Multiple sequence alignment - TraesCS4D01G259800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G259800 chr4D 100.000 5489 0 0 1 5489 428965392 428970880 0.000000e+00 10137
1 TraesCS4D01G259800 chr4B 94.135 2012 74 17 1 1989 527003899 527005889 0.000000e+00 3022
2 TraesCS4D01G259800 chr4B 99.106 1231 11 0 1988 3218 527005983 527007213 0.000000e+00 2213
3 TraesCS4D01G259800 chr4B 88.614 1862 107 47 3697 5489 527007701 527009526 0.000000e+00 2167
4 TraesCS4D01G259800 chr4B 96.107 488 14 3 3317 3804 527007214 527007696 0.000000e+00 791
5 TraesCS4D01G259800 chr4B 82.450 302 17 15 171 446 365509576 365509285 1.190000e-56 231
6 TraesCS4D01G259800 chr4B 81.271 299 21 14 173 446 226623236 226623524 5.570000e-50 209
7 TraesCS4D01G259800 chr4A 95.909 1809 51 7 1420 3226 37305533 37303746 0.000000e+00 2909
8 TraesCS4D01G259800 chr4A 90.179 1680 105 27 3866 5489 37303229 37301554 0.000000e+00 2134
9 TraesCS4D01G259800 chr4A 90.509 1296 53 24 143 1421 37306869 37305627 0.000000e+00 1648
10 TraesCS4D01G259800 chr4A 93.361 482 20 7 3321 3796 37303745 37303270 0.000000e+00 702
11 TraesCS4D01G259800 chr4A 82.042 284 16 13 188 446 667249973 667249700 5.570000e-50 209
12 TraesCS4D01G259800 chr4A 82.042 284 16 13 188 446 667272009 667271736 5.570000e-50 209
13 TraesCS4D01G259800 chr4A 90.972 144 11 1 1 142 37307169 37307026 5.610000e-45 193
14 TraesCS4D01G259800 chr4A 89.256 121 5 3 3220 3333 612580414 612580295 1.590000e-30 145
15 TraesCS4D01G259800 chr5A 82.943 299 16 14 173 446 639745170 639744882 2.560000e-58 237
16 TraesCS4D01G259800 chr6D 82.274 299 18 14 173 446 83694729 83695017 5.530000e-55 226
17 TraesCS4D01G259800 chr6D 89.256 121 5 3 3220 3333 77986118 77986237 1.590000e-30 145
18 TraesCS4D01G259800 chr6D 88.710 124 6 3 3217 3333 308219409 308219531 1.590000e-30 145
19 TraesCS4D01G259800 chr2B 82.155 297 18 13 173 444 47555876 47556162 7.160000e-54 222
20 TraesCS4D01G259800 chr2B 81.879 298 19 13 174 446 766616440 766616727 9.260000e-53 219
21 TraesCS4D01G259800 chr2B 80.268 299 24 16 173 446 81027668 81027380 5.610000e-45 193
22 TraesCS4D01G259800 chr6B 81.757 296 25 18 173 446 648563583 648563871 2.570000e-53 220
23 TraesCS4D01G259800 chr6B 81.605 299 20 11 173 446 697573198 697572910 1.200000e-51 215
24 TraesCS4D01G259800 chr6B 81.605 299 20 11 173 446 697597218 697596930 1.200000e-51 215
25 TraesCS4D01G259800 chr6B 92.727 110 1 2 3220 3322 460495303 460495412 9.520000e-33 152
26 TraesCS4D01G259800 chr6B 92.661 109 1 2 3220 3321 692964191 692964083 3.430000e-32 150
27 TraesCS4D01G259800 chr3B 81.940 299 19 11 173 446 755583540 755583252 2.570000e-53 220
28 TraesCS4D01G259800 chr3B 91.150 113 3 2 3216 3321 205478181 205478069 4.430000e-31 147
29 TraesCS4D01G259800 chr7D 93.458 107 0 2 3220 3319 517821327 517821221 9.520000e-33 152
30 TraesCS4D01G259800 chr5D 91.228 114 3 2 3217 3323 257163168 257163281 1.230000e-31 148
31 TraesCS4D01G259800 chr5B 92.523 107 1 2 3220 3319 632580524 632580630 4.430000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G259800 chr4D 428965392 428970880 5488 False 10137.00 10137 100.0000 1 5489 1 chr4D.!!$F1 5488
1 TraesCS4D01G259800 chr4B 527003899 527009526 5627 False 2048.25 3022 94.4905 1 5489 4 chr4B.!!$F2 5488
2 TraesCS4D01G259800 chr4A 37301554 37307169 5615 True 1517.20 2909 92.1860 1 5489 5 chr4A.!!$R4 5488

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
335 517 1.095600 CAATGAGCTGCAGCACTGAT 58.904 50.0 38.24 20.56 45.16 2.90 F
1683 1978 0.537188 ATCCGGTAACTGGAGCAGTG 59.463 55.0 0.00 0.00 44.62 3.66 F
