chr6B 80.729 192 32 4 197 383 456771252 456771443 2.240000e-30 145.0
57 TraesCS4D01G261900 chr5D 95.413 109 5 0 7584 7692 179273205 179273097 2.850000e-39 174.0
58 TraesCS4D01G261900 chr5D 93.913 115 4 3 7578 7691 179272354 179272466 3.690000e-38 171.0
59 TraesCS4D01G261900 chr7A 91.509 106 8 1 322 427 339973336 339973232 2.240000e-30 145.0
60 TraesCS4D01G261900 chr7A 89.908 109 9 2 322 428 635032550 635032442 1.040000e-28 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G261900 chr4D 432930785 432938476 7691 True 3479.900000 6955 97.872500 1 7692 4 chr4D.!!$R3 7691
1 TraesCS4D01G261900 chr4B 531050009 531057130 7121 True 1390.171429 4674 91.591286 1 6939 7 chr4B.!!$R2 6938
2 TraesCS4D01G261900 chr4A 34249672 34255956 6284 True 1845.960000 4032 93.601200 1 6939 5 chr4A.!!$R2 6938
3 TraesCS4D01G261900 chr4A 182119901 182120527 626 True 497.000000 497 81.240000 6944 7581 1 chr4A.!!$R1 637
4 TraesCS4D01G261900 chr3D 523661495 523662113 618 True 606.000000 606 84.455000 6939 7557 1 chr3D.!!$R3 618
5 TraesCS4D01G261900 chr3D 23814846 23815440 594 True 538.000000 538 83.251000 6982 7581 1 chr3D.!!$R1 599
6 TraesCS4D01G261900 chr3B 214815142 214815785 643 True 564.000000 564 82.853000 6936 7579 1 chr3B.!!$R1 643
7 TraesCS4D01G261900 chr7D 367494677 367495333 656 True 536.000000 536 81.900000 6938 7581 1 chr7D.!!$R2 643
8 TraesCS4D01G261900 chr3A 658648580 658649184 604 True 527.000000 527 82.680000 6939 7540 1 chr3A.!!$R2 601
9 TraesCS4D01G261900 chr3A 136610057 136610590 533 True 514.000000 514 84.162000 6939 7477 1 chr3A.!!$R1 538
10 TraesCS4D01G261900 chr2A 618438769 618439412 643 True 512.000000 512 81.487000 6939 7580 1 chr2A.!!$R2 641
11 TraesCS4D01G261900 chr7B 54720963 54721576 613 True 503.000000 503 81.746000 6939 7558 1 chr7B.!!$R2 619
12 TraesCS4D01G261900 chr5A 657367809 657368430 621 False 318.000000 318 76.853000 6941 7581 1 chr5A.!!$F3 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 231 1.270518 CCATTAGATCCGAGCCCAGTG 60.271 57.143 0.00 0.0 0.00 3.66 F
1645 1735 0.108945 GCTCCAAATTGGCTGCACTC 60.109 55.000 19.33 0.0 37.47 3.51 F
1753 1851 0.317479 GTTATACTCATCGGGCGCCT 59.683 55.000 28.56 6.9 0.00 5.52 F
3578 3712 0.250338 ACAGGCAAACTCTCGGGAAC 60.250 55.000 0.00 0.0 0.00 3.62 F
4874 5011 0.912486 ACATGAGTTGCTACCCTCCC 59.088 55.000 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1939 2038 0.407139 GCCCCAGCCATTCTCCATAT 59.593 55.0 0.00 0.00 0.00 1.78 R
2994 3124 0.684153 AGAGAGAGAGAGCACCAGCC 60.684 60.0 0.00 0.00 43.56 4.85 R
3708 3842 1.035139 GGGATTTATGTGCTGCAGGG 58.965 55.0 17.12 0.00 0.00 4.45 R
4968 5105 0.034089 GCCCTGGGTTACAGCTGAAT 60.034 55.0 23.35 0.27 46.14 2.57 R
6732 7160 0.109532 TGTCCATTTTGGCACGAGGA 59.890 50.0 0.00 0.00 37.47 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.704566 AGCGGAGATTATTAGTCCACACA 59.295 43.478 0.00 0.00 0.00 3.72
59 60 6.614657 TCCATTGAGAGTGTAGGATATCTGA 58.385 40.000 2.05 0.00 0.00 3.27
85 86 2.679837 CACTTGCCAGCACGAAGAATAT 59.320 45.455 2.84 0.00 0.00 1.28
86 87 3.127548 CACTTGCCAGCACGAAGAATATT 59.872 43.478 2.84 0.00 0.00 1.28
87 88 3.758554 ACTTGCCAGCACGAAGAATATTT 59.241 39.130 2.84 0.00 0.00 1.40
88 89 4.218417 ACTTGCCAGCACGAAGAATATTTT 59.782 37.500 2.84 0.00 0.00 1.82
89 90 4.782019 TGCCAGCACGAAGAATATTTTT 57.218 36.364 0.00 0.00 0.00 1.94
228 231 1.270518 CCATTAGATCCGAGCCCAGTG 60.271 57.143 0.00 0.00 0.00 3.66
240 243 3.740115 GAGCCCAGTGAAAACTGAACTA 58.260 45.455 7.43 0.00 39.99 2.24
320 324 3.018149 ACAGATCGGACTCCTAGTGTTC 58.982 50.000 0.00 0.00 0.00 3.18
439 443 5.423886 GAGAAAGATTTCGGAACCAGAGAT 58.576 41.667 0.00 0.00 41.92 2.75
474 485 6.774170 TGATGATTCCAATCTAATCCCACAAG 59.226 38.462 1.13 0.00 36.39 3.16
519 530 5.682659 ACGTACCACATCTATCTACAGAGT 58.317 41.667 0.00 0.00 0.00 3.24
574 627 2.612760 CCTTGGATGAGAGGAGGCA 58.387 57.895 0.00 0.00 34.91 4.75
630 683 1.746991 CTTGGGAGGAAAGCGGCTC 60.747 63.158 1.45 0.00 0.00 4.70
662 723 2.460669 GAGGGAGGTTAGGTTTCGGTA 58.539 52.381 0.00 0.00 0.00 4.02
663 724 2.429971 GAGGGAGGTTAGGTTTCGGTAG 59.570 54.545 0.00 0.00 0.00 3.18
664 725 2.182827 GGGAGGTTAGGTTTCGGTAGT 58.817 52.381 0.00 0.00 0.00 2.73
665 726 2.167281 GGGAGGTTAGGTTTCGGTAGTC 59.833 54.545 0.00 0.00 0.00 2.59
666 727 2.159324 GGAGGTTAGGTTTCGGTAGTCG 60.159 54.545 0.00 0.00 40.90 4.18
667 728 1.821136 AGGTTAGGTTTCGGTAGTCGG 59.179 52.381 0.00 0.00 39.77 4.79
668 729 1.546029 GGTTAGGTTTCGGTAGTCGGT 59.454 52.381 0.00 0.00 39.77 4.69
669 730 2.752903 GGTTAGGTTTCGGTAGTCGGTA 59.247 50.000 0.00 0.00 39.77 4.02
681 742 2.005971 AGTCGGTAGCAACGGAAATC 57.994 50.000 0.00 0.00 36.79 2.17
690 751 4.499037 AGCAACGGAAATCAACCTTAAC 57.501 40.909 0.00 0.00 0.00 2.01
939 1002 4.278513 CTCCCCGCCACAAACCCA 62.279 66.667 0.00 0.00 0.00 4.51
940 1003 4.589675 TCCCCGCCACAAACCCAC 62.590 66.667 0.00 0.00 0.00 4.61
944 1007 4.326766 CGCCACAAACCCACGCTG 62.327 66.667 0.00 0.00 0.00 5.18
945 1008 4.645921 GCCACAAACCCACGCTGC 62.646 66.667 0.00 0.00 0.00 5.25
946 1009 4.326766 CCACAAACCCACGCTGCG 62.327 66.667 21.91 21.91 0.00 5.18
1038 1101 4.434938 TCCGACGTCGACTTCGCG 62.435 66.667 37.65 25.13 43.02 5.87
1112 1193 4.244802 CTCGCTCGACTCGCCCTC 62.245 72.222 0.00 0.00 0.00 4.30
1441 1522 1.541379 GCGGTCCAGGTATTTGGTTT 58.459 50.000 0.00 0.00 39.35 3.27
1447 1528 6.117488 CGGTCCAGGTATTTGGTTTAGTTAT 58.883 40.000 0.00 0.00 39.35 1.89
1449 1530 7.769970 CGGTCCAGGTATTTGGTTTAGTTATTA 59.230 37.037 0.00 0.00 39.35 0.98
1450 1531 9.117183 GGTCCAGGTATTTGGTTTAGTTATTAG 57.883 37.037 0.00 0.00 39.35 1.73
1451 1532 8.618677 GTCCAGGTATTTGGTTTAGTTATTAGC 58.381 37.037 0.00 0.00 39.35 3.09
1452 1533 8.330247 TCCAGGTATTTGGTTTAGTTATTAGCA 58.670 33.333 0.00 0.00 39.35 3.49
1490 1578 9.856488 TTTCATACTGAACTACTGAACTGATAC 57.144 33.333 0.00 0.00 35.89 2.24
1500 1588 1.831106 TGAACTGATACATCGGTGCCT 59.169 47.619 4.47 0.00 45.23 4.75
1615 1705 1.064906 AGAGCATTGGACATGACCCTG 60.065 52.381 11.80 10.05 0.00 4.45
1645 1735 0.108945 GCTCCAAATTGGCTGCACTC 60.109 55.000 19.33 0.00 37.47 3.51
1676 1773 5.882557 GGTGACACTGAAGATATTGACCATT 59.117 40.000 5.39 0.00 0.00 3.16
1682 1779 5.591877 ACTGAAGATATTGACCATTTCCTGC 59.408 40.000 0.00 0.00 0.00 4.85
1693 1790 4.648626 TTCCTGCTTGGCTGCGCT 62.649 61.111 9.73 0.00 35.26 5.92
1753 1851 0.317479 GTTATACTCATCGGGCGCCT 59.683 55.000 28.56 6.90 0.00 5.52
1755 1853 1.913778 TATACTCATCGGGCGCCTTA 58.086 50.000 28.56 15.48 0.00 2.69
