Multiple sequence alignment - TraesCS4D01G260700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G260700 chr4D 100.000 2930 0 0 1 2930 431231053 431233982 0.000000e+00 5411.0
1 TraesCS4D01G260700 chr4A 88.150 1941 135 39 994 2888 32653561 32655452 0.000000e+00 2222.0
2 TraesCS4D01G260700 chr4A 86.548 394 26 13 384 763 32653030 32653410 2.720000e-110 409.0
3 TraesCS4D01G260700 chr4A 93.827 162 7 1 792 950 32653400 32653561 1.050000e-59 241.0
4 TraesCS4D01G260700 chr4A 96.970 33 1 0 2893 2925 32655475 32655507 4.080000e-04 56.5
5 TraesCS4D01G260700 chr4B 90.655 1038 51 22 1470 2494 529677254 529678258 0.000000e+00 1338.0
6 TraesCS4D01G260700 chr4B 88.641 1074 59 31 384 1417 529676113 529677163 0.000000e+00 1249.0
7 TraesCS4D01G260700 chr4B 84.836 244 16 3 2701 2925 529678481 529678722 2.940000e-55 226.0
8 TraesCS4D01G260700 chr4B 89.922 129 13 0 2530 2658 393459867 393459995 1.810000e-37 167.0
9 TraesCS4D01G260700 chr2D 90.610 213 19 1 101 313 618294777 618294566 6.180000e-72 281.0
10 TraesCS4D01G260700 chr2D 87.597 129 15 1 2530 2658 483627299 483627172 6.540000e-32 148.0
11 TraesCS4D01G260700 chr2D 87.097 62 8 0 1025 1086 345519525 345519464 1.460000e-08 71.3
12 TraesCS4D01G260700 chr7B 89.862 217 20 2 98 313 652145140 652145355 8.000000e-71 278.0
13 TraesCS4D01G260700 chr7B 89.815 216 20 2 99 313 663837632 663837846 2.880000e-70 276.0
14 TraesCS4D01G260700 chr7B 89.720 214 20 2 102 314 568090018 568089806 3.720000e-69 272.0
15 TraesCS4D01G260700 chr7B 89.231 130 13 1 2530 2659 351907115 351906987 8.400000e-36 161.0
16 TraesCS4D01G260700 chr6B 89.767 215 21 1 100 313 508172192 508172406 1.030000e-69 274.0
17 TraesCS4D01G260700 chr6B 88.060 134 14 2 2530 2661 688712324 688712457 1.090000e-34 158.0
18 TraesCS4D01G260700 chr3B 89.671 213 20 2 102 313 662525867 662525656 1.340000e-68 270.0
19 TraesCS4D01G260700 chr3B 89.231 130 14 0 2530 2659 778390971 778390842 2.340000e-36 163.0
20 TraesCS4D01G260700 chr3B 88.281 128 14 1 2530 2657 790469888 790469762 5.060000e-33 152.0
21 TraesCS4D01G260700 chr1A 89.671 213 20 2 102 313 25538981 25538770 1.340000e-68 270.0
22 TraesCS4D01G260700 chr5A 88.636 220 25 0 94 313 170855291 170855510 4.810000e-68 268.0
23 TraesCS4D01G260700 chr1D 88.288 222 24 2 92 313 10673384 10673165 6.230000e-67 265.0
24 TraesCS4D01G260700 chr2B 89.147 129 14 0 2530 2658 543172035 543172163 8.400000e-36 161.0
25 TraesCS4D01G260700 chr2B 90.196 51 5 0 1036 1086 411001501 411001451 1.880000e-07 67.6
26 TraesCS4D01G260700 chr1B 90.678 118 11 0 2541 2658 306460683 306460800 1.090000e-34 158.0
27 TraesCS4D01G260700 chr2A 87.097 62 8 0 1025 1086 458670100 458670161 1.460000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G260700 chr4D 431231053 431233982 2929 False 5411.000000 5411 100.00000 1 2930 1 chr4D.!!$F1 2929
1 TraesCS4D01G260700 chr4A 32653030 32655507 2477 False 732.125000 2222 91.37375 384 2925 4 chr4A.!!$F1 2541
2 TraesCS4D01G260700 chr4B 529676113 529678722 2609 False 937.666667 1338 88.04400 384 2925 3 chr4B.!!$F2 2541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.026285 GAACACACACGCGCATATCC 59.974 55.0 5.73 0.00 0.00 2.59 F
225 226 0.036952 CCGAGCCGGCATATCATCTT 60.037 55.0 31.54 3.33 41.17 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1906 2032 0.036952 CACCTCGCCATCTTGTCACT 60.037 55.0 0.0 0.0 0.0 3.41 R
1990 2121 0.674895 CCCGGCTTCCAAGAACAGAG 60.675 60.0 0.0 0.0 0.0 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.969055 GTGCAACACAAAGTACACGAG 58.031 47.619 0.00 0.00 36.32 4.18
21 22 1.937223 TGCAACACAAAGTACACGAGG 59.063 47.619 0.00 0.00 0.00 4.63
22 23 1.263217 GCAACACAAAGTACACGAGGG 59.737 52.381 0.00 0.00 0.00 4.30
23 24 2.828877 CAACACAAAGTACACGAGGGA 58.171 47.619 0.00 0.00 0.00 4.20
24 25 3.399330 CAACACAAAGTACACGAGGGAT 58.601 45.455 0.00 0.00 0.00 3.85
25 26 3.040147 ACACAAAGTACACGAGGGATG 57.960 47.619 0.00 0.00 0.00 3.51
26 27 2.631062 ACACAAAGTACACGAGGGATGA 59.369 45.455 0.00 0.00 0.00 2.92
27 28 3.260884 ACACAAAGTACACGAGGGATGAT 59.739 43.478 0.00 0.00 0.00 2.45
28 29 3.865745 CACAAAGTACACGAGGGATGATC 59.134 47.826 0.00 0.00 0.00 2.92
29 30 3.513912 ACAAAGTACACGAGGGATGATCA 59.486 43.478 0.00 0.00 0.00 2.92
30 31 4.162320 ACAAAGTACACGAGGGATGATCAT 59.838 41.667 8.25 8.25 0.00 2.45
31 32 4.592485 AAGTACACGAGGGATGATCATC 57.408 45.455 24.90 24.90 37.11 2.92
32 33 3.566351 AGTACACGAGGGATGATCATCA 58.434 45.455 31.49 10.46 39.54 3.07
33 34 3.960755 AGTACACGAGGGATGATCATCAA 59.039 43.478 31.49 8.15 39.54 2.57
34 35 3.912496 ACACGAGGGATGATCATCAAA 57.088 42.857 31.49 0.00 39.54 2.69
35 36 4.220693 ACACGAGGGATGATCATCAAAA 57.779 40.909 31.49 0.00 39.54 2.44
36 37 4.588899 ACACGAGGGATGATCATCAAAAA 58.411 39.130 31.49 0.00 39.54 1.94
37 38 5.195940 ACACGAGGGATGATCATCAAAAAT 58.804 37.500 31.49 15.24 39.54 1.82
38 39 5.066893 ACACGAGGGATGATCATCAAAAATG 59.933 40.000 31.49 24.53 39.54 2.32
39 40 5.297527 CACGAGGGATGATCATCAAAAATGA 59.702 40.000 31.49 0.00 39.54 2.57
40 41 5.297776 ACGAGGGATGATCATCAAAAATGAC 59.702 40.000 31.49 14.85 39.54 3.06
41 42 5.297527 CGAGGGATGATCATCAAAAATGACA 59.702 40.000 31.49 0.00 39.54 3.58
42 43 6.512903 CGAGGGATGATCATCAAAAATGACAG 60.513 42.308 31.49 11.24 39.54 3.51
43 44 5.597182 AGGGATGATCATCAAAAATGACAGG 59.403 40.000 31.49 0.00 39.54 4.00
44 45 5.361857 GGGATGATCATCAAAAATGACAGGT 59.638 40.000 31.49 0.00 39.54 4.00
45 46 6.460676 GGGATGATCATCAAAAATGACAGGTC 60.461 42.308 31.49 12.60 39.54 3.85
46 47 5.550232 TGATCATCAAAAATGACAGGTCG 57.450 39.130 0.00 0.00 0.00 4.79
47 48 5.003160 TGATCATCAAAAATGACAGGTCGT 58.997 37.500 0.00 0.00 0.00 4.34
48 49 6.169800 TGATCATCAAAAATGACAGGTCGTA 58.830 36.000 0.00 0.00 0.00 3.43
49 50 6.652900 TGATCATCAAAAATGACAGGTCGTAA 59.347 34.615 0.00 0.00 0.00 3.18
50 51 6.869315 TCATCAAAAATGACAGGTCGTAAA 57.131 33.333 0.00 0.00 0.00 2.01
51 52 7.265647 TCATCAAAAATGACAGGTCGTAAAA 57.734 32.000 0.00 0.00 0.00 1.52
52 53 7.708051 TCATCAAAAATGACAGGTCGTAAAAA 58.292 30.769 0.00 0.00 0.00 1.94
53 54 8.356657 TCATCAAAAATGACAGGTCGTAAAAAT 58.643 29.630 0.00 0.00 0.00 1.82
54 55 7.922505 TCAAAAATGACAGGTCGTAAAAATG 57.077 32.000 0.00 0.00 0.00 2.32
55 56 7.484975 TCAAAAATGACAGGTCGTAAAAATGT 58.515 30.769 0.00 0.00 0.00 2.71
56 57 7.976734 TCAAAAATGACAGGTCGTAAAAATGTT 59.023 29.630 0.00 0.00 0.00 2.71
57 58 8.599774 CAAAAATGACAGGTCGTAAAAATGTTT 58.400 29.630 0.00 0.00 0.00 2.83
58 59 8.710835 AAAATGACAGGTCGTAAAAATGTTTT 57.289 26.923 0.00 0.00 0.00 2.43
59 60 7.692908 AATGACAGGTCGTAAAAATGTTTTG 57.307 32.000 0.00 0.00 0.00 2.44
60 61 6.438259 TGACAGGTCGTAAAAATGTTTTGA 57.562 33.333 0.00 0.00 0.00 2.69
61 62 6.853720 TGACAGGTCGTAAAAATGTTTTGAA 58.146 32.000 0.00 0.00 0.00 2.69
62 63 7.484975 TGACAGGTCGTAAAAATGTTTTGAAT 58.515 30.769 0.00 0.00 0.00 2.57
63 64 7.976734 TGACAGGTCGTAAAAATGTTTTGAATT 59.023 29.630 0.00 0.00 0.00 2.17