3237 3627 0.249398 CACTCCCTCCGTTCGGAATT 59.751 55.0 14.79 0.00 33.41 2.17 F
3771 4165 0.108615 TGTGGCCACAAAACGTTTGG 60.109 50.0 36.10 14.67 38.56 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1863 2158 1.277557 GACACTGGAACTCTCCTGCAT 59.722 52.381 0.00 0.00 42.93 3.96 R
3301 3691 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55 R
4458 5001 0.588252 ACTGAGCATGCGTGTTTGAC 59.412 50.000 13.01 0.00 0.00 3.18 R
4673 5239 0.741221 GTCCCGTGCCTCACTCATTC 60.741 60.000 0.00 0.00 31.34 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 72 4.962995 TGGGTTTTCTCAATTTACCAACCA 59.037 37.500 0.00 0.00 34.96 3.67
127 130 5.801531 TCCGCTGGTAACACTGATATATT 57.198 39.130 0.00 0.00 46.17 1.28
132 135 6.073765 CGCTGGTAACACTGATATATTTCACC 60.074 42.308 0.00 0.00 46.17 4.02
137 140 7.170998 GGTAACACTGATATATTTCACCCGAAG 59.829 40.741 0.00 0.00 31.28 3.79
148 307 5.670792 TTTCACCCGAAGATACAGTACAT 57.329 39.130 0.00 0.00 31.28 2.29
159 318 8.015087 CGAAGATACAGTACATTTGAAGCAAAA 58.985 33.333 0.00 0.00 36.90 2.44
160 319 9.677567 GAAGATACAGTACATTTGAAGCAAAAA 57.322 29.630 0.00 0.00 36.90 1.94
162 321 9.630098 AGATACAGTACATTTGAAGCAAAAATG 57.370 29.630 13.90 13.90 46.06 2.32
163 322 6.529463 ACAGTACATTTGAAGCAAAAATGC 57.471 33.333 14.89 0.00 45.02 3.56
164 323 6.047870 ACAGTACATTTGAAGCAAAAATGCA 58.952 32.000 14.89 0.00 45.02 3.96
165 324 6.201425 ACAGTACATTTGAAGCAAAAATGCAG 59.799 34.615 14.89 7.93 45.02 4.41
166 325 6.201425 CAGTACATTTGAAGCAAAAATGCAGT 59.799 34.615 14.89 6.24 45.02 4.40
181 340 4.889832 ATGCAGTTGCTATTGCTAACTC 57.110 40.909 15.75 8.89 42.66 3.01
206 365 3.899052 TGTTAACCCAGACTAATCCGG 57.101 47.619 2.48 0.00 0.00 5.14
315 491 5.009854 ACAAAACCAAAGACCATGTCAAG 57.990 39.130 0.00 0.00 34.60 3.02
335 517 1.095600 CAATGAGCTGCAGCACTGAT 58.904 50.000 38.24 20.56 45.16 2.90
354 536 5.221925 ACTGATTTAGGAGCAGAAGAAACCA 60.222 40.000 0.00 0.00 33.94 3.67
579 761 3.083997 CCGAAGCCCCCTACAGCT 61.084 66.667 0.00 0.00 42.40 4.24
582 764 1.327690 CGAAGCCCCCTACAGCTACA 61.328 60.000 0.00 0.00 38.74 2.74
757 952 1.227823 CGGTTGTGCTCTGGGTTGA 60.228 57.895 0.00 0.00 0.00 3.18
1147 1343 2.803492 GCGTAATTGCCTACTCTCCCTG 60.803 54.545 0.00 0.00 0.00 4.45
1199 1395 3.350833 CTGGAAGATTTGCCTGCTTACT 58.649 45.455 0.00 0.00 34.07 2.24
1284 1480 5.772393 TTCTTCCTTAGGGCATGAACTTA 57.228 39.130 0.00 0.00 0.00 2.24
1458 1752 3.198635 CCCTCTTCTTCAGCCACTGATTA 59.801 47.826 0.00 0.00 40.39 1.75
1549 1843 4.327357 CGTCTTCGATTTGATGTAAGTGCT 59.673 41.667 0.00 0.00 39.71 4.40
1554 1848 5.730550 TCGATTTGATGTAAGTGCTTAGGT 58.269 37.500 0.00 0.00 0.00 3.08
1555 1849 6.170506 TCGATTTGATGTAAGTGCTTAGGTT 58.829 36.000 0.00 0.00 0.00 3.50
1556 1850 6.092122 TCGATTTGATGTAAGTGCTTAGGTTG 59.908 38.462 0.00 0.00 0.00 3.77
1558 1852 6.952773 TTTGATGTAAGTGCTTAGGTTGTT 57.047 33.333 0.00 0.00 0.00 2.83
1563 1857 5.925509 TGTAAGTGCTTAGGTTGTTCTTCT 58.074 37.500 0.00 0.00 0.00 2.85
1592 1886 5.346181 AACTTATTGGTAGGAGAGCTGAC 57.654 43.478 0.00 0.00 0.00 3.51
1598 1892 1.903183 GGTAGGAGAGCTGACAAGGTT 59.097 52.381 0.00 0.00 33.19 3.50
1612 1907 6.625960 GCTGACAAGGTTGGGATTCTTATTTC 60.626 42.308 0.00 0.00 0.00 2.17
1683 1978 0.537188 ATCCGGTAACTGGAGCAGTG 59.463 55.000 0.00 0.00 44.62 3.66
1789 2084 2.819608 GCCTGAACCAAATAGAACTGCA 59.180 45.455 0.00 0.00 0.00 4.41
1790 2085 3.366374 GCCTGAACCAAATAGAACTGCAC 60.366 47.826 0.00 0.00 0.00 4.57
1791 2086 3.120199 CCTGAACCAAATAGAACTGCACG 60.120 47.826 0.00 0.00 0.00 5.34
1792 2087 3.734463 TGAACCAAATAGAACTGCACGA 58.266 40.909 0.00 0.00 0.00 4.35
1793 2088 4.130857 TGAACCAAATAGAACTGCACGAA 58.869 39.130 0.00 0.00 0.00 3.85