1847 1945 3.689897 CGACAGTTTCGTCATTCTGAC 57.310 47.619 0.00 0.00 43.24 3.51
1894 1993 1.072331 AGACCTTCAACGATGTGGCTT 59.928 47.619 0.00 0.00 0.00 4.35
1895 1994 1.197721 GACCTTCAACGATGTGGCTTG 59.802 52.381 0.00 0.00 0.00 4.01
1962 2061 2.688666 AGAATGGCTGGGGCGAGA 60.689 61.111 0.00 0.00 39.81 4.04
1992 2092 3.736126 GCTATCTGCTTTGATTTGTGGCC 60.736 47.826 0.00 0.00 38.95 5.36
2169 2269 5.423015 CACATAGGAATGCACAGAACTACT 58.577 41.667 0.00 0.00 36.50 2.57
2176 2276 8.023021 AGGAATGCACAGAACTACTTATCATA 57.977 34.615 0.00 0.00 0.00 2.15
2386 2486 2.680312 TCCCAGCAAGATTCGAAGAG 57.320 50.000 3.35 0.00 38.43 2.85
2455 2555 5.667539 TCAAGTGGAGATAAGAAGGACAG 57.332 43.478 0.00 0.00 0.00 3.51
2507 2607 5.964477 TGAATGTGAAGGGACTCCTATTAGT 59.036 40.000 0.00 0.00 44.07 2.24
2579 2679 2.514803 GCAGGGAAAGGAGCTTTGTTA 58.485 47.619 0.00 0.00 33.49 2.41
2739 2869 7.707035 GTCAGACCGACTATGAAGATTACAAAT 59.293 37.037 0.00 0.00 41.81 2.32
2740 2870 7.921214 TCAGACCGACTATGAAGATTACAAATC 59.079 37.037 0.00 0.00 0.00 2.17
2741 2871 7.923344 CAGACCGACTATGAAGATTACAAATCT 59.077 37.037 0.00 0.00 0.00 2.40
2742 2872 7.923344 AGACCGACTATGAAGATTACAAATCTG 59.077 37.037 3.04 0.00 0.00 2.90
2743 2873 6.986817 ACCGACTATGAAGATTACAAATCTGG 59.013 38.462 3.04 1.12 0.00 3.86
2744 2874 6.425114 CCGACTATGAAGATTACAAATCTGGG 59.575 42.308 3.04 0.00 0.00 4.45
2745 2875 7.210174 CGACTATGAAGATTACAAATCTGGGA 58.790 38.462 3.04 0.00 0.00 4.37
2746 2876 7.710907 CGACTATGAAGATTACAAATCTGGGAA 59.289 37.037 3.04 0.00 0.00 3.97
2747 2877 9.396022 GACTATGAAGATTACAAATCTGGGAAA 57.604 33.333 3.04 0.00 0.00 3.13
2748 2878 9.401058 ACTATGAAGATTACAAATCTGGGAAAG 57.599 33.333 3.04 1.88 0.00 2.62
2749 2879 9.618890 CTATGAAGATTACAAATCTGGGAAAGA 57.381 33.333 3.04 0.00 39.94 2.52
2751 2881 8.284945 TGAAGATTACAAATCTGGGAAAGATG 57.715 34.615 3.04 0.00 45.37 2.90
2752 2882 7.340232 TGAAGATTACAAATCTGGGAAAGATGG 59.660 37.037 3.04 0.00 45.37 3.51
2753 2883 5.595952 AGATTACAAATCTGGGAAAGATGGC 59.404 40.000 1.44 0.00 45.37 4.40
2754 2884 3.463048 ACAAATCTGGGAAAGATGGCT 57.537 42.857 0.00 0.00 45.37 4.75
2755 2885 3.782992 ACAAATCTGGGAAAGATGGCTT 58.217 40.909 0.00 0.00 45.37 4.35
2756 2886 3.512724 ACAAATCTGGGAAAGATGGCTTG 59.487 43.478 0.00 0.00 45.37 4.01
2757 2887 3.463048 AATCTGGGAAAGATGGCTTGT 57.537 42.857 0.00 0.00 45.37 3.16
2758 2888 2.978156 TCTGGGAAAGATGGCTTGTT 57.022 45.000 0.00 0.00 33.79 2.83
2759 2889 3.243359 TCTGGGAAAGATGGCTTGTTT 57.757 42.857 0.00 0.00 33.79 2.83
2760 2890 2.892852 TCTGGGAAAGATGGCTTGTTTG 59.107 45.455 0.07 0.00 33.79 2.93
2761 2891 2.892852 CTGGGAAAGATGGCTTGTTTGA 59.107 45.455 0.07 0.00 33.79 2.69
2762 2892 3.303938 TGGGAAAGATGGCTTGTTTGAA 58.696 40.909 0.07 0.00 33.79 2.69
2763 2893 3.708631 TGGGAAAGATGGCTTGTTTGAAA 59.291 39.130 0.07 0.00 33.79 2.69
2764 2894 4.202243 TGGGAAAGATGGCTTGTTTGAAAG 60.202 41.667 0.07 0.00 33.79 2.62
2765 2895 4.039124 GGGAAAGATGGCTTGTTTGAAAGA 59.961 41.667 0.07 0.00 33.79 2.52
2766 2896 5.453198 GGGAAAGATGGCTTGTTTGAAAGAA 60.453 40.000 0.07 0.00 33.79 2.52
2767 2897 6.048509 GGAAAGATGGCTTGTTTGAAAGAAA 58.951 36.000 0.07 0.00 33.79 2.52
2768 2898 6.538381 GGAAAGATGGCTTGTTTGAAAGAAAA 59.462 34.615 0.07 0.00 33.79 2.29
2791 2921 6.861065 ACACAGTATAAACTCAACAACCAG 57.139 37.500 0.00 0.00 31.97 4.00
2816 2946 5.123027 GGAGGAATCTTCAGTGTTTGATGAC 59.877 44.000 0.00 0.00 41.23 3.06
2851 2981 6.183360 GGTGATAAATCCAAAGAAGCAGGTAC 60.183 42.308 0.00 0.00 0.00 3.34
2853 2983 4.388577 AAATCCAAAGAAGCAGGTACCT 57.611 40.909 9.21 9.21 0.00 3.08
2889 3019 3.302740 GCTGCTCGCATGTCATTAAGTAC 60.303 47.826 0.00 0.00 38.92 2.73
2994 3124 9.103048 GTGTCGTTTTGATGTAACTTTATTGAG 57.897 33.333 0.00 0.00 0.00 3.02
3099 3233 1.410004 AGTTCACGTCCACCTTCAGA 58.590 50.000 0.00 0.00 0.00 3.27
3100 3234 1.068741 AGTTCACGTCCACCTTCAGAC 59.931 52.381 0.00 0.00 0.00 3.51
3343 3477 4.453819 GCTGCTCAAGTAAGTCAAATCTGT 59.546 41.667 0.00 0.00 0.00 3.41
3406 3540 9.230122 TCAAGCTCTGAATTATAAATGTGTGAA 57.770 29.630 0.00 0.00 0.00 3.18
3549 3683 6.206498 CGTCCTTACAGTCGATGATGAAATA 58.794 40.000 0.00 0.00 0.00 1.40
3573 3707 2.032549 CACAAGAACAGGCAAACTCTCG 60.033 50.000 0.00 0.00 0.00 4.04
3578 3712 0.250338 ACAGGCAAACTCTCGGGAAC 60.250 55.000 0.00 0.00 0.00 3.62
3601 3735 4.572389 CCGAAGATGTTAAACCTCCATCTG 59.428 45.833 6.35 0.00 43.32 2.90
3708 3842 6.859420 ACCATTGGTTGCTTTTTCAATAAC 57.141 33.333 1.37 0.00 27.29 1.89
3717 3851 3.554752 GCTTTTTCAATAACCCTGCAGCA 60.555 43.478 8.66 0.00 0.00 4.41
3751 3885 6.406400 CCACATAGTTCTTTCTAGTCTCTGGG 60.406 46.154 0.00 0.00 0.00 4.45
3760 3894 3.461824 TCTAGTCTCTGGGTGTCCTCTA 58.538 50.000 0.00 0.00 0.00 2.43
4049 4183 2.620585 GGCCATAAGTTTCTCCAGATGC 59.379 50.000 0.00 0.00 0.00 3.91
4279 4414 9.015577 CGTGCAAAGTCTTTCTGTTATTAAAAA 57.984 29.630 0.00 0.00 0.00 1.94
4511 4647 7.985184 TGCTAACCTACATGTCTTATAACAAGG 59.015 37.037 0.00 2.39 32.98 3.61
4555 4691 2.827921 AGCCCATGACAACTTGGAATTC 59.172 45.455 0.00 0.00 41.88 2.17
4581 4717 6.058183 CCAGTTTCTATGCTAATAGCCAGTT 58.942 40.000 10.06 0.00 41.51 3.16
4632 4768 7.861372 TGACTGTTTCAACGTTTTAAACTTTCA 59.139 29.630 25.08 22.91 34.84 2.69
4732 4868 3.538591 TCATCTCAGAATGACATGGCAC 58.461 45.455 1.45 0.00 42.56 5.01
4745 4881 4.657952 GGCACGGATAGCCCTTTT 57.342 55.556 0.00 0.00 46.50 2.27
4791 4928 3.192633 GGCCTAACTGTAACACCCAAATG 59.807 47.826 0.00 0.00 0.00 2.32
4833 4970 5.048713 GGTAATGCTGTTCAGTTAAAGCTGT 60.049 40.000 0.00 0.00 37.70 4.40
4838 4975 4.143305 GCTGTTCAGTTAAAGCTGTCTACG 60.143 45.833 0.00 0.00 37.70 3.51
4874 5011 0.912486 ACATGAGTTGCTACCCTCCC 59.088 55.000 0.00 0.00 0.00 4.30
4892 5029 7.013834 ACCCTCCCACACAATATTTTAAAGAA 58.986 34.615 0.00 0.00 0.00 2.52
4918 5055 3.846588 ACATCTCCACACCCTGTTATTCT 59.153 43.478 0.00 0.00 0.00 2.40
4925 5062 3.007940 CACACCCTGTTATTCTGGTCTCA 59.992 47.826 0.00 0.00 33.97 3.27
4933 5070 6.760770 CCTGTTATTCTGGTCTCAAGAGATTC 59.239 42.308 2.72 0.48 39.97 2.52
4966 5103 5.538813 CACCATTAGAGTGCCATACCTACTA 59.461 44.000 0.00 0.00 0.00 1.82
4967 5104 6.211584 CACCATTAGAGTGCCATACCTACTAT 59.788 42.308 0.00 0.00 0.00 2.12
4968 5105 7.396339 CACCATTAGAGTGCCATACCTACTATA 59.604 40.741 0.00 0.00 0.00 1.31
4969 5106 8.123130 ACCATTAGAGTGCCATACCTACTATAT 58.877 37.037 0.00 0.00 0.00 0.86
5000 5137 1.629861 CCCAGGGCCAACATGAAAAAT 59.370 47.619 6.18 0.00 31.04 1.82