64 65 8.125728 ACAGGTCGTAAAAATGTTTTGAATTG 57.874 30.769 0.00 0.00 0.00 2.32
65 66 7.223777 ACAGGTCGTAAAAATGTTTTGAATTGG 59.776 33.333 0.00 0.00 0.00 3.16
66 67 6.704050 AGGTCGTAAAAATGTTTTGAATTGGG 59.296 34.615 0.00 0.00 0.00 4.12
67 68 6.702282 GGTCGTAAAAATGTTTTGAATTGGGA 59.298 34.615 0.00 0.00 0.00 4.37
68 69 7.224949 GGTCGTAAAAATGTTTTGAATTGGGAA 59.775 33.333 0.00 0.00 0.00 3.97
69 70 8.769891 GTCGTAAAAATGTTTTGAATTGGGAAT 58.230 29.630 0.00 0.00 0.00 3.01
70 71 9.982651 TCGTAAAAATGTTTTGAATTGGGAATA 57.017 25.926 0.00 0.00 0.00 1.75
81 82 6.556974 TGAATTGGGAATAATTCATGCCAA 57.443 33.333 15.57 15.57 46.50 4.52
82 83 7.139287 TGAATTGGGAATAATTCATGCCAAT 57.861 32.000 17.93 17.93 46.50 3.16
83 84 7.218614 TGAATTGGGAATAATTCATGCCAATC 58.781 34.615 21.58 16.79 46.50 2.67
84 85 7.071447 TGAATTGGGAATAATTCATGCCAATCT 59.929 33.333 21.58 14.85 46.50 2.40
85 86 6.811634 TTGGGAATAATTCATGCCAATCTT 57.188 33.333 10.97 0.00 33.12 2.40
86 87 6.811634 TGGGAATAATTCATGCCAATCTTT 57.188 33.333 1.73 0.00 33.12 2.52
87 88 6.584488 TGGGAATAATTCATGCCAATCTTTG 58.416 36.000 1.73 0.00 33.12 2.77
88 89 6.156602 TGGGAATAATTCATGCCAATCTTTGT 59.843 34.615 1.73 0.00 33.12 2.83
89 90 6.480981 GGGAATAATTCATGCCAATCTTTGTG 59.519 38.462 0.00 0.00 33.12 3.33
90 91 6.018507 GGAATAATTCATGCCAATCTTTGTGC 60.019 38.462 0.00 0.00 31.48 4.57
91 92 3.965379 ATTCATGCCAATCTTTGTGCA 57.035 38.095 6.07 6.07 39.77 4.57
92 93 3.747854 TTCATGCCAATCTTTGTGCAA 57.252 38.095 0.00 0.00 39.22 4.08
93 94 3.747854 TCATGCCAATCTTTGTGCAAA 57.252 38.095 0.00 0.00 39.22 3.68
94 95 4.069300 TCATGCCAATCTTTGTGCAAAA 57.931 36.364 0.00 0.00 39.22 2.44
95 96 4.059511 TCATGCCAATCTTTGTGCAAAAG 58.940 39.130 12.43 12.43 39.22 2.27
96 97 3.815856 TGCCAATCTTTGTGCAAAAGA 57.184 38.095 19.42 19.42 40.17 2.52
97 98 4.339872 TGCCAATCTTTGTGCAAAAGAT 57.660 36.364 21.25 21.25 45.87 2.40
98 99 4.309099 TGCCAATCTTTGTGCAAAAGATC 58.691 39.130 24.38 17.34 43.87 2.75
99 100 4.039488 TGCCAATCTTTGTGCAAAAGATCT 59.961 37.500 24.38 16.70 43.87 2.75
100 101 4.992951 GCCAATCTTTGTGCAAAAGATCTT 59.007 37.500 24.38 0.88 43.87 2.40
101 102 5.467735 GCCAATCTTTGTGCAAAAGATCTTT 59.532 36.000 24.38 15.11 43.87 2.52
102 103 6.017687 GCCAATCTTTGTGCAAAAGATCTTTT 60.018 34.615 24.62 24.62 43.87 2.27
103 104 7.467675 GCCAATCTTTGTGCAAAAGATCTTTTT 60.468 33.333 27.08 12.54 43.87 1.94
124 125 7.495339 TTTTTCTTTAACACAGTACAAACGC 57.505 32.000 0.00 0.00 0.00 4.84
125 126 5.798015 TTCTTTAACACAGTACAAACGCA 57.202 34.783 0.00 0.00 0.00 5.24
126 127 5.798015 TCTTTAACACAGTACAAACGCAA 57.202 34.783 0.00 0.00 0.00 4.85
128 129 2.468532 AACACAGTACAAACGCAAGC 57.531 45.000 0.00 0.00 45.62 4.01
129 130 0.303493 ACACAGTACAAACGCAAGCG 59.697 50.000 13.50 13.50 46.03 4.68
130 131 0.991770 CACAGTACAAACGCAAGCGC 60.992 55.000 15.09 0.00 44.19 5.92
131 132 1.157870 ACAGTACAAACGCAAGCGCT 61.158 50.000 15.09 2.64 44.19 5.92
132 133 0.451135 CAGTACAAACGCAAGCGCTC 60.451 55.000 12.06 0.00 44.19 5.03
133 134 0.878523 AGTACAAACGCAAGCGCTCA 60.879 50.000 12.06 0.00 44.19 4.26
134 135 0.165944 GTACAAACGCAAGCGCTCAT 59.834 50.000 12.06 0.00 44.19 2.90
135 136 1.392168 GTACAAACGCAAGCGCTCATA 59.608 47.619 12.06 0.00 44.19 2.15
136 137 0.165944 ACAAACGCAAGCGCTCATAC 59.834 50.000 12.06 0.00 44.19 2.39
137 138 0.165727 CAAACGCAAGCGCTCATACA 59.834 50.000 12.06 0.00 44.19 2.29
138 139 0.165944 AAACGCAAGCGCTCATACAC 59.834 50.000 12.06 0.00 44.19 2.90
139 140 0.948623 AACGCAAGCGCTCATACACA 60.949 50.000 12.06 0.00 44.19 3.72
140 141 1.059369 CGCAAGCGCTCATACACAC 59.941 57.895 12.06 0.00 35.30 3.82
141 142 1.059369 GCAAGCGCTCATACACACG 59.941 57.895 12.06 0.00 34.30 4.49
144 145 3.179265 GCGCTCATACACACGCGT 61.179 61.111 5.58 5.58 46.56 6.01
145 146 1.870458 GCGCTCATACACACGCGTA 60.870 57.895 13.44 0.00 46.56 4.42
146 147 1.206745 GCGCTCATACACACGCGTAT 61.207 55.000 13.44 0.00 46.56 3.06
147 148 1.922880 GCGCTCATACACACGCGTATA 60.923 52.381 13.44 5.36 46.56 1.47
148 149 1.707117 CGCTCATACACACGCGTATAC 59.293 52.381 13.44 0.00 40.64 1.47
149 150 2.723209 GCTCATACACACGCGTATACA 58.277 47.619 13.44 0.00 30.83 2.29
150 151 2.466571 GCTCATACACACGCGTATACAC 59.533 50.000 13.44 0.00 30.83 2.90
151 152 3.791122 GCTCATACACACGCGTATACACT 60.791 47.826 13.44 0.00 30.83 3.55
152 153 4.553351 GCTCATACACACGCGTATACACTA 60.553 45.833 13.44 0.00 30.83 2.74
153 154 5.482686 TCATACACACGCGTATACACTAA 57.517 39.130 13.44 0.00 30.83 2.24
154 155 5.265477 TCATACACACGCGTATACACTAAC 58.735 41.667 13.44 0.00 30.83 2.34
155 156 2.867429 ACACACGCGTATACACTAACC 58.133 47.619 13.44 0.00 0.00 2.85
156 157 2.187707 CACACGCGTATACACTAACCC 58.812 52.381 13.44 0.00 0.00 4.11
157 158 1.134946 ACACGCGTATACACTAACCCC 59.865 52.381 13.44 0.00 0.00 4.95
158 159 1.406539 CACGCGTATACACTAACCCCT 59.593 52.381 13.44 0.00 0.00 4.79
159 160 2.618241 CACGCGTATACACTAACCCCTA 59.382 50.000 13.44 0.00 0.00 3.53
160 161 3.254166 CACGCGTATACACTAACCCCTAT 59.746 47.826 13.44 0.00 0.00 2.57
161 162 3.254166 ACGCGTATACACTAACCCCTATG 59.746 47.826 11.67 0.00 0.00 2.23
162 163 3.503363 CGCGTATACACTAACCCCTATGA 59.497 47.826 0.00 0.00 0.00 2.15
163 164 4.022935 CGCGTATACACTAACCCCTATGAA 60.023 45.833 0.00 0.00 0.00 2.57
164 165 5.225642 GCGTATACACTAACCCCTATGAAC 58.774 45.833 3.32 0.00 0.00 3.18
165 166 5.221303 GCGTATACACTAACCCCTATGAACA 60.221 44.000 3.32 0.00 0.00 3.18
166 167 6.211515 CGTATACACTAACCCCTATGAACAC 58.788 44.000 3.32 0.00 0.00 3.32
167 168 6.183360 CGTATACACTAACCCCTATGAACACA 60.183 42.308 3.32 0.00 0.00 3.72
168 169 4.281898 ACACTAACCCCTATGAACACAC 57.718 45.455 0.00 0.00 0.00 3.82
169 170 3.649023 ACACTAACCCCTATGAACACACA 59.351 43.478 0.00 0.00 0.00 3.72
170 171 4.000988 CACTAACCCCTATGAACACACAC 58.999 47.826 0.00 0.00 0.00 3.82
171 172 2.178912 AACCCCTATGAACACACACG 57.821 50.000 0.00 0.00 0.00 4.49
172 173 0.321298 ACCCCTATGAACACACACGC 60.321 55.000 0.00 0.00 0.00 5.34
173 174 1.358725 CCCCTATGAACACACACGCG 61.359 60.000 3.53 3.53 0.00 6.01
174 175 1.419922 CCTATGAACACACACGCGC 59.580 57.895 5.73 0.00 0.00 6.86
175 176 1.288419 CCTATGAACACACACGCGCA 61.288 55.000 5.73 0.00 0.00 6.09
176 177 0.721154 CTATGAACACACACGCGCAT 59.279 50.000 5.73 0.80 0.00 4.73
177 178 1.923864 CTATGAACACACACGCGCATA 59.076 47.619 5.73 2.13 0.00 3.14
178 179 1.368641 ATGAACACACACGCGCATAT 58.631 45.000 5.73 0.00 0.00 1.78
179 180 0.718904 TGAACACACACGCGCATATC 59.281 50.000 5.73 0.00 0.00 1.63
180 181 0.026285 GAACACACACGCGCATATCC 59.974 55.000 5.73 0.00 0.00 2.59
181 182 0.391130 AACACACACGCGCATATCCT 60.391 50.000 5.73 0.00 0.00 3.24
182 183 0.458260 ACACACACGCGCATATCCTA 59.542 50.000 5.73 0.00 0.00 2.94
183 184 1.068588 ACACACACGCGCATATCCTAT 59.931 47.619 5.73 0.00 0.00 2.57
184 185 1.721389 CACACACGCGCATATCCTATC 59.279 52.381 5.73 0.00 0.00 2.08
185 186 1.336887 ACACACGCGCATATCCTATCC 60.337 52.381 5.73 0.00 0.00 2.59
186 187 0.246635 ACACGCGCATATCCTATCCC 59.753 55.000 5.73 0.00 0.00 3.85