1837 2132 4.937620 TGATGTTAGTTGATCTTCTGGTGC 59.062 41.667 0.00 0.00 0.00 5.01
1939 2234 6.129431 CGCATATAGTTGCTGTAAAGACTACG 60.129 42.308 0.00 0.00 40.54 3.51
2025 2415 3.088532 GGTGGTCAATTTGGTATGCTCA 58.911 45.455 0.00 0.00 0.00 4.26
2050 2440 5.107133 AGCTGATTGATTATTGCTTTGTGC 58.893 37.500 0.00 0.00 43.25 4.57
2119 2509 0.618458 TGCTAACCGATGAGCCCTTT 59.382 50.000 0.00 0.00 37.94 3.11
2554 2944 1.838112 TAGCTTTTCTGCATGGTGGG 58.162 50.000 0.00 0.00 34.99 4.61
2958 3348 3.482722 TTCACGTCGACTTCCTATGAC 57.517 47.619 14.70 0.00 0.00 3.06
3218 3608 7.122650 TGTCCATTCAATCATTCCCTTCTTTAC 59.877 37.037 0.00 0.00 0.00 2.01
3219 3609 7.122650 GTCCATTCAATCATTCCCTTCTTTACA 59.877 37.037 0.00 0.00 0.00 2.41
3220 3610 7.122650 TCCATTCAATCATTCCCTTCTTTACAC 59.877 37.037 0.00 0.00 0.00 2.90
3221 3611 7.123247 CCATTCAATCATTCCCTTCTTTACACT 59.877 37.037 0.00 0.00 0.00 3.55
3222 3612 7.687941 TTCAATCATTCCCTTCTTTACACTC 57.312 36.000 0.00 0.00 0.00 3.51
3223 3613 6.180472 TCAATCATTCCCTTCTTTACACTCC 58.820 40.000 0.00 0.00 0.00 3.85
3224 3614 4.569719 TCATTCCCTTCTTTACACTCCC 57.430 45.455 0.00 0.00 0.00 4.30
3225 3615 4.175962 TCATTCCCTTCTTTACACTCCCT 58.824 43.478 0.00 0.00 0.00 4.20
3226 3616 4.225267 TCATTCCCTTCTTTACACTCCCTC 59.775 45.833 0.00 0.00 0.00 4.30
3227 3617 2.547990 TCCCTTCTTTACACTCCCTCC 58.452 52.381 0.00 0.00 0.00 4.30
3228 3618 1.207329 CCCTTCTTTACACTCCCTCCG 59.793 57.143 0.00 0.00 0.00 4.63
3229 3619 1.900486 CCTTCTTTACACTCCCTCCGT 59.100 52.381 0.00 0.00 0.00 4.69
3230 3620 2.302157 CCTTCTTTACACTCCCTCCGTT 59.698 50.000 0.00 0.00 0.00 4.44
3231 3621 3.586892 CTTCTTTACACTCCCTCCGTTC 58.413 50.000 0.00 0.00 0.00 3.95
3232 3622 1.542915 TCTTTACACTCCCTCCGTTCG 59.457 52.381 0.00 0.00 0.00 3.95
3233 3623 0.604578 TTTACACTCCCTCCGTTCGG 59.395 55.000 4.74 4.74 0.00 4.30
3234 3624 0.251297 TTACACTCCCTCCGTTCGGA 60.251 55.000 13.34 13.34 0.00 4.55
3235 3625 0.251297 TACACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
3236 3626 0.903454 ACACTCCCTCCGTTCGGAAT 60.903 55.000 14.79 0.00 33.41 3.01
3237 3627 0.249398 CACTCCCTCCGTTCGGAATT 59.751 55.000 14.79 0.00 33.41 2.17
3238 3628 1.479323 CACTCCCTCCGTTCGGAATTA 59.521 52.381 14.79 2.82 33.41 1.40
3239 3629 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3240 3630 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3241 3631 1.753073 TCCCTCCGTTCGGAATTACTC 59.247 52.381 14.79 0.00 33.41 2.59
3242 3632 1.535437 CCCTCCGTTCGGAATTACTCG 60.535 57.143 14.79 1.97 33.41 4.18
3243 3633 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18
3244 3634 2.448219 CTCCGTTCGGAATTACTCGTC 58.552 52.381 14.79 0.00 33.41 4.20
3245 3635 1.133025 TCCGTTCGGAATTACTCGTCC 59.867 52.381 11.66 0.00 0.00 4.79
3246 3636 1.135315 CCGTTCGGAATTACTCGTCCA 60.135 52.381 5.19 0.00 33.10 4.02
3247 3637 2.598589 CGTTCGGAATTACTCGTCCAA 58.401 47.619 0.00 0.00 33.10 3.53
3248 3638 2.597305 CGTTCGGAATTACTCGTCCAAG 59.403 50.000 0.00 0.00 33.10 3.61
3249 3639 3.671433 CGTTCGGAATTACTCGTCCAAGA 60.671 47.826 0.00 0.00 33.10 3.02
3250 3640 4.240096 GTTCGGAATTACTCGTCCAAGAA 58.760 43.478 0.00 0.00 33.10 2.52
3251 3641 4.524316 TCGGAATTACTCGTCCAAGAAA 57.476 40.909 0.00 0.00 33.10 2.52
3252 3642 5.080969 TCGGAATTACTCGTCCAAGAAAT 57.919 39.130 0.00 0.00 33.10 2.17
3253 3643 5.484715 TCGGAATTACTCGTCCAAGAAATT 58.515 37.500 0.00 0.00 33.10 1.82
3254 3644 6.632909 TCGGAATTACTCGTCCAAGAAATTA 58.367 36.000 0.00 0.00 33.10 1.40
3255 3645 7.270047 TCGGAATTACTCGTCCAAGAAATTAT 58.730 34.615 0.00 0.00 33.10 1.28
3256 3646 7.223971 TCGGAATTACTCGTCCAAGAAATTATG 59.776 37.037 0.00 0.00 33.10 1.90
