Multiple sequence alignment - TraesCS4D01G259500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G259500 chr4D 100.000 5218 0 0 1 5218 428944818 428939601 0.000000e+00 9636.0
1 TraesCS4D01G259500 chr4D 76.565 1182 227 41 2990 4143 428717278 428718437 2.080000e-168 603.0
2 TraesCS4D01G259500 chr4D 89.565 230 21 1 2503 2732 428716713 428716939 6.610000e-74 289.0
3 TraesCS4D01G259500 chr4D 74.455 321 64 13 3754 4061 386995190 386994875 7.100000e-24 122.0
4 TraesCS4D01G259500 chr4B 96.386 1909 47 12 2462 4361 526274266 526276161 0.000000e+00 3123.0
5 TraesCS4D01G259500 chr4B 86.226 1786 113 48 1 1749 526272210 526273899 0.000000e+00 1812.0
6 TraesCS4D01G259500 chr4B 76.351 1184 232 38 2990 4146 526737139 526735977 4.500000e-165 592.0
7 TraesCS4D01G259500 chr4B 89.717 389 20 12 1970 2351 526273892 526274267 3.660000e-131 479.0
8 TraesCS4D01G259500 chr4B 95.312 256 10 2 1747 2002 626017330 626017077 6.290000e-109 405.0
9 TraesCS4D01G259500 chr4B 89.130 230 22 1 2503 2732 526737712 526737486 3.080000e-72 283.0
10 TraesCS4D01G259500 chr4B 92.632 95 7 0 2350 2444 597139206 597139112 2.530000e-28 137.0
11 TraesCS4D01G259500 chr4B 74.766 321 63 14 3754 4061 475193363 475193048 1.530000e-25 128.0
12 TraesCS4D01G259500 chr4A 95.105 1900 65 19 2471 4361 37316978 37318858 0.000000e+00 2968.0
13 TraesCS4D01G259500 chr4A 88.588 850 66 16 890 1723 37315724 37316558 0.000000e+00 1003.0
14 TraesCS4D01G259500 chr4A 75.845 1184 238 39 2990 4146 37785251 37784089 4.560000e-155 558.0
15 TraesCS4D01G259500 chr4A 89.744 390 25 9 1974 2348 37316571 37316960 7.860000e-133 484.0
16 TraesCS4D01G259500 chr4A 82.868 537 30 22 337 867 37315253 37315733 4.830000e-115 425.0
17 TraesCS4D01G259500 chr4A 99.556 225 1 0 1747 1971 706604202 706603978 1.350000e-110 411.0
18 TraesCS4D01G259500 chr4A 98.268 231 3 1 1744 1974 584460091 584459862 2.260000e-108 403.0
19 TraesCS4D01G259500 chr4A 96.651 209 6 1 7 214 37314935 37315143 3.870000e-91 346.0
20 TraesCS4D01G259500 chr4A 90.000 230 20 1 2503 2732 37785831 37785605 1.420000e-75 294.0
21 TraesCS4D01G259500 chr4A 75.389 321 61 13 3754 4061 68467947 68467632 7.050000e-29 139.0
22 TraesCS4D01G259500 chr4A 90.361 83 6 2 262 342 37315138 37315220 1.990000e-19 108.0
23 TraesCS4D01G259500 chr1D 97.396 845 20 2 4375 5218 229967002 229966159 0.000000e+00 1437.0
24 TraesCS4D01G259500 chr1D 73.665 824 182 28 3199 4003 100662090 100662897 2.380000e-73 287.0
25 TraesCS4D01G259500 chr1D 92.079 101 8 0 2341 2441 463215738 463215838 5.450000e-30 143.0
26 TraesCS4D01G259500 chr6D 92.335 848 61 2 4375 5218 3439963 3440810 0.000000e+00 1203.0
27 TraesCS4D01G259500 chr7B 97.917 240 5 0 1731 1970 23409434 23409673 2.910000e-112 416.0
28 TraesCS4D01G259500 chr7B 99.115 226 2 0 1741 1966 319857395 319857620 1.750000e-109 407.0
29 TraesCS4D01G259500 chr5A 99.123 228 1 1 1747 1974 328805291 328805517 4.860000e-110 409.0
30 TraesCS4D01G259500 chr5A 72.042 862 206 31 3211 4056 400418927 400419769 1.890000e-54 224.0
31 TraesCS4D01G259500 chr5A 75.329 304 71 4 3755 4056 400494147 400493846 5.450000e-30 143.0
32 TraesCS4D01G259500 chr3B 99.554 224 1 0 1746 1969 542749391 542749168 4.860000e-110 409.0
33 TraesCS4D01G259500 chr3B 93.684 95 6 0 2350 2444 552359752 552359658 5.450000e-30 143.0
34 TraesCS4D01G259500 chr3A 99.552 223 1 0 1746 1968 623797307 623797085 1.750000e-109 407.0
35 TraesCS4D01G259500 chr3A 95.789 95 4 0 2350 2444 355160317 355160223 2.520000e-33 154.0
36 TraesCS4D01G259500 chr6B 98.253 229 3 1 1746 1974 127754118 127754345 2.930000e-107 399.0
37 TraesCS4D01G259500 chr2B 73.266 894 200 30 3184 4056 732568476 732567601 1.840000e-74 291.0
38 TraesCS4D01G259500 chr2B 93.684 95 6 0 2350 2444 622297990 622297896 5.450000e-30 143.0