187 188 0.532573 CACGCGCATATCCTATCCCT 59.467 55.000 5.73 0.00 0.00 4.20
188 189 1.749063 CACGCGCATATCCTATCCCTA 59.251 52.381 5.73 0.00 0.00 3.53
189 190 2.362397 CACGCGCATATCCTATCCCTAT 59.638 50.000 5.73 0.00 0.00 2.57
190 191 2.362397 ACGCGCATATCCTATCCCTATG 59.638 50.000 5.73 0.00 0.00 2.23
191 192 2.623416 CGCGCATATCCTATCCCTATGA 59.377 50.000 8.75 0.00 0.00 2.15
192 193 3.068165 CGCGCATATCCTATCCCTATGAA 59.932 47.826 8.75 0.00 0.00 2.57
193 194 4.372656 GCGCATATCCTATCCCTATGAAC 58.627 47.826 0.30 0.00 0.00 3.18
194 195 4.141937 GCGCATATCCTATCCCTATGAACA 60.142 45.833 0.30 0.00 0.00 3.18
195 196 5.352284 CGCATATCCTATCCCTATGAACAC 58.648 45.833 0.00 0.00 0.00 3.32
196 197 5.675538 GCATATCCTATCCCTATGAACACC 58.324 45.833 0.00 0.00 0.00 4.16
197 198 5.426833 GCATATCCTATCCCTATGAACACCT 59.573 44.000 0.00 0.00 0.00 4.00
198 199 6.407525 GCATATCCTATCCCTATGAACACCTC 60.408 46.154 0.00 0.00 0.00 3.85
199 200 3.858135 TCCTATCCCTATGAACACCTCC 58.142 50.000 0.00 0.00 0.00 4.30
200 201 2.563179 CCTATCCCTATGAACACCTCCG 59.437 54.545 0.00 0.00 0.00 4.63
201 202 2.471815 ATCCCTATGAACACCTCCGA 57.528 50.000 0.00 0.00 0.00 4.55
202 203 2.241281 TCCCTATGAACACCTCCGAA 57.759 50.000 0.00 0.00 0.00 4.30
203 204 2.542550 TCCCTATGAACACCTCCGAAA 58.457 47.619 0.00 0.00 0.00 3.46
204 205 2.907696 TCCCTATGAACACCTCCGAAAA 59.092 45.455 0.00 0.00 0.00 2.29
205 206 3.328343 TCCCTATGAACACCTCCGAAAAA 59.672 43.478 0.00 0.00 0.00 1.94
206 207 3.439129 CCCTATGAACACCTCCGAAAAAC 59.561 47.826 0.00 0.00 0.00 2.43
207 208 3.439129 CCTATGAACACCTCCGAAAAACC 59.561 47.826 0.00 0.00 0.00 3.27
208 209 1.301423 TGAACACCTCCGAAAAACCG 58.699 50.000 0.00 0.00 0.00 4.44
209 210 1.134461 TGAACACCTCCGAAAAACCGA 60.134 47.619 0.00 0.00 0.00 4.69
210 211 1.529865 GAACACCTCCGAAAAACCGAG 59.470 52.381 0.00 0.00 0.00 4.63
211 212 0.883370 ACACCTCCGAAAAACCGAGC 60.883 55.000 0.00 0.00 0.00 5.03
212 213 1.302271 ACCTCCGAAAAACCGAGCC 60.302 57.895 0.00 0.00 0.00 4.70
213 214 2.388232 CCTCCGAAAAACCGAGCCG 61.388 63.158 0.00 0.00 0.00 5.52
223 224 4.192000 CCGAGCCGGCATATCATC 57.808 61.111 31.54 15.45 41.17 2.92
224 225 1.593787 CCGAGCCGGCATATCATCT 59.406 57.895 31.54 4.27 41.17 2.90
225 226 0.036952 CCGAGCCGGCATATCATCTT 60.037 55.000 31.54 3.33 41.17 2.40
226 227 1.073964 CGAGCCGGCATATCATCTTG 58.926 55.000 31.54 4.88 0.00 3.02
227 228 1.337167 CGAGCCGGCATATCATCTTGA 60.337 52.381 31.54 0.00 0.00 3.02
228 229 2.771089 GAGCCGGCATATCATCTTGAA 58.229 47.619 31.54 0.00 0.00 2.69
229 230 3.141398 GAGCCGGCATATCATCTTGAAA 58.859 45.455 31.54 0.00 0.00 2.69
230 231 3.755378 GAGCCGGCATATCATCTTGAAAT 59.245 43.478 31.54 0.06 0.00 2.17
231 232 4.147321 AGCCGGCATATCATCTTGAAATT 58.853 39.130 31.54 0.00 0.00 1.82
232 233 4.586001 AGCCGGCATATCATCTTGAAATTT 59.414 37.500 31.54 0.00 0.00 1.82
233 234 5.769662 AGCCGGCATATCATCTTGAAATTTA 59.230 36.000 31.54 0.00 0.00 1.40
234 235 5.858581 GCCGGCATATCATCTTGAAATTTAC 59.141 40.000 24.80 0.00 0.00 2.01
235 236 6.079763 CCGGCATATCATCTTGAAATTTACG 58.920 40.000 0.00 0.00 0.00 3.18
236 237 6.073276 CCGGCATATCATCTTGAAATTTACGA 60.073 38.462 0.00 0.00 0.00 3.43
237 238 7.351981 CGGCATATCATCTTGAAATTTACGAA 58.648 34.615 0.00 0.00 0.00 3.85
238 239 7.855409 CGGCATATCATCTTGAAATTTACGAAA 59.145 33.333 0.00 0.00 0.00 3.46
239 240 9.683069 GGCATATCATCTTGAAATTTACGAAAT 57.317 29.630 0.00 0.00 0.00 2.17
244 245 7.240674 TCATCTTGAAATTTACGAAATCACCG 58.759 34.615 0.00 0.00 0.00 4.94
245 246 6.548441 TCTTGAAATTTACGAAATCACCGT 57.452 33.333 0.00 0.00 43.26 4.83
246 247 7.655236 TCTTGAAATTTACGAAATCACCGTA 57.345 32.000 0.00 0.00 40.95 4.02
247 248 7.735500 TCTTGAAATTTACGAAATCACCGTAG 58.264 34.615 0.00 0.00 42.42 3.51
260 261 3.031660 CCGTAGGCACTTCTTCGTC 57.968 57.895 0.00 0.00 46.14 4.20
261 262 0.797249 CCGTAGGCACTTCTTCGTCG 60.797 60.000 0.00 0.00 46.14 5.12
262 263 0.167470 CGTAGGCACTTCTTCGTCGA 59.833 55.000 0.00 0.00 41.75 4.20
263 264 1.615502 GTAGGCACTTCTTCGTCGAC 58.384 55.000 5.18 5.18 41.75 4.20
264 265 0.167470 TAGGCACTTCTTCGTCGACG 59.833 55.000 31.30 31.30 41.75 5.12
265 266 2.087009 GGCACTTCTTCGTCGACGG 61.087 63.158 35.05 21.47 40.29 4.79
266 267 2.087009 GCACTTCTTCGTCGACGGG 61.087 63.158 35.05 26.65 40.29 5.28
267 268 1.577922 CACTTCTTCGTCGACGGGA 59.422 57.895 35.05 28.24 40.29 5.14
268 269 0.039798 CACTTCTTCGTCGACGGGAA 60.040 55.000 35.05 31.77 40.29 3.97
269 270 0.039708 ACTTCTTCGTCGACGGGAAC 60.040 55.000 35.05 0.00 40.29 3.62
281 282 2.126031 GGGAACGTCTCCTCGCAC 60.126 66.667 13.94 0.00 44.68 5.34
282 283 2.637383 GGGAACGTCTCCTCGCACT 61.637 63.158 13.94 0.00 44.68 4.40
283 284 1.444553 GGAACGTCTCCTCGCACTG 60.445 63.158 8.87 0.00 41.61 3.66
284 285 1.286260 GAACGTCTCCTCGCACTGT 59.714 57.895 0.00 0.00 0.00 3.55
285 286 0.520404 GAACGTCTCCTCGCACTGTA 59.480 55.000 0.00 0.00 0.00 2.74
286 287 1.132643 GAACGTCTCCTCGCACTGTAT 59.867 52.381 0.00 0.00 0.00 2.29
287 288 0.452184 ACGTCTCCTCGCACTGTATG 59.548 55.000 0.00 0.00 0.00 2.39
305 306 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
306 307 1.300620 CGCATCGCCGGAAATCCTA 60.301 57.895 5.05 0.00 0.00 2.94
307 308 0.878523 CGCATCGCCGGAAATCCTAA 60.879 55.000 5.05 0.00 0.00 2.69
308 309 1.305201 GCATCGCCGGAAATCCTAAA 58.695 50.000 5.05 0.00 0.00 1.85
309 310 1.673920 GCATCGCCGGAAATCCTAAAA 59.326 47.619 5.05 0.00 0.00 1.52
310 311 2.293399 GCATCGCCGGAAATCCTAAAAT 59.707 45.455 5.05 0.00 0.00 1.82
311 312 3.500680 GCATCGCCGGAAATCCTAAAATA 59.499 43.478 5.05 0.00 0.00 1.40
312 313 4.023536 GCATCGCCGGAAATCCTAAAATAA 60.024 41.667 5.05 0.00 0.00 1.40
313 314 5.335661 GCATCGCCGGAAATCCTAAAATAAT 60.336 40.000 5.05 0.00 0.00 1.28
314 315 5.682943 TCGCCGGAAATCCTAAAATAATG 57.317 39.130 5.05 0.00 0.00 1.90
315 316 4.023536 TCGCCGGAAATCCTAAAATAATGC 60.024 41.667 5.05 0.00 0.00 3.56
316 317 4.226761 GCCGGAAATCCTAAAATAATGCG 58.773 43.478 5.05 0.00 0.00 4.73
317 318 4.023536 GCCGGAAATCCTAAAATAATGCGA 60.024 41.667 5.05 0.00 0.00 5.10
318 319 5.506649 GCCGGAAATCCTAAAATAATGCGAA 60.507 40.000 5.05 0.00 0.00 4.70
319 320 6.500041 CCGGAAATCCTAAAATAATGCGAAA 58.500 36.000 0.00 0.00 0.00 3.46
320 321 6.636850 CCGGAAATCCTAAAATAATGCGAAAG 59.363 38.462 0.00 0.00 0.00 2.62
321 322 7.414436 CGGAAATCCTAAAATAATGCGAAAGA 58.586 34.615 0.00 0.00 0.00 2.52
322 323 8.076178 CGGAAATCCTAAAATAATGCGAAAGAT 58.924 33.333 0.00 0.00 0.00 2.40
323 324 9.399403 GGAAATCCTAAAATAATGCGAAAGATC 57.601 33.333 0.00 0.00 0.00 2.75
324 325 9.950680 GAAATCCTAAAATAATGCGAAAGATCA 57.049 29.630 0.00 0.00 0.00 2.92
328 329 9.567848 TCCTAAAATAATGCGAAAGATCAAAAC 57.432 29.630 0.00 0.00 0.00 2.43
329 330 9.352784 CCTAAAATAATGCGAAAGATCAAAACA 57.647 29.630 0.00 0.00 0.00 2.83
331 332 8.816640 AAAATAATGCGAAAGATCAAAACAGT 57.183 26.923 0.00 0.00 0.00 3.55
332 333 8.816640 AAATAATGCGAAAGATCAAAACAGTT 57.183 26.923 0.00 0.00 0.00 3.16
333 334 9.906660 AAATAATGCGAAAGATCAAAACAGTTA 57.093 25.926 0.00 0.00 0.00 2.24
