Multiple sequence alignment - TraesCS4D01G261400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G261400 chr4D 100.000 5604 0 0 1 5604 432585815 432591418 0.000000e+00 10349.0
1 TraesCS4D01G261400 chr4D 91.743 109 9 0 2420 2528 432588194 432588302 9.720000e-33 152.0
2 TraesCS4D01G261400 chr4D 91.743 109 9 0 2380 2488 432588234 432588342 9.720000e-33 152.0
3 TraesCS4D01G261400 chr4D 100.000 29 0 0 2500 2528 432588194 432588222 3.000000e-03 54.7
4 TraesCS4D01G261400 chr4D 100.000 29 0 0 2380 2408 432588314 432588342 3.000000e-03 54.7
5 TraesCS4D01G261400 chr4A 93.990 2296 110 16 2810 5089 33864885 33867168 0.000000e+00 3450.0
6 TraesCS4D01G261400 chr4A 93.157 2119 65 26 751 2812 33861032 33863127 0.000000e+00 3037.0
7 TraesCS4D01G261400 chr4A 83.953 592 67 21 173 754 33860403 33860976 4.940000e-150 542.0
8 TraesCS4D01G261400 chr4A 83.967 368 24 13 5250 5604 33867248 33867593 2.520000e-83 320.0
9 TraesCS4D01G261400 chr4A 94.444 36 1 1 2500 2534 33862683 33862718 3.000000e-03 54.7
10 TraesCS4D01G261400 chr4B 89.432 2517 164 45 2477 4923 530968053 530965569 0.000000e+00 3081.0
11 TraesCS4D01G261400 chr4B 88.013 901 63 13 875 1744 530969711 530968825 0.000000e+00 1024.0
12 TraesCS4D01G261400 chr4B 94.350 354 20 0 1767 2120 530968681 530968328 1.370000e-150 544.0
13 TraesCS4D01G261400 chr4B 88.803 259 16 8 2178 2424 530968304 530968047 7.050000e-79 305.0
14 TraesCS4D01G261400 chr4B 86.667 135 14 3 1 132 30854409 30854542 4.520000e-31 147.0
15 TraesCS4D01G261400 chr4B 100.000 28 0 0 2500 2527 530968091 530968064 1.000000e-02 52.8
16 TraesCS4D01G261400 chr6A 82.460 1813 206 63 2838 4611 564985805 564984066 0.000000e+00 1483.0
17 TraesCS4D01G261400 chr6A 81.362 1175 119 50 980 2115 564987810 564986697 0.000000e+00 865.0
18 TraesCS4D01G261400 chr6A 91.549 71 5 1 2346 2415 564986267 564986197 4.620000e-16 97.1
19 TraesCS4D01G261400 chr6B 82.964 1309 141 38 3397 4678 636590442 636589189 0.000000e+00 1107.0
20 TraesCS4D01G261400 chr6B 81.042 1171 126 47 980 2115 636592698 636591589 0.000000e+00 845.0
21 TraesCS4D01G261400 chr6B 83.019 424 49 11 2838 3261 636590921 636590521 4.130000e-96 363.0
22 TraesCS4D01G261400 chr6B 88.785 107 11 1 2350 2455 636591372 636591266 4.560000e-26 130.0
23 TraesCS4D01G261400 chr6B 76.724 232 33 8 2460 2678 636591341 636591118 5.940000e-20 110.0
24 TraesCS4D01G261400 chr6B 96.875 32 1 0 2500 2531 636591341 636591310 3.000000e-03 54.7
25 TraesCS4D01G261400 chr6D 82.061 1388 164 55 3330 4683 422208696 422207360 0.000000e+00 1105.0
26 TraesCS4D01G261400 chr6D 80.442 1176 136 44 980 2116 422210917 422209797 0.000000e+00 811.0
27 TraesCS4D01G261400 chr6D 84.434 424 43 11 2838 3261 422209106 422208706 4.070000e-106 396.0
28 TraesCS4D01G261400 chr7A 90.909 143 8 2 1 140 263351733 263351593 2.670000e-43 187.0
29 TraesCS4D01G261400 chr7A 87.591 137 10 6 1 132 538123888 538124022 9.720000e-33 152.0
30 TraesCS4D01G261400 chr1B 91.111 135 8 2 1 132 655842269 655842402 4.460000e-41 180.0
31 TraesCS4D01G261400 chr7D 88.971 136 9 3 1 132 166199882 166200015 4.490000e-36 163.0
32 TraesCS4D01G261400 chr5D 92.857 112 5 1 24 132 487987219 487987330 5.810000e-35 159.0
33 TraesCS4D01G261400 chr5A 92.857 112 5 1 24 132 608707493 608707604 5.810000e-35 159.0
34 TraesCS4D01G261400 chr3B 87.313 134 15 2 1 132 263984553 263984686 9.720000e-33 152.0
35 TraesCS4D01G261400 chr3B 100.000 32 0 0 803 834 625198611 625198642 6.060000e-05 60.2
36 TraesCS4D01G261400 chrUn 85.401 137 16 3 1 134 10139177 10139042 7.570000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G261400 chr4D 432585815 432591418 5603 False 2152.480000 10349 96.697200 1 5604 5 chr4D.!!$F1 5603
1 TraesCS4D01G261400 chr4A 33860403 33867593 7190 False 1480.740000 3450 89.902200 173 5604 5 chr4A.!!$F1 5431
2 TraesCS4D01G261400 chr4B 530965569 530969711 4142 True 1001.360000 3081 92.119600 875 4923 5 chr4B.!!$R1 4048
3 TraesCS4D01G261400 chr6A 564984066 564987810 3744 True 815.033333 1483 85.123667 980 4611 3 chr6A.!!$R1 3631
4 TraesCS4D01G261400 chr6B 636589189 636592698 3509 True 434.950000 1107 84.901500 980 4678 6 chr6B.!!$R1 3698
5 TraesCS4D01G261400 chr6D 422207360 422210917 3557 True 770.666667 1105 82.312333 980 4683 3 chr6D.!!$R1 3703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 138 0.041238 TAGCTCCGCCCCTGCTATAT 59.959 55.000 0.00 0.00 38.15 0.86 F
214 215 0.388520 CACTGCTCGACCGATTGACA 60.389 55.000 0.00 0.00 0.00 3.58 F
823 890 0.623723 AAAGGAGCTAAATGGGCCGA 59.376 50.000 0.00 0.00 0.00 5.54 F
2452 2977 1.129998 GCATCAACTAGCACTGCTGTG 59.870 52.381 18.54 18.54 46.37 3.66 F
4081 6515 0.685458 AAGCATGGTTCCCTGCATCC 60.685 55.000 18.23 0.00 40.88 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1854 2116 0.109412 GCAGATGGCTTTGTGTCAGC 60.109 55.0 0.0 0.00 40.25 4.26 R
1866 2128 0.463295 ACCGCTTGAGATGCAGATGG 60.463 55.0 0.0 0.00 0.00 3.51 R
2690 3292 0.324943 AGTGCGGGTAGATGCAAACT 59.675 50.0 0.0 0.00 43.75 2.66 R
4397 6839 0.315886 TGAATGGCTGCAGTGCTTTG 59.684 50.0 17.6 7.76 0.00 2.77 R
5239 7745 0.038892 CAAGCAGGCATTGACACACC 60.039 55.0 0.0 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.536895 TCTCTTCTCGTGTATCTACAACTAC 57.463 40.000 0.00 0.00 38.04 2.73
26 27 7.101700 TCTCTTCTCGTGTATCTACAACTACA 58.898 38.462 0.00 0.00 38.04 2.74
27 28 7.064371 TCTCTTCTCGTGTATCTACAACTACAC 59.936 40.741 3.37 3.37 42.66 2.90
28 29 6.877855 TCTTCTCGTGTATCTACAACTACACT 59.122 38.462 10.16 0.00 43.49 3.55
29 30 6.418585 TCTCGTGTATCTACAACTACACTG 57.581 41.667 10.16 5.34 43.49 3.66
30 31 4.978186 TCGTGTATCTACAACTACACTGC 58.022 43.478 10.16 0.00 43.49 4.40
31 32 4.103357 CGTGTATCTACAACTACACTGCC 58.897 47.826 10.16 0.00 43.49 4.85
32 33 4.380128 CGTGTATCTACAACTACACTGCCA 60.380 45.833 10.16 0.00 43.49 4.92
33 34 5.661458 GTGTATCTACAACTACACTGCCAT 58.339 41.667 5.77 0.00 42.75 4.40
34 35 6.459161 CGTGTATCTACAACTACACTGCCATA 60.459 42.308 10.16 0.00 43.49 2.74
35 36 6.696148 GTGTATCTACAACTACACTGCCATAC 59.304 42.308 5.77 0.00 42.75 2.39
36 37 4.365899 TCTACAACTACACTGCCATACG 57.634 45.455 0.00 0.00 0.00 3.06
37 38 3.760151 TCTACAACTACACTGCCATACGT 59.240 43.478 0.00 0.00 0.00 3.57
38 39 4.943093 TCTACAACTACACTGCCATACGTA 59.057 41.667 0.00 0.00 0.00 3.57
39 40 4.730949 ACAACTACACTGCCATACGTAT 57.269 40.909 1.14 1.14 0.00 3.06
40 41 5.840243 ACAACTACACTGCCATACGTATA 57.160 39.130 7.96 0.00 0.00 1.47
41 42 6.211587 ACAACTACACTGCCATACGTATAA 57.788 37.500 7.96 0.00 0.00 0.98