39 TraesCS4D01G259500 chr2B 82.609 69 10 1 1023 1091 8262847 8262913 5.640000e-05 60.2
40 TraesCS4D01G259500 chr1A 73.179 865 197 28 3211 4056 104921109 104920261 3.980000e-71 279.0
41 TraesCS4D01G259500 chr2D 72.788 893 206 30 3184 4056 602451546 602450671 8.610000e-68 268.0
42 TraesCS4D01G259500 chr2D 71.563 953 226 36 3211 4142 651649004 651649932 3.160000e-52 217.0
43 TraesCS4D01G259500 chr5D 72.705 817 186 33 3211 4010 298719366 298720162 6.750000e-59 239.0
44 TraesCS4D01G259500 chrUn 71.478 866 204 32 3211 4056 23652884 23652042 1.920000e-44 191.0
45 TraesCS4D01G259500 chr7D 92.632 95 7 0 2350 2444 202864371 202864277 2.530000e-28 137.0
46 TraesCS4D01G259500 chr7A 91.089 101 9 0 2341 2441 265719765 265719865 2.530000e-28 137.0
47 TraesCS4D01G259500 chr3D 90.476 105 9 1 2340 2444 272290567 272290464 2.530000e-28 137.0
48 TraesCS4D01G259500 chr1B 89.815 108 10 1 2341 2448 535299703 535299809 2.530000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G259500 chr4D 428939601 428944818 5217 True 9636.000000 9636 100.000000 1 5218 1 chr4D.!!$R2 5217
1 TraesCS4D01G259500 chr4D 428716713 428718437 1724 False 446.000000 603 83.065000 2503 4143 2 chr4D.!!$F1 1640
2 TraesCS4D01G259500 chr4B 526272210 526276161 3951 False 1804.666667 3123 90.776333 1 4361 3 chr4B.!!$F1 4360
3 TraesCS4D01G259500 chr4B 526735977 526737712 1735 True 437.500000 592 82.740500 2503 4146 2 chr4B.!!$R4 1643
4 TraesCS4D01G259500 chr4A 37314935 37318858 3923 False 889.000000 2968 90.552833 7 4361 6 chr4A.!!$F1 4354
5 TraesCS4D01G259500 chr4A 37784089 37785831 1742 True 426.000000 558 82.922500 2503 4146 2 chr4A.!!$R4 1643
6 TraesCS4D01G259500 chr1D 229966159 229967002 843 True 1437.000000 1437 97.396000 4375 5218 1 chr1D.!!$R1 843
7 TraesCS4D01G259500 chr1D 100662090 100662897 807 False 287.000000 287 73.665000 3199 4003 1 chr1D.!!$F1 804
8 TraesCS4D01G259500 chr6D 3439963 3440810 847 False 1203.000000 1203 92.335000 4375 5218 1 chr6D.!!$F1 843
9 TraesCS4D01G259500 chr5A 400418927 400419769 842 False 224.000000 224 72.042000 3211 4056 1 chr5A.!!$F2 845
10 TraesCS4D01G259500 chr2B 732567601 732568476 875 True 291.000000 291 73.266000 3184 4056 1 chr2B.!!$R2 872
11 TraesCS4D01G259500 chr1A 104920261 104921109 848 True 279.000000 279 73.179000 3211 4056 1 chr1A.!!$R1 845
12 TraesCS4D01G259500 chr2D 602450671 602451546 875 True 268.000000 268 72.788000 3184 4056 1 chr2D.!!$R1 872
13 TraesCS4D01G259500 chr2D 651649004 651649932 928 False 217.000000 217 71.563000 3211 4142 1 chr2D.!!$F1 931
14 TraesCS4D01G259500 chr5D 298719366 298720162 796 False 239.000000 239 72.705000 3211 4010 1 chr5D.!!$F1 799

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
343 385 0.038251 CAAGCCGCACACAGAGAGTA 60.038 55.0 0.00 0.0 0.00 2.59 F
1437 1543 0.242555 CGCAACGGGGTTAATTTGCT 59.757 50.0 3.88 0.0 41.80 3.91 F
1762 1873 0.178981 TTATACTCCCTCCGTCCGGG 60.179 60.0 0.00 0.0 43.38 5.73 F
1770 1881 0.672342 CCTCCGTCCGGGTGTATAAG 59.328 60.0 0.00 0.0 37.00 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1751 1862 0.672342 CTTATACACCCGGACGGAGG 59.328 60.000 13.13 6.21 37.50 4.30 R
2301 2426 1.063070 TGGTTTGAGCCCAGTACCCA 61.063 55.000 0.00 0.00 31.59 4.51 R
2985 3226 1.792632 CGTCGCGTTGCTCTGTATGTA 60.793 52.381 5.77 0.00 0.00 2.29 R
4256 4512 2.763448 ACTACTCTGATGCTCTGGAACC 59.237 50.000 0.00 0.00 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
211 212 2.869646 CGTCAATGCACGGCACAT 59.130 55.556 0.50 0.00 43.04 3.21
225 226 2.048222 ACATCACACACGCCCGAG 60.048 61.111 0.00 0.00 0.00 4.63
226 227 2.261361 CATCACACACGCCCGAGA 59.739 61.111 0.00 0.00 0.00 4.04
227 228 1.807165 CATCACACACGCCCGAGAG 60.807 63.158 0.00 0.00 0.00 3.20