336 337 8.816640 AATGCGAAAGATCAAAACAGTTATTT 57.183 26.923 0.00 0.00 0.00 1.40
337 338 7.851822 TGCGAAAGATCAAAACAGTTATTTC 57.148 32.000 0.00 0.00 0.00 2.17
338 339 7.421599 TGCGAAAGATCAAAACAGTTATTTCA 58.578 30.769 0.00 0.00 0.00 2.69
339 340 7.591057 TGCGAAAGATCAAAACAGTTATTTCAG 59.409 33.333 0.00 0.00 0.00 3.02
340 341 7.409767 GCGAAAGATCAAAACAGTTATTTCAGC 60.410 37.037 0.00 0.00 0.00 4.26
341 342 7.061094 CGAAAGATCAAAACAGTTATTTCAGCC 59.939 37.037 0.00 0.00 0.00 4.85
342 343 5.942872 AGATCAAAACAGTTATTTCAGCCG 58.057 37.500 0.00 0.00 0.00 5.52
343 344 3.896122 TCAAAACAGTTATTTCAGCCGC 58.104 40.909 0.00 0.00 0.00 6.53
344 345 3.316588 TCAAAACAGTTATTTCAGCCGCA 59.683 39.130 0.00 0.00 0.00 5.69
345 346 3.559238 AAACAGTTATTTCAGCCGCAG 57.441 42.857 0.00 0.00 0.00 5.18
346 347 0.804989 ACAGTTATTTCAGCCGCAGC 59.195 50.000 0.00 0.00 40.32 5.25
356 357 2.256461 GCCGCAGCTTTCCAGTTG 59.744 61.111 0.00 0.00 34.41 3.16
361 362 2.724520 CAGCTTTCCAGTTGCCAGT 58.275 52.632 0.00 0.00 0.00 4.00
362 363 1.035139 CAGCTTTCCAGTTGCCAGTT 58.965 50.000 0.00 0.00 0.00 3.16
363 364 1.410153 CAGCTTTCCAGTTGCCAGTTT 59.590 47.619 0.00 0.00 0.00 2.66
364 365 1.410153 AGCTTTCCAGTTGCCAGTTTG 59.590 47.619 0.00 0.00 0.00 2.93
365 366 1.856802 CTTTCCAGTTGCCAGTTTGC 58.143 50.000 0.00 0.00 0.00 3.68
366 367 1.136695 CTTTCCAGTTGCCAGTTTGCA 59.863 47.619 0.00 0.00 40.07 4.08
367 368 0.459489 TTCCAGTTGCCAGTTTGCAC 59.541 50.000 0.00 0.00 41.88 4.57
368 369 0.395586 TCCAGTTGCCAGTTTGCACT 60.396 50.000 0.00 0.00 41.88 4.40
369 370 0.461135 CCAGTTGCCAGTTTGCACTT 59.539 50.000 0.00 0.00 41.88 3.16
370 371 1.134729 CCAGTTGCCAGTTTGCACTTT 60.135 47.619 0.00 0.00 41.88 2.66
371 372 1.928503 CAGTTGCCAGTTTGCACTTTG 59.071 47.619 0.00 0.00 41.88 2.77
372 373 0.652071 GTTGCCAGTTTGCACTTTGC 59.348 50.000 0.00 0.00 41.88 3.68
381 382 3.670377 GCACTTTGCACCCGTCCC 61.670 66.667 0.00 0.00 44.26 4.46
382 383 3.353836 CACTTTGCACCCGTCCCG 61.354 66.667 0.00 0.00 0.00 5.14
449 458 2.817834 GCGGCGCAGGACAACATA 60.818 61.111 29.21 0.00 0.00 2.29
560 594 2.586357 GCGAGAGGATGGAACCGC 60.586 66.667 0.00 0.00 35.91 5.68
615 653 3.059386 TTTAAGCCGGCAAGCGGG 61.059 61.111 31.54 13.65 38.01 6.13
755 803 2.187946 CCACGTGATGCCTCCCTC 59.812 66.667 19.30 0.00 0.00 4.30
756 804 2.202797 CACGTGATGCCTCCCTCG 60.203 66.667 10.90 0.00 0.00 4.63
758 806 3.842923 CGTGATGCCTCCCTCGCT 61.843 66.667 0.00 0.00 0.00 4.93
759 807 2.586792 GTGATGCCTCCCTCGCTT 59.413 61.111 0.00 0.00 0.00 4.68
779 833 4.824515 CGCTCCTCCCCTCCGTCT 62.825 72.222 0.00 0.00 0.00 4.18
795 849 3.691342 CTCCAACGCCGGACCTCA 61.691 66.667 5.05 0.00 0.00 3.86
820 874 0.251354 CCCCACCTGTCACTGAGATG 59.749 60.000 0.00 0.00 0.00 2.90
840 894 0.696501 AAGGTTTACTCCCGCCACAT 59.303 50.000 0.00 0.00 0.00 3.21
1242 1305 4.435436 CCGCGCCAGCAGTACTCA 62.435 66.667 0.00 0.00 45.49 3.41
1346 1409 2.437359 GCGGCAGAGCAAGATGGT 60.437 61.111 0.00 0.00 37.05 3.55
1420 1483 2.241160 TCAAGCACTCCAAGGTACGTA 58.759 47.619 0.00 0.00 0.00 3.57
1421 1484 2.029649 TCAAGCACTCCAAGGTACGTAC 60.030 50.000 17.56 17.56 0.00 3.67
1422 1485 1.920610 AGCACTCCAAGGTACGTACT 58.079 50.000 24.07 8.57 0.00 2.73
1423 1486 2.245582 AGCACTCCAAGGTACGTACTT 58.754 47.619 24.07 15.22 0.00 2.24
1449 1568 1.242076 GCTTGTGCAGTCCAATCTGT 58.758 50.000 0.00 0.00 39.41 3.41
1455 1574 1.421268 TGCAGTCCAATCTGTGTTCCT 59.579 47.619 0.00 0.00 37.70 3.36
1459 1578 4.392940 CAGTCCAATCTGTGTTCCTTTCT 58.607 43.478 0.00 0.00 0.00 2.52
1460 1579 4.823989 CAGTCCAATCTGTGTTCCTTTCTT 59.176 41.667 0.00 0.00 0.00 2.52
1481 1600 1.719780 CCGAGTTCTTCTAACACGCAC 59.280 52.381 2.79 0.00 33.91 5.34
1552 1671 4.137872 GCCGGGTCGACGATGGAA 62.138 66.667 19.72 0.00 35.47 3.53
1554 1673 1.143183 CCGGGTCGACGATGGAATT 59.857 57.895 9.92 0.00 35.47 2.17
1661 1780 5.901884 CGCATAACTAATTTCTTGCTTACGG 59.098 40.000 0.00 0.00 0.00 4.02
1800 1925 1.221840 CAGGTGACCATTCTCCCGG 59.778 63.158 3.63 0.00 36.21 5.73
1845 1971 3.118038 ACCGGCAGCCTTTCAATCTTATA 60.118 43.478 10.54 0.00 0.00 0.98
1846 1972 3.251004 CCGGCAGCCTTTCAATCTTATAC 59.749 47.826 10.54 0.00 0.00 1.47
1847 1973 4.130118 CGGCAGCCTTTCAATCTTATACT 58.870 43.478 10.54 0.00 0.00 2.12
1848 1974 5.297547 CGGCAGCCTTTCAATCTTATACTA 58.702 41.667 10.54 0.00 0.00 1.82
1880 2006 8.864087 AGCTCAAAATATTTTTGGTTCTTCTCT 58.136 29.630 10.77 0.00 0.00 3.10
1881 2007 9.481340 GCTCAAAATATTTTTGGTTCTTCTCTT 57.519 29.630 10.77 0.00 0.00 2.85
1906 2032 2.604686 AGGCTTGCAGAGACGGGA 60.605 61.111 0.00 0.00 38.95 5.14
1919 2045 1.296715 ACGGGAGTGACAAGATGGC 59.703 57.895 0.00 0.00 44.82 4.40
1930 2056 0.742281 CAAGATGGCGAGGTGGTGAG 60.742 60.000 0.00 0.00 0.00 3.51
1932 2058 2.607750 ATGGCGAGGTGGTGAGGT 60.608 61.111 0.00 0.00 0.00 3.85
1933 2059 2.859273 GATGGCGAGGTGGTGAGGTG 62.859 65.000 0.00 0.00 0.00 4.00
1934 2060 4.394712 GGCGAGGTGGTGAGGTGG 62.395 72.222 0.00 0.00 0.00 4.61
1935 2061 3.626924 GCGAGGTGGTGAGGTGGT 61.627 66.667 0.00 0.00 0.00 4.16
1936 2062 2.343758 CGAGGTGGTGAGGTGGTG 59.656 66.667 0.00 0.00 0.00 4.17
1937 2063 2.207229 CGAGGTGGTGAGGTGGTGA 61.207 63.158 0.00 0.00 0.00 4.02
1941 2067 2.122413 TGGTGAGGTGGTGAGGCT 60.122 61.111 0.00 0.00 0.00 4.58
2040 2174 5.247110 TGGGCAGCTAGAAGAATAGAATAGG 59.753 44.000 0.00 0.00 0.00 2.57
2047 2181 9.023962 AGCTAGAAGAATAGAATAGGATGAGTG 57.976 37.037 0.00 0.00 0.00 3.51
2052 2186 2.231215 AGAATAGGATGAGTGTGCGC 57.769 50.000 0.00 0.00 0.00 6.09
2072 2206 3.524759 CGTTGCGTCGCGAGAGTC 61.525 66.667 10.24 0.00 43.49 3.36
2238 2372 3.566351 ACAAAAACCTGAGGGGAAAGAG 58.434 45.455 2.38 0.00 38.76 2.85
2239 2373 3.204382 ACAAAAACCTGAGGGGAAAGAGA 59.796 43.478 2.38 0.00 38.76 3.10
2240 2374 3.797559 AAAACCTGAGGGGAAAGAGAG 57.202 47.619 2.38 0.00 38.76 3.20
2241 2375 2.723530 AACCTGAGGGGAAAGAGAGA 57.276 50.000 2.38 0.00 38.76 3.10
2242 2376 2.246091 ACCTGAGGGGAAAGAGAGAG 57.754 55.000 2.38 0.00 38.76 3.20
2244 2378 2.112691 ACCTGAGGGGAAAGAGAGAGAA 59.887 50.000 2.38 0.00 38.76 2.87
2245 2379 3.177228 CCTGAGGGGAAAGAGAGAGAAA 58.823 50.000 0.00 0.00 37.23 2.52
2304 2438 1.572085 GCGTCTGCTGCACTGTCATT 61.572 55.000 0.00 0.00 38.39 2.57
2311 2445 0.098200 CTGCACTGTCATTGATGGCG 59.902 55.000 0.00 0.00 34.48 5.69
2330 2471 2.509569 CGCCCTAGCTATCTCTCTCAA 58.490 52.381 0.00 0.00 36.60 3.02
2456 2615 1.497991 TCAGAGCAAGCAACACGTAC 58.502 50.000 0.00 0.00 0.00 3.67
2477 2636 4.112634 ACGATCAATGTCGACCAAGTATG 58.887 43.478 14.12 3.29 44.06 2.39
2542 2701 2.781681 AACTGCAACTAGGGCGTATT 57.218 45.000 0.00 0.00 0.00 1.89
2548 2707 2.159572 GCAACTAGGGCGTATTGTTGTG 60.160 50.000 15.97 0.10 39.81 3.33
2575 2734 1.220817 AATTGCCAAGCCGTTTTGCG 61.221 50.000 0.00 0.00 40.95 4.85
2593 2752 1.520600 CGGGGGCGCTTGTAAAAACT 61.521 55.000 7.64 0.00 0.00 2.66
2597 2756 1.338655 GGGCGCTTGTAAAAACTCCAA 59.661 47.619 7.64 0.00 0.00 3.53
2604 2763 6.567891 GCGCTTGTAAAAACTCCAAACTCTAT 60.568 38.462 0.00 0.00 0.00 1.98
2605 2764 7.360361 CGCTTGTAAAAACTCCAAACTCTATT 58.640 34.615 0.00 0.00 0.00 1.73