42 43 6.632909 ACAACTACACTGCCATACGTATAAA 58.367 36.000 7.96 0.00 0.00 1.40
43 44 6.532657 ACAACTACACTGCCATACGTATAAAC 59.467 38.462 7.96 1.37 0.00 2.01
61 62 9.894783 CGTATAAACGCATATAGGAGCTTATAT 57.105 33.333 7.09 0.00 43.12 0.86
66 67 8.521170 AACGCATATAGGAGCTTATATACTGA 57.479 34.615 0.00 0.00 0.00 3.41
67 68 8.521170 ACGCATATAGGAGCTTATATACTGAA 57.479 34.615 0.00 0.00 0.00 3.02
68 69 9.137459 ACGCATATAGGAGCTTATATACTGAAT 57.863 33.333 0.00 0.00 0.00 2.57
69 70 9.973450 CGCATATAGGAGCTTATATACTGAATT 57.027 33.333 0.00 0.00 0.00 2.17
77 78 9.237846 GGAGCTTATATACTGAATTGTTTTTGC 57.762 33.333 0.00 0.00 0.00 3.68
78 79 9.787532 GAGCTTATATACTGAATTGTTTTTGCA 57.212 29.630 0.00 0.00 0.00 4.08
91 92 4.693538 GTTTTTGCAAACAATGTTGGGT 57.306 36.364 12.39 0.00 41.85 4.51
92 93 5.803020 GTTTTTGCAAACAATGTTGGGTA 57.197 34.783 12.39 0.00 41.85 3.69
93 94 6.370433 GTTTTTGCAAACAATGTTGGGTAT 57.630 33.333 12.39 0.00 41.85 2.73
94 95 5.998454 TTTTGCAAACAATGTTGGGTATG 57.002 34.783 12.39 0.00 35.21 2.39
95 96 3.037431 TGCAAACAATGTTGGGTATGC 57.963 42.857 11.51 11.51 0.00 3.14
96 97 2.366590 TGCAAACAATGTTGGGTATGCA 59.633 40.909 15.75 15.75 0.00 3.96
97 98 3.007723 TGCAAACAATGTTGGGTATGCAT 59.992 39.130 15.75 3.79 0.00 3.96
98 99 4.002316 GCAAACAATGTTGGGTATGCATT 58.998 39.130 3.54 0.00 33.64 3.56
101 102 3.248495 CAATGTTGGGTATGCATTGCA 57.752 42.857 14.72 14.72 41.61 4.08
118 119 1.986882 GCATACCCTTGCATTAGGCT 58.013 50.000 0.00 0.00 45.15 4.58
119 120 3.140325 GCATACCCTTGCATTAGGCTA 57.860 47.619 0.00 0.00 45.15 3.93
120 121 3.077359 GCATACCCTTGCATTAGGCTAG 58.923 50.000 0.00 0.00 45.15 3.42
121 122 2.930826 TACCCTTGCATTAGGCTAGC 57.069 50.000 6.04 6.04 42.96 3.42
122 123 1.216990 ACCCTTGCATTAGGCTAGCT 58.783 50.000 15.72 3.22 42.96 3.32
123 124 1.141858 ACCCTTGCATTAGGCTAGCTC 59.858 52.381 15.72 4.82 42.96 4.09
124 125 1.544314 CCCTTGCATTAGGCTAGCTCC 60.544 57.143 15.72 0.00 42.96 4.70
125 126 1.506493 CTTGCATTAGGCTAGCTCCG 58.494 55.000 15.72 0.34 45.15 4.63
126 127 0.532862 TTGCATTAGGCTAGCTCCGC 60.533 55.000 15.72 10.92 45.15 5.54
134 135 2.521950 CTAGCTCCGCCCCTGCTA 60.522 66.667 0.00 0.00 38.15 3.49
135 136 1.910772 CTAGCTCCGCCCCTGCTAT 60.911 63.158 0.00 0.00 38.42 2.97
136 137 0.612174 CTAGCTCCGCCCCTGCTATA 60.612 60.000 0.00 0.00 38.42 1.31
137 138 0.041238 TAGCTCCGCCCCTGCTATAT 59.959 55.000 0.00 0.00 38.15 0.86
138 139 1.078848 GCTCCGCCCCTGCTATATG 60.079 63.158 0.00 0.00 34.43 1.78
139 140 1.599047 CTCCGCCCCTGCTATATGG 59.401 63.158 0.00 0.00 34.43 2.74
140 141 1.903877 CTCCGCCCCTGCTATATGGG 61.904 65.000 0.00 0.00 42.98 4.00
145 146 0.912486 CCCCTGCTATATGGGCTACC 59.088 60.000 0.00 0.00 42.03 3.18
146 147 0.912486 CCCTGCTATATGGGCTACCC 59.088 60.000 0.00 0.00 45.71 3.69
147 148 1.555765 CCCTGCTATATGGGCTACCCT 60.556 57.143 3.93 0.00 45.70 4.34
148 149 2.269940 CCTGCTATATGGGCTACCCTT 58.730 52.381 3.93 0.00 45.70 3.95
149 150 2.026822 CCTGCTATATGGGCTACCCTTG 60.027 54.545 3.93 0.00 45.70 3.61
150 151 1.351017 TGCTATATGGGCTACCCTTGC 59.649 52.381 3.93 0.00 45.70 4.01
151 152 1.351017 GCTATATGGGCTACCCTTGCA 59.649 52.381 3.93 0.00 45.70 4.08
152 153 2.025887 GCTATATGGGCTACCCTTGCAT 60.026 50.000 3.93 0.00 45.70 3.96
153 154 3.562176 GCTATATGGGCTACCCTTGCATT 60.562 47.826 3.93 0.00 45.70 3.56
154 155 4.324254 GCTATATGGGCTACCCTTGCATTA 60.324 45.833 3.93 0.00 45.70 1.90
155 156 4.953781 ATATGGGCTACCCTTGCATTAT 57.046 40.909 3.93 0.00 45.70 1.28
156 157 2.363306 TGGGCTACCCTTGCATTATG 57.637 50.000 3.93 0.00 45.70 1.90
157 158 0.961753 GGGCTACCCTTGCATTATGC 59.038 55.000 10.65 10.65 41.72 3.14
158 159 1.479389 GGGCTACCCTTGCATTATGCT 60.479 52.381 18.44 0.00 41.83 3.79
159 160 2.224769 GGGCTACCCTTGCATTATGCTA 60.225 50.000 18.44 9.93 41.83 3.49
160 161 3.077359 GGCTACCCTTGCATTATGCTAG 58.923 50.000 18.91 18.91 45.31 3.42
161 162 2.485814 GCTACCCTTGCATTATGCTAGC 59.514 50.000 20.09 17.86 43.22 3.42
162 163 3.808618 GCTACCCTTGCATTATGCTAGCT 60.809 47.826 20.09 11.21 43.22 3.32
163 164 2.856222 ACCCTTGCATTATGCTAGCTC 58.144 47.619 20.09 0.00 43.22 4.09
164 165 2.157738 CCCTTGCATTATGCTAGCTCC 58.842 52.381 20.09 0.00 43.22 4.70
165 166 1.802960 CCTTGCATTATGCTAGCTCCG 59.197 52.381 20.09 5.85 43.22 4.63
166 167 1.196354 CTTGCATTATGCTAGCTCCGC 59.804 52.381 18.44 11.62 45.31 5.54
167 168 0.603707 TGCATTATGCTAGCTCCGCC 60.604 55.000 18.44 0.82 45.31 6.13
168 169 1.301677 GCATTATGCTAGCTCCGCCC 61.302 60.000 17.23 0.00 40.96 6.13
169 170 0.674895 CATTATGCTAGCTCCGCCCC 60.675 60.000 17.23 0.00 0.00 5.80
170 171 0.838122 ATTATGCTAGCTCCGCCCCT 60.838 55.000 17.23 0.00 0.00 4.79
171 172 1.758440 TTATGCTAGCTCCGCCCCTG 61.758 60.000 17.23 0.00 0.00 4.45
208 209 0.456142 CGATTTCACTGCTCGACCGA 60.456 55.000 0.00 0.00 34.41 4.69
210 211 2.271800 GATTTCACTGCTCGACCGATT 58.728 47.619 0.00 0.00 0.00 3.34
214 215 0.388520 CACTGCTCGACCGATTGACA 60.389 55.000 0.00 0.00 0.00 3.58
216 217 0.994995 CTGCTCGACCGATTGACAAG 59.005 55.000 0.00 0.00 0.00 3.16
312 314 9.617523 AAATTCATGGATTTTCAGAAAGTTTGT 57.382 25.926 6.11 0.00 0.00 2.83
402 406 8.667076 AATTTGCCTGAATTTTGGAATATAGC 57.333 30.769 2.35 0.00 0.00 2.97
410 414 8.359875 TGAATTTTGGAATATAGCTCACCAAA 57.640 30.769 14.28 14.28 44.99 3.28
413 417 8.773033 ATTTTGGAATATAGCTCACCAAATCT 57.227 30.769 17.05 9.59 45.62 2.40
450 454 6.721704 AATTTCAGGAAAAGCTCTCAAACT 57.278 33.333 0.00 0.00 33.56 2.66
539 545 7.159437 TCACAAGTTGTAAAAATTTCATGCG 57.841 32.000 8.49 0.00 0.00 4.73
665 671 2.337849 ACCCATGGGAAAACTGCATTT 58.662 42.857 38.07 7.08 38.96 2.32
667 673 3.906846 ACCCATGGGAAAACTGCATTTAA 59.093 39.130 38.07 0.00 38.96 1.52
668 674 4.349342 ACCCATGGGAAAACTGCATTTAAA 59.651 37.500 38.07 0.00 38.96 1.52
669 675 5.163152 ACCCATGGGAAAACTGCATTTAAAA 60.163 36.000 38.07 0.00 38.96 1.52
670 676 5.767168 CCCATGGGAAAACTGCATTTAAAAA 59.233 36.000 28.27 0.00 37.50 1.94
703 709 5.862678 ATCTTCAAAAAGGTTCCCGAAAA 57.137 34.783 0.00 0.00 33.03 2.29
704 710 5.001237 TCTTCAAAAAGGTTCCCGAAAAC 57.999 39.130 0.00 0.00 33.03 2.43
705 711 8.632941 GAATCTTCAAAAAGGTTCCCGAAAACC 61.633 40.741 10.04 10.04 43.86 3.27
725 731 7.605410 AAACCGGTGATAAAACTACTACATG 57.395 36.000 8.52 0.00 0.00 3.21
785 850 6.533723 GGATCGACCGAACATATGCAAATATA 59.466 38.462 1.58 0.00 0.00 0.86
786 851 6.699895 TCGACCGAACATATGCAAATATAC 57.300 37.500 1.58 0.00 0.00 1.47
788 853 6.364976 TCGACCGAACATATGCAAATATACAG 59.635 38.462 1.58 0.00 0.00 2.74