3257 3647 7.011109 CGGAATTACTCGTCCAAGAAATTATGT 59.989 37.037 0.00 0.00 33.10 2.29
3258 3648 9.321562 GGAATTACTCGTCCAAGAAATTATGTA 57.678 33.333 0.00 0.00 33.79 2.29
3261 3651 9.832445 ATTACTCGTCCAAGAAATTATGTATGT 57.168 29.630 0.00 0.00 0.00 2.29
3264 3654 9.832445 ACTCGTCCAAGAAATTATGTATGTATT 57.168 29.630 0.00 0.00 0.00 1.89
3292 3682 8.862325 AGTTGTAGATACATCCATTTTTGTGA 57.138 30.769 0.00 0.00 35.89 3.58
3293 3683 8.730680 AGTTGTAGATACATCCATTTTTGTGAC 58.269 33.333 0.00 0.00 35.89 3.67
3294 3684 8.511321 GTTGTAGATACATCCATTTTTGTGACA 58.489 33.333 0.00 0.00 35.89 3.58
3295 3685 8.628630 TGTAGATACATCCATTTTTGTGACAA 57.371 30.769 0.00 0.00 0.00 3.18
3296 3686 8.729756 TGTAGATACATCCATTTTTGTGACAAG 58.270 33.333 0.00 0.00 0.00 3.16
3297 3687 7.765695 AGATACATCCATTTTTGTGACAAGT 57.234 32.000 0.00 0.00 0.00 3.16
3298 3688 8.862325 AGATACATCCATTTTTGTGACAAGTA 57.138 30.769 0.00 0.00 0.00 2.24
3299 3689 9.295825 AGATACATCCATTTTTGTGACAAGTAA 57.704 29.630 0.00 0.00 0.00 2.24
3302 3692 8.816640 ACATCCATTTTTGTGACAAGTAATTC 57.183 30.769 0.00 0.00 0.00 2.17
3303 3693 7.872483 ACATCCATTTTTGTGACAAGTAATTCC 59.128 33.333 0.00 0.00 0.00 3.01
3304 3694 6.442952 TCCATTTTTGTGACAAGTAATTCCG 58.557 36.000 0.00 0.00 0.00 4.30
3305 3695 6.263392 TCCATTTTTGTGACAAGTAATTCCGA 59.737 34.615 0.00 0.00 0.00 4.55
3306 3696 6.920758 CCATTTTTGTGACAAGTAATTCCGAA 59.079 34.615 0.00 0.00 0.00 4.30
3307 3697 7.096230 CCATTTTTGTGACAAGTAATTCCGAAC 60.096 37.037 0.00 0.00 0.00 3.95
3308 3698 4.718858 TTGTGACAAGTAATTCCGAACG 57.281 40.909 0.00 0.00 0.00 3.95
3309 3699 3.061322 TGTGACAAGTAATTCCGAACGG 58.939 45.455 6.94 6.94 0.00 4.44
3310 3700 3.243805 TGTGACAAGTAATTCCGAACGGA 60.244 43.478 12.04 12.04 43.52 4.69
3311 3701 3.367025 GTGACAAGTAATTCCGAACGGAG 59.633 47.826 15.34 5.60 46.06 4.63
3312 3702 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3313 3703 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3314 3704 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3315 3705 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3438 3832 0.401979 AGGGGAGTCCATATGGGGTG 60.402 60.000 21.78 0.00 38.24 4.61
3439 3833 1.427072 GGGGAGTCCATATGGGGTGG 61.427 65.000 21.78 0.00 37.22 4.61
3440 3834 0.697854 GGGAGTCCATATGGGGTGGT 60.698 60.000 21.78 2.13 37.96 4.16
3527 3921 0.261696 ATTCTGGGCCCCATACCAAC 59.738 55.000 22.27 0.00 36.09 3.77
3771 4165 0.108615 TGTGGCCACAAAACGTTTGG 60.109 50.000 36.10 14.67 38.56 3.28
3802 4309 1.308998 GGCACAACTGCAGTACACTT 58.691 50.000 22.01 0.00 46.28 3.16
3819 4326 5.235305 ACACTTGTCTTTTAAGCACTGTG 57.765 39.130 2.76 2.76 0.00 3.66
3821 4328 5.183140 ACACTTGTCTTTTAAGCACTGTGTT 59.817 36.000 9.86 0.00 32.88 3.32
3823 4330 6.251376 CACTTGTCTTTTAAGCACTGTGTTTC 59.749 38.462 13.23 0.00 0.00 2.78
3824 4331 5.888691 TGTCTTTTAAGCACTGTGTTTCA 57.111 34.783 13.23 0.00 0.00 2.69
3825 4332 6.449635 TGTCTTTTAAGCACTGTGTTTCAT 57.550 33.333 13.23 0.00 0.00 2.57
3827 4334 7.990917 TGTCTTTTAAGCACTGTGTTTCATAA 58.009 30.769 13.23 4.65 0.00 1.90
3828 4335 8.629158 TGTCTTTTAAGCACTGTGTTTCATAAT 58.371 29.630 13.23 0.00 0.00 1.28
3868 4377 9.562583 TTTATGTATTGTTTTCGGCATAGAAAC 57.437 29.630 1.52 0.00 39.53 2.78
3869 4378 6.561737 TGTATTGTTTTCGGCATAGAAACA 57.438 33.333 0.00 0.00 39.53 2.83
3871 4380 7.247728 TGTATTGTTTTCGGCATAGAAACATC 58.752 34.615 7.44 4.16 39.53 3.06
3873 4382 5.295431 TGTTTTCGGCATAGAAACATCTG 57.705 39.130 0.00 0.00 39.53 2.90
3876 4405 3.885724 TCGGCATAGAAACATCTGACA 57.114 42.857 0.00 0.00 0.00 3.58
3884 4413 7.013655 GGCATAGAAACATCTGACATGGTATTT 59.986 37.037 0.00 0.00 0.00 1.40