5005 5142 5.490159 CAGGGCCAACATGAAAAATAACAT 58.510 37.500 6.18 0.00 31.04 2.71
5006 5143 5.939296 CAGGGCCAACATGAAAAATAACATT 59.061 36.000 6.18 0.00 31.04 2.71
5138 5275 6.705381 TGAGCAGTTTGTCATTAAATTTTGGG 59.295 34.615 0.00 0.00 0.00 4.12
5272 5411 1.620822 ACCAGGTTGAGCATTTGGAC 58.379 50.000 0.00 0.00 33.19 4.02
5325 5464 7.342284 TGAAAAGGAACAAATAAAGGTACCACA 59.658 33.333 15.94 0.00 0.00 4.17
5328 5467 4.756135 GGAACAAATAAAGGTACCACACGA 59.244 41.667 15.94 0.00 0.00 4.35
5332 5471 7.982761 ACAAATAAAGGTACCACACGAAATA 57.017 32.000 15.94 0.00 0.00 1.40
5333 5472 8.036273 ACAAATAAAGGTACCACACGAAATAG 57.964 34.615 15.94 0.00 0.00 1.73
5334 5473 7.120138 ACAAATAAAGGTACCACACGAAATAGG 59.880 37.037 15.94 0.00 0.00 2.57
5335 5474 4.895668 AAAGGTACCACACGAAATAGGA 57.104 40.909 15.94 0.00 0.00 2.94
5336 5475 4.895668 AAGGTACCACACGAAATAGGAA 57.104 40.909 15.94 0.00 0.00 3.36
5337 5476 5.431179 AAGGTACCACACGAAATAGGAAT 57.569 39.130 15.94 0.00 0.00 3.01
5338 5477 5.019785 AGGTACCACACGAAATAGGAATC 57.980 43.478 15.94 0.00 0.00 2.52
5536 5682 7.967890 TTGCATGTAATCTCATAGTGTATGG 57.032 36.000 0.00 0.00 36.81 2.74
5568 5714 1.586028 CCCAGGGCAATGTTTCACG 59.414 57.895 0.00 0.00 0.00 4.35
5612 5758 1.272769 ACTCGTCTTCTGCACTAACCC 59.727 52.381 0.00 0.00 0.00 4.11
5663 5810 6.480763 TCCTACTTTATTGGCACATTGAAGA 58.519 36.000 0.00 0.00 37.45 2.87
6143 6294 3.010420 GGGTGAAACTCTATGCTTGTCC 58.990 50.000 0.00 0.00 31.43 4.02
6148 6299 4.631377 TGAAACTCTATGCTTGTCCGATTG 59.369 41.667 0.00 0.00 0.00 2.67
6182 6494 8.491134 TGATAGCTAGTTTGGTATGTGGTTTAT 58.509 33.333 0.00 0.00 31.71 1.40
6245 6557 9.352191 ACTTATGTCAGGGTACTAGTTGTATAG 57.648 37.037 0.00 0.00 33.23 1.31
6248 6560 5.593095 TGTCAGGGTACTAGTTGTATAGCAG 59.407 44.000 0.00 0.00 33.23 4.24
6286 6598 3.093814 TGTGAAACTCTATACCGGCTCA 58.906 45.455 0.00 0.00 38.04 4.26
6290 6602 5.006746 GTGAAACTCTATACCGGCTCAATTG 59.993 44.000 0.00 0.00 0.00 2.32
6291 6603 5.105106 TGAAACTCTATACCGGCTCAATTGA 60.105 40.000 8.12 8.12 0.00 2.57
6297 6609 2.871096 ACCGGCTCAATTGAAGGTTA 57.129 45.000 18.68 0.00 0.00 2.85
6317 6687 5.932883 GGTTAGGATAGCTAGTTTGGTATGC 59.067 44.000 0.00 0.00 38.45 3.14
6321 6691 2.311124 AGCTAGTTTGGTATGCCGTC 57.689 50.000 0.00 0.00 37.67 4.79
6323 6693 1.933853 GCTAGTTTGGTATGCCGTCTG 59.066 52.381 0.00 0.00 37.67 3.51
6342 6712 1.818060 TGCAAGCAAAACTGACAGTGT 59.182 42.857 9.33 0.00 0.00 3.55
6350 6720 2.256117 AACTGACAGTGTAGGGCAAC 57.744 50.000 9.33 0.00 0.00 4.17
6395 6766 3.190535 CACTGCCGTTGCCTTTTACTTAT 59.809 43.478 0.00 0.00 36.33 1.73
6447 6818 6.127225 TGTTGGTGGTTTTCAAAATCATCTCA 60.127 34.615 7.89 4.72 0.00 3.27
6450 6821 7.507829 TGGTGGTTTTCAAAATCATCTCAAAT 58.492 30.769 7.89 0.00 0.00 2.32
6451 6822 7.441760 TGGTGGTTTTCAAAATCATCTCAAATG 59.558 33.333 7.89 0.00 0.00 2.32
6453 6824 6.145858 TGGTTTTCAAAATCATCTCAAATGCG 59.854 34.615 0.00 0.00 0.00 4.73
6454 6825 5.766702 TTTCAAAATCATCTCAAATGCGC 57.233 34.783 0.00 0.00 0.00 6.09
6455 6826 4.437772 TCAAAATCATCTCAAATGCGCA 57.562 36.364 14.96 14.96 0.00 6.09
6457 6828 6.134040 TCAAAATCATCTCAAATGCGCATA 57.866 33.333 25.61 7.96 0.00 3.14
6458 6829 6.741109 TCAAAATCATCTCAAATGCGCATAT 58.259 32.000 25.61 10.30 0.00 1.78
6459 6830 6.859508 TCAAAATCATCTCAAATGCGCATATC 59.140 34.615 25.61 0.00 0.00 1.63
6460 6831 5.952526 AATCATCTCAAATGCGCATATCA 57.047 34.783 25.61 9.10 0.00 2.15
6461 6832 5.547181 ATCATCTCAAATGCGCATATCAG 57.453 39.130 25.61 18.34 0.00 2.90
6462 6833 4.634199 TCATCTCAAATGCGCATATCAGA 58.366 39.130 25.61 22.72 0.00 3.27
6463 6834 4.689345 TCATCTCAAATGCGCATATCAGAG 59.311 41.667 25.61 24.50 0.00 3.35
6464 6835 3.396560 TCTCAAATGCGCATATCAGAGG 58.603 45.455 25.61 10.35 0.00 3.69
6465 6836 1.875514 TCAAATGCGCATATCAGAGGC 59.124 47.619 25.61 0.00 0.00 4.70
6466 6837 1.878088 CAAATGCGCATATCAGAGGCT 59.122 47.619 25.61 0.57 30.73 4.58
6467 6838 2.267174 AATGCGCATATCAGAGGCTT 57.733 45.000 25.61 0.72 30.73 4.35
6468 6839 2.267174 ATGCGCATATCAGAGGCTTT 57.733 45.000 24.02 0.00 30.73 3.51
6469 6840 2.908688 TGCGCATATCAGAGGCTTTA 57.091 45.000 5.66 0.00 30.73 1.85
6470 6841 3.192541 TGCGCATATCAGAGGCTTTAA 57.807 42.857 5.66 0.00 30.73 1.52
6471 6842 2.872245 TGCGCATATCAGAGGCTTTAAC 59.128 45.455 5.66 0.00 30.73 2.01
6472 6843 3.134458 GCGCATATCAGAGGCTTTAACT 58.866 45.455 0.30 0.00 30.73 2.24
6473 6844 3.561725 GCGCATATCAGAGGCTTTAACTT 59.438 43.478 0.30 0.00 30.73 2.66
6474 6845 4.553547 GCGCATATCAGAGGCTTTAACTTG 60.554 45.833 0.30 0.00 30.73 3.16
6475 6846 4.553547 CGCATATCAGAGGCTTTAACTTGC 60.554 45.833 0.00 0.00 30.73 4.01
6476 6847 4.578105 GCATATCAGAGGCTTTAACTTGCT 59.422 41.667 0.00 0.00 0.00 3.91
6477 6848 5.760253 GCATATCAGAGGCTTTAACTTGCTA 59.240 40.000 0.00 0.00 0.00 3.49
6478 6849 6.260936 GCATATCAGAGGCTTTAACTTGCTAA 59.739 38.462 0.00 0.00 0.00 3.09
6479 6850 7.634522 CATATCAGAGGCTTTAACTTGCTAAC 58.365 38.462 0.00 0.00 0.00 2.34
6480 6851 4.324267 TCAGAGGCTTTAACTTGCTAACC 58.676 43.478 0.00 0.00 0.00 2.85
6493 6864 9.823647 TTAACTTGCTAACCAAATCATTTGAAA 57.176 25.926 11.98 0.00 43.26 2.69
6577 7003 0.955428 GGCTGCGACCATTTCTCACA 60.955 55.000 0.00 0.00 0.00 3.58
6591 7017 6.805271 CCATTTCTCACACTGATTCATTGTTC 59.195 38.462 6.90 0.00 0.00 3.18
6602 7028 9.472361 CACTGATTCATTGTTCTGAAGAAAAAT 57.528 29.630 3.98 7.34 41.37 1.82
6611 7037 7.734538 TGTTCTGAAGAAAAATTGTTTCGAC 57.265 32.000 0.00 0.00 35.58 4.20
6676 7103 3.382546 AGGCATGGAAGGAATTCAATTCG 59.617 43.478 7.93 0.79 40.17 3.34
6698 7125 4.994852 CGGTCACTTTTGGATAGTCTTTCA 59.005 41.667 0.00 0.00 0.00 2.69
6729 7157 3.653344 TGTTCAGCATGTCTACACTGTC 58.347 45.455 0.00 0.00 37.40 3.51
6732 7160 2.893489 TCAGCATGTCTACACTGTCTGT 59.107 45.455 0.00 0.00 37.40 3.41
6733 7161 3.057245 TCAGCATGTCTACACTGTCTGTC 60.057 47.826 0.00 0.00 37.40 3.51
6734 7162 2.232452 AGCATGTCTACACTGTCTGTCC 59.768 50.000 0.00 0.00 33.91 4.02
6736 7164 3.674682 GCATGTCTACACTGTCTGTCCTC 60.675 52.174 0.00 0.00 33.91 3.71
6751 7179 0.109532 TCCTCGTGCCAAAATGGACA 59.890 50.000 0.00 0.00 40.96 4.02
6754 7182 0.887247 TCGTGCCAAAATGGACATGG 59.113 50.000 0.00 0.00 40.96 3.66
6758 7186 3.243168 CGTGCCAAAATGGACATGGATAG 60.243 47.826 0.00 0.00 40.96 2.08
6826 7254 1.883021 GGCAAACTGCGCCTTATGT 59.117 52.632 4.18 0.00 46.21 2.29
6838 7266 3.498082 CGCCTTATGTACTTGTTTTGGC 58.502 45.455 0.00 0.00 35.02 4.52
6849 7277 3.553917 ACTTGTTTTGGCGTAAATGCAAC 59.446 39.130 0.00 0.00 36.28 4.17