789 854 6.401047 CGACCGAACATATGCAAATATACAGG 60.401 42.308 1.58 0.00 0.00 4.00
823 890 0.623723 AAAGGAGCTAAATGGGCCGA 59.376 50.000 0.00 0.00 0.00 5.54
835 902 3.081409 GGCCGAGCCCAAGGACTA 61.081 66.667 3.73 0.00 44.06 2.59
837 904 1.527370 GCCGAGCCCAAGGACTAAT 59.473 57.895 0.00 0.00 0.00 1.73
840 907 1.270358 CCGAGCCCAAGGACTAATAGC 60.270 57.143 0.00 0.00 0.00 2.97
841 908 1.603172 CGAGCCCAAGGACTAATAGCG 60.603 57.143 0.00 0.00 0.00 4.26
846 914 1.583054 CAAGGACTAATAGCGGGTGC 58.417 55.000 0.00 0.00 43.24 5.01
924 992 1.420532 AAACCCTTGCTCCCCGTGTA 61.421 55.000 0.00 0.00 0.00 2.90
1169 1252 1.520342 GGCGCCAGAGTAAGAGCTG 60.520 63.158 24.80 0.00 0.00 4.24
1192 1275 4.024984 CTCCCTGACCCCTCCCCA 62.025 72.222 0.00 0.00 0.00 4.96
1354 1460 1.670791 TTGGTTCCGTTTTTCGCTCT 58.329 45.000 0.00 0.00 38.35 4.09
1489 1599 1.613630 GAAGGAGGTGGAGGAGGCA 60.614 63.158 0.00 0.00 0.00 4.75
1633 1749 5.717119 AGAGAACATTGGTTTGATTGCATC 58.283 37.500 0.00 0.00 37.36 3.91
1642 1778 3.492313 GTTTGATTGCATCGTGTCCTTC 58.508 45.455 0.00 0.00 0.00 3.46
1677 1816 7.497909 TGTTTGCAACTACTAGCTCTAGTTTTT 59.502 33.333 14.03 6.09 43.35 1.94
1690 1829 5.408909 GCTCTAGTTTTTGACCTAGTTCACC 59.591 44.000 0.00 0.00 0.00 4.02
1694 1833 4.165372 AGTTTTTGACCTAGTTCACCCTCA 59.835 41.667 0.00 0.00 0.00 3.86
1837 2099 4.307032 AGTAATGTGAAATGTCCTGGCT 57.693 40.909 0.00 0.00 0.00 4.75
1854 2116 1.736681 GGCTAGCTTTGCTTCACAGAG 59.263 52.381 15.72 0.00 40.44 3.35
1859 2121 2.965477 CTTTGCTTCACAGAGCTGAC 57.035 50.000 4.21 0.00 43.11 3.51
1866 2128 1.586422 TCACAGAGCTGACACAAAGC 58.414 50.000 4.21 0.00 41.15 3.51
2155 2450 6.988580 TGCTAGTTGTCATTCTAGAATGGATG 59.011 38.462 34.37 18.49 46.08 3.51
2307 2832 1.739466 CTGTATGCGCACAATTCTGGT 59.261 47.619 14.90 0.00 0.00 4.00
2338 2863 3.198200 TGCTTTATGGCTGATTTGGCAAT 59.802 39.130 0.00 0.00 45.43 3.56
2439 2964 4.293415 CAACTGAAGTTTCTGGCATCAAC 58.707 43.478 0.00 0.00 35.83 3.18
2452 2977 1.129998 GCATCAACTAGCACTGCTGTG 59.870 52.381 18.54 18.54 46.37 3.66
2478 3003 3.243501 GCAACTGAAGTTTCTGGCATCAA 60.244 43.478 0.00 0.00 35.83 2.57
2571 3106 2.952273 GTGGCGTCACAAAAACCAC 58.048 52.632 16.80 0.80 43.57 4.16
2704 3306 6.819397 ACTTTCTTAAGTTTGCATCTACCC 57.181 37.500 1.63 0.00 41.85 3.69
3182 5554 6.806739 GTGTATTGAAAAACTAGGCCATGTTC 59.193 38.462 5.01 0.00 0.00 3.18
3183 5555 4.497473 TTGAAAAACTAGGCCATGTTCG 57.503 40.909 5.01 0.00 0.00 3.95
3282 5658 3.607741 TCGCCCGGTTTCATTAAACATA 58.392 40.909 0.00 0.00 45.68 2.29
3304 5681 7.344612 ACATAATGGTAGACAGATTGGTAGTGA 59.655 37.037 0.00 0.00 0.00 3.41
3341 5718 4.589908 TCCTTTCAAATCCAGTTCTAGCC 58.410 43.478 0.00 0.00 0.00 3.93
3439 5822 4.665451 TGGTTCCTGATGATCATTGTTGT 58.335 39.130 10.14 0.00 0.00 3.32
3565 5967 9.104965 GACGATAAGTATCTCATAGCTACATCT 57.895 37.037 0.00 0.00 0.00 2.90
3590 5992 5.195940 AGCAACCACTATGTGCTTATCATT 58.804 37.500 0.00 0.00 31.02 2.57
3631 6033 4.322953 CCTGCTGATTTGCCAATTAGGTTT 60.323 41.667 4.73 0.00 40.61 3.27
3639 6041 4.103365 TGCCAATTAGGTTTGTAATGCG 57.897 40.909 0.00 0.00 40.61 4.73
3643 6045 5.513849 GCCAATTAGGTTTGTAATGCGTAAC 59.486 40.000 0.00 0.00 40.61 2.50
3908 6312 3.215975 AGGAGGTACGTATCTGAAGCTC 58.784 50.000 14.37 8.75 36.09 4.09
3956 6374 2.483876 CTTCGACTGTGTGGACATGTT 58.516 47.619 0.00 0.00 0.00 2.71
4012 6446 5.163237 TGGCCTACCATATCAACTAGTTTCC 60.163 44.000 5.07 0.00 42.67 3.13
4045 6479 1.535437 GCACTTAATGATGCTGCAGCC 60.535 52.381 34.64 21.13 41.18 4.85
4081 6515 0.685458 AAGCATGGTTCCCTGCATCC 60.685 55.000 18.23 0.00 40.88 3.51
4086 6520 2.323999 TGGTTCCCTGCATCCAAAAT 57.676 45.000 0.00 0.00 0.00 1.82
4185 6627 8.500753 AAAAAGGTAGGGTTTTGTTTCAAATC 57.499 30.769 0.00 0.00 0.00 2.17
4187 6629 4.279922 AGGTAGGGTTTTGTTTCAAATCGG 59.720 41.667 0.00 0.00 0.00 4.18
4190 6632 3.118592 AGGGTTTTGTTTCAAATCGGCAA 60.119 39.130 0.00 0.00 0.00 4.52
4196 6638 7.382759 GGTTTTGTTTCAAATCGGCAATAGTAA 59.617 33.333 0.00 0.00 0.00 2.24
4205 6647 5.917541 ATCGGCAATAGTAAATAACACCG 57.082 39.130 0.00 0.00 39.44 4.94
4206 6648 5.008619 TCGGCAATAGTAAATAACACCGA 57.991 39.130 0.00 0.00 44.20 4.69
4213 6655 7.254795 GCAATAGTAAATAACACCGATCTGCTT 60.255 37.037 0.00 0.00 0.00 3.91
4221 6663 3.589988 ACACCGATCTGCTTTACTTCTG 58.410 45.455 0.00 0.00 0.00 3.02
4223 6665 2.234908 ACCGATCTGCTTTACTTCTGCT 59.765 45.455 0.00 0.00 0.00 4.24
4225 6667 3.063180 CCGATCTGCTTTACTTCTGCTTG 59.937 47.826 0.00 0.00 0.00 4.01
4233 6675 4.152580 GCTTTACTTCTGCTTGGTGTAGAC 59.847 45.833 0.00 0.00 37.14 2.59
4258 6700 5.362556 AAATTTCTGATCACTTGTCACCG 57.637 39.130 0.00 0.00 0.00 4.94
4499 6947 2.287977 AACCCAGCAAGTCTAAACCC 57.712 50.000 0.00 0.00 0.00 4.11
4565 7030 4.080129 ACATGTTAATCCACCATCTGAGCT 60.080 41.667 0.00 0.00 0.00 4.09
4624 7089 0.179045 CTGTAAGAGGGGCGAATGGG 60.179 60.000 0.00 0.00 34.07 4.00
4695 7179 1.002087 GTCGTCTGGTGTCCCATTTCT 59.998 52.381 0.00 0.00 40.90 2.52
4849 7348 4.460263 TGGCGGCTTGTATAATCTTTCAT 58.540 39.130 11.43 0.00 0.00 2.57
4850 7349 4.887071 TGGCGGCTTGTATAATCTTTCATT 59.113 37.500 11.43 0.00 0.00 2.57
4851 7350 5.008613 TGGCGGCTTGTATAATCTTTCATTC 59.991 40.000 11.43 0.00 0.00 2.67
4852 7351 5.008613 GGCGGCTTGTATAATCTTTCATTCA 59.991 40.000 0.00 0.00 0.00 2.57
4855 7354 7.679638 GCGGCTTGTATAATCTTTCATTCAAGT 60.680 37.037 0.00 0.00 34.11 3.16
4856 7355 8.184192 CGGCTTGTATAATCTTTCATTCAAGTT 58.816 33.333 0.00 0.00 34.11 2.66
4857 7356 9.294030 GGCTTGTATAATCTTTCATTCAAGTTG 57.706 33.333 0.00 0.00 34.11 3.16
4858 7357 9.294030 GCTTGTATAATCTTTCATTCAAGTTGG 57.706 33.333 2.34 0.00 34.11 3.77
4859 7358 9.294030 CTTGTATAATCTTTCATTCAAGTTGGC 57.706 33.333 2.34 0.00 29.75 4.52
4860 7359 8.347004 TGTATAATCTTTCATTCAAGTTGGCA 57.653 30.769 2.34 0.00 0.00 4.92
4862 7361 3.624326 TCTTTCATTCAAGTTGGCACG 57.376 42.857 2.34 0.00 0.00 5.34
4864 7363 3.003275 TCTTTCATTCAAGTTGGCACGAC 59.997 43.478 2.34 0.00 0.00 4.34
4888 7394 2.865598 ATCTGGCCTCATCCGCGAG 61.866 63.158 8.23 0.00 33.77 5.03
4906 7412 2.223456 CGAGTCGACTGAAGATCTGCAT 60.223 50.000 25.58 0.00 0.00 3.96
4929 7435 1.523758 GGAGCAGTTCGAAATGGTGT 58.476 50.000 31.74 0.30 34.64 4.16
4945 7451 3.312890 TGGTGTCCCATTTTGGATGTTT 58.687 40.909 0.00 0.00 40.96 2.83
4982 7488 2.551459 GCAATCCAGGATATGTGCTCAC 59.449 50.000 15.04 0.00 0.00 3.51
5054 7560 8.080083 AGTTTACGTCACTCATTAATCGTTTT 57.920 30.769 0.00 0.00 33.70 2.43
5062 7568 9.314501 GTCACTCATTAATCGTTTTAAGTTGTC 57.685 33.333 0.00 0.00 0.00 3.18
5089 7595 6.151144 AGACTTCACTTATTTGTTATGGTGGC 59.849 38.462 0.00 0.00 0.00 5.01