2616 2775 8.616799 ACTCCAAACTCTATTCTCCTCTTATT 57.383 34.615 0.00 0.00 0.00 1.40
2617 2776 8.700973 ACTCCAAACTCTATTCTCCTCTTATTC 58.299 37.037 0.00 0.00 0.00 1.75
2628 2787 7.681259 TTCTCCTCTTATTCAATGGATGAGA 57.319 36.000 0.00 0.00 39.77 3.27
2630 2789 5.847304 TCCTCTTATTCAATGGATGAGACG 58.153 41.667 0.00 0.00 39.77 4.18
2640 2799 2.632377 TGGATGAGACGGATCTTTTGC 58.368 47.619 0.00 0.00 34.34 3.68
2641 2800 1.943340 GGATGAGACGGATCTTTTGCC 59.057 52.381 0.00 0.00 34.34 4.52
2644 2803 1.066143 TGAGACGGATCTTTTGCCTCC 60.066 52.381 0.00 0.00 34.34 4.30
2646 2805 4.617875 CGGATCTTTTGCCTCCGT 57.382 55.556 2.18 0.00 45.30 4.69
2647 2806 2.854522 CGGATCTTTTGCCTCCGTT 58.145 52.632 2.18 0.00 45.30 4.44
2648 2807 1.165270 CGGATCTTTTGCCTCCGTTT 58.835 50.000 2.18 0.00 45.30 3.60
2649 2808 1.539827 CGGATCTTTTGCCTCCGTTTT 59.460 47.619 2.18 0.00 45.30 2.43
2650 2809 2.668279 CGGATCTTTTGCCTCCGTTTTG 60.668 50.000 2.18 0.00 45.30 2.44
2653 2812 4.500716 GGATCTTTTGCCTCCGTTTTGAAA 60.501 41.667 0.00 0.00 0.00 2.69
2702 3022 8.549338 AACTGAGTAACTAGAAACAATTAGGC 57.451 34.615 0.00 0.00 0.00 3.93
2706 3026 8.255905 TGAGTAACTAGAAACAATTAGGCCTAC 58.744 37.037 13.46 0.00 0.00 3.18
2720 3040 2.159382 GGCCTACACAGCAAAGCTTAA 58.841 47.619 0.00 0.00 36.40 1.85
2776 3102 4.552378 GCGTCCACGTACTACATCTCTTAG 60.552 50.000 0.36 0.00 42.22 2.18
2927 3279 2.507643 GCGAGTGATTACTAGCGGC 58.492 57.895 6.97 0.00 43.82 6.53
2928 3280 0.248907 GCGAGTGATTACTAGCGGCA 60.249 55.000 6.97 0.00 43.82 5.69
2929 3281 1.478137 CGAGTGATTACTAGCGGCAC 58.522 55.000 1.45 0.00 37.25 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.286184 CCTCGTGTACTTTGTGTTGCAC 60.286 50.000 0.00 0.00 33.29 4.57
1 2 1.937223 CCTCGTGTACTTTGTGTTGCA 59.063 47.619 0.00 0.00 0.00 4.08
2 3 1.263217 CCCTCGTGTACTTTGTGTTGC 59.737 52.381 0.00 0.00 0.00 4.17
3 4 2.828877 TCCCTCGTGTACTTTGTGTTG 58.171 47.619 0.00 0.00 0.00 3.33
4 5 3.070446 TCATCCCTCGTGTACTTTGTGTT 59.930 43.478 0.00 0.00 0.00 3.32
5 6 2.631062 TCATCCCTCGTGTACTTTGTGT 59.369 45.455 0.00 0.00 0.00 3.72
6 7 3.313012 TCATCCCTCGTGTACTTTGTG 57.687 47.619 0.00 0.00 0.00 3.33
7 8 3.513912 TGATCATCCCTCGTGTACTTTGT 59.486 43.478 0.00 0.00 0.00 2.83
8 9 4.123497 TGATCATCCCTCGTGTACTTTG 57.877 45.455 0.00 0.00 0.00 2.77
9 10 4.405680 TGATGATCATCCCTCGTGTACTTT 59.594 41.667 28.61 0.00 37.02 2.66
10 11 3.960755 TGATGATCATCCCTCGTGTACTT 59.039 43.478 28.61 0.00 37.02 2.24
11 12 3.566351 TGATGATCATCCCTCGTGTACT 58.434 45.455 28.61 0.00 37.02 2.73
12 13 4.322080 TTGATGATCATCCCTCGTGTAC 57.678 45.455 28.61 5.16 37.02 2.90
13 14 5.351948 TTTTGATGATCATCCCTCGTGTA 57.648 39.130 28.61 8.41 37.02 2.90
14 15 3.912496 TTTGATGATCATCCCTCGTGT 57.088 42.857 28.61 0.00 37.02 4.49
15 16 5.297527 TCATTTTTGATGATCATCCCTCGTG 59.702 40.000 28.61 21.22 37.02 4.35
16 17 5.297776 GTCATTTTTGATGATCATCCCTCGT 59.702 40.000 28.61 12.36 37.02 4.18
17 18 5.297527 TGTCATTTTTGATGATCATCCCTCG 59.702 40.000 28.61 14.52 37.02 4.63
18 19 6.238953 CCTGTCATTTTTGATGATCATCCCTC 60.239 42.308 28.61 9.91 37.02 4.30
19 20 5.597182 CCTGTCATTTTTGATGATCATCCCT 59.403 40.000 28.61 9.36 37.02 4.20
20 21 5.361857 ACCTGTCATTTTTGATGATCATCCC 59.638 40.000 28.61 10.02 37.02 3.85
21 22 6.461110 ACCTGTCATTTTTGATGATCATCC 57.539 37.500 28.61 13.65 37.02 3.51
22 23 6.183360 ACGACCTGTCATTTTTGATGATCATC 60.183 38.462 25.91 25.91 38.29 2.92
23 24 5.649395 ACGACCTGTCATTTTTGATGATCAT 59.351 36.000 8.25 8.25 0.00 2.45
24 25 5.003160 ACGACCTGTCATTTTTGATGATCA 58.997 37.500 0.00 0.00 0.00 2.92
25 26 5.551760 ACGACCTGTCATTTTTGATGATC 57.448 39.130 0.00 0.00 0.00 2.92
26 27 7.447374 TTTACGACCTGTCATTTTTGATGAT 57.553 32.000 0.00 0.00 0.00 2.45
27 28 6.869315 TTTACGACCTGTCATTTTTGATGA 57.131 33.333 0.00 0.00 0.00 2.92
28 29 7.922505 TTTTTACGACCTGTCATTTTTGATG 57.077 32.000 0.00 0.00 0.00 3.07
29 30 8.141268 ACATTTTTACGACCTGTCATTTTTGAT 58.859 29.630 0.00 0.00 0.00 2.57
30 31 7.484975 ACATTTTTACGACCTGTCATTTTTGA 58.515 30.769 0.00 0.00 0.00 2.69
31 32 7.692908 ACATTTTTACGACCTGTCATTTTTG 57.307 32.000 0.00 0.00 0.00 2.44
32 33 8.710835 AAACATTTTTACGACCTGTCATTTTT 57.289 26.923 0.00 0.00 0.00 1.94
33 34 8.599774 CAAAACATTTTTACGACCTGTCATTTT 58.400 29.630 0.00 0.00 0.00 1.82
34 35 7.976734 TCAAAACATTTTTACGACCTGTCATTT 59.023 29.630 0.00 0.00 0.00 2.32
35 36 7.484975 TCAAAACATTTTTACGACCTGTCATT 58.515 30.769 0.00 0.00 0.00 2.57
36 37 7.033530 TCAAAACATTTTTACGACCTGTCAT 57.966 32.000 0.00 0.00 0.00 3.06
37 38 6.438259 TCAAAACATTTTTACGACCTGTCA 57.562 33.333 0.00 0.00 0.00 3.58
38 39 7.924103 ATTCAAAACATTTTTACGACCTGTC 57.076 32.000 0.00 0.00 0.00 3.51
39 40 7.223777 CCAATTCAAAACATTTTTACGACCTGT 59.776 33.333 0.00 0.00 0.00 4.00
40 41 7.307101 CCCAATTCAAAACATTTTTACGACCTG 60.307 37.037 0.00 0.00 0.00 4.00
41 42 6.704050 CCCAATTCAAAACATTTTTACGACCT 59.296 34.615 0.00 0.00 0.00 3.85
42 43 6.702282 TCCCAATTCAAAACATTTTTACGACC 59.298 34.615 0.00 0.00 0.00 4.79
43 44 7.701809 TCCCAATTCAAAACATTTTTACGAC 57.298 32.000 0.00 0.00 0.00 4.34
44 45 8.894768 ATTCCCAATTCAAAACATTTTTACGA 57.105 26.923 0.00 0.00 0.00 3.43
59 60 7.447594 AGATTGGCATGAATTATTCCCAATTC 58.552 34.615 20.08 15.21 41.63 2.17
60 61 7.383156 AGATTGGCATGAATTATTCCCAATT 57.617 32.000 20.08 11.96 41.63 2.32
61 62 7.383156 AAGATTGGCATGAATTATTCCCAAT 57.617 32.000 19.55 19.55 43.56 3.16
62 63 6.811634 AAGATTGGCATGAATTATTCCCAA 57.188 33.333 13.65 13.65 36.84 4.12
63 64 6.156602 ACAAAGATTGGCATGAATTATTCCCA 59.843 34.615 0.00 0.23 34.12 4.37
64 65 6.480981 CACAAAGATTGGCATGAATTATTCCC 59.519 38.462 0.00 0.00 34.12 3.97
65 66 6.018507 GCACAAAGATTGGCATGAATTATTCC 60.019 38.462 0.00 0.00 34.12 3.01
66 67 6.535865 TGCACAAAGATTGGCATGAATTATTC 59.464 34.615 0.00 0.00 33.81 1.75
67 68 6.408035 TGCACAAAGATTGGCATGAATTATT 58.592 32.000 0.00 0.00 33.81 1.40
68 69 5.979993 TGCACAAAGATTGGCATGAATTAT 58.020 33.333 0.00 0.00 33.81 1.28
69 70 5.402997 TGCACAAAGATTGGCATGAATTA 57.597 34.783 0.00 0.00 33.81 1.40
70 71 4.274602 TGCACAAAGATTGGCATGAATT 57.725 36.364 0.00 0.00 33.81 2.17
71 72 3.965379 TGCACAAAGATTGGCATGAAT 57.035 38.095 0.00 0.00 33.81 2.57
72 73 3.747854 TTGCACAAAGATTGGCATGAA 57.252 38.095 0.00 0.00 36.95 2.57
73 74 3.747854 TTTGCACAAAGATTGGCATGA 57.252 38.095 0.00 0.00 36.95 3.07
74 75 4.059511 TCTTTTGCACAAAGATTGGCATG 58.940 39.130 15.57 0.00 36.95 4.06
75 76 4.339872 TCTTTTGCACAAAGATTGGCAT 57.660 36.364 15.57 0.00 36.95 4.40
76 77 3.815856 TCTTTTGCACAAAGATTGGCA 57.184 38.095 15.57 0.00 35.86 4.92
77 78 4.563061 AGATCTTTTGCACAAAGATTGGC 58.437 39.130 24.70 17.32 44.45 4.52
78 79 7.486802 AAAAGATCTTTTGCACAAAGATTGG 57.513 32.000 28.35 1.15 44.45 3.16
100 101 7.082602 TGCGTTTGTACTGTGTTAAAGAAAAA 58.917 30.769 0.00 0.00 0.00 1.94
101 102 6.609533 TGCGTTTGTACTGTGTTAAAGAAAA 58.390 32.000 0.00 0.00 0.00 2.29
102 103 6.179504 TGCGTTTGTACTGTGTTAAAGAAA 57.820 33.333 0.00 0.00 0.00 2.52