6851 7279 3.119291 TGTTTTGGCGTAAATGCAACTG 58.881 40.909 0.00 0.00 36.28 3.16
6852 7280 3.120041 GTTTTGGCGTAAATGCAACTGT 58.880 40.909 0.00 0.00 36.28 3.55
6853 7281 2.697431 TTGGCGTAAATGCAACTGTC 57.303 45.000 0.00 0.00 36.28 3.51
6854 7282 1.598882 TGGCGTAAATGCAACTGTCA 58.401 45.000 0.00 0.00 36.28 3.58
6855 7283 1.950216 TGGCGTAAATGCAACTGTCAA 59.050 42.857 0.00 0.00 36.28 3.18
6856 7284 2.556189 TGGCGTAAATGCAACTGTCAAT 59.444 40.909 0.00 0.00 36.28 2.57
6857 7285 3.005261 TGGCGTAAATGCAACTGTCAATT 59.995 39.130 0.00 0.00 36.28 2.32
6858 7286 3.364621 GGCGTAAATGCAACTGTCAATTG 59.635 43.478 0.00 0.00 36.28 2.32
6859 7287 3.980775 GCGTAAATGCAACTGTCAATTGT 59.019 39.130 5.13 0.00 34.15 2.71
6860 7288 5.150683 GCGTAAATGCAACTGTCAATTGTA 58.849 37.500 5.13 0.00 34.15 2.41
6961 7400 6.887626 TGTTGGGAAACATAGTAGAAAACC 57.112 37.500 0.00 0.00 0.00 3.27
7018 7457 8.415553 CAATATGAAGATGCATAAAGGGTTGAA 58.584 33.333 0.00 0.00 34.67 2.69
7073 7512 3.009301 AGAAGAACGTGTCGGTGTAAG 57.991 47.619 0.00 0.00 0.00 2.34
7154 7593 1.603678 CCTCGAACCGAAGACCGAAAA 60.604 52.381 0.00 0.00 41.76 2.29
7157 7596 1.593933 CGAACCGAAGACCGAAAACAA 59.406 47.619 0.00 0.00 41.76 2.83
7245 7684 2.640184 TCGTCGCCAGAGAATTAGAGA 58.360 47.619 0.00 0.00 0.00 3.10
7256 7695 7.397192 GCCAGAGAATTAGAGAGAGGAGATTAT 59.603 40.741 0.00 0.00 0.00 1.28
7264 7703 9.836179 ATTAGAGAGAGGAGATTATAACCACAT 57.164 33.333 0.00 0.00 0.00 3.21
7331 7771 9.537852 TCTAATTAGTCAACTAGGACCAACTAA 57.462 33.333 12.19 1.84 38.59 2.24
7377 7824 5.441500 TCCAAAAACTTGTGTGTCCATAGA 58.558 37.500 0.00 0.00 0.00 1.98
7459 7920 2.526888 AGTCCCTCTACATTGGTCGA 57.473 50.000 0.00 0.00 0.00 4.20
7471 7933 2.284405 GGTCGACCAAGAGGGGGA 60.284 66.667 29.75 0.00 42.91 4.81
7475 7944 2.060980 CGACCAAGAGGGGGAGGAG 61.061 68.421 0.00 0.00 42.91 3.69
7476 7945 1.081277 GACCAAGAGGGGGAGGAGT 59.919 63.158 0.00 0.00 42.91 3.85
7492 7961 1.910580 GAGTCCCCTCCAATTCGGCA 61.911 60.000 0.00 0.00 33.14 5.69
7542 8015 2.660064 CGCCACCTCTACTTGGGCT 61.660 63.158 0.00 0.00 42.43 5.19
7581 8054 3.053619 CCTTCCACCACTAGGCCTTTTAT 60.054 47.826 12.58 0.00 39.06 1.40
7582 8055 4.165372 CCTTCCACCACTAGGCCTTTTATA 59.835 45.833 12.58 0.00 39.06 0.98
7583 8056 5.163088 CCTTCCACCACTAGGCCTTTTATAT 60.163 44.000 12.58 0.00 39.06 0.86
7584 8057 6.043938 CCTTCCACCACTAGGCCTTTTATATA 59.956 42.308 12.58 0.00 39.06 0.86
7585 8058 7.257053 CCTTCCACCACTAGGCCTTTTATATAT 60.257 40.741 12.58 0.00 39.06 0.86
7586 8059 8.745149 TTCCACCACTAGGCCTTTTATATATA 57.255 34.615 12.58 0.00 39.06 0.86
7587 8060 8.745149 TCCACCACTAGGCCTTTTATATATAA 57.255 34.615 12.58 0.81 39.06 0.98
7588 8061 9.346515 TCCACCACTAGGCCTTTTATATATAAT 57.653 33.333 12.58 0.00 39.06 1.28
7589 8062 9.975218 CCACCACTAGGCCTTTTATATATAATT 57.025 33.333 12.58 0.00 39.06 1.40
7624 8097 6.748333 GGTTTTATACCCTTAGTTGTGTCC 57.252 41.667 0.00 0.00 41.43 4.02
7625 8098 5.649395 GGTTTTATACCCTTAGTTGTGTCCC 59.351 44.000 0.00 0.00 41.43 4.46
7626 8099 5.440207 TTTATACCCTTAGTTGTGTCCCC 57.560 43.478 0.00 0.00 0.00 4.81
7627 8100 1.660242 TACCCTTAGTTGTGTCCCCC 58.340 55.000 0.00 0.00 0.00 5.40
7628 8101 0.104090 ACCCTTAGTTGTGTCCCCCT 60.104 55.000 0.00 0.00 0.00 4.79
7629 8102 0.618981 CCCTTAGTTGTGTCCCCCTC 59.381 60.000 0.00 0.00 0.00 4.30
7630 8103 0.249398 CCTTAGTTGTGTCCCCCTCG 59.751 60.000 0.00 0.00 0.00 4.63
7631 8104 0.974383 CTTAGTTGTGTCCCCCTCGT 59.026 55.000 0.00 0.00 0.00 4.18
7632 8105 0.971386 TTAGTTGTGTCCCCCTCGTC 59.029 55.000 0.00 0.00 0.00 4.20
7633 8106 0.178955 TAGTTGTGTCCCCCTCGTCA 60.179 55.000 0.00 0.00 0.00 4.35
7634 8107 1.004918 GTTGTGTCCCCCTCGTCAG 60.005 63.158 0.00 0.00 0.00 3.51
7635 8108 2.214216 TTGTGTCCCCCTCGTCAGG 61.214 63.158 0.00 0.00 39.98 3.86
7636 8109 2.283676 GTGTCCCCCTCGTCAGGA 60.284 66.667 0.00 0.00 43.65 3.86
7637 8110 1.686110 GTGTCCCCCTCGTCAGGAT 60.686 63.158 0.00 0.00 43.65 3.24
7638 8111 1.080354 TGTCCCCCTCGTCAGGATT 59.920 57.895 0.00 0.00 43.65 3.01
7639 8112 1.264749 TGTCCCCCTCGTCAGGATTG 61.265 60.000 0.00 0.00 43.65 2.67
7640 8113 2.190578 CCCCCTCGTCAGGATTGC 59.809 66.667 0.00 0.00 43.65 3.56
7641 8114 2.190578 CCCCTCGTCAGGATTGCC 59.809 66.667 0.00 0.00 43.65 4.52
7642 8115 2.190578 CCCTCGTCAGGATTGCCC 59.809 66.667 0.00 0.00 43.65 5.36
7643 8116 2.190578 CCTCGTCAGGATTGCCCC 59.809 66.667 0.00 0.00 43.65 5.80
7644 8117 2.370445 CCTCGTCAGGATTGCCCCT 61.370 63.158 0.00 0.00 43.65 4.79
7645 8118 1.048724 CCTCGTCAGGATTGCCCCTA 61.049 60.000 0.00 0.00 43.65 3.53
7646 8119 0.390860 CTCGTCAGGATTGCCCCTAG 59.609 60.000 0.00 0.00 34.07 3.02
7647 8120 0.325296 TCGTCAGGATTGCCCCTAGT 60.325 55.000 0.00 0.00 34.07 2.57
7648 8121 0.541863 CGTCAGGATTGCCCCTAGTT 59.458 55.000 0.00 0.00 34.07 2.24
7649 8122 1.065418 CGTCAGGATTGCCCCTAGTTT 60.065 52.381 0.00 0.00 34.07 2.66
7650 8123 2.644676 GTCAGGATTGCCCCTAGTTTC 58.355 52.381 0.00 0.00 34.07 2.78
7651 8124 2.239907 GTCAGGATTGCCCCTAGTTTCT 59.760 50.000 0.00 0.00 34.07 2.52
7652 8125 2.239654 TCAGGATTGCCCCTAGTTTCTG 59.760 50.000 0.00 0.00 34.07 3.02
7653 8126 2.239654 CAGGATTGCCCCTAGTTTCTGA 59.760 50.000 0.00 0.00 34.07 3.27
7654 8127 2.919602 AGGATTGCCCCTAGTTTCTGAA 59.080 45.455 0.00 0.00 34.07 3.02
7655 8128 3.333680 AGGATTGCCCCTAGTTTCTGAAA 59.666 43.478 0.00 0.00 34.07 2.69
7656 8129 4.086457 GGATTGCCCCTAGTTTCTGAAAA 58.914 43.478 4.09 0.00 0.00 2.29
7657 8130 4.082190 GGATTGCCCCTAGTTTCTGAAAAC 60.082 45.833 4.09 0.03 44.24 2.43
7658 8131 3.586470 TGCCCCTAGTTTCTGAAAACA 57.414 42.857 4.09 0.00 45.94 2.83
7659 8132 3.219281 TGCCCCTAGTTTCTGAAAACAC 58.781 45.455 4.09 0.00 45.94 3.32
7660 8133 2.225727 GCCCCTAGTTTCTGAAAACACG 59.774 50.000 4.09 0.00 45.94 4.49
7661 8134 3.473625 CCCCTAGTTTCTGAAAACACGT 58.526 45.455 4.09 0.00 45.94 4.49
7662 8135 3.250040 CCCCTAGTTTCTGAAAACACGTG 59.750 47.826 15.48 15.48 45.94 4.49
7663 8136 3.303791 CCCTAGTTTCTGAAAACACGTGC 60.304 47.826 17.22 0.00 45.94 5.34
7664 8137 3.560068 CCTAGTTTCTGAAAACACGTGCT 59.440 43.478 17.22 0.00 45.94 4.40
7665 8138 3.675467 AGTTTCTGAAAACACGTGCTC 57.325 42.857 17.22 10.61 45.94 4.26
7666 8139 3.270877 AGTTTCTGAAAACACGTGCTCT 58.729 40.909 17.22 0.00 45.94 4.09
7667 8140 3.689649 AGTTTCTGAAAACACGTGCTCTT 59.310 39.130 17.22 6.25 45.94 2.85
7668 8141 3.673746 TTCTGAAAACACGTGCTCTTG 57.326 42.857 17.22 7.60 0.00 3.02
7669 8142 1.330521 TCTGAAAACACGTGCTCTTGC 59.669 47.619 17.22 6.06 40.20 4.01
7670 8143 0.380378 TGAAAACACGTGCTCTTGCC 59.620 50.000 17.22 3.84 38.71 4.52