5090 7596 5.772672 ACTTCACTTATTTGTTATGGTGGCA 59.227 36.000 0.00 0.00 0.00 4.92
5092 7598 6.206395 TCACTTATTTGTTATGGTGGCATG 57.794 37.500 0.00 0.00 0.00 4.06
5093 7599 5.714333 TCACTTATTTGTTATGGTGGCATGT 59.286 36.000 0.00 0.00 0.00 3.21
5094 7600 6.210385 TCACTTATTTGTTATGGTGGCATGTT 59.790 34.615 0.00 0.00 0.00 2.71
5095 7601 6.310956 CACTTATTTGTTATGGTGGCATGTTG 59.689 38.462 0.00 0.00 0.00 3.33
5096 7602 4.888326 ATTTGTTATGGTGGCATGTTGT 57.112 36.364 0.00 0.00 0.00 3.32
5098 7604 2.868899 TGTTATGGTGGCATGTTGTGA 58.131 42.857 0.00 0.00 0.00 3.58
5099 7605 2.556189 TGTTATGGTGGCATGTTGTGAC 59.444 45.455 0.00 0.00 35.91 3.67
5100 7606 2.819608 GTTATGGTGGCATGTTGTGACT 59.180 45.455 0.00 0.00 36.52 3.41
5101 7607 1.250328 ATGGTGGCATGTTGTGACTG 58.750 50.000 0.00 0.00 36.52 3.51
5102 7608 0.822944 TGGTGGCATGTTGTGACTGG 60.823 55.000 0.00 0.00 36.52 4.00
5103 7609 1.526575 GGTGGCATGTTGTGACTGGG 61.527 60.000 0.00 0.00 36.52 4.45
5104 7610 0.823356 GTGGCATGTTGTGACTGGGT 60.823 55.000 0.00 0.00 36.52 4.51
5105 7611 0.106268 TGGCATGTTGTGACTGGGTT 60.106 50.000 0.00 0.00 36.52 4.11
5106 7612 1.039856 GGCATGTTGTGACTGGGTTT 58.960 50.000 0.00 0.00 31.05 3.27
5107 7613 1.269726 GGCATGTTGTGACTGGGTTTG 60.270 52.381 0.00 0.00 31.05 2.93
5108 7614 1.680735 GCATGTTGTGACTGGGTTTGA 59.319 47.619 0.00 0.00 0.00 2.69
5109 7615 2.100584 GCATGTTGTGACTGGGTTTGAA 59.899 45.455 0.00 0.00 0.00 2.69
5110 7616 3.705604 CATGTTGTGACTGGGTTTGAAC 58.294 45.455 0.00 0.00 0.00 3.18
5111 7617 3.080300 TGTTGTGACTGGGTTTGAACT 57.920 42.857 0.00 0.00 0.00 3.01
5112 7618 3.426615 TGTTGTGACTGGGTTTGAACTT 58.573 40.909 0.00 0.00 0.00 2.66
5113 7619 3.829601 TGTTGTGACTGGGTTTGAACTTT 59.170 39.130 0.00 0.00 0.00 2.66
5114 7620 4.173256 GTTGTGACTGGGTTTGAACTTTG 58.827 43.478 0.00 0.00 0.00 2.77
5115 7621 3.691575 TGTGACTGGGTTTGAACTTTGA 58.308 40.909 0.00 0.00 0.00 2.69
5116 7622 4.082845 TGTGACTGGGTTTGAACTTTGAA 58.917 39.130 0.00 0.00 0.00 2.69
5117 7623 4.157656 TGTGACTGGGTTTGAACTTTGAAG 59.842 41.667 0.00 0.00 0.00 3.02
5118 7624 3.699038 TGACTGGGTTTGAACTTTGAAGG 59.301 43.478 0.00 0.00 0.00 3.46
5119 7625 2.430694 ACTGGGTTTGAACTTTGAAGGC 59.569 45.455 0.00 0.00 0.00 4.35
5122 7628 2.224042 GGGTTTGAACTTTGAAGGCTGG 60.224 50.000 0.00 0.00 0.00 4.85
5129 7635 2.572290 ACTTTGAAGGCTGGTGTGTAC 58.428 47.619 0.00 0.00 0.00 2.90
5132 7638 2.949177 TGAAGGCTGGTGTGTACAAT 57.051 45.000 0.00 0.00 0.00 2.71
5137 7643 2.158682 AGGCTGGTGTGTACAATTCACA 60.159 45.455 14.80 0.00 42.41 3.58
5149 7655 3.489355 ACAATTCACACTCATTGCCTGA 58.511 40.909 0.00 0.00 34.26 3.86
5150 7656 3.890756 ACAATTCACACTCATTGCCTGAA 59.109 39.130 0.00 0.00 34.26 3.02
5151 7657 4.525487 ACAATTCACACTCATTGCCTGAAT 59.475 37.500 0.00 0.00 34.26 2.57
5152 7658 5.711506 ACAATTCACACTCATTGCCTGAATA 59.288 36.000 0.00 0.00 34.26 1.75
5153 7659 6.127814 ACAATTCACACTCATTGCCTGAATAG 60.128 38.462 0.00 0.00 34.26 1.73
5155 7661 3.011818 CACACTCATTGCCTGAATAGCA 58.988 45.455 0.00 0.00 38.81 3.49
5157 7663 3.276857 CACTCATTGCCTGAATAGCAGT 58.723 45.455 0.00 0.00 43.33 4.40
5160 7666 2.025981 TCATTGCCTGAATAGCAGTGGT 60.026 45.455 8.15 0.00 45.14 4.16
5161 7667 3.199727 TCATTGCCTGAATAGCAGTGGTA 59.800 43.478 4.19 4.19 45.14 3.25
5162 7668 2.691409 TGCCTGAATAGCAGTGGTAC 57.309 50.000 3.73 0.00 43.33 3.34
5163 7669 2.187958 TGCCTGAATAGCAGTGGTACT 58.812 47.619 3.73 0.00 43.33 2.73
5164 7670 3.371034 TGCCTGAATAGCAGTGGTACTA 58.629 45.455 3.73 0.00 43.33 1.82
5165 7671 3.132289 TGCCTGAATAGCAGTGGTACTAC 59.868 47.826 3.73 0.19 43.33 2.73
5166 7672 3.385111 GCCTGAATAGCAGTGGTACTACT 59.615 47.826 5.98 5.98 43.33 2.57
5167 7673 4.500035 GCCTGAATAGCAGTGGTACTACTC 60.500 50.000 9.21 4.98 43.33 2.59
5168 7674 4.645136 CCTGAATAGCAGTGGTACTACTCA 59.355 45.833 9.21 2.96 43.33 3.41
5169 7675 5.450688 CCTGAATAGCAGTGGTACTACTCAC 60.451 48.000 9.21 4.93 43.33 3.51
5172 7678 2.171840 AGCAGTGGTACTACTCACAGG 58.828 52.381 9.21 0.00 36.43 4.00
5173 7679 2.168496 GCAGTGGTACTACTCACAGGA 58.832 52.381 9.21 0.00 36.43 3.86
5174 7680 2.094649 GCAGTGGTACTACTCACAGGAC 60.095 54.545 9.21 0.00 36.43 3.85
5175 7681 3.154710 CAGTGGTACTACTCACAGGACA 58.845 50.000 9.21 0.00 36.43 4.02
5176 7682 3.191581 CAGTGGTACTACTCACAGGACAG 59.808 52.174 9.21 0.00 36.43 3.51
5177 7683 3.074094 AGTGGTACTACTCACAGGACAGA 59.926 47.826 5.98 0.00 36.43 3.41
5178 7684 3.825014 GTGGTACTACTCACAGGACAGAA 59.175 47.826 1.48 0.00 30.20 3.02
5179 7685 4.280174 GTGGTACTACTCACAGGACAGAAA 59.720 45.833 1.48 0.00 30.20 2.52
5180 7686 4.897076 TGGTACTACTCACAGGACAGAAAA 59.103 41.667 0.00 0.00 30.20 2.29
5181 7687 5.010719 TGGTACTACTCACAGGACAGAAAAG 59.989 44.000 0.00 0.00 30.20 2.27
5182 7688 5.243283 GGTACTACTCACAGGACAGAAAAGA 59.757 44.000 0.00 0.00 30.20 2.52
5183 7689 5.203060 ACTACTCACAGGACAGAAAAGAC 57.797 43.478 0.00 0.00 0.00 3.01
5184 7690 3.477210 ACTCACAGGACAGAAAAGACC 57.523 47.619 0.00 0.00 0.00 3.85
5185 7691 2.771943 ACTCACAGGACAGAAAAGACCA 59.228 45.455 0.00 0.00 0.00 4.02
5186 7692 3.392616 ACTCACAGGACAGAAAAGACCAT 59.607 43.478 0.00 0.00 0.00 3.55
5187 7693 3.743521 TCACAGGACAGAAAAGACCATG 58.256 45.455 0.00 0.00 0.00 3.66
5188 7694 2.816087 CACAGGACAGAAAAGACCATGG 59.184 50.000 11.19 11.19 0.00 3.66
5189 7695 1.815003 CAGGACAGAAAAGACCATGGC 59.185 52.381 13.04 4.70 0.00 4.40
5190 7696 1.707427 AGGACAGAAAAGACCATGGCT 59.293 47.619 13.04 7.31 0.00 4.75
5191 7697 2.912956 AGGACAGAAAAGACCATGGCTA 59.087 45.455 13.04 0.00 0.00 3.93
5192 7698 3.054802 AGGACAGAAAAGACCATGGCTAG 60.055 47.826 13.04 2.14 0.00 3.42
5193 7699 3.055094 GGACAGAAAAGACCATGGCTAGA 60.055 47.826 13.04 0.00 0.00 2.43
5194 7700 4.565652 GGACAGAAAAGACCATGGCTAGAA 60.566 45.833 13.04 0.00 0.00 2.10
5195 7701 4.327680 ACAGAAAAGACCATGGCTAGAAC 58.672 43.478 13.04 0.00 0.00 3.01
5196 7702 4.042187 ACAGAAAAGACCATGGCTAGAACT 59.958 41.667 13.04 2.33 0.00 3.01
5197 7703 5.006386 CAGAAAAGACCATGGCTAGAACTT 58.994 41.667 13.04 5.46 0.00 2.66
5198 7704 6.173339 CAGAAAAGACCATGGCTAGAACTTA 58.827 40.000 13.04 0.00 0.00 2.24
5199 7705 6.825721 CAGAAAAGACCATGGCTAGAACTTAT 59.174 38.462 13.04 0.00 0.00 1.73
5200 7706 7.337942 CAGAAAAGACCATGGCTAGAACTTATT 59.662 37.037 13.04 5.85 0.00 1.40
5201 7707 7.890655 AGAAAAGACCATGGCTAGAACTTATTT 59.109 33.333 13.04 5.00 0.00 1.40
5202 7708 9.174166 GAAAAGACCATGGCTAGAACTTATTTA 57.826 33.333 13.04 0.00 0.00 1.40
5203 7709 8.507524 AAAGACCATGGCTAGAACTTATTTAC 57.492 34.615 13.04 0.00 0.00 2.01