103 104 5.798015 TGCGTTTGTACTGTGTTAAAGAA 57.202 34.783 0.00 0.00 0.00 2.52
104 105 5.728344 GCTTGCGTTTGTACTGTGTTAAAGA 60.728 40.000 0.00 0.00 0.00 2.52
105 106 4.436523 GCTTGCGTTTGTACTGTGTTAAAG 59.563 41.667 0.00 0.00 0.00 1.85
106 107 4.344448 GCTTGCGTTTGTACTGTGTTAAA 58.656 39.130 0.00 0.00 0.00 1.52
107 108 3.544440 CGCTTGCGTTTGTACTGTGTTAA 60.544 43.478 6.86 0.00 0.00 2.01
108 109 2.033577 CGCTTGCGTTTGTACTGTGTTA 60.034 45.455 6.86 0.00 0.00 2.41
109 110 1.267832 CGCTTGCGTTTGTACTGTGTT 60.268 47.619 6.86 0.00 0.00 3.32
110 111 0.303493 CGCTTGCGTTTGTACTGTGT 59.697 50.000 6.86 0.00 0.00 3.72
111 112 0.991770 GCGCTTGCGTTTGTACTGTG 60.992 55.000 16.38 0.00 0.00 3.66
112 113 1.157870 AGCGCTTGCGTTTGTACTGT 61.158 50.000 16.38 0.00 45.69 3.55
113 114 0.451135 GAGCGCTTGCGTTTGTACTG 60.451 55.000 13.26 0.00 45.69 2.74
114 115 0.878523 TGAGCGCTTGCGTTTGTACT 60.879 50.000 13.26 3.73 45.69 2.73
115 116 0.165944 ATGAGCGCTTGCGTTTGTAC 59.834 50.000 13.26 0.00 45.69 2.90
116 117 1.392168 GTATGAGCGCTTGCGTTTGTA 59.608 47.619 13.26 5.22 45.69 2.41
117 118 0.165944 GTATGAGCGCTTGCGTTTGT 59.834 50.000 13.26 6.11 45.69 2.83
118 119 0.165727 TGTATGAGCGCTTGCGTTTG 59.834 50.000 13.26 0.00 45.69 2.93
119 120 0.165944 GTGTATGAGCGCTTGCGTTT 59.834 50.000 13.26 5.45 45.69 3.60
120 121 0.948623 TGTGTATGAGCGCTTGCGTT 60.949 50.000 13.26 10.61 45.69 4.84
121 122 1.374125 TGTGTATGAGCGCTTGCGT 60.374 52.632 13.26 3.24 45.69 5.24
122 123 1.059369 GTGTGTATGAGCGCTTGCG 59.941 57.895 13.26 10.90 45.69 4.85
123 124 1.059369 CGTGTGTATGAGCGCTTGC 59.941 57.895 13.26 0.00 39.58 4.01
124 125 1.059369 GCGTGTGTATGAGCGCTTG 59.941 57.895 13.26 0.00 45.48 4.01
125 126 2.444624 CGCGTGTGTATGAGCGCTT 61.445 57.895 13.26 0.00 46.56 4.68
126 127 2.880879 CGCGTGTGTATGAGCGCT 60.881 61.111 11.27 11.27 46.56 5.92
129 130 2.466571 GTGTATACGCGTGTGTATGAGC 59.533 50.000 24.59 3.24 35.85 4.26
130 131 3.948851 AGTGTATACGCGTGTGTATGAG 58.051 45.455 24.59 0.00 35.85 2.90
131 132 5.265477 GTTAGTGTATACGCGTGTGTATGA 58.735 41.667 24.59 0.00 35.85 2.15
132 133 4.438797 GGTTAGTGTATACGCGTGTGTATG 59.561 45.833 24.59 0.00 35.85 2.39
133 134 4.498009 GGGTTAGTGTATACGCGTGTGTAT 60.498 45.833 24.59 10.02 38.54 2.29
134 135 3.181501 GGGTTAGTGTATACGCGTGTGTA 60.182 47.826 24.59 6.69 0.00 2.90
135 136 2.415893 GGGTTAGTGTATACGCGTGTGT 60.416 50.000 24.59 7.90 0.00 3.72
136 137 2.187707 GGGTTAGTGTATACGCGTGTG 58.812 52.381 24.59 0.00 0.00 3.82
137 138 1.134946 GGGGTTAGTGTATACGCGTGT 59.865 52.381 24.59 19.31 0.00 4.49
138 139 1.406539 AGGGGTTAGTGTATACGCGTG 59.593 52.381 24.59 0.00 0.00 5.34
139 140 1.767759 AGGGGTTAGTGTATACGCGT 58.232 50.000 19.17 19.17 0.00 6.01
140 141 3.503363 TCATAGGGGTTAGTGTATACGCG 59.497 47.826 3.53 3.53 0.00 6.01
141 142 5.221303 TGTTCATAGGGGTTAGTGTATACGC 60.221 44.000 8.42 8.42 0.00 4.42
142 143 6.183360 TGTGTTCATAGGGGTTAGTGTATACG 60.183 42.308 0.00 0.00 0.00 3.06
143 144 6.982724 GTGTGTTCATAGGGGTTAGTGTATAC 59.017 42.308 0.00 0.00 0.00 1.47
144 145 6.668718 TGTGTGTTCATAGGGGTTAGTGTATA 59.331 38.462 0.00 0.00 0.00 1.47
145 146 5.486063 TGTGTGTTCATAGGGGTTAGTGTAT 59.514 40.000 0.00 0.00 0.00 2.29
146 147 4.839550 TGTGTGTTCATAGGGGTTAGTGTA 59.160 41.667 0.00 0.00 0.00 2.90
147 148 3.649023 TGTGTGTTCATAGGGGTTAGTGT 59.351 43.478 0.00 0.00 0.00 3.55
148 149 4.000988 GTGTGTGTTCATAGGGGTTAGTG 58.999 47.826 0.00 0.00 0.00 2.74
149 150 3.306502 CGTGTGTGTTCATAGGGGTTAGT 60.307 47.826 0.00 0.00 0.00 2.24
150 151 3.259064 CGTGTGTGTTCATAGGGGTTAG 58.741 50.000 0.00 0.00 0.00 2.34
151 152 2.613474 GCGTGTGTGTTCATAGGGGTTA 60.613 50.000 0.00 0.00 0.00 2.85
152 153 1.880646 GCGTGTGTGTTCATAGGGGTT 60.881 52.381 0.00 0.00 0.00 4.11
153 154 0.321298 GCGTGTGTGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
154 155 1.358725 CGCGTGTGTGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
155 156 1.966493 GCGCGTGTGTGTTCATAGGG 61.966 60.000 8.43 0.00 0.00 3.53
156 157 1.288419 TGCGCGTGTGTGTTCATAGG 61.288 55.000 8.43 0.00 0.00 2.57
157 158 0.721154 ATGCGCGTGTGTGTTCATAG 59.279 50.000 8.43 0.00 0.00 2.23
158 159 1.997669 TATGCGCGTGTGTGTTCATA 58.002 45.000 13.61 1.02 0.00 2.15
159 160 1.327460 GATATGCGCGTGTGTGTTCAT 59.673 47.619 13.61 2.10 0.00 2.57
160 161 0.718904 GATATGCGCGTGTGTGTTCA 59.281 50.000 13.61 0.00 0.00 3.18
161 162 0.026285 GGATATGCGCGTGTGTGTTC 59.974 55.000 13.61 0.00 0.00 3.18
162 163 0.391130 AGGATATGCGCGTGTGTGTT 60.391 50.000 13.61 0.00 0.00 3.32
163 164 0.458260 TAGGATATGCGCGTGTGTGT 59.542 50.000 13.61 0.00 0.00 3.72
164 165 1.721389 GATAGGATATGCGCGTGTGTG 59.279 52.381 13.61 0.00 0.00 3.82
165 166 1.336887 GGATAGGATATGCGCGTGTGT 60.337 52.381 13.61 0.00 0.00 3.72
166 167 1.350193 GGATAGGATATGCGCGTGTG 58.650 55.000 13.61 0.00 0.00 3.82
167 168 0.246635 GGGATAGGATATGCGCGTGT 59.753 55.000 13.61 5.15 0.00 4.49
168 169 0.532573 AGGGATAGGATATGCGCGTG 59.467 55.000 13.61 0.00 0.00 5.34
169 170 2.139323 TAGGGATAGGATATGCGCGT 57.861 50.000 8.43 7.55 0.00 6.01
170 171 2.623416 TCATAGGGATAGGATATGCGCG 59.377 50.000 0.00 0.00 0.00 6.86
171 172 4.141937 TGTTCATAGGGATAGGATATGCGC 60.142 45.833 0.00 0.00 0.00 6.09
172 173 5.352284 GTGTTCATAGGGATAGGATATGCG 58.648 45.833 0.00 0.00 0.00 4.73
173 174 5.426833 AGGTGTTCATAGGGATAGGATATGC 59.573 44.000 0.00 0.00 0.00 3.14
174 175 6.098982 GGAGGTGTTCATAGGGATAGGATATG 59.901 46.154 0.00 0.00 0.00 1.78
175 176 6.206042 GGAGGTGTTCATAGGGATAGGATAT 58.794 44.000 0.00 0.00 0.00 1.63
176 177 5.590818 GGAGGTGTTCATAGGGATAGGATA 58.409 45.833 0.00 0.00 0.00 2.59
177 178 4.430441 GGAGGTGTTCATAGGGATAGGAT 58.570 47.826 0.00 0.00 0.00 3.24
178 179 3.754172 CGGAGGTGTTCATAGGGATAGGA 60.754 52.174 0.00 0.00 0.00 2.94
179 180 2.563179 CGGAGGTGTTCATAGGGATAGG 59.437 54.545 0.00 0.00 0.00 2.57
180 181 3.497332 TCGGAGGTGTTCATAGGGATAG 58.503 50.000 0.00 0.00 0.00 2.08
181 182 3.605726 TCGGAGGTGTTCATAGGGATA 57.394 47.619 0.00 0.00 0.00 2.59
182 183 2.471815 TCGGAGGTGTTCATAGGGAT 57.528 50.000 0.00 0.00 0.00 3.85
183 184 2.241281 TTCGGAGGTGTTCATAGGGA 57.759 50.000 0.00 0.00 0.00 4.20
184 185 3.343941 TTTTCGGAGGTGTTCATAGGG 57.656 47.619 0.00 0.00 0.00 3.53
185 186 3.439129 GGTTTTTCGGAGGTGTTCATAGG 59.561 47.826 0.00 0.00 0.00 2.57
186 187 3.124636 CGGTTTTTCGGAGGTGTTCATAG 59.875 47.826 0.00 0.00 0.00 2.23
187 188 3.068560 CGGTTTTTCGGAGGTGTTCATA 58.931 45.455 0.00 0.00 0.00 2.15
188 189 1.877443 CGGTTTTTCGGAGGTGTTCAT 59.123 47.619 0.00 0.00 0.00 2.57
189 190 1.134461 TCGGTTTTTCGGAGGTGTTCA 60.134 47.619 0.00 0.00 0.00 3.18
190 191 1.529865 CTCGGTTTTTCGGAGGTGTTC 59.470 52.381 0.00 0.00 39.04 3.18
191 192 1.589803 CTCGGTTTTTCGGAGGTGTT 58.410 50.000 0.00 0.00 39.04 3.32
192 193 0.883370 GCTCGGTTTTTCGGAGGTGT 60.883 55.000 0.00 0.00 41.72 4.16
193 194 1.574702 GGCTCGGTTTTTCGGAGGTG 61.575 60.000 0.00 0.00 41.72 4.00
194 195 1.302271 GGCTCGGTTTTTCGGAGGT 60.302 57.895 0.00 0.00 41.72 3.85
195 196 2.388232 CGGCTCGGTTTTTCGGAGG 61.388 63.158 0.00 0.00 41.72 4.30