234 236 3.842923 ACGCCCGAGAGAGCCATG 61.843 66.667 0.00 0.00 0.00 3.66
235 237 3.842923 CGCCCGAGAGAGCCATGT 61.843 66.667 0.00 0.00 0.00 3.21
241 243 1.039068 CGAGAGAGCCATGTCCATCT 58.961 55.000 0.00 0.00 0.00 2.90
242 244 1.000385 CGAGAGAGCCATGTCCATCTC 60.000 57.143 0.00 0.00 38.77 2.75
251 253 3.801698 CCATGTCCATCTCTTCGTGAAT 58.198 45.455 0.00 0.00 0.00 2.57
252 254 4.194640 CCATGTCCATCTCTTCGTGAATT 58.805 43.478 0.00 0.00 0.00 2.17
253 255 4.637534 CCATGTCCATCTCTTCGTGAATTT 59.362 41.667 0.00 0.00 0.00 1.82
254 256 5.817296 CCATGTCCATCTCTTCGTGAATTTA 59.183 40.000 0.00 0.00 0.00 1.40
255 257 6.484643 CCATGTCCATCTCTTCGTGAATTTAT 59.515 38.462 0.00 0.00 0.00 1.40
257 259 5.748630 TGTCCATCTCTTCGTGAATTTATCG 59.251 40.000 0.00 0.00 0.00 2.92
258 260 4.745125 TCCATCTCTTCGTGAATTTATCGC 59.255 41.667 0.00 0.00 35.12 4.58
259 261 4.084328 CCATCTCTTCGTGAATTTATCGCC 60.084 45.833 0.00 0.00 34.99 5.54
260 262 3.454375 TCTCTTCGTGAATTTATCGCCC 58.546 45.455 0.00 0.00 34.99 6.13
263 265 2.404923 TCGTGAATTTATCGCCCCAA 57.595 45.000 0.00 0.00 34.99 4.12
279 281 3.571401 GCCCCAATCAGTTCATCAATAGG 59.429 47.826 0.00 0.00 0.00 2.57
287 289 2.507058 AGTTCATCAATAGGAGCAGCCA 59.493 45.455 0.00 0.00 40.02 4.75
330 332 0.676466 TGAATGCCACTACCAAGCCG 60.676 55.000 0.00 0.00 0.00 5.52
343 385 0.038251 CAAGCCGCACACAGAGAGTA 60.038 55.000 0.00 0.00 0.00 2.59
751 828 1.888436 GAGCGTGGACTGGACCATCA 61.888 60.000 0.00 0.00 42.17 3.07
767 844 4.036518 ACCATCATCTACCTCTTCTGCTT 58.963 43.478 0.00 0.00 0.00 3.91
768 845 4.100808 ACCATCATCTACCTCTTCTGCTTC 59.899 45.833 0.00 0.00 0.00 3.86
769 846 4.344679 CCATCATCTACCTCTTCTGCTTCT 59.655 45.833 0.00 0.00 0.00 2.85
770 847 5.509501 CCATCATCTACCTCTTCTGCTTCTC 60.510 48.000 0.00 0.00 0.00 2.87
771 848 4.865905 TCATCTACCTCTTCTGCTTCTCT 58.134 43.478 0.00 0.00 0.00 3.10
772 849 5.268387 TCATCTACCTCTTCTGCTTCTCTT 58.732 41.667 0.00 0.00 0.00 2.85
773 850 5.359576 TCATCTACCTCTTCTGCTTCTCTTC 59.640 44.000 0.00 0.00 0.00 2.87
774 851 4.929479 TCTACCTCTTCTGCTTCTCTTCT 58.071 43.478 0.00 0.00 0.00 2.85
775 852 3.959535 ACCTCTTCTGCTTCTCTTCTG 57.040 47.619 0.00 0.00 0.00 3.02
789 866 3.513515 TCTCTTCTGCTTCTTCTTCCTCC 59.486 47.826 0.00 0.00 0.00 4.30
826 903 2.251600 GCAAGTGCCTTGGTCTCTG 58.748 57.895 14.32 0.00 41.31 3.35
831 908 1.842920 TGCCTTGGTCTCTGCAGGA 60.843 57.895 15.13 7.36 0.00 3.86
858 935 7.482169 TGGGTAAACCATCTATCTATAGCTG 57.518 40.000 0.00 0.00 46.80 4.24
869 946 3.229697 TCTATAGCTGCTACTGCCTGA 57.770 47.619 12.26 1.85 38.71 3.86
880 957 2.355010 ACTGCCTGAGCTCTGTTTTT 57.645 45.000 16.19 0.00 40.80 1.94
898 975 2.475339 TTATGGGGATTGCCATTGCT 57.525 45.000 0.00 0.00 38.71 3.91
902 979 0.396139 GGGGATTGCCATTGCTCTGA 60.396 55.000 0.00 0.00 38.71 3.27
986 1063 2.338984 GAACTGCTGACCGACGGT 59.661 61.111 21.93 21.93 39.44 4.83
989 1066 2.023414 AACTGCTGACCGACGGTGAA 62.023 55.000 27.26 11.68 35.25 3.18
991 1068 3.112709 GCTGACCGACGGTGAAGC 61.113 66.667 27.26 26.93 35.25 3.86
994 1071 2.432628 GACCGACGGTGAAGCCTG 60.433 66.667 27.26 0.00 35.25 4.85
995 1072 3.934391 GACCGACGGTGAAGCCTGG 62.934 68.421 27.26 0.00 35.25 4.45
996 1073 4.003788 CCGACGGTGAAGCCTGGT 62.004 66.667 5.48 0.00 34.25 4.00
1003 1080 0.535335 GGTGAAGCCTGGTACGATGA 59.465 55.000 0.00 0.00 0.00 2.92
1051 1128 2.286872 CTGCTGCTCTAATGGAAGGTG 58.713 52.381 0.00 0.00 0.00 4.00
1059 1136 1.745087 CTAATGGAAGGTGCGCAATGT 59.255 47.619 14.00 0.00 0.00 2.71
1067 1144 4.713980 TGCGCAATGTGCATATGC 57.286 50.000 21.09 21.09 44.36 3.14
1070 1147 0.850217 GCGCAATGTGCATATGCTTG 59.150 50.000 27.13 22.51 45.36 4.01
1079 1156 3.697542 TGTGCATATGCTTGAATCTGCTT 59.302 39.130 27.13 0.00 42.66 3.91
1091 1168 5.551760 TGAATCTGCTTTACTTTGCTAGC 57.448 39.130 8.10 8.10 0.00 3.42