3893 4422 7.233348 ACATCTGACATGGTATTTCTGGTTTTT 59.767 33.333 0.00 0.00 0.00 1.94
4024 4555 4.082895 GGATGAAGATCATGTAATGCTGCC 60.083 45.833 0.00 0.00 46.21 4.85
4347 4889 3.469008 TTCTTCTCGGAAGAAACAGCA 57.531 42.857 20.05 3.98 40.95 4.41
4375 4917 9.243637 GTTGAAACTTTGTAACATTTGAGCATA 57.756 29.630 0.00 0.00 0.00 3.14
4391 4933 1.811965 GCATATGCGCCCATGTTATGA 59.188 47.619 12.82 0.00 32.85 2.15
4422 4964 0.803768 CTGTCCAGAATGCGGTCTCG 60.804 60.000 0.00 0.00 39.81 4.04
4432 4974 2.505777 CGGTCTCGCAGCTCACAG 60.506 66.667 0.00 0.00 0.00 3.66
4458 5001 7.914346 GCAGATTTTTCAGAATCCACATCTTAG 59.086 37.037 0.00 0.00 36.84 2.18
4481 5024 2.169832 AACACGCATGCTCAGTACTT 57.830 45.000 17.13 0.00 0.00 2.24
4497 5040 8.378172 CTCAGTACTTGAGTAAATGTTTCCAA 57.622 34.615 11.84 0.00 46.77 3.53
4507 5050 8.956426 TGAGTAAATGTTTCCAATGGTCTATTC 58.044 33.333 0.00 0.00 0.00 1.75
4508 5051 9.178758 GAGTAAATGTTTCCAATGGTCTATTCT 57.821 33.333 0.00 0.00 0.00 2.40
4616 5182 2.282555 CGCATACAGATCTTGTGTTCCG 59.717 50.000 0.00 0.00 41.10 4.30
4632 5198 5.753438 TGTGTTCCGCTAAGAATTATGCTAG 59.247 40.000 0.00 0.00 0.00 3.42
4640 5206 7.868415 CCGCTAAGAATTATGCTAGTAGAAAGT 59.132 37.037 0.00 0.00 0.00 2.66
4673 5239 7.482654 TCAGAATGATGTTAATAGAAAGGCG 57.517 36.000 0.00 0.00 42.56 5.52
4687 5253 0.674895 AAGGCGAATGAGTGAGGCAC 60.675 55.000 0.00 0.00 34.10 5.01
4688 5254 2.456119 GGCGAATGAGTGAGGCACG 61.456 63.158 0.00 0.00 39.64 5.34
4744 5328 7.752695 AGCAGCTGTTGTTATATCTGTAAAAC 58.247 34.615 16.64 0.00 0.00 2.43
4800 5387 9.290988 TGTCAATATTGTTGTGTAGGTGTTATT 57.709 29.630 14.97 0.00 0.00 1.40
4825 5412 6.046290 ACCAACCTTACCACATAGAGTAAC 57.954 41.667 0.00 0.00 0.00 2.50
4843 5430 7.045126 GAGTAACTTAGATACTCAGGCATGT 57.955 40.000 20.09 0.00 45.52 3.21
4844 5431 7.425224 AGTAACTTAGATACTCAGGCATGTT 57.575 36.000 0.00 0.00 0.00 2.71
4848 5435 2.481441 AGATACTCAGGCATGTTGGGA 58.519 47.619 0.00 0.00 0.00 4.37
4931 5518 4.985409 GGCTAAACCAGAACGAGATCATAG 59.015 45.833 0.00 0.00 38.86 2.23
4961 5549 8.837059 GTTGCAGTAACAACTAAATTTATCACG 58.163 33.333 0.00 0.00 45.20 4.35
5018 5624 2.929641 TCTTGCAGAACATGTTCACCA 58.070 42.857 33.92 26.74 41.84 4.17
5019 5625 3.286353 TCTTGCAGAACATGTTCACCAA 58.714 40.909 33.92 30.20 41.84 3.67
5078 5684 2.248487 CTTAACGTCGACCTGTACAGC 58.752 52.381 17.86 3.87 0.00 4.40
5107 5713 7.921786 AGAATCGACCATTTGATGAACTAAA 57.078 32.000 0.00 0.00 0.00 1.85
5193 5799 0.107945 CCACTCTGCCAGCTCCTTAC 60.108 60.000 0.00 0.00 0.00 2.34
5201 5807 4.943705 TCTGCCAGCTCCTTACTTTTATTG 59.056 41.667 0.00 0.00 0.00 1.90
5203 5809 5.321102 TGCCAGCTCCTTACTTTTATTGAA 58.679 37.500 0.00 0.00 0.00 2.69
5302 5908 6.494491 TGAAATCCTTCTTGGTGTTGATGATT 59.506 34.615 0.00 0.00 37.07 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 99 2.285083 GTTACCAGCGGATGCACATAA 58.715 47.619 0.00 0.00 46.23 1.90
127 130 5.670792 AATGTACTGTATCTTCGGGTGAA 57.329 39.130 0.00 0.00 0.00 3.18
132 135 5.580691 TGCTTCAAATGTACTGTATCTTCGG 59.419 40.000 0.00 0.00 0.00 4.30
137 140 8.375465 GCATTTTTGCTTCAAATGTACTGTATC 58.625 33.333 13.73 0.00 41.72 2.24
148 307 4.275838 GCAACTGCATTTTTGCTTCAAA 57.724 36.364 16.58 0.00 43.96 2.69
159 318 4.701651 TGAGTTAGCAATAGCAACTGCATT 59.298 37.500 4.22 0.00 45.49 3.56
160 319 4.095483 GTGAGTTAGCAATAGCAACTGCAT 59.905 41.667 4.22 0.00 45.49 3.96
161 320 3.436704 GTGAGTTAGCAATAGCAACTGCA 59.563 43.478 4.22 0.00 45.49 4.41
162 321 3.686726 AGTGAGTTAGCAATAGCAACTGC 59.313 43.478 9.03 0.00 45.49 4.40
163 322 6.536582 ACATAGTGAGTTAGCAATAGCAACTG 59.463 38.462 9.03 0.00 45.49 3.16