7671 8144 0.317854 GAAAACACGTGCTCTTGCCC 60.318 55.000 17.22 0.00 38.71 5.36
7672 8145 1.034838 AAAACACGTGCTCTTGCCCA 61.035 50.000 17.22 0.00 38.71 5.36
7673 8146 1.034838 AAACACGTGCTCTTGCCCAA 61.035 50.000 17.22 0.00 38.71 4.12
7674 8147 1.724582 AACACGTGCTCTTGCCCAAC 61.725 55.000 17.22 0.00 38.71 3.77
7675 8148 2.594592 ACGTGCTCTTGCCCAACC 60.595 61.111 0.00 0.00 38.71 3.77
7676 8149 3.365265 CGTGCTCTTGCCCAACCC 61.365 66.667 0.00 0.00 38.71 4.11
7677 8150 2.203480 GTGCTCTTGCCCAACCCA 60.203 61.111 0.00 0.00 38.71 4.51
7678 8151 2.203480 TGCTCTTGCCCAACCCAC 60.203 61.111 0.00 0.00 38.71 4.61
7679 8152 2.116125 GCTCTTGCCCAACCCACT 59.884 61.111 0.00 0.00 0.00 4.00
7680 8153 1.531602 GCTCTTGCCCAACCCACTT 60.532 57.895 0.00 0.00 0.00 3.16
7681 8154 1.115326 GCTCTTGCCCAACCCACTTT 61.115 55.000 0.00 0.00 0.00 2.66
7682 8155 0.675633 CTCTTGCCCAACCCACTTTG 59.324 55.000 0.00 0.00 0.00 2.77
7683 8156 0.758685 TCTTGCCCAACCCACTTTGG 60.759 55.000 0.00 0.00 45.11 3.28
7684 8157 2.381838 CTTGCCCAACCCACTTTGGC 62.382 60.000 0.00 0.00 44.29 4.52
7685 8158 3.989787 GCCCAACCCACTTTGGCG 61.990 66.667 0.00 0.00 44.29 5.69
7686 8159 2.520741 CCCAACCCACTTTGGCGT 60.521 61.111 0.00 0.00 44.29 5.68
7687 8160 2.561037 CCCAACCCACTTTGGCGTC 61.561 63.158 0.00 0.00 44.29 5.19
7688 8161 1.528309 CCAACCCACTTTGGCGTCT 60.528 57.895 0.00 0.00 39.78 4.18
7689 8162 1.106944 CCAACCCACTTTGGCGTCTT 61.107 55.000 0.00 0.00 39.78 3.01
7690 8163 0.030638 CAACCCACTTTGGCGTCTTG 59.969 55.000 0.00 0.00 35.79 3.02
7691 8164 0.395173 AACCCACTTTGGCGTCTTGT 60.395 50.000 0.00 0.00 35.79 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 0.036105 TCGTGCTGGCAAGTGATGAT 60.036 50.000 8.18 0.00 0.00 2.45
202 203 0.035458 CTCGGATCTAATGGGGGCAC 59.965 60.000 0.00 0.00 0.00 5.01
240 243 5.047660 GGCTCATATTCATCCTCTTAGACGT 60.048 44.000 0.00 0.00 0.00 4.34
293 296 6.154706 ACACTAGGAGTCCGATCTGTTAATTT 59.845 38.462 2.76 0.00 0.00 1.82
294 297 5.657302 ACACTAGGAGTCCGATCTGTTAATT 59.343 40.000 2.76 0.00 0.00 1.40
295 298 5.202004 ACACTAGGAGTCCGATCTGTTAAT 58.798 41.667 2.76 0.00 0.00 1.40
296 299 4.597004 ACACTAGGAGTCCGATCTGTTAA 58.403 43.478 2.76 0.00 0.00 2.01
458 465 7.885297 TGAGTTTTTCTTGTGGGATTAGATTG 58.115 34.615 0.00 0.00 0.00 2.67
474 485 4.273005 TCGTGTTGCTTCTGAGTTTTTC 57.727 40.909 0.00 0.00 0.00 2.29
519 530 1.153901 CGCTTCCGCCTCGTTTCTA 60.154 57.895 0.00 0.00 0.00 2.10
560 613 2.146061 CCCCTGCCTCCTCTCATCC 61.146 68.421 0.00 0.00 0.00 3.51
610 663 2.034066 CCGCTTTCCTCCCAAGCA 59.966 61.111 5.56 0.00 46.01 3.91
630 683 4.412060 AACCTCCCTCCTCCTCTATATG 57.588 50.000 0.00 0.00 0.00 1.78
662 723 1.274167 TGATTTCCGTTGCTACCGACT 59.726 47.619 0.00 0.00 0.00 4.18
663 724 1.717194 TGATTTCCGTTGCTACCGAC 58.283 50.000 0.00 0.00 0.00 4.79
664 725 2.070783 GTTGATTTCCGTTGCTACCGA 58.929 47.619 0.00 0.00 0.00 4.69
665 726 1.129811 GGTTGATTTCCGTTGCTACCG 59.870 52.381 0.00 0.00 0.00 4.02
666 727 2.433436 AGGTTGATTTCCGTTGCTACC 58.567 47.619 0.00 0.00 0.00 3.18
667 728 5.049267 TGTTAAGGTTGATTTCCGTTGCTAC 60.049 40.000 0.00 0.00 0.00 3.58
668 729 5.064558 TGTTAAGGTTGATTTCCGTTGCTA 58.935 37.500 0.00 0.00 0.00 3.49
669 730 3.886505 TGTTAAGGTTGATTTCCGTTGCT 59.113 39.130 0.00 0.00 0.00 3.91
681 742 1.472480 CGAAGGCCCATGTTAAGGTTG 59.528 52.381 0.00 0.00 0.00 3.77
796 859 1.421485 CGCCTGTGAGTGATTTCGC 59.579 57.895 0.00 0.00 0.00 4.70
797 860 1.970917 GCCGCCTGTGAGTGATTTCG 61.971 60.000 0.00 0.00 0.00 3.46
798 861 1.648467 GGCCGCCTGTGAGTGATTTC 61.648 60.000 0.71 0.00 0.00 2.17
799 862 1.675641 GGCCGCCTGTGAGTGATTT 60.676 57.895 0.71 0.00 0.00 2.17
800 863 2.045926 GGCCGCCTGTGAGTGATT 60.046 61.111 0.71 0.00 0.00 2.57
801 864 4.457496 CGGCCGCCTGTGAGTGAT 62.457 66.667 14.67 0.00 0.00 3.06
1451 1532 4.576053 TCAGTATGAAAATCCCGCAGAATG 59.424 41.667 0.00 0.00 45.97 2.67
1452 1533 4.780815 TCAGTATGAAAATCCCGCAGAAT 58.219 39.130 0.00 0.00 45.97 2.40
1490 1578 2.223340 GCAAGAACAATAGGCACCGATG 60.223 50.000 0.00 0.00 0.00 3.84
1500 1588 9.639601 CAGTATCTATAATCGGCAAGAACAATA 57.360 33.333 0.00 0.00 0.00 1.90
1645 1735 2.930950 TCTTCAGTGTCACCCCAAAAG 58.069 47.619 0.00 0.00 0.00 2.27
1693 1790 6.433847 AACGACCATATAATTCCCTGATCA 57.566 37.500 0.00 0.00 0.00 2.92
1753 1851 4.407621 TCCTTGAACACTGAGTGAAGGTAA 59.592 41.667 23.02 9.14 39.79 2.85
1755 1853 2.771943 TCCTTGAACACTGAGTGAAGGT 59.228 45.455 23.02 6.91 39.79 3.50
1847 1945 6.480524 TGTTTCTTTCCTTACATCATGACG 57.519 37.500 0.00 0.00 0.00 4.35
1855 1954 8.990163 AAGGTCTTATTGTTTCTTTCCTTACA 57.010 30.769 0.00 0.00 32.11 2.41
1939 2038 0.407139 GCCCCAGCCATTCTCCATAT 59.593 55.000 0.00 0.00 0.00 1.78
1947 2046 3.801997 CCTCTCGCCCCAGCCATT 61.802 66.667 0.00 0.00 34.57 3.16
1949 2048 4.804420 ATCCTCTCGCCCCAGCCA 62.804 66.667 0.00 0.00 34.57 4.75
1992 2092 9.693157 CAAAAAGAAAAGAAAAACTGCACTATG 57.307 29.630 0.00 0.00 0.00 2.23
2386 2486 0.181350 ATGCCACGAGAAGGGATTCC 59.819 55.000 0.00 0.00 32.85 3.01
2396 2496 0.891373 AGGGATATCGATGCCACGAG 59.109 55.000 17.55 0.00 45.91 4.18
2455 2555 6.256757 GTCCATAGAGTTAACATGTTGAGAGC 59.743 42.308 21.42 3.48 0.00 4.09
2739 2869 2.892852 CAAACAAGCCATCTTTCCCAGA 59.107 45.455 0.00 0.00 35.33 3.86
2740 2870 2.892852 TCAAACAAGCCATCTTTCCCAG 59.107 45.455 0.00 0.00 0.00 4.45
2741 2871 2.956132 TCAAACAAGCCATCTTTCCCA 58.044 42.857 0.00 0.00 0.00 4.37
2742 2872 4.039124 TCTTTCAAACAAGCCATCTTTCCC 59.961 41.667 0.00 0.00 0.00 3.97
2743 2873 5.200368 TCTTTCAAACAAGCCATCTTTCC 57.800 39.130 0.00 0.00 0.00 3.13
2744 2874 7.064490 TGTTTTCTTTCAAACAAGCCATCTTTC 59.936 33.333 0.00 0.00 42.42 2.62
2745 2875 6.878389 TGTTTTCTTTCAAACAAGCCATCTTT 59.122 30.769 0.00 0.00 42.42 2.52
2746 2876 6.313658 GTGTTTTCTTTCAAACAAGCCATCTT 59.686 34.615 0.69 0.00 45.88 2.40
2747 2877 5.812127 GTGTTTTCTTTCAAACAAGCCATCT 59.188 36.000 0.69 0.00 45.88 2.90
2748 2878 5.580297 TGTGTTTTCTTTCAAACAAGCCATC 59.420 36.000 0.69 0.00 45.88 3.51
2749 2879 5.486526 TGTGTTTTCTTTCAAACAAGCCAT 58.513 33.333 0.69 0.00 45.88 4.40
2750 2880 4.887748 TGTGTTTTCTTTCAAACAAGCCA 58.112 34.783 0.69 0.00 45.88 4.75
2751 2881 4.929211 ACTGTGTTTTCTTTCAAACAAGCC 59.071 37.500 0.69 0.00 45.88 4.35
2752 2882 7.755582 ATACTGTGTTTTCTTTCAAACAAGC 57.244 32.000 0.69 0.00 45.88 4.01
2759 2889 9.997482 GTTGAGTTTATACTGTGTTTTCTTTCA 57.003 29.630 0.00 0.00 33.84 2.69
2760 2890 9.997482 TGTTGAGTTTATACTGTGTTTTCTTTC 57.003 29.630 0.00 0.00 33.84 2.62