1097 1174 6.931838 TCTGCTTTACTTTGCTAGCTAGTAA 58.068 36.000 25.77 25.77 33.75 2.24
1099 1176 6.698380 TGCTTTACTTTGCTAGCTAGTAACT 58.302 36.000 27.72 13.31 34.93 2.24
1109 1186 3.821421 AGCTAGTAACTACCACCATGC 57.179 47.619 0.00 0.00 0.00 4.06
1134 1223 7.821846 GCATCCTTAAACCAATGAACCAATTAA 59.178 33.333 0.00 0.00 0.00 1.40
1135 1224 9.717942 CATCCTTAAACCAATGAACCAATTAAA 57.282 29.630 0.00 0.00 0.00 1.52
1145 1234 9.593134 CCAATGAACCAATTAAAAATCGGATAA 57.407 29.630 0.00 0.00 0.00 1.75
1163 1252 7.561251 TCGGATAACTACATTCCATGAGAAAA 58.439 34.615 0.00 0.00 38.21 2.29
1164 1253 8.210946 TCGGATAACTACATTCCATGAGAAAAT 58.789 33.333 0.00 0.00 38.21 1.82
1165 1254 8.499162 CGGATAACTACATTCCATGAGAAAATC 58.501 37.037 0.00 0.00 38.21 2.17
1166 1255 8.787852 GGATAACTACATTCCATGAGAAAATCC 58.212 37.037 0.00 0.00 38.21 3.01
1168 1257 9.927081 ATAACTACATTCCATGAGAAAATCCTT 57.073 29.630 0.00 0.00 38.21 3.36
1185 1277 7.648039 AAATCCTTGTGGTTTAGTTGTAACA 57.352 32.000 0.00 0.00 34.23 2.41
1249 1341 2.681848 GTCTCTCCCGTACGATTCTTCA 59.318 50.000 18.76 0.00 0.00 3.02
1272 1364 2.456119 GCGTCGAGGCAAGTCCATG 61.456 63.158 24.22 0.00 37.29 3.66
1286 1391 2.249535 CCATGCGCCCATTCTCTCG 61.250 63.158 4.18 0.00 0.00 4.04
1292 1397 0.744874 CGCCCATTCTCTCGTAGGAA 59.255 55.000 0.00 0.00 0.00 3.36
1305 1411 6.204301 TCTCTCGTAGGAATATTACTCAACCG 59.796 42.308 2.60 3.33 0.00 4.44
1311 1417 5.045872 AGGAATATTACTCAACCGTTACGC 58.954 41.667 0.00 0.00 0.00 4.42
1313 1419 2.014335 ATTACTCAACCGTTACGCCC 57.986 50.000 0.00 0.00 0.00 6.13
1333 1439 3.307410 CCCGCAATAGCATAGATAACCCA 60.307 47.826 0.00 0.00 42.27 4.51
1437 1543 0.242555 CGCAACGGGGTTAATTTGCT 59.757 50.000 3.88 0.00 41.80 3.91
1655 1761 2.630580 AGTCTGAAACTGGTCTGGACTC 59.369 50.000 0.67 0.00 36.65 3.36
1660 1766 1.343069 AACTGGTCTGGACTCTGGAC 58.657 55.000 0.67 0.00 0.00 4.02
1661 1767 0.485099 ACTGGTCTGGACTCTGGACT 59.515 55.000 0.67 0.00 0.00 3.85
1662 1768 1.711375 ACTGGTCTGGACTCTGGACTA 59.289 52.381 0.67 0.00 0.00 2.59
1663 1769 2.313342 ACTGGTCTGGACTCTGGACTAT 59.687 50.000 0.67 0.00 0.00 2.12
1664 1770 2.692557 CTGGTCTGGACTCTGGACTATG 59.307 54.545 0.67 0.00 0.00 2.23
1665 1771 2.035632 GGTCTGGACTCTGGACTATGG 58.964 57.143 0.67 0.00 0.00 2.74
1666 1772 2.358300 GGTCTGGACTCTGGACTATGGA 60.358 54.545 0.67 0.00 0.00 3.41
1667 1773 3.366396 GTCTGGACTCTGGACTATGGAA 58.634 50.000 0.00 0.00 0.00 3.53
1749 1860 8.851145 CCAGCCGTAGTGATGATATATTATACT 58.149 37.037 0.00 0.00 0.00 2.12
1750 1861 9.885934 CAGCCGTAGTGATGATATATTATACTC 57.114 37.037 0.00 0.00 0.00 2.59
1751 1862 9.069082 AGCCGTAGTGATGATATATTATACTCC 57.931 37.037 0.00 0.00 0.00 3.85
1752 1863 8.298140 GCCGTAGTGATGATATATTATACTCCC 58.702 40.741 0.00 0.00 0.00 4.30
1753 1864 9.575868 CCGTAGTGATGATATATTATACTCCCT 57.424 37.037 0.00 0.00 0.00 4.20
1756 1867 8.698973 AGTGATGATATATTATACTCCCTCCG 57.301 38.462 0.00 0.00 0.00 4.63
1757 1868 8.282982 AGTGATGATATATTATACTCCCTCCGT 58.717 37.037 0.00 0.00 0.00 4.69
1758 1869 8.569641 GTGATGATATATTATACTCCCTCCGTC 58.430 40.741 0.00 0.00 0.00 4.79
1759 1870 7.724506 TGATGATATATTATACTCCCTCCGTCC 59.275 40.741 0.00 0.00 0.00 4.79
1760 1871 6.060136 TGATATATTATACTCCCTCCGTCCG 58.940 44.000 0.00 0.00 0.00 4.79
1761 1872 1.920610 ATTATACTCCCTCCGTCCGG 58.079 55.000 0.00 0.00 0.00 5.14
1762 1873 0.178981 TTATACTCCCTCCGTCCGGG 60.179 60.000 0.00 0.00 43.38 5.73
1763 1874 1.355718 TATACTCCCTCCGTCCGGGT 61.356 60.000 0.00 0.00 42.56 5.28
1764 1875 2.923634 ATACTCCCTCCGTCCGGGTG 62.924 65.000 0.00 0.00 42.56 4.61
1766 1877 3.650298 CTCCCTCCGTCCGGGTGTA 62.650 68.421 0.00 0.00 42.56 2.90
1767 1878 2.443390 CCCTCCGTCCGGGTGTAT 60.443 66.667 0.00 0.00 36.91 2.29
1768 1879 1.152694 CCCTCCGTCCGGGTGTATA 60.153 63.158 0.00 0.00 36.91 1.47
1769 1880 0.756442 CCCTCCGTCCGGGTGTATAA 60.756 60.000 0.00 0.00 36.91 0.98