164 323 6.644347 ACATAGTGAGTTAGCAATAGCAACT 58.356 36.000 0.00 0.00 45.49 3.16
165 324 6.910536 ACATAGTGAGTTAGCAATAGCAAC 57.089 37.500 0.00 0.00 45.49 4.17
166 325 8.879759 GTTAACATAGTGAGTTAGCAATAGCAA 58.120 33.333 0.00 0.00 45.49 3.91
181 340 5.983720 CGGATTAGTCTGGGTTAACATAGTG 59.016 44.000 8.10 0.00 0.00 2.74
315 491 1.154016 CAGTGCTGCAGCTCATTGC 60.154 57.895 36.61 19.58 44.33 3.56
335 517 4.278419 GCTTTGGTTTCTTCTGCTCCTAAA 59.722 41.667 0.00 0.00 0.00 1.85
389 571 0.953960 ACGTTCGCCCCTTGCTTTAG 60.954 55.000 0.00 0.00 38.05 1.85
579 761 2.782222 GGCGGCCATCGACTCTGTA 61.782 63.158 15.62 0.00 45.10 2.74
811 1007 3.004419 TCAGCCCGTGATAGAATAGAACG 59.996 47.826 0.00 0.00 34.33 3.95
1199 1395 9.449719 GAATCCTAAATTACCAAGAGAACAGAA 57.550 33.333 0.00 0.00 0.00 3.02
1432 1726 3.198635 CAGTGGCTGAAGAAGAGGGATTA 59.801 47.826 0.00 0.00 32.44 1.75
1458 1752 7.120285 CGTGAGCCTAATATCCAATGAAATGAT 59.880 37.037 0.00 0.00 0.00 2.45
1549 1843 8.990163 AAGTTATCCAAAGAAGAACAACCTAA 57.010 30.769 0.00 0.00 0.00 2.69
1554 1848 9.362151 ACCAATAAGTTATCCAAAGAAGAACAA 57.638 29.630 0.00 0.00 0.00 2.83
1555 1849 8.934023 ACCAATAAGTTATCCAAAGAAGAACA 57.066 30.769 0.00 0.00 0.00 3.18
1558 1852 9.053472 TCCTACCAATAAGTTATCCAAAGAAGA 57.947 33.333 0.00 0.00 0.00 2.87
1563 1857 7.127339 AGCTCTCCTACCAATAAGTTATCCAAA 59.873 37.037 0.00 0.00 0.00 3.28
1592 1886 6.071165 AGCAAGAAATAAGAATCCCAACCTTG 60.071 38.462 0.00 0.00 0.00 3.61
1598 1892 6.484288 TCAGAAGCAAGAAATAAGAATCCCA 58.516 36.000 0.00 0.00 0.00 4.37
1612 1907 3.603532 TGCTCCTACATTCAGAAGCAAG 58.396 45.455 0.00 0.00 0.00 4.01
1682 1977 7.435547 GGAATTAGATCCTCCTGCTTCAGCA 62.436 48.000 0.64 0.64 41.65 4.41
1683 1978 3.767902 ATTAGATCCTCCTGCTTCAGC 57.232 47.619 0.00 0.00 42.50 4.26
1789 2084 8.504005 CAAAGGAATTTACTACTGTTCATTCGT 58.496 33.333 0.00 0.00 30.37 3.85
1790 2085 8.717821 TCAAAGGAATTTACTACTGTTCATTCG 58.282 33.333 0.00 0.00 30.37 3.34
1793 2088 9.520515 ACATCAAAGGAATTTACTACTGTTCAT 57.479 29.630 0.00 0.00 0.00 2.57
1863 2158 1.277557 GACACTGGAACTCTCCTGCAT 59.722 52.381 0.00 0.00 42.93 3.96
1903 2198 5.200454 GCAACTATATGCGTGAATTCTGTG 58.800 41.667 7.05 0.00 36.45 3.66
1939 2234 3.522553 CTCATAACAGAAGACGTTCCCC 58.477 50.000 0.00 0.00 32.48 4.81
2025 2415 6.921857 GCACAAAGCAATAATCAATCAGCTAT 59.078 34.615 0.00 0.00 44.79 2.97
2050 2440 1.698532 AGCTCCTGGATTGCCTATGAG 59.301 52.381 0.00 0.00 34.31 2.90
2119 2509 3.734463 TGTTATCAAGTCCTTTCGTGCA 58.266 40.909 0.00 0.00 0.00 4.57
2554 2944 2.568623 TTTGAGCTTTCTGTCCTCCC 57.431 50.000 0.00 0.00 0.00 4.30
2958 3348 5.542779 TCAAATTCATTTTTGGTAACGGGG 58.457 37.500 0.00 0.00 37.23 5.73
3218 3608 0.249398 AATTCCGAACGGAGGGAGTG 59.751 55.000 15.34 0.00 46.06 3.51
3219 3609 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
3220 3610 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3221 3611 1.753073 GAGTAATTCCGAACGGAGGGA 59.247 52.381 15.34 2.49 46.06 4.20
3222 3612 1.535437 CGAGTAATTCCGAACGGAGGG 60.535 57.143 15.34 0.00 46.06 4.30
3223 3613 1.133790 ACGAGTAATTCCGAACGGAGG 59.866 52.381 15.34 4.28 46.06 4.30
3224 3614 2.448219 GACGAGTAATTCCGAACGGAG 58.552 52.381 15.34 5.60 46.06 4.63
3225 3615 1.133025 GGACGAGTAATTCCGAACGGA 59.867 52.381 12.04 12.04 43.52 4.69
3226 3616 1.135315 TGGACGAGTAATTCCGAACGG 60.135 52.381 6.94 6.94 0.00 4.44
3227 3617 2.267188 TGGACGAGTAATTCCGAACG 57.733 50.000 0.00 0.00 0.00 3.95
3228 3618 3.841643 TCTTGGACGAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
3229 3619 4.524316 TTCTTGGACGAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
3230 3620 4.524316 TTTCTTGGACGAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