196 197 2.388232 CCGGCTCGGTTTTTCGGAG 61.388 63.158 5.56 0.00 42.73 4.63
197 198 2.357760 CCGGCTCGGTTTTTCGGA 60.358 61.111 5.56 0.00 42.73 4.55
207 208 1.073964 CAAGATGATATGCCGGCTCG 58.926 55.000 29.70 0.00 0.00 5.03
208 209 2.462456 TCAAGATGATATGCCGGCTC 57.538 50.000 29.70 17.89 0.00 4.70
209 210 2.936919 TTCAAGATGATATGCCGGCT 57.063 45.000 29.70 15.76 0.00 5.52
210 211 4.510038 AATTTCAAGATGATATGCCGGC 57.490 40.909 22.73 22.73 0.00 6.13
211 212 6.073276 TCGTAAATTTCAAGATGATATGCCGG 60.073 38.462 0.00 0.00 0.00 6.13
212 213 6.887368 TCGTAAATTTCAAGATGATATGCCG 58.113 36.000 0.00 0.00 0.00 5.69
213 214 9.683069 ATTTCGTAAATTTCAAGATGATATGCC 57.317 29.630 0.00 0.00 0.00 4.40
218 219 7.910162 CGGTGATTTCGTAAATTTCAAGATGAT 59.090 33.333 0.00 0.00 0.00 2.45
219 220 7.094975 ACGGTGATTTCGTAAATTTCAAGATGA 60.095 33.333 0.00 0.00 39.22 2.92
220 221 7.021196 ACGGTGATTTCGTAAATTTCAAGATG 58.979 34.615 0.00 0.00 39.22 2.90
221 222 7.141100 ACGGTGATTTCGTAAATTTCAAGAT 57.859 32.000 0.00 0.00 39.22 2.40
222 223 6.548441 ACGGTGATTTCGTAAATTTCAAGA 57.452 33.333 0.00 0.00 39.22 3.02
223 224 6.959311 CCTACGGTGATTTCGTAAATTTCAAG 59.041 38.462 0.00 0.00 41.62 3.02
224 225 6.621164 GCCTACGGTGATTTCGTAAATTTCAA 60.621 38.462 0.00 0.00 41.62 2.69
225 226 5.163834 GCCTACGGTGATTTCGTAAATTTCA 60.164 40.000 0.00 0.00 41.62 2.69
226 227 5.163834 TGCCTACGGTGATTTCGTAAATTTC 60.164 40.000 0.00 0.00 41.62 2.17
227 228 4.696402 TGCCTACGGTGATTTCGTAAATTT 59.304 37.500 0.00 0.00 41.62 1.82
228 229 4.093850 GTGCCTACGGTGATTTCGTAAATT 59.906 41.667 0.00 0.00 41.62 1.82
229 230 3.619929 GTGCCTACGGTGATTTCGTAAAT 59.380 43.478 0.00 0.00 41.62 1.40
230 231 2.995258 GTGCCTACGGTGATTTCGTAAA 59.005 45.455 0.00 0.00 41.62 2.01
231 232 2.231964 AGTGCCTACGGTGATTTCGTAA 59.768 45.455 0.00 0.00 41.62 3.18
232 233 1.820519 AGTGCCTACGGTGATTTCGTA 59.179 47.619 0.00 0.00 41.38 3.43
233 234 0.606604 AGTGCCTACGGTGATTTCGT 59.393 50.000 0.00 0.00 43.64 3.85
234 235 1.659098 GAAGTGCCTACGGTGATTTCG 59.341 52.381 0.00 0.00 0.00 3.46
235 236 2.973945 AGAAGTGCCTACGGTGATTTC 58.026 47.619 0.00 0.00 0.00 2.17
236 237 3.335579 GAAGAAGTGCCTACGGTGATTT 58.664 45.455 0.00 0.00 0.00 2.17
237 238 2.674177 CGAAGAAGTGCCTACGGTGATT 60.674 50.000 0.00 0.00 0.00 2.57
238 239 1.135083 CGAAGAAGTGCCTACGGTGAT 60.135 52.381 0.00 0.00 0.00 3.06
239 240 0.242825 CGAAGAAGTGCCTACGGTGA 59.757 55.000 0.00 0.00 0.00 4.02
240 241 0.038526 ACGAAGAAGTGCCTACGGTG 60.039 55.000 0.00 0.00 0.00 4.94
241 242 0.243095 GACGAAGAAGTGCCTACGGT 59.757 55.000 0.00 0.00 0.00 4.83
242 243 0.797249 CGACGAAGAAGTGCCTACGG 60.797 60.000 0.00 0.00 0.00 4.02
243 244 0.167470 TCGACGAAGAAGTGCCTACG 59.833 55.000 0.00 0.00 0.00 3.51
244 245 1.615502 GTCGACGAAGAAGTGCCTAC 58.384 55.000 0.00 0.00 0.00 3.18
245 246 0.167470 CGTCGACGAAGAAGTGCCTA 59.833 55.000 33.35 0.00 43.02 3.93
246 247 1.081376 CGTCGACGAAGAAGTGCCT 60.081 57.895 33.35 0.00 43.02 4.75
247 248 2.087009 CCGTCGACGAAGAAGTGCC 61.087 63.158 37.65 0.00 43.02 5.01
248 249 2.087009 CCCGTCGACGAAGAAGTGC 61.087 63.158 37.65 0.00 43.02 4.40
249 250 0.039798 TTCCCGTCGACGAAGAAGTG 60.040 55.000 37.65 19.12 43.02 3.16
250 251 0.039708 GTTCCCGTCGACGAAGAAGT 60.040 55.000 37.65 0.00 43.02 3.01
251 252 1.063951 CGTTCCCGTCGACGAAGAAG 61.064 60.000 37.65 24.38 41.53 2.85
252 253 1.081906 CGTTCCCGTCGACGAAGAA 60.082 57.895 37.65 32.04 41.53 2.52
253 254 2.253758 ACGTTCCCGTCGACGAAGA 61.254 57.895 37.65 28.77 46.28 2.87
254 255 2.253452 ACGTTCCCGTCGACGAAG 59.747 61.111 37.65 27.07 46.28 3.79
266 267 0.520404 TACAGTGCGAGGAGACGTTC 59.480 55.000 0.00 0.00 35.59 3.95
267 268 1.135373 CATACAGTGCGAGGAGACGTT 60.135 52.381 0.00 0.00 35.59 3.99
268 269 0.452184 CATACAGTGCGAGGAGACGT 59.548 55.000 0.00 0.00 35.59 4.34
269 270 0.867753 GCATACAGTGCGAGGAGACG 60.868 60.000 0.00 0.00 45.23 4.18
270 271 2.964911 GCATACAGTGCGAGGAGAC 58.035 57.895 0.00 0.00 45.23 3.36
288 289 0.878523 TTAGGATTTCCGGCGATGCG 60.879 55.000 9.30 0.00 42.08 4.73
289 290 1.305201 TTTAGGATTTCCGGCGATGC 58.695 50.000 9.30 0.00 42.08 3.91
290 291 5.682943 TTATTTTAGGATTTCCGGCGATG 57.317 39.130 9.30 0.00 42.08 3.84
291 292 5.335661 GCATTATTTTAGGATTTCCGGCGAT 60.336 40.000 9.30 0.00 42.08 4.58
292 293 4.023536 GCATTATTTTAGGATTTCCGGCGA 60.024 41.667 9.30 0.00 42.08 5.54
293 294 4.226761 GCATTATTTTAGGATTTCCGGCG 58.773 43.478 0.00 0.00 42.08 6.46
294 295 4.023536 TCGCATTATTTTAGGATTTCCGGC 60.024 41.667 0.00 0.00 42.08 6.13
295 296 5.682943 TCGCATTATTTTAGGATTTCCGG 57.317 39.130 0.00 0.00 42.08 5.14
296 297 7.414436 TCTTTCGCATTATTTTAGGATTTCCG 58.586 34.615 0.00 0.00 42.08 4.30
297 298 9.399403 GATCTTTCGCATTATTTTAGGATTTCC 57.601 33.333 0.00 0.00 0.00 3.13
298 299 9.950680 TGATCTTTCGCATTATTTTAGGATTTC 57.049 29.630 0.00 0.00 0.00 2.17
302 303 9.567848 GTTTTGATCTTTCGCATTATTTTAGGA 57.432 29.630 0.00 0.00 0.00 2.94
303 304 9.352784 TGTTTTGATCTTTCGCATTATTTTAGG 57.647 29.630 0.00 0.00 0.00 2.69
305 306 9.906660 ACTGTTTTGATCTTTCGCATTATTTTA 57.093 25.926 0.00 0.00 0.00 1.52
306 307 8.816640 ACTGTTTTGATCTTTCGCATTATTTT 57.183 26.923 0.00 0.00 0.00 1.82
307 308 8.816640 AACTGTTTTGATCTTTCGCATTATTT 57.183 26.923 0.00 0.00 0.00 1.40
310 311 9.906660 AAATAACTGTTTTGATCTTTCGCATTA 57.093 25.926 0.00 0.00 0.00 1.90
311 312 8.816640 AAATAACTGTTTTGATCTTTCGCATT 57.183 26.923 0.00 0.00 0.00 3.56
312 313 8.081633 TGAAATAACTGTTTTGATCTTTCGCAT 58.918 29.630 0.00 0.00 0.00 4.73
313 314 7.421599 TGAAATAACTGTTTTGATCTTTCGCA 58.578 30.769 0.00 0.00 0.00 5.10
314 315 7.409767 GCTGAAATAACTGTTTTGATCTTTCGC 60.410 37.037 0.00 4.73 0.00 4.70
315 316 7.061094 GGCTGAAATAACTGTTTTGATCTTTCG 59.939 37.037 0.00 0.00 0.00 3.46
316 317 7.061094 CGGCTGAAATAACTGTTTTGATCTTTC 59.939 37.037 0.00 1.08 0.00 2.62
317 318 6.863126 CGGCTGAAATAACTGTTTTGATCTTT 59.137 34.615 0.00 0.00 0.00 2.52
318 319 6.381801 CGGCTGAAATAACTGTTTTGATCTT 58.618 36.000 0.00 0.00 0.00 2.40
319 320 5.619981 GCGGCTGAAATAACTGTTTTGATCT 60.620 40.000 0.00 0.00 0.00 2.75
320 321 4.558860 GCGGCTGAAATAACTGTTTTGATC 59.441 41.667 0.00 0.00 0.00 2.92
321 322 4.022416 TGCGGCTGAAATAACTGTTTTGAT 60.022 37.500 0.00 0.00 0.00 2.57
322 323 3.316588 TGCGGCTGAAATAACTGTTTTGA 59.683 39.130 0.00 0.00 0.00 2.69
323 324 3.637432 TGCGGCTGAAATAACTGTTTTG 58.363 40.909 0.00 0.00 0.00 2.44
324 325 3.857010 GCTGCGGCTGAAATAACTGTTTT 60.857 43.478 11.21 0.00 35.22 2.43
325 326 2.351738 GCTGCGGCTGAAATAACTGTTT 60.352 45.455 11.21 0.00 35.22 2.83
326 327 1.200020 GCTGCGGCTGAAATAACTGTT 59.800 47.619 11.21 0.00 35.22 3.16
327 328 0.804989 GCTGCGGCTGAAATAACTGT 59.195 50.000 11.21 0.00 35.22 3.55
328 329 3.611433 GCTGCGGCTGAAATAACTG 57.389 52.632 11.21 0.00 35.22 3.16
339 340 2.256461 CAACTGGAAAGCTGCGGC 59.744 61.111 10.33 10.33 39.06 6.53
340 341 2.256461 GCAACTGGAAAGCTGCGG 59.744 61.111 0.00 0.00 0.00 5.69
341 342 2.256461 GGCAACTGGAAAGCTGCG 59.744 61.111 0.00 0.00 35.60 5.18