1770 1881 0.672342 CCTCCGTCCGGGTGTATAAG 59.328 60.000 0.00 0.00 37.00 1.73
1771 1882 1.396653 CTCCGTCCGGGTGTATAAGT 58.603 55.000 0.00 0.00 37.00 2.24
1772 1883 1.336125 CTCCGTCCGGGTGTATAAGTC 59.664 57.143 0.00 0.00 37.00 3.01
1773 1884 1.105457 CCGTCCGGGTGTATAAGTCA 58.895 55.000 0.00 0.00 0.00 3.41
1774 1885 1.684983 CCGTCCGGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 0.00 3.06
1775 1886 2.101917 CCGTCCGGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 0.00 2.57
1776 1887 3.378339 CGTCCGGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
1777 1888 3.378339 GTCCGGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
1778 1889 2.132762 CCGGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
1779 1890 1.784856 CGGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
1780 1891 2.797087 CGGGTGTATAAGTCATTCGCGT 60.797 50.000 5.77 0.00 0.00 6.01
1781 1892 3.548616 CGGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
1782 1893 3.979495 GGGTGTATAAGTCATTCGCGTAG 59.021 47.826 5.77 0.00 0.00 3.51
1783 1894 4.498682 GGGTGTATAAGTCATTCGCGTAGT 60.499 45.833 5.77 0.00 0.00 2.73
1784 1895 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
1785 1896 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
1786 1897 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
1787 1898 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
1788 1899 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
1789 1900 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
1790 1901 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
1791 1902 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
1792 1903 3.011818 TCATTCGCGTAGTTCTAGGTCA 58.988 45.455 5.77 0.00 0.00 4.02
1793 1904 3.630769 TCATTCGCGTAGTTCTAGGTCAT 59.369 43.478 5.77 0.00 0.00 3.06
1794 1905 3.687572 TTCGCGTAGTTCTAGGTCATC 57.312 47.619 5.77 0.00 0.00 2.92
1795 1906 1.596260 TCGCGTAGTTCTAGGTCATCG 59.404 52.381 5.77 0.00 0.00 3.84
1796 1907 1.596260 CGCGTAGTTCTAGGTCATCGA 59.404 52.381 0.00 0.00 0.00 3.59
1797 1908 2.223611 CGCGTAGTTCTAGGTCATCGAT 59.776 50.000 0.00 0.00 0.00 3.59
1798 1909 3.303857 CGCGTAGTTCTAGGTCATCGATT 60.304 47.826 0.00 0.00 0.00 3.34
1799 1910 4.608951 GCGTAGTTCTAGGTCATCGATTT 58.391 43.478 0.00 0.00 0.00 2.17
1800 1911 4.441415 GCGTAGTTCTAGGTCATCGATTTG 59.559 45.833 0.00 0.00 0.00 2.32
1801 1912 5.732528 GCGTAGTTCTAGGTCATCGATTTGA 60.733 44.000 0.00 0.00 0.00 2.69
1802 1913 5.910166 CGTAGTTCTAGGTCATCGATTTGAG 59.090 44.000 0.00 0.00 0.00 3.02
1803 1914 5.269505 AGTTCTAGGTCATCGATTTGAGG 57.730 43.478 0.00 0.00 0.00 3.86
1804 1915 4.956700 AGTTCTAGGTCATCGATTTGAGGA 59.043 41.667 0.00 0.00 34.44 3.71
1805 1916 5.422331 AGTTCTAGGTCATCGATTTGAGGAA 59.578 40.000 0.00 0.00 39.46 3.36
1806 1917 6.098982 AGTTCTAGGTCATCGATTTGAGGAAT 59.901 38.462 0.00 0.00 39.46 3.01
1807 1918 6.485830 TCTAGGTCATCGATTTGAGGAATT 57.514 37.500 0.00 0.00 39.46 2.17
1808 1919 7.597288 TCTAGGTCATCGATTTGAGGAATTA 57.403 36.000 0.00 0.00 39.46 1.40
1809 1920 8.018537 TCTAGGTCATCGATTTGAGGAATTAA 57.981 34.615 0.00 0.00 39.46 1.40
1810 1921 8.482943 TCTAGGTCATCGATTTGAGGAATTAAA 58.517 33.333 0.00 0.00 39.46 1.52
1811 1922 9.277783 CTAGGTCATCGATTTGAGGAATTAAAT 57.722 33.333 0.00 0.00 39.46 1.40
1813 1924 9.799106 AGGTCATCGATTTGAGGAATTAAATAT 57.201 29.630 0.00 0.00 39.46 1.28
1814 1925 9.831737 GGTCATCGATTTGAGGAATTAAATATG 57.168 33.333 0.00 0.00 39.46 1.78
1850 1961 9.832445 TCATGAAAAGTATACCACTAGATTTCC 57.168 33.333 0.00 0.00 36.04 3.13
1851 1962 9.613428 CATGAAAAGTATACCACTAGATTTCCA 57.387 33.333 0.00 0.00 36.04 3.53
1852 1963 9.614792 ATGAAAAGTATACCACTAGATTTCCAC 57.385 33.333 0.00 0.00 36.04 4.02
1853 1964 8.598916 TGAAAAGTATACCACTAGATTTCCACA 58.401 33.333 0.00 0.00 36.04 4.17