3231 3621 5.796350 AATTTCTTGGACGAGTAATTCCG 57.204 39.130 0.00 0.00 0.00 4.30
3232 3622 8.209917 ACATAATTTCTTGGACGAGTAATTCC 57.790 34.615 7.24 0.00 31.70 3.01
3235 3625 9.832445 ACATACATAATTTCTTGGACGAGTAAT 57.168 29.630 0.00 0.00 0.00 1.89
3238 3628 9.832445 AATACATACATAATTTCTTGGACGAGT 57.168 29.630 0.00 0.00 0.00 4.18
3266 3656 9.952030 TCACAAAAATGGATGTATCTACAACTA 57.048 29.630 0.00 0.00 39.99 2.24
3267 3657 8.730680 GTCACAAAAATGGATGTATCTACAACT 58.269 33.333 0.00 0.00 39.99 3.16
3268 3658 8.511321 TGTCACAAAAATGGATGTATCTACAAC 58.489 33.333 0.00 0.00 39.99 3.32
3269 3659 8.628630 TGTCACAAAAATGGATGTATCTACAA 57.371 30.769 0.00 0.00 39.99 2.41
3270 3660 8.628630 TTGTCACAAAAATGGATGTATCTACA 57.371 30.769 0.00 0.00 40.98 2.74
3271 3661 8.730680 ACTTGTCACAAAAATGGATGTATCTAC 58.269 33.333 0.00 0.00 0.00 2.59
3272 3662 8.862325 ACTTGTCACAAAAATGGATGTATCTA 57.138 30.769 0.00 0.00 0.00 1.98
3273 3663 7.765695 ACTTGTCACAAAAATGGATGTATCT 57.234 32.000 0.00 0.00 0.00 1.98
3276 3666 9.906660 GAATTACTTGTCACAAAAATGGATGTA 57.093 29.630 0.00 0.00 0.00 2.29
3277 3667 7.872483 GGAATTACTTGTCACAAAAATGGATGT 59.128 33.333 0.00 0.00 0.00 3.06
3278 3668 7.062138 CGGAATTACTTGTCACAAAAATGGATG 59.938 37.037 0.00 0.00 0.00 3.51
3279 3669 7.040062 TCGGAATTACTTGTCACAAAAATGGAT 60.040 33.333 0.00 0.00 0.00 3.41
3280 3670 6.263392 TCGGAATTACTTGTCACAAAAATGGA 59.737 34.615 0.00 0.00 0.00 3.41
3281 3671 6.442952 TCGGAATTACTTGTCACAAAAATGG 58.557 36.000 0.00 0.00 0.00 3.16
3282 3672 7.357206 CGTTCGGAATTACTTGTCACAAAAATG 60.357 37.037 0.00 0.00 0.00 2.32
3283 3673 6.635239 CGTTCGGAATTACTTGTCACAAAAAT 59.365 34.615 0.00 0.00 0.00 1.82
3284 3674 5.966503 CGTTCGGAATTACTTGTCACAAAAA 59.033 36.000 0.00 0.00 0.00 1.94
3285 3675 5.503498 CGTTCGGAATTACTTGTCACAAAA 58.497 37.500 0.00 0.00 0.00 2.44
3286 3676 4.024725 CCGTTCGGAATTACTTGTCACAAA 60.025 41.667 5.19 0.00 0.00 2.83
3287 3677 3.495377 CCGTTCGGAATTACTTGTCACAA 59.505 43.478 5.19 0.00 0.00 3.33
3288 3678 3.061322 CCGTTCGGAATTACTTGTCACA 58.939 45.455 5.19 0.00 0.00 3.58
3289 3679 3.319755 TCCGTTCGGAATTACTTGTCAC 58.680 45.455 11.66 0.00 0.00 3.67
3290 3680 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
3291 3681 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3292 3682 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3293 3683 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3294 3684 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3295 3685 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3296 3686 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3297 3687 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3298 3688 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
3299 3689 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
3300 3690 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
3301 3691 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
3302 3692 0.102481 CATGTACTCCCTCCGTTCGG 59.898 60.000 4.74 4.74 0.00 4.30
3303 3693 1.100510 TCATGTACTCCCTCCGTTCG 58.899 55.000 0.00 0.00 0.00 3.95
3304 3694 3.821421 AATCATGTACTCCCTCCGTTC 57.179 47.619 0.00 0.00 0.00 3.95
3305 3695 4.040461 CCATAATCATGTACTCCCTCCGTT 59.960 45.833 0.00 0.00 0.00 4.44
3306 3696 3.578716 CCATAATCATGTACTCCCTCCGT 59.421 47.826 0.00 0.00 0.00 4.69
3307 3697 3.617531 GCCATAATCATGTACTCCCTCCG 60.618 52.174 0.00 0.00 0.00 4.63
3308 3698 3.584848 AGCCATAATCATGTACTCCCTCC 59.415 47.826 0.00 0.00 0.00 4.30
3309 3699 4.899352 AGCCATAATCATGTACTCCCTC 57.101 45.455 0.00 0.00 0.00 4.30
3310 3700 9.904732 ATATATAGCCATAATCATGTACTCCCT 57.095 33.333 0.00 0.00 0.00 4.20