2762 2892 9.783256 GTTGTTGAGTTTATACTGTGTTTTCTT 57.217 29.630 0.00 0.00 33.84 2.52
2763 2893 8.403236 GGTTGTTGAGTTTATACTGTGTTTTCT 58.597 33.333 0.00 0.00 33.84 2.52
2764 2894 8.185505 TGGTTGTTGAGTTTATACTGTGTTTTC 58.814 33.333 0.00 0.00 33.84 2.29
2765 2895 8.057536 TGGTTGTTGAGTTTATACTGTGTTTT 57.942 30.769 0.00 0.00 33.84 2.43
2766 2896 7.201785 CCTGGTTGTTGAGTTTATACTGTGTTT 60.202 37.037 0.00 0.00 33.84 2.83
2767 2897 6.262273 CCTGGTTGTTGAGTTTATACTGTGTT 59.738 38.462 0.00 0.00 33.84 3.32
2768 2898 5.763204 CCTGGTTGTTGAGTTTATACTGTGT 59.237 40.000 0.00 0.00 33.84 3.72
2791 2921 4.021102 TCAAACACTGAAGATTCCTCCC 57.979 45.455 0.00 0.00 0.00 4.30
2851 2981 5.022021 CGAGCAGCGTTCTAAATAAAAAGG 58.978 41.667 0.00 0.00 34.64 3.11
2853 2983 4.399978 GCGAGCAGCGTTCTAAATAAAAA 58.600 39.130 0.00 0.00 43.41 1.94
2889 3019 5.881447 AGTTACATAAGCTGACAGACTACG 58.119 41.667 6.65 0.00 0.00 3.51
2960 3090 4.092816 ACATCAAAACGACACGAAAACAC 58.907 39.130 0.00 0.00 0.00 3.32
2994 3124 0.684153 AGAGAGAGAGAGCACCAGCC 60.684 60.000 0.00 0.00 43.56 4.85
3048 3182 1.133976 GGCTCCCTGCTGATACATTGT 60.134 52.381 0.00 0.00 42.39 2.71
3100 3234 1.986378 CTGCTACCACGACTTTTCTCG 59.014 52.381 0.00 0.00 39.68 4.04
3130 3264 7.121759 TCAGGACTGAAGATTTTGATGAAATCC 59.878 37.037 0.00 0.00 42.96 3.01
3259 3393 5.533154 CGTCTTAATATCCTCACCAGTCTCT 59.467 44.000 0.00 0.00 0.00 3.10
3343 3477 6.575244 AAGTATCCAGGAAATATGACCACA 57.425 37.500 0.00 0.00 0.00 4.17
3482 3616 9.307121 CTTGTACGTCTCTTATCTGAATGAAAT 57.693 33.333 0.00 0.00 0.00 2.17
3495 3629 3.700038 CCATCCTACCTTGTACGTCTCTT 59.300 47.826 0.00 0.00 0.00 2.85
3549 3683 2.945668 GAGTTTGCCTGTTCTTGTGAGT 59.054 45.455 0.00 0.00 0.00 3.41
3573 3707 3.682696 AGGTTTAACATCTTCGGTTCCC 58.317 45.455 0.00 0.00 0.00 3.97
3578 3712 4.572389 CAGATGGAGGTTTAACATCTTCGG 59.428 45.833 9.59 4.81 46.64 4.30
3579 3713 4.034510 GCAGATGGAGGTTTAACATCTTCG 59.965 45.833 9.59 5.63 46.64 3.79
3696 3830 3.989817 GTGCTGCAGGGTTATTGAAAAAG 59.010 43.478 17.12 0.00 0.00 2.27
3708 3842 1.035139 GGGATTTATGTGCTGCAGGG 58.965 55.000 17.12 0.00 0.00 4.45
3717 3851 9.838339 CTAGAAAGAACTATGTGGGATTTATGT 57.162 33.333 0.00 0.00 0.00 2.29
4004 4138 6.294286 CCAAACATGAATAAACCACTTACGGT 60.294 38.462 0.00 0.00 42.71 4.83
4005 4139 6.090129 CCAAACATGAATAAACCACTTACGG 58.910 40.000 0.00 0.00 0.00 4.02
4006 4140 5.571357 GCCAAACATGAATAAACCACTTACG 59.429 40.000 0.00 0.00 0.00 3.18
4007 4141 5.867174 GGCCAAACATGAATAAACCACTTAC 59.133 40.000 0.00 0.00 0.00 2.34
4008 4142 5.540337 TGGCCAAACATGAATAAACCACTTA 59.460 36.000 0.61 0.00 0.00 2.24
4009 4143 4.346418 TGGCCAAACATGAATAAACCACTT 59.654 37.500 0.61 0.00 0.00 3.16
4010 4144 3.900601 TGGCCAAACATGAATAAACCACT 59.099 39.130 0.61 0.00 0.00 4.00
4011 4145 4.264460 TGGCCAAACATGAATAAACCAC 57.736 40.909 0.61 0.00 0.00 4.16
4012 4146 6.212388 ACTTATGGCCAAACATGAATAAACCA 59.788 34.615 10.96 0.00 32.39 3.67
4013 4147 6.639563 ACTTATGGCCAAACATGAATAAACC 58.360 36.000 10.96 0.00 32.39 3.27
4014 4148 8.546597 AAACTTATGGCCAAACATGAATAAAC 57.453 30.769 10.96 0.00 32.39 2.01
4015 4149 8.592809 AGAAACTTATGGCCAAACATGAATAAA 58.407 29.630 10.96 0.00 32.39 1.40
4016 4150 8.133024 AGAAACTTATGGCCAAACATGAATAA 57.867 30.769 10.96 0.00 32.39 1.40
4017 4151 7.147915 GGAGAAACTTATGGCCAAACATGAATA 60.148 37.037 10.96 0.00 32.39 1.75
4018 4152 6.351286 GGAGAAACTTATGGCCAAACATGAAT 60.351 38.462 10.96 0.00 32.39 2.57
4019 4153 5.047377 GGAGAAACTTATGGCCAAACATGAA 60.047 40.000 10.96 0.00 32.39 2.57
4020 4154 4.462483 GGAGAAACTTATGGCCAAACATGA 59.538 41.667 10.96 0.00 32.39 3.07
4021 4155 4.220382 TGGAGAAACTTATGGCCAAACATG 59.780 41.667 10.96 3.01 32.39 3.21
4022 4156 4.415596 TGGAGAAACTTATGGCCAAACAT 58.584 39.130 10.96 0.00 34.90 2.71
4049 4183 4.190772 ACAGAAATGTTTTTGCCAACCAG 58.809 39.130 0.00 0.00 0.00 4.00
4279 4414 6.885922 ACCTACAAGGCTAGAATAATTCGTT 58.114 36.000 0.00 0.00 39.63 3.85
4511 4647 2.032178 GTGTCTCAACCTTTGACAGTGC 59.968 50.000 0.00 0.00 40.73 4.40
4555 4691 3.433615 GGCTATTAGCATAGAAACTGGCG 59.566 47.826 17.11 0.00 44.75 5.69
4745 4881 6.940298 CCTATCTATGCCCTTATTCGGAAAAA 59.060 38.462 0.00 0.00 0.00 1.94
4750 4886 3.432326 GGCCTATCTATGCCCTTATTCGG 60.432 52.174 0.00 0.00 41.97 4.30
4833 4970 6.747125 TGTCCAAATGTAACACTTACGTAGA 58.253 36.000 0.00 0.00 38.98 2.59
4838 4975 7.435068 ACTCATGTCCAAATGTAACACTTAC 57.565 36.000 0.00 0.00 36.67 2.34
4892 5029 0.037303 CAGGGTGTGGAGATGTGCTT 59.963 55.000 0.00 0.00 0.00 3.91
4918 5055 5.819379 GCATATGTTGAATCTCTTGAGACCA 59.181 40.000 4.29 2.04 0.00 4.02
4925 5062 7.994911 TCTAATGGTGCATATGTTGAATCTCTT 59.005 33.333 4.29 0.00 0.00 2.85
4966 5103 2.158608 GCCCTGGGTTACAGCTGAATAT 60.159 50.000 23.35 0.00 46.14 1.28
4967 5104 1.211949 GCCCTGGGTTACAGCTGAATA 59.788 52.381 23.35 0.00 46.14 1.75
4968 5105 0.034089 GCCCTGGGTTACAGCTGAAT 60.034 55.000 23.35 0.27 46.14 2.57
4969 5106 1.378762 GCCCTGGGTTACAGCTGAA 59.621 57.895 23.35 7.64 46.14 3.02
5138 5275 5.106673 GCACACACTTTTATTAGTCTGGTCC 60.107 44.000 0.00 0.00 0.00 4.46
5325 5464 6.037786 TGTGAACTCTGATTCCTATTTCGT 57.962 37.500 0.00 0.00 0.00 3.85
5328 5467 7.721399 ACAAGTTGTGAACTCTGATTCCTATTT 59.279 33.333 7.96 0.00 41.91 1.40
5332 5471 5.041191 ACAAGTTGTGAACTCTGATTCCT 57.959 39.130 7.96 0.00 41.91 3.36
5333 5472 5.514279 CAACAAGTTGTGAACTCTGATTCC 58.486 41.667 9.79 0.00 41.91 3.01
5334 5473 4.972440 GCAACAAGTTGTGAACTCTGATTC 59.028 41.667 9.79 0.00 41.91 2.52
5335 5474 4.641989 AGCAACAAGTTGTGAACTCTGATT 59.358 37.500 9.79 0.00 41.91 2.57
5336 5475 4.202441 AGCAACAAGTTGTGAACTCTGAT 58.798 39.130 9.79 0.00 41.91 2.90
5337 5476 3.609853 AGCAACAAGTTGTGAACTCTGA 58.390 40.909 9.79 0.00 41.91 3.27
5338 5477 4.095483 AGAAGCAACAAGTTGTGAACTCTG 59.905 41.667 9.79 4.00 41.91 3.35
5385 5531 3.626670 GCAACAAGCAATAGAGCTGAGAT 59.373 43.478 0.00 0.00 45.89 2.75
5536 5682 2.224646 GCCCTGGGGAATTCAGAGATAC 60.225 54.545 16.03 0.00 37.50 2.24
5663 5810 9.407380 TCTTTATGTACATAACTTGGCATTGAT 57.593 29.630 24.60 0.00 33.40 2.57
5803 5954 2.303022 CAGGCCAGAGAACCTACAGAAA 59.697 50.000 5.01 0.00 33.38 2.52
6143 6294 3.185246 AGCTATCACCACTTCCAATCG 57.815 47.619 0.00 0.00 0.00 3.34
6148 6299 4.192317 CCAAACTAGCTATCACCACTTCC 58.808 47.826 0.00 0.00 0.00 3.46
6152 6303 5.523916 CACATACCAAACTAGCTATCACCAC 59.476 44.000 0.00 0.00 0.00 4.16
6182 6494 0.471191 CTCCACCATCAGCTATGCCA 59.529 55.000 0.00 0.00 33.92 4.92