1854 1965 8.788325 AAAAGTATACCACTAGATTTCCACAC 57.212 34.615 0.00 0.00 36.04 3.82
1855 1966 6.145338 AGTATACCACTAGATTTCCACACG 57.855 41.667 0.00 0.00 34.98 4.49
1856 1967 2.762535 ACCACTAGATTTCCACACGG 57.237 50.000 0.00 0.00 0.00 4.94
1857 1968 2.253610 ACCACTAGATTTCCACACGGA 58.746 47.619 0.00 0.00 40.60 4.69
1858 1969 2.838202 ACCACTAGATTTCCACACGGAT 59.162 45.455 0.00 0.00 42.41 4.18
1859 1970 3.198068 CCACTAGATTTCCACACGGATG 58.802 50.000 0.00 0.00 42.41 3.51
1860 1971 3.369471 CCACTAGATTTCCACACGGATGT 60.369 47.826 0.00 0.00 42.41 3.06
1861 1972 4.142026 CCACTAGATTTCCACACGGATGTA 60.142 45.833 0.00 0.00 42.41 2.29
1862 1973 5.043903 CACTAGATTTCCACACGGATGTAG 58.956 45.833 0.00 0.00 42.41 2.74
1863 1974 4.710375 ACTAGATTTCCACACGGATGTAGT 59.290 41.667 0.00 0.00 42.41 2.73
1864 1975 4.553330 AGATTTCCACACGGATGTAGTT 57.447 40.909 0.00 0.00 42.41 2.24
1865 1976 4.906618 AGATTTCCACACGGATGTAGTTT 58.093 39.130 0.00 0.00 42.41 2.66
1866 1977 4.695455 AGATTTCCACACGGATGTAGTTTG 59.305 41.667 0.00 0.00 42.41 2.93
1867 1978 3.478857 TTCCACACGGATGTAGTTTGT 57.521 42.857 0.00 0.00 42.41 2.83
1868 1979 4.603989 TTCCACACGGATGTAGTTTGTA 57.396 40.909 0.00 0.00 42.41 2.41
1869 1980 4.603989 TCCACACGGATGTAGTTTGTAA 57.396 40.909 0.00 0.00 36.72 2.41
1870 1981 4.958509 TCCACACGGATGTAGTTTGTAAA 58.041 39.130 0.00 0.00 36.72 2.01
1871 1982 5.553123 TCCACACGGATGTAGTTTGTAAAT 58.447 37.500 0.00 0.00 36.72 1.40
1872 1983 6.699366 TCCACACGGATGTAGTTTGTAAATA 58.301 36.000 0.00 0.00 36.72 1.40
1873 1984 7.332557 TCCACACGGATGTAGTTTGTAAATAT 58.667 34.615 0.00 0.00 36.72 1.28
1874 1985 8.476447 TCCACACGGATGTAGTTTGTAAATATA 58.524 33.333 0.00 0.00 36.72 0.86
1875 1986 9.268268 CCACACGGATGTAGTTTGTAAATATAT 57.732 33.333 0.00 0.00 36.72 0.86
1933 2044 7.859875 AGTTAAATTATCGACCTAGAACTACGC 59.140 37.037 0.00 0.00 0.00 4.42
1934 2045 3.867055 TTATCGACCTAGAACTACGCG 57.133 47.619 3.53 3.53 0.00 6.01
1935 2046 1.945387 ATCGACCTAGAACTACGCGA 58.055 50.000 15.93 0.00 0.00 5.87
1936 2047 1.725641 TCGACCTAGAACTACGCGAA 58.274 50.000 15.93 0.00 0.00 4.70
1937 2048 2.283298 TCGACCTAGAACTACGCGAAT 58.717 47.619 15.93 0.00 0.00 3.34
1938 2049 2.031314 TCGACCTAGAACTACGCGAATG 59.969 50.000 15.93 4.47 0.00 2.67
1939 2050 2.031314 CGACCTAGAACTACGCGAATGA 59.969 50.000 15.93 0.00 0.00 2.57
1940 2051 3.361414 GACCTAGAACTACGCGAATGAC 58.639 50.000 15.93 0.66 0.00 3.06
1941 2052 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
1942 2053 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
1943 2054 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
1944 2055 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
1945 2056 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
1946 2057 6.796072 CCTAGAACTACGCGAATGACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
1947 2058 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
1948 2059 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
1949 2060 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
1950 2061 2.456989 ACGCGAATGACTTATACACCG 58.543 47.619 15.93 0.00 0.00 4.94
1951 2062 1.784856 CGCGAATGACTTATACACCGG 59.215 52.381 0.00 0.00 0.00 5.28
1952 2063 2.132762 GCGAATGACTTATACACCGGG 58.867 52.381 6.32 0.00 0.00 5.73
1953 2064 2.223876 GCGAATGACTTATACACCGGGA 60.224 50.000 6.32 0.00 0.00 5.14
1954 2065 3.378339 CGAATGACTTATACACCGGGAC 58.622 50.000 6.32 0.00 0.00 4.46
1971 2082 4.632327 GGGACGGAGGTAGTACTAGTAT 57.368 50.000 5.75 0.00 0.00 2.12
1972 2083 4.979335 GGGACGGAGGTAGTACTAGTATT 58.021 47.826 5.75 4.37 0.00 1.89
1973 2084 5.380900 GGGACGGAGGTAGTACTAGTATTT 58.619 45.833 5.75 0.67 0.00 1.40
1974 2085 6.534634 GGGACGGAGGTAGTACTAGTATTTA 58.465 44.000 5.75 0.00 0.00 1.40