5204 7710 6.592870 AGACCATGGCTAGAACTTATTTACC 58.407 40.000 13.04 0.00 0.00 2.85
5205 7711 6.157994 AGACCATGGCTAGAACTTATTTACCA 59.842 38.462 13.04 0.00 0.00 3.25
5206 7712 6.120220 ACCATGGCTAGAACTTATTTACCAC 58.880 40.000 13.04 0.00 0.00 4.16
5207 7713 6.119536 CCATGGCTAGAACTTATTTACCACA 58.880 40.000 0.00 0.00 0.00 4.17
5208 7714 6.601613 CCATGGCTAGAACTTATTTACCACAA 59.398 38.462 0.00 0.00 0.00 3.33
5209 7715 7.201732 CCATGGCTAGAACTTATTTACCACAAG 60.202 40.741 0.00 0.00 0.00 3.16
5210 7716 5.646360 TGGCTAGAACTTATTTACCACAAGC 59.354 40.000 0.00 0.00 0.00 4.01
5211 7717 5.066117 GGCTAGAACTTATTTACCACAAGCC 59.934 44.000 0.00 0.00 38.00 4.35
5212 7718 5.066117 GCTAGAACTTATTTACCACAAGCCC 59.934 44.000 0.00 0.00 0.00 5.19
5213 7719 5.256806 AGAACTTATTTACCACAAGCCCT 57.743 39.130 0.00 0.00 0.00 5.19
5214 7720 5.254115 AGAACTTATTTACCACAAGCCCTC 58.746 41.667 0.00 0.00 0.00 4.30
5215 7721 3.606687 ACTTATTTACCACAAGCCCTCG 58.393 45.455 0.00 0.00 0.00 4.63
5216 7722 2.702592 TATTTACCACAAGCCCTCGG 57.297 50.000 0.00 0.00 0.00 4.63
5233 7739 3.527427 GCTTAATGCCACCGCCCC 61.527 66.667 0.00 0.00 35.15 5.80
5234 7740 2.275418 CTTAATGCCACCGCCCCT 59.725 61.111 0.00 0.00 0.00 4.79
5235 7741 2.044451 TTAATGCCACCGCCCCTG 60.044 61.111 0.00 0.00 0.00 4.45
5236 7742 2.550699 CTTAATGCCACCGCCCCTGA 62.551 60.000 0.00 0.00 0.00 3.86
5237 7743 2.550699 TTAATGCCACCGCCCCTGAG 62.551 60.000 0.00 0.00 0.00 3.35
5247 7753 3.625897 CCCCTGAGCGGTGTGTCA 61.626 66.667 0.00 0.00 0.00 3.58
5248 7754 2.425592 CCCTGAGCGGTGTGTCAA 59.574 61.111 0.00 0.00 0.00 3.18
5256 7762 1.968017 CGGTGTGTCAATGCCTGCT 60.968 57.895 0.00 0.00 0.00 4.24
5291 7797 0.400594 GTAGCCAGTTGAAGGGGTGT 59.599 55.000 0.00 0.00 36.15 4.16
5293 7799 1.150536 GCCAGTTGAAGGGGTGTGA 59.849 57.895 0.00 0.00 0.00 3.58
5294 7800 1.172812 GCCAGTTGAAGGGGTGTGAC 61.173 60.000 0.00 0.00 0.00 3.67
5356 7867 1.026182 TGTTGGTGCGCTGGATCATC 61.026 55.000 9.73 0.00 0.00 2.92
5378 7889 2.125633 GGAGCCCTCCGTCGAAAC 60.126 66.667 0.00 0.00 40.36 2.78
5388 7899 2.935955 GTCGAAACGTGCCACAGG 59.064 61.111 0.00 0.00 0.00 4.00
5406 7917 1.294659 GGTCGCTGCTCAACTCCTTG 61.295 60.000 0.00 0.00 0.00 3.61
5421 7932 1.303888 CTTGCTGGGCATGTCAGGT 60.304 57.895 16.19 0.00 38.76 4.00
5438 7949 0.107654 GGTTAGCGCTGTTCCTCCAT 60.108 55.000 22.90 0.00 0.00 3.41
5448 7959 0.329596 GTTCCTCCATGTTCCAGGCT 59.670 55.000 0.00 0.00 0.00 4.58
5451 7962 1.004745 TCCTCCATGTTCCAGGCTTTC 59.995 52.381 0.00 0.00 0.00 2.62
5452 7963 1.272092 CCTCCATGTTCCAGGCTTTCA 60.272 52.381 0.00 0.00 0.00 2.69
5453 7964 1.815003 CTCCATGTTCCAGGCTTTCAC 59.185 52.381 0.00 0.00 0.00 3.18
5454 7965 1.425066 TCCATGTTCCAGGCTTTCACT 59.575 47.619 0.00 0.00 0.00 3.41
5455 7966 1.542915 CCATGTTCCAGGCTTTCACTG 59.457 52.381 0.00 0.00 35.74 3.66
5456 7967 1.068055 CATGTTCCAGGCTTTCACTGC 60.068 52.381 0.00 0.00 34.65 4.40
5457 7968 0.183492 TGTTCCAGGCTTTCACTGCT 59.817 50.000 0.00 0.00 34.65 4.24
5478 7989 2.353889 TCTGCTCGACGTTACTGTATCC 59.646 50.000 0.00 0.00 0.00 2.59
5479 7990 1.402968 TGCTCGACGTTACTGTATCCC 59.597 52.381 0.00 0.00 0.00 3.85
5482 7993 2.290093 CTCGACGTTACTGTATCCCTCC 59.710 54.545 0.00 0.00 0.00 4.30
5486 7997 3.890147 GACGTTACTGTATCCCTCCTGAT 59.110 47.826 0.00 0.00 0.00 2.90
5488 7999 4.145807 CGTTACTGTATCCCTCCTGATCT 58.854 47.826 0.00 0.00 0.00 2.75
5491 8002 3.843422 ACTGTATCCCTCCTGATCTCAG 58.157 50.000 0.00 0.00 43.40 3.35
5506 8017 3.953712 TCTCAGTTTACTGCATTCGGA 57.046 42.857 5.00 0.00 43.46 4.55
5508 8019 4.183865 TCTCAGTTTACTGCATTCGGATG 58.816 43.478 0.00 0.00 43.46 3.51
5533 8044 1.010419 CAAACGCCAGGATTTGCAGC 61.010 55.000 0.00 0.00 0.00 5.25
5543 8054 0.316204 GATTTGCAGCTGCCAGTTGT 59.684 50.000 34.64 15.17 41.18 3.32
5553 8064 1.675641 GCCAGTTGTAGCAGGGTGG 60.676 63.158 0.00 0.00 0.00 4.61
5554 8065 1.675641 CCAGTTGTAGCAGGGTGGC 60.676 63.158 0.00 0.00 0.00 5.01
5555 8066 1.073025 CAGTTGTAGCAGGGTGGCA 59.927 57.895 0.00 0.00 35.83 4.92
5556 8067 0.322816 CAGTTGTAGCAGGGTGGCAT 60.323 55.000 0.00 0.00 35.83 4.40
5557 8068 0.322816 AGTTGTAGCAGGGTGGCATG 60.323 55.000 0.00 0.00 35.83 4.06
5571 8088 0.249322 GGCATGGCATGTGCATCTTC 60.249 55.000 26.94 8.89 44.25 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.605309 TGTAGTTGTAGATACACGAGAAGAGAA 59.395 37.037 0.00 0.00 35.64 2.87
1 2 7.064371 GTGTAGTTGTAGATACACGAGAAGAGA 59.936 40.741 0.00 0.00 41.53 3.10
2 3 7.181418 GTGTAGTTGTAGATACACGAGAAGAG 58.819 42.308 0.00 0.00 41.53 2.85
3 4 7.069852 GTGTAGTTGTAGATACACGAGAAGA 57.930 40.000 0.00 0.00 41.53 2.87
11 12 5.932619 ATGGCAGTGTAGTTGTAGATACA 57.067 39.130 0.00 0.00 0.00 2.29
12 13 5.913514 CGTATGGCAGTGTAGTTGTAGATAC 59.086 44.000 0.00 0.00 0.00 2.24
13 14 5.591472 ACGTATGGCAGTGTAGTTGTAGATA 59.409 40.000 0.00 0.00 0.00 1.98
14 15 4.401519 ACGTATGGCAGTGTAGTTGTAGAT 59.598 41.667 0.00 0.00 0.00 1.98
15 16 3.760151 ACGTATGGCAGTGTAGTTGTAGA 59.240 43.478 0.00 0.00 0.00 2.59
16 17 4.106029 ACGTATGGCAGTGTAGTTGTAG 57.894 45.455 0.00 0.00 0.00 2.74
17 18 5.840243 ATACGTATGGCAGTGTAGTTGTA 57.160 39.130 7.41 0.00 0.00 2.41
18 19 4.730949 ATACGTATGGCAGTGTAGTTGT 57.269 40.909 7.41 0.00 0.00 3.32
19 20 6.291427 CGTTTATACGTATGGCAGTGTAGTTG 60.291 42.308 18.37 0.00 42.72 3.16
20 21 5.745294 CGTTTATACGTATGGCAGTGTAGTT 59.255 40.000 18.37 0.00 42.72 2.24
21 22 5.276270 CGTTTATACGTATGGCAGTGTAGT 58.724 41.667 18.37 0.00 42.72 2.73
22 23 5.801176 CGTTTATACGTATGGCAGTGTAG 57.199 43.478 18.37 0.00 42.72 2.74
40 41 8.967918 TCAGTATATAAGCTCCTATATGCGTTT 58.032 33.333 7.82 0.00 34.10 3.60
41 42 8.521170 TCAGTATATAAGCTCCTATATGCGTT 57.479 34.615 7.82 0.00 34.10 4.84
42 43 8.521170 TTCAGTATATAAGCTCCTATATGCGT 57.479 34.615 7.82 0.00 34.10 5.24
43 44 9.973450 AATTCAGTATATAAGCTCCTATATGCG 57.027 33.333 7.82 4.63 34.10 4.73
51 52 9.237846 GCAAAAACAATTCAGTATATAAGCTCC 57.762 33.333 0.00 0.00 0.00 4.70
52 53 9.787532 TGCAAAAACAATTCAGTATATAAGCTC 57.212 29.630 0.00 0.00 0.00 4.09
69 70 4.074970 ACCCAACATTGTTTGCAAAAACA 58.925 34.783 14.67 6.66 40.54 2.83
70 71 4.693538 ACCCAACATTGTTTGCAAAAAC 57.306 36.364 14.67 3.59 38.21 2.43
71 72 5.220931 GCATACCCAACATTGTTTGCAAAAA 60.221 36.000 14.67 5.49 38.68 1.94
72 73 4.274459 GCATACCCAACATTGTTTGCAAAA 59.726 37.500 14.67 0.00 38.68 2.44
73 74 3.812053 GCATACCCAACATTGTTTGCAAA 59.188 39.130 8.05 8.05 38.68 3.68
74 75 3.181462 TGCATACCCAACATTGTTTGCAA 60.181 39.130 18.61 0.00 43.26 4.08
75 76 2.366590 TGCATACCCAACATTGTTTGCA 59.633 40.909 17.51 17.51 43.74 4.08