3527 3921 1.156736 AGATGAAAAACTGCGACCCG 58.843 50.000 0.00 0.00 0.00 5.28
3739 4133 5.798125 TGTGGCCACAAAATCTTATTTGA 57.202 34.783 36.10 7.45 41.73 2.69
3798 4305 5.235305 ACACAGTGCTTAAAAGACAAGTG 57.765 39.130 0.00 6.65 32.91 3.16
3802 4309 5.888691 TGAAACACAGTGCTTAAAAGACA 57.111 34.783 0.00 0.00 0.00 3.41
3844 4353 8.270080 TGTTTCTATGCCGAAAACAATACATA 57.730 30.769 0.00 0.00 34.93 2.29
3854 4363 4.574892 TGTCAGATGTTTCTATGCCGAAA 58.425 39.130 0.00 0.00 0.00 3.46
3865 4374 6.248433 ACCAGAAATACCATGTCAGATGTTT 58.752 36.000 0.00 0.00 0.00 2.83
3866 4375 5.819991 ACCAGAAATACCATGTCAGATGTT 58.180 37.500 0.00 0.00 0.00 2.71
3867 4376 5.441718 ACCAGAAATACCATGTCAGATGT 57.558 39.130 0.00 0.00 0.00 3.06
3868 4377 6.764308 AAACCAGAAATACCATGTCAGATG 57.236 37.500 0.00 0.00 0.00 2.90
3869 4378 7.781324 AAAAACCAGAAATACCATGTCAGAT 57.219 32.000 0.00 0.00 0.00 2.90
3871 4380 8.576442 AGTTAAAAACCAGAAATACCATGTCAG 58.424 33.333 0.00 0.00 0.00 3.51
3873 4382 9.758651 AAAGTTAAAAACCAGAAATACCATGTC 57.241 29.630 0.00 0.00 0.00 3.06
3884 4413 7.835181 TCCTCCTGTTAAAAGTTAAAAACCAGA 59.165 33.333 0.00 0.00 0.00 3.86
4024 4555 7.025963 GGAATCTAACTGAAACAAGATGCAAG 58.974 38.462 0.00 0.00 0.00 4.01
4347 4889 6.756542 GCTCAAATGTTACAAAGTTTCAACCT 59.243 34.615 0.00 0.00 0.00 3.50
4375 4917 3.076621 CACTATCATAACATGGGCGCAT 58.923 45.455 11.00 11.00 0.00 4.73
4391 4933 6.701841 CGCATTCTGGACAGTTAATACACTAT 59.298 38.462 0.00 0.00 0.00 2.12
4422 4964 2.030540 TGAAAAATCTGCTGTGAGCTGC 60.031 45.455 0.00 0.00 42.97 5.25
4432 4974 6.205101 AGATGTGGATTCTGAAAAATCTGC 57.795 37.500 0.00 0.00 36.19 4.26
4458 5001 0.588252 ACTGAGCATGCGTGTTTGAC 59.412 50.000 13.01 0.00 0.00 3.18
4481 5024 8.877864 AATAGACCATTGGAAACATTTACTCA 57.122 30.769 10.37 0.00 42.32 3.41
4509 5052 9.730420 GACAGTTGTGTTTCACTTAATGTTAAT 57.270 29.630 1.72 0.00 36.88 1.40
4510 5053 8.952278 AGACAGTTGTGTTTCACTTAATGTTAA 58.048 29.630 1.72 0.00 36.88 2.01
4511 5054 8.394877 CAGACAGTTGTGTTTCACTTAATGTTA 58.605 33.333 1.72 0.00 36.88 2.41
4513 5056 6.183360 CCAGACAGTTGTGTTTCACTTAATGT 60.183 38.462 1.72 5.29 36.88 2.71
4514 5057 6.038161 TCCAGACAGTTGTGTTTCACTTAATG 59.962 38.462 1.72 2.61 36.88 1.90
4524 5090 2.092968 TCTTGCTCCAGACAGTTGTGTT 60.093 45.455 0.00 0.00 36.88 3.32
4616 5182 9.751542 TGACTTTCTACTAGCATAATTCTTAGC 57.248 33.333 0.00 0.00 0.00 3.09
4654 5220 7.716998 ACTCATTCGCCTTTCTATTAACATCAT 59.283 33.333 0.00 0.00 0.00 2.45
4673 5239 0.741221 GTCCCGTGCCTCACTCATTC 60.741 60.000 0.00 0.00 31.34 2.67
4800 5387 7.455638 AGTTACTCTATGTGGTAAGGTTGGTAA 59.544 37.037 0.00 0.00 0.00 2.85
4825 5412 4.101585 TCCCAACATGCCTGAGTATCTAAG 59.898 45.833 0.00 0.00 34.92 2.18
4848 5435 2.169352 CTGTGCAGTGCTCTAGGGTTAT 59.831 50.000 17.60 0.00 0.00 1.89
4856 5443 3.448660 TGTACATATCTGTGCAGTGCTCT 59.551 43.478 17.60 0.00 42.17 4.09
4992 5580 5.355071 GTGAACATGTTCTGCAAGATGGATA 59.645 40.000 32.57 10.54 46.36 2.59
5018 5624 1.102978 GTGGCTGTGTGTTCACCTTT 58.897 50.000 0.37 0.00 43.26 3.11
5019 5625 0.751643 GGTGGCTGTGTGTTCACCTT 60.752 55.000 0.00 0.00 44.43 3.50
5078 5684 2.190161 TCAAATGGTCGATTCTACGCG 58.810 47.619 3.53 3.53 0.00 6.01
5125 5731 4.802999 CTTTTTGAGCCAGACAGGATTTC 58.197 43.478 0.00 0.00 41.22 2.17
5193 5799 5.144359 AGCGTGCGTAGTTTTCAATAAAAG 58.856 37.500 0.00 0.00 35.29 2.27
5201 5807 1.721804 GCTCAAGCGTGCGTAGTTTTC 60.722 52.381 0.00 0.00 0.00 2.29
5203 5809 0.878523 TGCTCAAGCGTGCGTAGTTT 60.879 50.000 0.00 0.00 45.83 2.66
5315 5921 3.424105 GGGCCAGAGCAAGGGGAT 61.424 66.667 4.39 0.00 42.56 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.