1975 2086 7.171653 GGGACGGAGGTAGTACTAGTATTTAT 58.828 42.308 5.75 0.00 0.00 1.40
1976 2087 8.322091 GGGACGGAGGTAGTACTAGTATTTATA 58.678 40.741 5.75 0.00 0.00 0.98
1977 2088 9.726438 GGACGGAGGTAGTACTAGTATTTATAA 57.274 37.037 5.75 0.00 0.00 0.98
2035 2146 6.697892 CGGAAAGTATCTGAGATTAGTGGTTC 59.302 42.308 0.00 0.00 36.44 3.62
2040 2151 4.436242 TCTGAGATTAGTGGTTCGTGTC 57.564 45.455 0.00 0.00 0.00 3.67
2097 2211 6.210784 AGCAAAGCATATGCATATTCCAAGAT 59.789 34.615 28.62 1.23 46.22 2.40
2108 2222 5.517770 GCATATTCCAAGATGAAAGCAACAC 59.482 40.000 0.00 0.00 29.33 3.32
2220 2341 1.212935 CAGGATCCATTTCCGGGTCTT 59.787 52.381 15.82 0.00 40.94 3.01
2274 2398 1.580639 GCGTCGACGTCTAGACAGC 60.581 63.158 35.48 14.52 42.22 4.40
2305 2430 6.697641 TTTTAGAGATGGTCTAGTTTGGGT 57.302 37.500 0.00 0.00 39.05 4.51
2353 2482 9.840427 AAACAATATGCACAAATTGTACTACTC 57.160 29.630 18.85 0.00 43.66 2.59
2354 2483 7.985476 ACAATATGCACAAATTGTACTACTCC 58.015 34.615 17.67 0.00 42.87 3.85
2355 2484 7.067008 ACAATATGCACAAATTGTACTACTCCC 59.933 37.037 17.67 0.00 42.87 4.30
2356 2485 4.634012 TGCACAAATTGTACTACTCCCT 57.366 40.909 0.00 0.00 0.00 4.20
2357 2486 4.575885 TGCACAAATTGTACTACTCCCTC 58.424 43.478 0.00 0.00 0.00 4.30
2358 2487 4.286032 TGCACAAATTGTACTACTCCCTCT 59.714 41.667 0.00 0.00 0.00 3.69
2359 2488 4.631813 GCACAAATTGTACTACTCCCTCTG 59.368 45.833 0.00 0.00 0.00 3.35
2360 2489 5.794894 CACAAATTGTACTACTCCCTCTGT 58.205 41.667 0.00 0.00 0.00 3.41
2361 2490 6.231211 CACAAATTGTACTACTCCCTCTGTT 58.769 40.000 0.00 0.00 0.00 3.16
2362 2491 6.369065 CACAAATTGTACTACTCCCTCTGTTC 59.631 42.308 0.00 0.00 0.00 3.18
2363 2492 6.042781 ACAAATTGTACTACTCCCTCTGTTCA 59.957 38.462 0.00 0.00 0.00 3.18
2364 2493 6.875972 AATTGTACTACTCCCTCTGTTCAT 57.124 37.500 0.00 0.00 0.00 2.57
2365 2494 6.875972 ATTGTACTACTCCCTCTGTTCATT 57.124 37.500 0.00 0.00 0.00 2.57
2366 2495 6.681729 TTGTACTACTCCCTCTGTTCATTT 57.318 37.500 0.00 0.00 0.00 2.32
2367 2496 6.681729 TGTACTACTCCCTCTGTTCATTTT 57.318 37.500 0.00 0.00 0.00 1.82
2368 2497 7.074653 TGTACTACTCCCTCTGTTCATTTTT 57.925 36.000 0.00 0.00 0.00 1.94
2369 2498 8.197592 TGTACTACTCCCTCTGTTCATTTTTA 57.802 34.615 0.00 0.00 0.00 1.52
2370 2499 8.822805 TGTACTACTCCCTCTGTTCATTTTTAT 58.177 33.333 0.00 0.00 0.00 1.40
2373 2502 9.892130 ACTACTCCCTCTGTTCATTTTTATAAG 57.108 33.333 0.00 0.00 0.00 1.73
2376 2505 9.232473 ACTCCCTCTGTTCATTTTTATAAGAAC 57.768 33.333 7.89 7.89 40.45 3.01
2377 2506 9.454859 CTCCCTCTGTTCATTTTTATAAGAACT 57.545 33.333 13.42 0.00 40.62 3.01
2378 2507 9.807921 TCCCTCTGTTCATTTTTATAAGAACTT 57.192 29.630 13.42 0.00 40.62 2.66
2379 2508 9.846248 CCCTCTGTTCATTTTTATAAGAACTTG 57.154 33.333 13.42 8.52 40.62 3.16
2400 2529 8.130307 ACTTGAAAACATTTTAGACAATGTGC 57.870 30.769 0.00 0.00 44.95 4.57
2401 2530 7.763528 ACTTGAAAACATTTTAGACAATGTGCA 59.236 29.630 0.00 0.00 44.95 4.57
2402 2531 8.484641 TTGAAAACATTTTAGACAATGTGCAA 57.515 26.923 0.00 3.68 44.95 4.08
2403 2532 8.484641 TGAAAACATTTTAGACAATGTGCAAA 57.515 26.923 0.00 0.00 44.95 3.68
2404 2533 8.939929 TGAAAACATTTTAGACAATGTGCAAAA 58.060 25.926 0.00 0.00 44.95 2.44
2405 2534 9.209297 GAAAACATTTTAGACAATGTGCAAAAC 57.791 29.630 0.00 0.00 44.95 2.43
2406 2535 7.840342 AACATTTTAGACAATGTGCAAAACA 57.160 28.000 0.00 0.00 44.95 2.83
2407 2536 7.467557 ACATTTTAGACAATGTGCAAAACAG 57.532 32.000 0.00 0.00 44.19 3.16
2408 2537 5.964887 TTTTAGACAATGTGCAAAACAGC 57.035 34.783 0.00 0.00 43.64 4.40
2409 2538 4.916983 TTAGACAATGTGCAAAACAGCT 57.083 36.364 0.00 0.00 43.64 4.24
2410 2539 3.360249 AGACAATGTGCAAAACAGCTC 57.640 42.857 0.00 0.00 43.64 4.09
2411 2540 2.689471 AGACAATGTGCAAAACAGCTCA 59.311 40.909 0.00 0.00 43.64 4.26
2412 2541 3.319972 AGACAATGTGCAAAACAGCTCAT 59.680 39.130 0.00 0.00 43.64 2.90