6211 6523 7.312415 AGTACCCTGACATAAGTTAACAACT 57.688 36.000 8.61 0.00 45.46 3.16
6214 6526 8.308931 CAACTAGTACCCTGACATAAGTTAACA 58.691 37.037 8.61 0.00 0.00 2.41
6223 6535 6.134055 TGCTATACAACTAGTACCCTGACAT 58.866 40.000 0.00 0.00 35.05 3.06
6273 6585 3.709653 ACCTTCAATTGAGCCGGTATAGA 59.290 43.478 18.82 0.00 0.00 1.98
6280 6592 2.985896 TCCTAACCTTCAATTGAGCCG 58.014 47.619 8.41 2.87 0.00 5.52
6286 6598 7.775561 CCAAACTAGCTATCCTAACCTTCAATT 59.224 37.037 0.00 0.00 0.00 2.32
6290 6602 6.236558 ACCAAACTAGCTATCCTAACCTTC 57.763 41.667 0.00 0.00 0.00 3.46
6291 6603 7.689559 GCATACCAAACTAGCTATCCTAACCTT 60.690 40.741 0.00 0.00 0.00 3.50
6297 6609 3.006967 CGGCATACCAAACTAGCTATCCT 59.993 47.826 0.00 0.00 34.57 3.24
6317 6687 0.662619 TCAGTTTTGCTTGCAGACGG 59.337 50.000 0.00 1.05 0.00 4.79
6321 6691 2.159338 ACACTGTCAGTTTTGCTTGCAG 60.159 45.455 1.67 0.00 34.52 4.41
6323 6693 2.566952 ACACTGTCAGTTTTGCTTGC 57.433 45.000 1.67 0.00 0.00 4.01
6342 6712 4.344359 TGCATAATATCACGTTGCCCTA 57.656 40.909 3.87 0.00 32.39 3.53
6378 6749 5.644636 TGGAGTAATAAGTAAAAGGCAACGG 59.355 40.000 0.00 0.00 46.39 4.44
6395 6766 8.934023 ATTTGAGTAAAATCAGGTTGGAGTAA 57.066 30.769 0.00 0.00 32.85 2.24
6412 6783 5.888724 TGAAAACCACCAACAGATTTGAGTA 59.111 36.000 0.00 0.00 0.00 2.59
6447 6818 2.267174 AGCCTCTGATATGCGCATTT 57.733 45.000 30.42 21.71 0.00 2.32
6450 6821 2.872245 GTTAAAGCCTCTGATATGCGCA 59.128 45.455 14.96 14.96 0.00 6.09
6451 6822 3.134458 AGTTAAAGCCTCTGATATGCGC 58.866 45.455 0.00 0.00 0.00 6.09
6453 6824 4.578105 AGCAAGTTAAAGCCTCTGATATGC 59.422 41.667 0.00 0.00 0.00 3.14
6454 6825 7.254932 GGTTAGCAAGTTAAAGCCTCTGATATG 60.255 40.741 0.00 0.00 0.00 1.78
6455 6826 6.768381 GGTTAGCAAGTTAAAGCCTCTGATAT 59.232 38.462 0.00 0.00 0.00 1.63
6457 6828 4.944317 GGTTAGCAAGTTAAAGCCTCTGAT 59.056 41.667 0.00 0.00 0.00 2.90
6458 6829 4.202419 TGGTTAGCAAGTTAAAGCCTCTGA 60.202 41.667 0.00 0.00 0.00 3.27
6459 6830 4.072131 TGGTTAGCAAGTTAAAGCCTCTG 58.928 43.478 0.00 0.00 0.00 3.35
6460 6831 4.367039 TGGTTAGCAAGTTAAAGCCTCT 57.633 40.909 0.00 0.00 0.00 3.69
6461 6832 5.447624 TTTGGTTAGCAAGTTAAAGCCTC 57.552 39.130 0.00 0.00 0.00 4.70
6462 6833 5.538433 TGATTTGGTTAGCAAGTTAAAGCCT 59.462 36.000 0.00 0.00 0.00 4.58
6463 6834 5.778862 TGATTTGGTTAGCAAGTTAAAGCC 58.221 37.500 0.00 0.00 0.00 4.35
6464 6835 7.889589 AATGATTTGGTTAGCAAGTTAAAGC 57.110 32.000 0.00 0.00 0.00 3.51
6465 6836 9.474920 TCAAATGATTTGGTTAGCAAGTTAAAG 57.525 29.630 17.01 0.00 40.98 1.85
6466 6837 9.823647 TTCAAATGATTTGGTTAGCAAGTTAAA 57.176 25.926 17.01 0.00 40.98 1.52
6467 6838 9.823647 TTTCAAATGATTTGGTTAGCAAGTTAA 57.176 25.926 17.01 0.00 40.98 2.01
6468 6839 9.995003 ATTTCAAATGATTTGGTTAGCAAGTTA 57.005 25.926 17.01 0.00 40.98 2.24
6469 6840 8.907222 ATTTCAAATGATTTGGTTAGCAAGTT 57.093 26.923 17.01 0.00 40.98 2.66
6470 6841 8.907222 AATTTCAAATGATTTGGTTAGCAAGT 57.093 26.923 17.01 0.00 40.98 3.16
6473 6844 9.995003 ACTTAATTTCAAATGATTTGGTTAGCA 57.005 25.926 17.01 0.00 40.98 3.49
6537 6963 9.565213 GCAGCCATCACATAAGATATTATTTTC 57.435 33.333 0.00 0.00 0.00 2.29
6547 6973 1.473257 GGTCGCAGCCATCACATAAGA 60.473 52.381 0.00 0.00 0.00 2.10
6551 6977 1.225426 ATGGTCGCAGCCATCACAT 59.775 52.632 3.42 0.00 45.47 3.21
6591 7017 7.913297 TGGTTAGTCGAAACAATTTTTCTTCAG 59.087 33.333 2.63 0.00 29.35 3.02
6611 7037 8.132995 GGGGATCGTGTAAATTATTTTGGTTAG 58.867 37.037 0.00 0.00 0.00 2.34
6629 7055 2.514803 CAGAAACAAAAGGGGGATCGT 58.485 47.619 0.00 0.00 0.00 3.73
6630 7056 1.202348 GCAGAAACAAAAGGGGGATCG 59.798 52.381 0.00 0.00 0.00 3.69
6676 7103 7.201652 GCTATGAAAGACTATCCAAAAGTGACC 60.202 40.741 0.00 0.00 0.00 4.02
6729 7157 0.523072 CCATTTTGGCACGAGGACAG 59.477 55.000 0.00 0.00 34.57 3.51
6732 7160 0.109532 TGTCCATTTTGGCACGAGGA 59.890 50.000 0.00 0.00 37.47 3.71
6733 7161 1.135315 CATGTCCATTTTGGCACGAGG 60.135 52.381 0.00 0.00 37.47 4.63
6734 7162 1.135315 CCATGTCCATTTTGGCACGAG 60.135 52.381 0.00 0.00 37.47 4.18
6736 7164 0.887247 TCCATGTCCATTTTGGCACG 59.113 50.000 0.00 0.00 37.47 5.34
6782 7210 6.493458 AGCTTACAAAATGTCCTTGTACCATT 59.507 34.615 0.00 0.00 38.62 3.16
6798 7226 1.268999 CGCAGTTTGCCAGCTTACAAA 60.269 47.619 6.78 6.78 41.12 2.83
6801 7229 1.442688 GCGCAGTTTGCCAGCTTAC 60.443 57.895 0.30 0.00 41.12 2.34
6823 7251 4.920927 GCATTTACGCCAAAACAAGTACAT 59.079 37.500 0.00 0.00 0.00 2.29
6826 7254 4.569761 TGCATTTACGCCAAAACAAGTA 57.430 36.364 0.00 0.00 0.00 2.24
6838 7266 6.598525 TCTACAATTGACAGTTGCATTTACG 58.401 36.000 13.59 0.00 0.00 3.18
6849 7277 3.659786 TGGTCGGTTCTACAATTGACAG 58.340 45.455 13.59 8.84 0.00 3.51
6851 7279 4.671766 GCATTGGTCGGTTCTACAATTGAC 60.672 45.833 13.59 0.00 31.67 3.18
6852 7280 3.438781 GCATTGGTCGGTTCTACAATTGA 59.561 43.478 13.59 0.00 31.67 2.57
6853 7281 3.440173 AGCATTGGTCGGTTCTACAATTG 59.560 43.478 3.24 3.24 31.67 2.32
6854 7282 3.440173 CAGCATTGGTCGGTTCTACAATT 59.560 43.478 0.00 0.00 31.67 2.32
6855 7283 3.009723 CAGCATTGGTCGGTTCTACAAT 58.990 45.455 0.00 0.00 34.13 2.71
6856 7284 2.422597 CAGCATTGGTCGGTTCTACAA 58.577 47.619 0.00 0.00 0.00 2.41
6857 7285 1.943968 GCAGCATTGGTCGGTTCTACA 60.944 52.381 0.00 0.00 0.00 2.74
6858 7286 0.727398 GCAGCATTGGTCGGTTCTAC 59.273 55.000 0.00 0.00 0.00 2.59
6859 7287 0.392461 GGCAGCATTGGTCGGTTCTA 60.392 55.000 0.00 0.00 0.00 2.10
6860 7288 1.675641 GGCAGCATTGGTCGGTTCT 60.676 57.895 0.00 0.00 0.00 3.01
6905 7344 5.990996 AGAACCCAACACTGCAATTTAATTG 59.009 36.000 12.84 12.84 43.06 2.32
6906 7345 5.990996 CAGAACCCAACACTGCAATTTAATT 59.009 36.000 0.00 0.00 0.00 1.40
6908 7347 4.202202 CCAGAACCCAACACTGCAATTTAA 60.202 41.667 0.00 0.00 0.00 1.52
6909 7348 3.320541 CCAGAACCCAACACTGCAATTTA 59.679 43.478 0.00 0.00 0.00 1.40
6910 7349 2.102925 CCAGAACCCAACACTGCAATTT 59.897 45.455 0.00 0.00 0.00 1.82
6911 7350 1.688197 CCAGAACCCAACACTGCAATT 59.312 47.619 0.00 0.00 0.00 2.32
6912 7351 1.331214 CCAGAACCCAACACTGCAAT 58.669 50.000 0.00 0.00 0.00 3.56
6913 7352 0.033601 ACCAGAACCCAACACTGCAA 60.034 50.000 0.00 0.00 0.00 4.08
6914 7353 0.751277 CACCAGAACCCAACACTGCA 60.751 55.000 0.00 0.00 0.00 4.41
6915 7354 0.751643 ACACCAGAACCCAACACTGC 60.752 55.000 0.00 0.00 0.00 4.40
6916 7355 2.631160 TACACCAGAACCCAACACTG 57.369 50.000 0.00 0.00 0.00 3.66
6917 7356 3.876309 AATACACCAGAACCCAACACT 57.124 42.857 0.00 0.00 0.00 3.55
6923 7362 2.560981 CCCAACAAATACACCAGAACCC 59.439 50.000 0.00 0.00 0.00 4.11