76 77 3.037431 TGCATACCCAACATTGTTTGC 57.963 42.857 13.63 13.63 39.10 3.68
77 78 5.533533 CAATGCATACCCAACATTGTTTG 57.466 39.130 0.00 0.00 43.53 2.93
99 100 1.986882 AGCCTAATGCAAGGGTATGC 58.013 50.000 7.37 0.00 45.47 3.14
100 101 3.077359 GCTAGCCTAATGCAAGGGTATG 58.923 50.000 15.05 10.97 45.92 2.39
101 102 2.982488 AGCTAGCCTAATGCAAGGGTAT 59.018 45.455 15.05 1.26 45.92 2.73
102 103 2.368875 GAGCTAGCCTAATGCAAGGGTA 59.631 50.000 12.13 14.18 45.47 3.69
104 105 1.544314 GGAGCTAGCCTAATGCAAGGG 60.544 57.143 12.13 2.85 44.83 3.95
105 106 1.875576 CGGAGCTAGCCTAATGCAAGG 60.876 57.143 12.13 0.00 44.83 3.61
106 107 1.506493 CGGAGCTAGCCTAATGCAAG 58.494 55.000 12.13 0.00 44.83 4.01
107 108 3.686622 CGGAGCTAGCCTAATGCAA 57.313 52.632 12.13 0.00 44.83 4.08
121 122 1.903877 CCCATATAGCAGGGGCGGAG 61.904 65.000 0.00 0.00 42.54 4.63
122 123 1.918293 CCCATATAGCAGGGGCGGA 60.918 63.158 0.00 0.00 42.54 5.54
123 124 2.671070 CCCATATAGCAGGGGCGG 59.329 66.667 0.00 0.00 42.54 6.13
132 133 7.631183 GCATAATGCAAGGGTAGCCCATATAG 61.631 46.154 7.51 0.00 44.68 1.31
133 134 5.864992 GCATAATGCAAGGGTAGCCCATATA 60.865 44.000 7.51 1.35 44.68 0.86
134 135 5.114703 GCATAATGCAAGGGTAGCCCATAT 61.115 45.833 7.51 0.00 44.68 1.78
135 136 3.813957 GCATAATGCAAGGGTAGCCCATA 60.814 47.826 7.51 0.00 44.68 2.74
136 137 3.082725 GCATAATGCAAGGGTAGCCCAT 61.083 50.000 7.51 1.04 44.68 4.00
137 138 1.753847 GCATAATGCAAGGGTAGCCCA 60.754 52.381 7.51 0.00 44.68 5.36
138 139 0.961753 GCATAATGCAAGGGTAGCCC 59.038 55.000 7.51 0.00 44.26 5.19
166 167 1.639635 AAGTGCCCAGATAGCAGGGG 61.640 60.000 10.83 6.98 45.58 4.79
168 169 0.254178 ACAAGTGCCCAGATAGCAGG 59.746 55.000 0.00 0.00 41.87 4.85
169 170 1.661341 GACAAGTGCCCAGATAGCAG 58.339 55.000 0.00 0.00 41.87 4.24
170 171 0.253044 GGACAAGTGCCCAGATAGCA 59.747 55.000 0.00 0.00 38.08 3.49
171 172 0.811616 CGGACAAGTGCCCAGATAGC 60.812 60.000 0.00 0.00 0.00 2.97
214 215 4.532834 TGCCCAGAAAGTCAAGTAAACTT 58.467 39.130 0.00 0.00 38.59 2.66
216 217 4.911514 TTGCCCAGAAAGTCAAGTAAAC 57.088 40.909 0.00 0.00 0.00 2.01
370 374 9.571816 TTCCAAAATTCAGGCAAATTCTAAAAT 57.428 25.926 0.00 0.00 0.00 1.82
376 380 8.768019 GCTATATTCCAAAATTCAGGCAAATTC 58.232 33.333 0.00 0.00 0.00 2.17
379 383 7.123997 TGAGCTATATTCCAAAATTCAGGCAAA 59.876 33.333 0.00 0.00 0.00 3.68
384 388 7.572523 TGGTGAGCTATATTCCAAAATTCAG 57.427 36.000 0.00 0.00 0.00 3.02
392 396 7.855784 TCTAGATTTGGTGAGCTATATTCCA 57.144 36.000 0.00 0.00 0.00 3.53
393 397 9.561069 TTTTCTAGATTTGGTGAGCTATATTCC 57.439 33.333 0.00 0.00 0.00 3.01
513 519 8.274939 CGCATGAAATTTTTACAACTTGTGAAT 58.725 29.630 4.57 0.51 0.00 2.57
518 524 8.113062 TCAAACGCATGAAATTTTTACAACTTG 58.887 29.630 0.00 0.00 0.00 3.16
533 539 7.936950 TTTGTGAATATTTTCAAACGCATGA 57.063 28.000 0.00 0.00 43.29 3.07
614 620 6.595716 CAGGACGACTTCTATTTGATTTTCCT 59.404 38.462 0.00 0.00 0.00 3.36
647 653 6.874288 TTTTTAAATGCAGTTTTCCCATGG 57.126 33.333 4.05 4.14 0.00 3.66
667 673 9.070179 CCTTTTTGAAGATTCCATGGAATTTTT 57.930 29.630 34.93 29.87 43.98 1.94
668 674 8.219868 ACCTTTTTGAAGATTCCATGGAATTTT 58.780 29.630 34.93 33.71 43.98 1.82
669 675 7.748677 ACCTTTTTGAAGATTCCATGGAATTT 58.251 30.769 34.93 28.48 43.98 1.82
670 676 7.320384 ACCTTTTTGAAGATTCCATGGAATT 57.680 32.000 34.93 23.99 43.98 2.17
671 677 6.940430 ACCTTTTTGAAGATTCCATGGAAT 57.060 33.333 35.12 35.12 46.29 3.01
674 680 5.482006 GGAACCTTTTTGAAGATTCCATGG 58.518 41.667 4.97 4.97 36.44 3.66
703 709 6.290294 ACATGTAGTAGTTTTATCACCGGT 57.710 37.500 0.00 0.00 0.00 5.28
704 710 7.925703 CTACATGTAGTAGTTTTATCACCGG 57.074 40.000 22.48 0.00 44.24 5.28
765 830 6.128282 CCCTGTATATTTGCATATGTTCGGTC 60.128 42.308 4.29 0.00 0.00 4.79
785 850 4.464947 CTTTTTGTCTTTCTCCTCCCTGT 58.535 43.478 0.00 0.00 0.00 4.00
786 851 3.823304 CCTTTTTGTCTTTCTCCTCCCTG 59.177 47.826 0.00 0.00 0.00 4.45
788 853 4.075682 CTCCTTTTTGTCTTTCTCCTCCC 58.924 47.826 0.00 0.00 0.00 4.30
789 854 3.504134 GCTCCTTTTTGTCTTTCTCCTCC 59.496 47.826 0.00 0.00 0.00 4.30
823 890 0.759346 CCGCTATTAGTCCTTGGGCT 59.241 55.000 0.00 0.00 0.00 5.19
852 920 1.880027 AGTCCATTTTGTCCTCGCAAC 59.120 47.619 0.00 0.00 0.00 4.17
897 965 0.317854 GAGCAAGGGTTTTGACGCAC 60.318 55.000 0.00 0.00 0.00 5.34
1017 1100 1.077429 GCCCTTCTCCTTGCGGAAT 60.077 57.895 0.00 0.00 39.29 3.01
1354 1460 0.178068 GCGAATCCAGAGCCAACCTA 59.822 55.000 0.00 0.00 0.00 3.08
1417 1527 1.134965 GTGCTCTGTATCAGCTCCGTT 60.135 52.381 0.00 0.00 37.79 4.44
1489 1599 1.299976 GGCATCGAGGGTGGTCTTT 59.700 57.895 0.00 0.00 0.00 2.52
1633 1749 4.749245 AACAATTGCTAAGAAGGACACG 57.251 40.909 5.05 0.00 0.00 4.49
1677 1816 2.902608 ACATGAGGGTGAACTAGGTCA 58.097 47.619 6.32 6.32 0.00 4.02
1690 1829 6.234177 GGATACCAATAGAGGAAACATGAGG 58.766 44.000 0.00 0.00 0.00 3.86
1837 2099 2.037641 TCAGCTCTGTGAAGCAAAGCTA 59.962 45.455 0.00 0.00 45.00 3.32
1854 2116 0.109412 GCAGATGGCTTTGTGTCAGC 60.109 55.000 0.00 0.00 40.25 4.26
1859 2121 2.089201 TGAGATGCAGATGGCTTTGTG 58.911 47.619 0.00 0.00 45.15 3.33
1866 2128 0.463295 ACCGCTTGAGATGCAGATGG 60.463 55.000 0.00 0.00 0.00 3.51
2155 2450 3.991121 GTCTTACAGAGAGGCAGAACAAC 59.009 47.826 0.00 0.00 34.31 3.32
2338 2863 5.826601 TTGCAAGTGTTTCACAAGACATA 57.173 34.783 0.00 0.00 36.74 2.29
2452 2977 1.264288 CCAGAAACTTCAGTTGCCGAC 59.736 52.381 0.00 0.00 38.44 4.79
2690 3292 0.324943 AGTGCGGGTAGATGCAAACT 59.675 50.000 0.00 0.00 43.75 2.66
2704 3306 3.521560 TCATAAGCTTGAAGGTAGTGCG 58.478 45.455 9.86 0.00 0.00 5.34
3183 5555 3.068729 GCCCCGAGAAAGCATTGGC 62.069 63.158 0.00 0.00 41.61 4.52
3254 5626 0.321741 TGAAACCGGGCGATGCTTAA 60.322 50.000 6.32 0.00 0.00 1.85
3282 5658 6.814954 ATCACTACCAATCTGTCTACCATT 57.185 37.500 0.00 0.00 0.00 3.16
3341 5718 4.134379 ACATGTCAAGACTAGCCAGATG 57.866 45.455 0.00 0.00 0.00 2.90
3407 5790 7.066781 TGATCATCAGGAACCAGTGTACTATA 58.933 38.462 0.00 0.00 0.00 1.31
3408 5791 5.899547 TGATCATCAGGAACCAGTGTACTAT 59.100 40.000 0.00 0.00 0.00 2.12
3631 6033 7.894376 AGCTACTTAAAAGTTACGCATTACA 57.106 32.000 0.00 0.00 40.37 2.41
3908 6312 5.514274 AACATGGTGTTTAAGGTTCACAG 57.486 39.130 0.00 0.00 37.26 3.66
3937 6350 2.613026 AACATGTCCACACAGTCGAA 57.387 45.000 0.00 0.00 35.41 3.71
3956 6374 9.853555 CAAGGTGCACAATATAGAAATGTTTAA 57.146 29.630 20.43 0.00 0.00 1.52
3975 6393 0.680921 TAGGCCAATCTGCAAGGTGC 60.681 55.000 5.01 0.00 45.29 5.01
4012 6446 4.696877 TCATTAAGTGCACCAGAGACAATG 59.303 41.667 14.63 12.04 0.00 2.82
4045 6479 6.127535 ACCATGCTTCCAAATCATACTTCTTG 60.128 38.462 0.00 0.00 0.00 3.02