342 343 1.288127 CTGGCAACTGGAAAGCTGC 59.712 57.895 0.00 0.00 37.61 5.25
343 344 1.035139 AACTGGCAACTGGAAAGCTG 58.965 50.000 0.00 0.00 40.36 4.24
344 345 1.410153 CAAACTGGCAACTGGAAAGCT 59.590 47.619 0.00 0.00 40.36 3.74
345 346 1.856802 CAAACTGGCAACTGGAAAGC 58.143 50.000 0.00 0.00 40.36 3.51
346 347 1.136695 TGCAAACTGGCAACTGGAAAG 59.863 47.619 0.00 0.00 41.65 2.62
347 348 1.134848 GTGCAAACTGGCAACTGGAAA 60.135 47.619 0.00 0.00 46.93 3.13
348 349 0.459489 GTGCAAACTGGCAACTGGAA 59.541 50.000 0.00 0.00 46.93 3.53
349 350 0.395586 AGTGCAAACTGGCAACTGGA 60.396 50.000 0.00 0.00 46.93 3.86
350 351 0.461135 AAGTGCAAACTGGCAACTGG 59.539 50.000 0.00 0.00 46.93 4.00
351 352 1.928503 CAAAGTGCAAACTGGCAACTG 59.071 47.619 0.00 0.00 46.93 3.16
352 353 1.740043 GCAAAGTGCAAACTGGCAACT 60.740 47.619 0.00 0.00 46.93 3.16
353 354 0.652071 GCAAAGTGCAAACTGGCAAC 59.348 50.000 0.00 0.00 46.93 4.17
354 355 3.062585 GCAAAGTGCAAACTGGCAA 57.937 47.368 0.00 0.00 46.93 4.52
355 356 4.831698 GCAAAGTGCAAACTGGCA 57.168 50.000 0.00 0.00 44.26 4.92
364 365 3.670377 GGGACGGGTGCAAAGTGC 61.670 66.667 0.00 0.00 45.29 4.40
400 401 1.500396 GGATGTTGTCCCGTTTCGC 59.500 57.895 0.00 0.00 41.50 4.70
449 458 2.113139 CCGGTTTCCACAGTGCCT 59.887 61.111 0.00 0.00 0.00 4.75
544 578 1.227089 CTGCGGTTCCATCCTCTCG 60.227 63.158 0.00 0.00 0.00 4.04
550 584 3.134127 GTGCCCTGCGGTTCCATC 61.134 66.667 0.00 0.00 0.00 3.51
551 585 3.925630 CTGTGCCCTGCGGTTCCAT 62.926 63.158 0.00 0.00 0.00 3.41
552 586 4.641645 CTGTGCCCTGCGGTTCCA 62.642 66.667 0.00 0.00 0.00 3.53
553 587 4.329545 TCTGTGCCCTGCGGTTCC 62.330 66.667 0.00 0.00 0.00 3.62
554 588 2.743928 CTCTGTGCCCTGCGGTTC 60.744 66.667 0.00 0.00 0.00 3.62
758 806 4.798682 GGAGGGGAGGAGCGGGAA 62.799 72.222 0.00 0.00 0.00 3.97
763 817 2.835895 GAGACGGAGGGGAGGAGC 60.836 72.222 0.00 0.00 0.00 4.70
765 819 2.554291 TTGGAGACGGAGGGGAGGA 61.554 63.158 0.00 0.00 0.00 3.71
779 833 3.998672 GTGAGGTCCGGCGTTGGA 61.999 66.667 6.01 0.00 35.04 3.53
820 874 0.035739 TGTGGCGGGAGTAAACCTTC 59.964 55.000 0.00 0.00 0.00 3.46
959 1022 1.227263 GGACGCACACACACTGACT 60.227 57.895 0.00 0.00 0.00 3.41
960 1023 2.585869 CGGACGCACACACACTGAC 61.586 63.158 0.00 0.00 0.00 3.51
961 1024 2.279186 CGGACGCACACACACTGA 60.279 61.111 0.00 0.00 0.00 3.41
962 1025 2.584970 ACGGACGCACACACACTG 60.585 61.111 0.00 0.00 0.00 3.66
963 1026 2.584970 CACGGACGCACACACACT 60.585 61.111 0.00 0.00 0.00 3.55
990 1053 4.530857 CCCGTCATCCCGTGCTCC 62.531 72.222 0.00 0.00 0.00 4.70
1233 1296 2.202810 GAGCCGGCTGAGTACTGC 60.203 66.667 38.41 13.51 39.64 4.40
1242 1305 3.854669 CCTTCATCGGAGCCGGCT 61.855 66.667 33.48 33.48 40.25 5.52
1449 1568 4.101119 AGAAGAACTCGGAAGAAAGGAACA 59.899 41.667 0.00 0.00 41.32 3.18
1455 1574 4.980434 CGTGTTAGAAGAACTCGGAAGAAA 59.020 41.667 4.47 0.00 41.32 2.52
1459 1578 2.034939 TGCGTGTTAGAAGAACTCGGAA 59.965 45.455 12.16 0.00 35.30 4.30
1460 1579 1.610038 TGCGTGTTAGAAGAACTCGGA 59.390 47.619 12.16 7.73 37.54 4.55
1481 1600 0.763652 ATCACCTGCTGGATGGCTAG 59.236 55.000 17.64 0.00 37.04 3.42
1552 1671 4.324471 TCGGCTGCATTGCTGAAT 57.676 50.000 18.44 0.00 44.34 2.57
1554 1673 1.300971 GAAGTCGGCTGCATTGCTGA 61.301 55.000 18.44 5.40 45.01 4.26
1616 1735 0.165079 CGTTAATGCGGCTTGACGTT 59.835 50.000 15.71 0.00 34.54 3.99
1661 1780 1.217882 ATGCTACGCGAATTAGCCAC 58.782 50.000 15.93 0.00 41.20 5.01
1749 1871 4.437587 CTTGGCAGGAGCAGGGGG 62.438 72.222 0.00 0.00 44.61 5.40
1800 1925 1.678970 ATCAGGGCACGGAAAAGGC 60.679 57.895 0.00 0.00 0.00 4.35
1813 1939 3.129502 CTGCCGGTGTGCATCAGG 61.130 66.667 1.90 0.00 41.16 3.86
1855 1981 9.481340 AAGAGAAGAACCAAAAATATTTTGAGC 57.519 29.630 14.04 3.48 0.00 4.26
1893 2019 1.112916 TGTCACTCCCGTCTCTGCAA 61.113 55.000 0.00 0.00 0.00 4.08
1906 2032 0.036952 CACCTCGCCATCTTGTCACT 60.037 55.000 0.00 0.00 0.00 3.41
1919 2045 2.159819 CTCACCACCTCACCACCTCG 62.160 65.000 0.00 0.00 0.00 4.63
1930 2056 4.008933 AGCGACAGCCTCACCACC 62.009 66.667 0.00 0.00 46.67 4.61
1932 2058 2.807107 AACAGCGACAGCCTCACCA 61.807 57.895 0.00 0.00 46.67 4.17
1933 2059 2.031163 AACAGCGACAGCCTCACC 59.969 61.111 0.00 0.00 46.67 4.02
1934 2060 2.320587 CCAACAGCGACAGCCTCAC 61.321 63.158 0.00 0.00 46.67 3.51
1935 2061 2.031012 CCAACAGCGACAGCCTCA 59.969 61.111 0.00 0.00 46.67 3.86
1936 2062 2.031163 ACCAACAGCGACAGCCTC 59.969 61.111 0.00 0.00 46.67 4.70
1937 2063 2.281070 CACCAACAGCGACAGCCT 60.281 61.111 0.00 0.00 46.67 4.58
1941 2067 2.591429 CCAGCACCAACAGCGACA 60.591 61.111 0.00 0.00 37.01 4.35
1990 2121 0.674895 CCCGGCTTCCAAGAACAGAG 60.675 60.000 0.00 0.00 0.00 3.35
2040 2174 2.671177 AACGCAGCGCACACTCATC 61.671 57.895 16.61 0.00 0.00 2.92
2250 2384 5.590530 AAGAGATATCACTCTCGCTTGTT 57.409 39.130 5.32 0.00 45.08 2.83
2260 2394 5.316167 TGTGGTGCAAAAAGAGATATCACT 58.684 37.500 5.32 0.42 0.00 3.41
2304 2438 0.542938 AGATAGCTAGGGCGCCATCA 60.543 55.000 30.85 11.47 44.37 3.07
2311 2445 3.496331 ACTTGAGAGAGATAGCTAGGGC 58.504 50.000 0.00 0.00 39.06 5.19
2330 2471 1.742831 TGACTTCAACGCTTGCAAACT 59.257 42.857 0.00 0.00 0.00 2.66
2392 2544 5.415701 AGTTCTAGAAGAGAAGAGAGCAGTG 59.584 44.000 5.12 0.00 45.06 3.66
2430 2585 2.032054 TGTTGCTTGCTCTGAACTTTCG 59.968 45.455 0.00 0.00 0.00 3.46
2434 2589 0.940126 CGTGTTGCTTGCTCTGAACT 59.060 50.000 0.00 0.00 0.00 3.01
2456 2615 3.490896 CCATACTTGGTCGACATTGATCG 59.509 47.826 18.91 0.27 38.30 3.69
2494 2653 1.974028 TGGACAGGGTAATGGGCTAA 58.026 50.000 0.00 0.00 0.00 3.09
2548 2707 1.515736 GCTTGGCAATTGCTCTCGC 60.516 57.895 28.42 20.65 41.70 5.03
2555 2714 0.235404 GCAAAACGGCTTGGCAATTG 59.765 50.000 0.00 0.00 0.00 2.32
2556 2715 1.220817 CGCAAAACGGCTTGGCAATT 61.221 50.000 0.00 0.00 38.44 2.32
2575 2734 0.242825 GAGTTTTTACAAGCGCCCCC 59.757 55.000 2.29 0.00 0.00 5.40
2581 2740 8.568794 AGAATAGAGTTTGGAGTTTTTACAAGC 58.431 33.333 0.00 0.00 0.00 4.01
2593 2752 8.609617 TGAATAAGAGGAGAATAGAGTTTGGA 57.390 34.615 0.00 0.00 0.00 3.53
2597 2756 9.218525 TCCATTGAATAAGAGGAGAATAGAGTT 57.781 33.333 0.00 0.00 0.00 3.01
2604 2763 7.504403 GTCTCATCCATTGAATAAGAGGAGAA 58.496 38.462 17.66 5.71 44.79 2.87
2605 2764 6.239148 CGTCTCATCCATTGAATAAGAGGAGA 60.239 42.308 14.10 14.10 42.13 3.71
2616 2775 4.760530 AAAGATCCGTCTCATCCATTGA 57.239 40.909 0.00 0.00 32.15 2.57
2617 2776 4.497006 GCAAAAGATCCGTCTCATCCATTG 60.497 45.833 0.00 0.00 32.15 2.82
2630 2789 2.556622 TCAAAACGGAGGCAAAAGATCC 59.443 45.455 0.00 0.00 0.00 3.36
2653 2812 9.529325 GTTTTTACCTTGCAGTTAGAGATTTTT 57.471 29.630 0.00 0.00 0.00 1.94
2657 2816 7.224297 TCAGTTTTTACCTTGCAGTTAGAGAT 58.776 34.615 0.00 0.00 0.00 2.75
2702 3022 5.348997 GTCTAGTTAAGCTTTGCTGTGTAGG 59.651 44.000 3.20 0.00 39.62 3.18
2706 3026 7.602517 ATTAGTCTAGTTAAGCTTTGCTGTG 57.397 36.000 3.20 1.99 39.62 3.66
2776 3102 5.333513 TGTTACCATCAAACACGACAAAAC 58.666 37.500 0.00 0.00 32.07 2.43
2804 3130 4.892965 TGCCCTGCGTGCCACTTT 62.893 61.111 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.