6975 7414 6.509656 TCATATTGATCTTGGGTGTACGTAC 58.490 40.000 18.90 18.90 0.00 3.67
6980 7419 6.712095 GCATCTTCATATTGATCTTGGGTGTA 59.288 38.462 0.00 0.00 0.00 2.90
7154 7593 2.031495 ACCAAGTAGAGAGGCCTTGT 57.969 50.000 6.77 0.00 35.02 3.16
7157 7596 0.615850 GCAACCAAGTAGAGAGGCCT 59.384 55.000 3.86 3.86 0.00 5.19
7245 7684 5.456763 GCCCAATGTGGTTATAATCTCCTCT 60.457 44.000 0.00 0.00 35.17 3.69
7256 7695 9.349713 CTTATAATTAGAAGCCCAATGTGGTTA 57.650 33.333 6.90 0.00 35.17 2.85
7280 7719 6.072649 GCTAGGTCTAGTTCCTCTAATCCTT 58.927 44.000 11.31 0.00 35.29 3.36
7331 7771 6.153851 GGAGCCTTCTCTAGTTCTTCTAGTTT 59.846 42.308 0.00 0.00 44.59 2.66
7349 7795 2.831526 ACACACAAGTTTTTGGAGCCTT 59.168 40.909 0.00 0.00 38.66 4.35
7377 7824 9.805204 ACCTATATATATGAGAGGGTTTCCATT 57.195 33.333 12.66 0.00 34.83 3.16
7391 7839 6.784969 CCTCTCCCCTCCAACCTATATATATG 59.215 46.154 5.44 0.00 0.00 1.78
7459 7920 1.081277 GACTCCTCCCCCTCTTGGT 59.919 63.158 0.00 0.00 0.00 3.67
7475 7944 0.819666 GATGCCGAATTGGAGGGGAC 60.820 60.000 0.00 0.00 42.00 4.46
7476 7945 1.531748 GATGCCGAATTGGAGGGGA 59.468 57.895 0.00 0.00 42.00 4.81
7492 7961 1.002857 CACTTGGGAAGGGAAGGGAT 58.997 55.000 0.00 0.00 32.08 3.85
7533 8006 1.228737 GGCCACCAAAGCCCAAGTA 60.229 57.895 0.00 0.00 45.16 2.24
7602 8075 5.649395 GGGGACACAACTAAGGGTATAAAAC 59.351 44.000 0.00 0.00 0.00 2.43
7603 8076 5.281141 GGGGGACACAACTAAGGGTATAAAA 60.281 44.000 0.00 0.00 0.00 1.52
7604 8077 4.227982 GGGGGACACAACTAAGGGTATAAA 59.772 45.833 0.00 0.00 0.00 1.40
7605 8078 3.781965 GGGGGACACAACTAAGGGTATAA 59.218 47.826 0.00 0.00 0.00 0.98
7606 8079 3.014342 AGGGGGACACAACTAAGGGTATA 59.986 47.826 0.00 0.00 0.00 1.47
7607 8080 2.202707 GGGGGACACAACTAAGGGTAT 58.797 52.381 0.00 0.00 0.00 2.73
7608 8081 1.152701 AGGGGGACACAACTAAGGGTA 59.847 52.381 0.00 0.00 0.00 3.69
7609 8082 0.104090 AGGGGGACACAACTAAGGGT 60.104 55.000 0.00 0.00 0.00 4.34
7610 8083 0.618981 GAGGGGGACACAACTAAGGG 59.381 60.000 0.00 0.00 0.00 3.95
7611 8084 0.249398 CGAGGGGGACACAACTAAGG 59.751 60.000 0.00 0.00 0.00 2.69
7612 8085 0.974383 ACGAGGGGGACACAACTAAG 59.026 55.000 0.00 0.00 0.00 2.18
7613 8086 0.971386 GACGAGGGGGACACAACTAA 59.029 55.000 0.00 0.00 0.00 2.24
7614 8087 0.178955 TGACGAGGGGGACACAACTA 60.179 55.000 0.00 0.00 0.00 2.24
7615 8088 1.458777 TGACGAGGGGGACACAACT 60.459 57.895 0.00 0.00 0.00 3.16
7616 8089 1.004918 CTGACGAGGGGGACACAAC 60.005 63.158 0.00 0.00 0.00 3.32
7617 8090 2.214216 CCTGACGAGGGGGACACAA 61.214 63.158 0.00 0.00 35.40 3.33
7618 8091 2.455960 ATCCTGACGAGGGGGACACA 62.456 60.000 0.00 0.00 40.25 3.72
7619 8092 1.265454 AATCCTGACGAGGGGGACAC 61.265 60.000 0.00 0.00 40.25 3.67
7620 8093 1.080354 AATCCTGACGAGGGGGACA 59.920 57.895 0.00 0.00 40.25 4.02
7621 8094 1.522569 CAATCCTGACGAGGGGGAC 59.477 63.158 0.00 0.00 40.25 4.46
7622 8095 2.367202 GCAATCCTGACGAGGGGGA 61.367 63.158 0.00 0.00 40.25 4.81
7623 8096 2.190578 GCAATCCTGACGAGGGGG 59.809 66.667 0.00 0.00 40.25 5.40
7624 8097 2.190578 GGCAATCCTGACGAGGGG 59.809 66.667 0.00 0.00 40.25 4.79
7625 8098 2.190578 GGGCAATCCTGACGAGGG 59.809 66.667 0.00 0.00 40.25 4.30
7626 8099 1.048724 TAGGGGCAATCCTGACGAGG 61.049 60.000 0.00 0.00 41.39 4.63
7627 8100 0.390860 CTAGGGGCAATCCTGACGAG 59.609 60.000 0.00 0.00 37.75 4.18
7628 8101 0.325296 ACTAGGGGCAATCCTGACGA 60.325 55.000 0.00 0.00 37.75 4.20
7629 8102 0.541863 AACTAGGGGCAATCCTGACG 59.458 55.000 0.00 0.00 37.75 4.35
7630 8103 2.239907 AGAAACTAGGGGCAATCCTGAC 59.760 50.000 0.00 0.00 37.75 3.51
7631 8104 2.239654 CAGAAACTAGGGGCAATCCTGA 59.760 50.000 0.00 0.00 37.75 3.86
7632 8105 2.239654 TCAGAAACTAGGGGCAATCCTG 59.760 50.000 0.00 0.00 37.75 3.86
7633 8106 2.562296 TCAGAAACTAGGGGCAATCCT 58.438 47.619 0.00 0.00 40.79 3.24
7634 8107 3.366052 TTCAGAAACTAGGGGCAATCC 57.634 47.619 0.00 0.00 0.00 3.01
7635 8108 4.522789 TGTTTTCAGAAACTAGGGGCAATC 59.477 41.667 0.00 0.00 44.33 2.67
7636 8109 4.280929 GTGTTTTCAGAAACTAGGGGCAAT 59.719 41.667 0.00 0.00 44.33 3.56
7637 8110 3.634910 GTGTTTTCAGAAACTAGGGGCAA 59.365 43.478 0.00 0.00 44.33 4.52
7638 8111 3.219281 GTGTTTTCAGAAACTAGGGGCA 58.781 45.455 0.00 0.00 44.33 5.36
7639 8112 2.225727 CGTGTTTTCAGAAACTAGGGGC 59.774 50.000 0.00 0.00 44.33 5.80
7640 8113 3.250040 CACGTGTTTTCAGAAACTAGGGG 59.750 47.826 7.58 0.00 44.33 4.79
7641 8114 3.303791 GCACGTGTTTTCAGAAACTAGGG 60.304 47.826 18.38 0.97 44.33 3.53
7642 8115 3.560068 AGCACGTGTTTTCAGAAACTAGG 59.440 43.478 18.38 0.00 44.33 3.02
7643 8116 4.508124 AGAGCACGTGTTTTCAGAAACTAG 59.492 41.667 18.38 0.00 44.33 2.57
7644 8117 4.439057 AGAGCACGTGTTTTCAGAAACTA 58.561 39.130 18.38 0.00 44.33 2.24
7645 8118 3.270877 AGAGCACGTGTTTTCAGAAACT 58.729 40.909 18.38 0.67 44.33 2.66
7646 8119 3.675467 AGAGCACGTGTTTTCAGAAAC 57.325 42.857 18.38 0.00 44.29 2.78
7647 8120 3.730662 GCAAGAGCACGTGTTTTCAGAAA 60.731 43.478 18.38 0.00 41.58 2.52
7648 8121 2.223249 GCAAGAGCACGTGTTTTCAGAA 60.223 45.455 18.38 0.00 41.58 3.02
7649 8122 1.330521 GCAAGAGCACGTGTTTTCAGA 59.669 47.619 18.38 0.00 41.58 3.27
7650 8123 1.597937 GGCAAGAGCACGTGTTTTCAG 60.598 52.381 18.38 10.22 44.61 3.02
7651 8124 0.380378 GGCAAGAGCACGTGTTTTCA 59.620 50.000 18.38 0.00 44.61 2.69
7652 8125 0.317854 GGGCAAGAGCACGTGTTTTC 60.318 55.000 18.38 12.45 44.61 2.29
7653 8126 1.733526 GGGCAAGAGCACGTGTTTT 59.266 52.632 18.38 2.96 44.61 2.43
7654 8127 3.432186 GGGCAAGAGCACGTGTTT 58.568 55.556 18.38 5.87 44.61 2.83
7661 8134 2.203480 GTGGGTTGGGCAAGAGCA 60.203 61.111 0.00 0.00 44.61 4.26
7662 8135 1.115326 AAAGTGGGTTGGGCAAGAGC 61.115 55.000 0.00 0.00 41.10 4.09
7663 8136 0.675633 CAAAGTGGGTTGGGCAAGAG 59.324 55.000 0.00 0.00 0.00 2.85
7664 8137 0.758685 CCAAAGTGGGTTGGGCAAGA 60.759 55.000 0.00 0.00 43.79 3.02
7665 8138 1.747774 CCAAAGTGGGTTGGGCAAG 59.252 57.895 0.00 0.00 43.79 4.01
7666 8139 2.439104 GCCAAAGTGGGTTGGGCAA 61.439 57.895 6.12 0.00 46.97 4.52
7667 8140 2.841988 GCCAAAGTGGGTTGGGCA 60.842 61.111 6.12 0.00 46.97 5.36
7668 8141 3.989787 CGCCAAAGTGGGTTGGGC 61.990 66.667 6.12 0.00 46.97 5.36
7669 8142 2.520741 ACGCCAAAGTGGGTTGGG 60.521 61.111 6.12 0.00 46.97 4.12
7671 8144 0.030638 CAAGACGCCAAAGTGGGTTG 59.969 55.000 0.00 0.00 38.19 3.77
7672 8145 0.395173 ACAAGACGCCAAAGTGGGTT 60.395 50.000 0.00 0.00 38.19 4.11
7673 8146 1.226262 ACAAGACGCCAAAGTGGGT 59.774 52.632 0.00 0.00 38.19 4.51
7674 8147 4.157607 ACAAGACGCCAAAGTGGG 57.842 55.556 0.00 0.00 38.19 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.