4105 6539 7.262772 CCTGATAATCTGTGCAATTTGAACAT 58.737 34.615 10.65 0.00 34.92 2.71
4185 6627 5.694910 AGATCGGTGTTATTTACTATTGCCG 59.305 40.000 0.00 0.00 38.20 5.69
4187 6629 6.202954 AGCAGATCGGTGTTATTTACTATTGC 59.797 38.462 0.00 0.00 0.00 3.56
4190 6632 9.257651 GTAAAGCAGATCGGTGTTATTTACTAT 57.742 33.333 0.00 0.00 32.07 2.12
4196 6638 6.313905 CAGAAGTAAAGCAGATCGGTGTTATT 59.686 38.462 0.00 0.00 0.00 1.40
4205 6647 4.006319 ACCAAGCAGAAGTAAAGCAGATC 58.994 43.478 0.00 0.00 0.00 2.75
4206 6648 3.755378 CACCAAGCAGAAGTAAAGCAGAT 59.245 43.478 0.00 0.00 0.00 2.90
4213 6655 4.267349 GGTCTACACCAAGCAGAAGTAA 57.733 45.455 0.00 0.00 43.17 2.24
4225 6667 6.431234 AGTGATCAGAAATTTTGGTCTACACC 59.569 38.462 0.00 0.00 44.10 4.16
4233 6675 5.922544 GGTGACAAGTGATCAGAAATTTTGG 59.077 40.000 0.00 0.00 0.00 3.28
4240 6682 1.344438 AGCGGTGACAAGTGATCAGAA 59.656 47.619 0.00 0.00 0.00 3.02
4258 6700 2.997303 TGCAATTTGAACATGCATCAGC 59.003 40.909 0.00 0.00 44.52 4.26
4377 6819 2.257353 GCACTTCAACGCCATCCTT 58.743 52.632 0.00 0.00 0.00 3.36
4397 6839 0.315886 TGAATGGCTGCAGTGCTTTG 59.684 50.000 17.60 7.76 0.00 2.77
4499 6947 3.057946 GCAAAGAGGAGCAAACTACCTTG 60.058 47.826 0.00 0.00 33.89 3.61
4565 7030 6.208599 CCCTGCAAGTAGAGGACAAAATAAAA 59.791 38.462 0.00 0.00 0.00 1.52
4624 7089 7.807977 TTATCTGCCTGATGGAAATAAGTTC 57.192 36.000 0.00 0.00 36.65 3.01
4695 7179 5.230306 CGCCACGATGTCTTTTTGTTAAAAA 59.770 36.000 0.00 0.00 37.99 1.94
4741 7238 5.072058 TGGTTACCCTAGCTTTGTAACTTCA 59.928 40.000 21.81 14.52 42.37 3.02
4849 7348 0.817634 CTGGGTCGTGCCAACTTGAA 60.818 55.000 0.00 0.00 39.65 2.69
4850 7349 1.227823 CTGGGTCGTGCCAACTTGA 60.228 57.895 0.00 0.00 39.65 3.02
4851 7350 2.908073 GCTGGGTCGTGCCAACTTG 61.908 63.158 1.70 0.00 39.65 3.16
4852 7351 2.594592 GCTGGGTCGTGCCAACTT 60.595 61.111 1.70 0.00 39.65 2.66
4855 7354 2.359850 GATGCTGGGTCGTGCCAA 60.360 61.111 1.70 0.00 39.65 4.52
4856 7355 3.321648 AGATGCTGGGTCGTGCCA 61.322 61.111 1.70 0.00 39.65 4.92
4857 7356 2.821366 CAGATGCTGGGTCGTGCC 60.821 66.667 0.00 0.00 0.00 5.01
4888 7394 2.200067 CCATGCAGATCTTCAGTCGAC 58.800 52.381 7.70 7.70 0.00 4.20
4906 7412 1.003839 ATTTCGAACTGCTCCGCCA 60.004 52.632 0.00 0.00 0.00 5.69
4929 7435 6.889198 TGTAAACAAAACATCCAAAATGGGA 58.111 32.000 0.00 0.00 42.21 4.37
4945 7451 6.259608 CCTGGATTGCAATGTTTTGTAAACAA 59.740 34.615 18.59 0.00 40.20 2.83
5062 7568 8.883731 CCACCATAACAAATAAGTGAAGTCTAG 58.116 37.037 0.00 0.00 0.00 2.43
5064 7570 6.151144 GCCACCATAACAAATAAGTGAAGTCT 59.849 38.462 0.00 0.00 0.00 3.24
5089 7595 3.381272 AGTTCAAACCCAGTCACAACATG 59.619 43.478 0.00 0.00 0.00 3.21
5090 7596 3.631250 AGTTCAAACCCAGTCACAACAT 58.369 40.909 0.00 0.00 0.00 2.71
5092 7598 4.082463 TCAAAGTTCAAACCCAGTCACAAC 60.082 41.667 0.00 0.00 0.00 3.32
5093 7599 4.082845 TCAAAGTTCAAACCCAGTCACAA 58.917 39.130 0.00 0.00 0.00 3.33
5094 7600 3.691575 TCAAAGTTCAAACCCAGTCACA 58.308 40.909 0.00 0.00 0.00 3.58
5095 7601 4.440112 CCTTCAAAGTTCAAACCCAGTCAC 60.440 45.833 0.00 0.00 0.00 3.67
5096 7602 3.699038 CCTTCAAAGTTCAAACCCAGTCA 59.301 43.478 0.00 0.00 0.00 3.41
5098 7604 2.430694 GCCTTCAAAGTTCAAACCCAGT 59.569 45.455 0.00 0.00 0.00 4.00
5099 7605 2.695147 AGCCTTCAAAGTTCAAACCCAG 59.305 45.455 0.00 0.00 0.00 4.45
5100 7606 2.430332 CAGCCTTCAAAGTTCAAACCCA 59.570 45.455 0.00 0.00 0.00 4.51
5101 7607 2.224042 CCAGCCTTCAAAGTTCAAACCC 60.224 50.000 0.00 0.00 0.00 4.11
5102 7608 2.430694 ACCAGCCTTCAAAGTTCAAACC 59.569 45.455 0.00 0.00 0.00 3.27
5103 7609 3.119137 ACACCAGCCTTCAAAGTTCAAAC 60.119 43.478 0.00 0.00 0.00 2.93
5104 7610 3.096092 ACACCAGCCTTCAAAGTTCAAA 58.904 40.909 0.00 0.00 0.00 2.69
5105 7611 2.426738 CACACCAGCCTTCAAAGTTCAA 59.573 45.455 0.00 0.00 0.00 2.69
5106 7612 2.023673 CACACCAGCCTTCAAAGTTCA 58.976 47.619 0.00 0.00 0.00 3.18
5107 7613 2.024414 ACACACCAGCCTTCAAAGTTC 58.976 47.619 0.00 0.00 0.00 3.01
5108 7614 2.143876 ACACACCAGCCTTCAAAGTT 57.856 45.000 0.00 0.00 0.00 2.66
5109 7615 2.092646 TGTACACACCAGCCTTCAAAGT 60.093 45.455 0.00 0.00 0.00 2.66
5110 7616 2.571212 TGTACACACCAGCCTTCAAAG 58.429 47.619 0.00 0.00 0.00 2.77
5111 7617 2.719531 TGTACACACCAGCCTTCAAA 57.280 45.000 0.00 0.00 0.00 2.69
5112 7618 2.719531 TTGTACACACCAGCCTTCAA 57.280 45.000 0.00 0.00 0.00 2.69
5113 7619 2.949177 ATTGTACACACCAGCCTTCA 57.051 45.000 0.00 0.00 0.00 3.02
5114 7620 3.058224 GTGAATTGTACACACCAGCCTTC 60.058 47.826 0.00 0.00 38.05 3.46
5115 7621 2.884639 GTGAATTGTACACACCAGCCTT 59.115 45.455 0.00 0.00 38.05 4.35
5116 7622 2.158682 TGTGAATTGTACACACCAGCCT 60.159 45.455 11.36 0.00 42.20 4.58
5117 7623 2.226330 TGTGAATTGTACACACCAGCC 58.774 47.619 11.36 0.00 42.20 4.85
5129 7635 4.508461 TTCAGGCAATGAGTGTGAATTG 57.492 40.909 0.00 0.00 39.68 2.32
5132 7638 3.691118 GCTATTCAGGCAATGAGTGTGAA 59.309 43.478 0.00 0.00 39.68 3.18
5149 7655 4.402793 CCTGTGAGTAGTACCACTGCTATT 59.597 45.833 17.39 0.00 41.29 1.73
5150 7656 3.954904 CCTGTGAGTAGTACCACTGCTAT 59.045 47.826 17.39 0.00 41.29 2.97
5151 7657 3.009805 TCCTGTGAGTAGTACCACTGCTA 59.990 47.826 17.39 9.07 41.29 3.49
5152 7658 2.171840 CCTGTGAGTAGTACCACTGCT 58.828 52.381 17.39 0.00 43.92 4.24
5153 7659 2.094649 GTCCTGTGAGTAGTACCACTGC 60.095 54.545 17.39 0.00 34.57 4.40
5155 7661 3.074094 TCTGTCCTGTGAGTAGTACCACT 59.926 47.826 17.39 0.00 34.57 4.00
5157 7663 3.801307 TCTGTCCTGTGAGTAGTACCA 57.199 47.619 0.00 0.00 0.00 3.25
5160 7666 5.243283 GGTCTTTTCTGTCCTGTGAGTAGTA 59.757 44.000 0.00 0.00 0.00 1.82
5161 7667 4.039366 GGTCTTTTCTGTCCTGTGAGTAGT 59.961 45.833 0.00 0.00 0.00 2.73
5162 7668 4.039245 TGGTCTTTTCTGTCCTGTGAGTAG 59.961 45.833 0.00 0.00 0.00 2.57
5163 7669 3.964688 TGGTCTTTTCTGTCCTGTGAGTA 59.035 43.478 0.00 0.00 0.00 2.59
5164 7670 2.771943 TGGTCTTTTCTGTCCTGTGAGT 59.228 45.455 0.00 0.00 0.00 3.41
5165 7671 3.475566 TGGTCTTTTCTGTCCTGTGAG 57.524 47.619 0.00 0.00 0.00 3.51
5166 7672 3.496692 CCATGGTCTTTTCTGTCCTGTGA 60.497 47.826 2.57 0.00 0.00 3.58
5167 7673 2.816087 CCATGGTCTTTTCTGTCCTGTG 59.184 50.000 2.57 0.00 0.00 3.66
5168 7674 2.815589 GCCATGGTCTTTTCTGTCCTGT 60.816 50.000 14.67 0.00 0.00 4.00
5169 7675 1.815003 GCCATGGTCTTTTCTGTCCTG 59.185 52.381 14.67 0.00 0.00 3.86
5172 7678 4.207891 TCTAGCCATGGTCTTTTCTGTC 57.792 45.455 14.67 0.00 0.00 3.51
5173 7679 4.042187 AGTTCTAGCCATGGTCTTTTCTGT 59.958 41.667 14.67 0.00 0.00 3.41
5174 7680 4.583871 AGTTCTAGCCATGGTCTTTTCTG 58.416 43.478 14.67 0.00 0.00 3.02
5175 7681 4.917906 AGTTCTAGCCATGGTCTTTTCT 57.082 40.909 14.67 2.89 0.00 2.52
5176 7682 7.631717 AATAAGTTCTAGCCATGGTCTTTTC 57.368 36.000 14.67 0.95 0.00 2.29
5177 7683 8.957466 GTAAATAAGTTCTAGCCATGGTCTTTT 58.043 33.333 14.67 8.14 0.00 2.27
5178 7684 7.556635 GGTAAATAAGTTCTAGCCATGGTCTTT 59.443 37.037 14.67 4.73 0.00 2.52
5179 7685 7.054751 GGTAAATAAGTTCTAGCCATGGTCTT 58.945 38.462 14.67 10.66 0.00 3.01
5180 7686 6.157994 TGGTAAATAAGTTCTAGCCATGGTCT 59.842 38.462 14.67 13.35 0.00 3.85
5181 7687 6.260271 GTGGTAAATAAGTTCTAGCCATGGTC 59.740 42.308 14.67 5.80 0.00 4.02
5182 7688 6.120220 GTGGTAAATAAGTTCTAGCCATGGT 58.880 40.000 14.67 2.69 0.00 3.55
5183 7689 6.119536 TGTGGTAAATAAGTTCTAGCCATGG 58.880 40.000 7.63 7.63 0.00 3.66
5184 7690 7.624360 TTGTGGTAAATAAGTTCTAGCCATG 57.376 36.000 0.00 0.00 0.00 3.66
5185 7691 6.318900 GCTTGTGGTAAATAAGTTCTAGCCAT 59.681 38.462 0.00 0.00 0.00 4.40
5186 7692 5.646360 GCTTGTGGTAAATAAGTTCTAGCCA 59.354 40.000 0.00 0.00 0.00 4.75
5187 7693 5.066117 GGCTTGTGGTAAATAAGTTCTAGCC 59.934 44.000 0.00 0.00 35.93 3.93
5188 7694 5.066117 GGGCTTGTGGTAAATAAGTTCTAGC 59.934 44.000 0.00 0.00 0.00 3.42
5189 7695 6.415573 AGGGCTTGTGGTAAATAAGTTCTAG 58.584 40.000 0.00 0.00 0.00 2.43
5190 7696 6.382919 AGGGCTTGTGGTAAATAAGTTCTA 57.617 37.500 0.00 0.00 0.00 2.10
5191 7697 5.254115 GAGGGCTTGTGGTAAATAAGTTCT 58.746 41.667 0.00 0.00 0.00 3.01
5192 7698 4.094442 CGAGGGCTTGTGGTAAATAAGTTC 59.906 45.833 0.00 0.00 0.00 3.01
5193 7699 4.007659 CGAGGGCTTGTGGTAAATAAGTT 58.992 43.478 0.00 0.00 0.00 2.66
5194 7700 3.606687 CGAGGGCTTGTGGTAAATAAGT 58.393 45.455 0.00 0.00 0.00 2.24
5195 7701 2.943033 CCGAGGGCTTGTGGTAAATAAG 59.057 50.000 0.00 0.00 0.00 1.73
5196 7702 2.942306 GCCGAGGGCTTGTGGTAAATAA 60.942 50.000 0.00 0.00 46.69 1.40
5197 7703 1.407712 GCCGAGGGCTTGTGGTAAATA 60.408 52.381 0.00 0.00 46.69 1.40
5198 7704 0.679960 GCCGAGGGCTTGTGGTAAAT 60.680 55.000 0.00 0.00 46.69 1.40
5199 7705 1.302993 GCCGAGGGCTTGTGGTAAA 60.303 57.895 0.00 0.00 46.69 2.01
5200 7706 2.349755 GCCGAGGGCTTGTGGTAA 59.650 61.111 0.00 0.00 46.69 2.85
5216 7722 3.527427 GGGGCGGTGGCATTAAGC 61.527 66.667 0.00 0.00 42.47 3.09
5217 7723 2.120909 CAGGGGCGGTGGCATTAAG 61.121 63.158 0.00 0.00 42.47 1.85
5218 7724 2.044451 CAGGGGCGGTGGCATTAA 60.044 61.111 0.00 0.00 42.47 1.40
5219 7725 3.012119 TCAGGGGCGGTGGCATTA 61.012 61.111 0.00 0.00 42.47 1.90
5220 7726 4.431131 CTCAGGGGCGGTGGCATT 62.431 66.667 0.00 0.00 42.47 3.56
5231 7737 1.003355 ATTGACACACCGCTCAGGG 60.003 57.895 0.00 0.00 46.96 4.45
5233 7739 1.499056 GCATTGACACACCGCTCAG 59.501 57.895 0.00 0.00 0.00 3.35
5234 7740 1.965930 GGCATTGACACACCGCTCA 60.966 57.895 0.00 0.00 0.00 4.26
5235 7741 1.672356 AGGCATTGACACACCGCTC 60.672 57.895 0.00 0.00 0.00 5.03
5236 7742 1.968017 CAGGCATTGACACACCGCT 60.968 57.895 0.00 0.00 0.00 5.52
5237 7743 2.562912 CAGGCATTGACACACCGC 59.437 61.111 0.00 0.00 0.00 5.68
5238 7744 1.518056 AAGCAGGCATTGACACACCG 61.518 55.000 0.00 0.00 0.00 4.94
5239 7745 0.038892 CAAGCAGGCATTGACACACC 60.039 55.000 0.00 0.00 0.00 4.16
5240 7746 0.670162 ACAAGCAGGCATTGACACAC 59.330 50.000 9.39 0.00 0.00 3.82
5241 7747 0.669619 CACAAGCAGGCATTGACACA 59.330 50.000 9.39 0.00 0.00 3.72
5242 7748 0.953727 TCACAAGCAGGCATTGACAC 59.046 50.000 9.39 0.00 0.00 3.67
5243 7749 1.241165 CTCACAAGCAGGCATTGACA 58.759 50.000 9.39 0.00 0.00 3.58
5273 7779 0.400213 CACACCCCTTCAACTGGCTA 59.600 55.000 0.00 0.00 0.00 3.93
5279 7785 2.258726 GGCGTCACACCCCTTCAAC 61.259 63.158 0.00 0.00 0.00 3.18
5309 7820 3.478857 ACACACATCGAGGTAACCAAA 57.521 42.857 0.77 0.00 37.17 3.28
5311 7822 2.365941 TCAACACACATCGAGGTAACCA 59.634 45.455 0.77 0.00 37.17 3.67
5313 7824 4.495422 AGATCAACACACATCGAGGTAAC 58.505 43.478 0.77 0.00 0.00 2.50
5314 7825 4.801330 AGATCAACACACATCGAGGTAA 57.199 40.909 0.77 0.00 0.00 2.85
5315 7826 4.801330 AAGATCAACACACATCGAGGTA 57.199 40.909 0.77 0.00 0.00 3.08
5368 7879 2.659244 GTGGCACGTTTCGACGGA 60.659 61.111 0.00 0.00 37.45 4.69
5369 7880 2.938823 CTGTGGCACGTTTCGACGG 61.939 63.158 13.77 0.00 37.45 4.79
5370 7881 2.544359 CTGTGGCACGTTTCGACG 59.456 61.111 13.77 0.00 39.31 5.12
5371 7882 1.828331 GACCTGTGGCACGTTTCGAC 61.828 60.000 13.77 0.00 0.00 4.20
5372 7883 1.593209 GACCTGTGGCACGTTTCGA 60.593 57.895 13.77 0.00 0.00 3.71
5373 7884 2.935955 GACCTGTGGCACGTTTCG 59.064 61.111 13.77 0.53 0.00 3.46
5374 7885 2.935955 CGACCTGTGGCACGTTTC 59.064 61.111 13.77 7.56 0.00 2.78
5375 7886 3.276846 GCGACCTGTGGCACGTTT 61.277 61.111 13.77 0.00 34.31 3.60
5376 7887 4.235762 AGCGACCTGTGGCACGTT 62.236 61.111 13.77 0.00 36.74 3.99
5377 7888 4.969196 CAGCGACCTGTGGCACGT 62.969 66.667 13.77 5.42 36.74 4.49
5379 7890 4.996434 AGCAGCGACCTGTGGCAC 62.996 66.667 11.55 11.55 41.26 5.01
5380 7891 4.687215 GAGCAGCGACCTGTGGCA 62.687 66.667 7.04 0.00 41.26 4.92
5388 7899 1.905922 GCAAGGAGTTGAGCAGCGAC 61.906 60.000 0.00 0.00 35.46 5.19
5406 7917 1.379642 GCTAACCTGACATGCCCAGC 61.380 60.000 9.51 0.00 0.00 4.85
5421 7932 0.613260 ACATGGAGGAACAGCGCTAA 59.387 50.000 10.99 0.00 0.00 3.09
5438 7949 0.183492 AGCAGTGAAAGCCTGGAACA 59.817 50.000 0.00 0.00 0.00 3.18
5448 7959 0.664466 CGTCGAGCAGAGCAGTGAAA 60.664 55.000 0.00 0.00 0.00 2.69
5451 7962 0.109735 TAACGTCGAGCAGAGCAGTG 60.110 55.000 0.00 0.00 0.00 3.66
5452 7963 0.109689 GTAACGTCGAGCAGAGCAGT 60.110 55.000 0.00 0.00 0.00 4.40
5453 7964 0.169230 AGTAACGTCGAGCAGAGCAG 59.831 55.000 0.00 0.00 0.00 4.24
5454 7965 0.109735 CAGTAACGTCGAGCAGAGCA 60.110 55.000 0.00 0.00 0.00 4.26
5455 7966 0.109689 ACAGTAACGTCGAGCAGAGC 60.110 55.000 0.00 0.00 0.00 4.09
5456 7967 3.546417 GGATACAGTAACGTCGAGCAGAG 60.546 52.174 0.00 0.00 0.00 3.35
5457 7968 2.353889 GGATACAGTAACGTCGAGCAGA 59.646 50.000 0.00 0.00 0.00 4.26
5482 7993 4.269603 CCGAATGCAGTAAACTGAGATCAG 59.730 45.833 14.21 8.30 46.59 2.90
5486 7997 3.953712 TCCGAATGCAGTAAACTGAGA 57.046 42.857 14.21 0.00 46.59 3.27
5488 7999 3.270027 CCATCCGAATGCAGTAAACTGA 58.730 45.455 14.21 0.10 46.59 3.41
5491 8002 1.065551 GGCCATCCGAATGCAGTAAAC 59.934 52.381 0.00 0.00 0.00 2.01
5543 8054 2.692824 ATGCCATGCCACCCTGCTA 61.693 57.895 0.00 0.00 0.00 3.49
5553 8064 0.744874 AGAAGATGCACATGCCATGC 59.255 50.000 4.17 2.23 43.68 4.06
5554 8065 2.492019 CAGAAGATGCACATGCCATG 57.508 50.000 2.40 2.40 41.18 3.66
5571 8088 3.681593 TTCAAAATGTGAATGGGGCAG 57.318 42.857 0.00 0.00 41.47 4.85
5581 8098 4.164822 AGGTTGCTCGATTCAAAATGTG 57.835 40.909 2.37 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.