2413 2542 4.053295 GACAATGTGCAAAACAGCTCATT 58.947 39.130 9.58 9.58 43.64 2.57
2414 2543 4.444536 ACAATGTGCAAAACAGCTCATTT 58.555 34.783 11.96 4.12 43.64 2.32
2415 2544 4.877251 ACAATGTGCAAAACAGCTCATTTT 59.123 33.333 11.96 5.37 43.64 1.82
2416 2545 6.047870 ACAATGTGCAAAACAGCTCATTTTA 58.952 32.000 11.96 0.00 43.64 1.52
2417 2546 6.538021 ACAATGTGCAAAACAGCTCATTTTAA 59.462 30.769 11.96 0.00 43.64 1.52
2418 2547 7.227116 ACAATGTGCAAAACAGCTCATTTTAAT 59.773 29.630 11.96 0.00 43.64 1.40
2419 2548 7.733402 ATGTGCAAAACAGCTCATTTTAATT 57.267 28.000 5.17 0.00 43.64 1.40
2420 2549 7.551035 TGTGCAAAACAGCTCATTTTAATTT 57.449 28.000 5.17 0.00 33.56 1.82
2421 2550 7.408123 TGTGCAAAACAGCTCATTTTAATTTG 58.592 30.769 5.17 0.00 33.56 2.32
2422 2551 7.065563 TGTGCAAAACAGCTCATTTTAATTTGT 59.934 29.630 5.17 0.00 33.56 2.83
2423 2552 7.583762 GTGCAAAACAGCTCATTTTAATTTGTC 59.416 33.333 5.17 0.00 34.99 3.18
2424 2553 7.495279 TGCAAAACAGCTCATTTTAATTTGTCT 59.505 29.630 5.17 0.00 34.99 3.41
2425 2554 7.795272 GCAAAACAGCTCATTTTAATTTGTCTG 59.205 33.333 5.17 0.00 0.00 3.51
2426 2555 9.033481 CAAAACAGCTCATTTTAATTTGTCTGA 57.967 29.630 5.17 0.00 0.00 3.27
2427 2556 9.598517 AAAACAGCTCATTTTAATTTGTCTGAA 57.401 25.926 3.82 0.00 0.00 3.02
2428 2557 9.598517 AAACAGCTCATTTTAATTTGTCTGAAA 57.401 25.926 0.00 0.00 0.00 2.69
2429 2558 8.579682 ACAGCTCATTTTAATTTGTCTGAAAC 57.420 30.769 0.00 0.00 0.00 2.78
2430 2559 7.379529 ACAGCTCATTTTAATTTGTCTGAAACG 59.620 33.333 0.00 0.00 0.00 3.60
2431 2560 7.591057 CAGCTCATTTTAATTTGTCTGAAACGA 59.409 33.333 0.00 0.00 0.00 3.85
2432 2561 7.591426 AGCTCATTTTAATTTGTCTGAAACGAC 59.409 33.333 0.00 0.00 34.52 4.34
2433 2562 7.591426 GCTCATTTTAATTTGTCTGAAACGACT 59.409 33.333 0.00 0.00 35.00 4.18
2434 2563 9.450807 CTCATTTTAATTTGTCTGAAACGACTT 57.549 29.630 0.00 0.00 35.00 3.01
2442 2571 9.581099 AATTTGTCTGAAACGACTTACAAAATT 57.419 25.926 0.00 0.00 39.45 1.82
2443 2572 7.962934 TTGTCTGAAACGACTTACAAAATTG 57.037 32.000 0.00 0.00 35.00 2.32
2444 2573 7.079182 TGTCTGAAACGACTTACAAAATTGT 57.921 32.000 4.01 4.01 38.63 2.71
2445 2574 8.199176 TGTCTGAAACGACTTACAAAATTGTA 57.801 30.769 1.96 1.96 37.42 2.41
2457 2586 5.432885 ACAAAATTGTAAGTGAACCGAGG 57.567 39.130 0.00 0.00 40.16 4.63
2458 2587 4.277423 ACAAAATTGTAAGTGAACCGAGGG 59.723 41.667 0.00 0.00 40.16 4.30
2459 2588 4.360951 AAATTGTAAGTGAACCGAGGGA 57.639 40.909 0.00 0.00 0.00 4.20
2460 2589 3.611766 ATTGTAAGTGAACCGAGGGAG 57.388 47.619 0.00 0.00 0.00 4.30
2461 2590 2.005370 TGTAAGTGAACCGAGGGAGT 57.995 50.000 0.00 0.00 0.00 3.85
2462 2591 3.159213 TGTAAGTGAACCGAGGGAGTA 57.841 47.619 0.00 0.00 0.00 2.59
2463 2592 3.705051 TGTAAGTGAACCGAGGGAGTAT 58.295 45.455 0.00 0.00 0.00 2.12
2464 2593 4.091549 TGTAAGTGAACCGAGGGAGTATT 58.908 43.478 0.00 0.00 0.00 1.89
2465 2594 5.263599 TGTAAGTGAACCGAGGGAGTATTA 58.736 41.667 0.00 0.00 0.00 0.98
4224 4480 5.965486 TCTTCATCCAGGCCTAGTAGAATA 58.035 41.667 3.98 0.00 0.00 1.75
4256 4512 3.521560 TCGCTAGGTGTAATGCAGAAAG 58.478 45.455 0.00 0.00 0.00 2.62
4264 4520 4.072131 GTGTAATGCAGAAAGGTTCCAGA 58.928 43.478 0.00 0.00 0.00 3.86
4279 4535 4.586841 GGTTCCAGAGCATCAGAGTAGTAT 59.413 45.833 0.00 0.00 37.82 2.12
4280 4536 5.069781 GGTTCCAGAGCATCAGAGTAGTATT 59.930 44.000 0.00 0.00 37.82 1.89
4281 4537 6.265649 GGTTCCAGAGCATCAGAGTAGTATTA 59.734 42.308 0.00 0.00 37.82 0.98
4282 4538 7.039363 GGTTCCAGAGCATCAGAGTAGTATTAT 60.039 40.741 0.00 0.00 37.82 1.28
4327 4586 2.656560 AGAACACACTAGCTTAGCCG 57.343 50.000 0.00 0.00 0.00 5.52
4330 4589 2.833631 ACACACTAGCTTAGCCGTTT 57.166 45.000 0.00 0.00 0.00 3.60
4340 4599 4.766375 AGCTTAGCCGTTTATGTACACAT 58.234 39.130 0.00 0.00 40.22 3.21
4342 4601 6.522054 AGCTTAGCCGTTTATGTACACATAT 58.478 36.000 0.00 0.00 38.49 1.78
4527 4786 2.850060 CGTATGAAACAGTGCGTCGTAT 59.150 45.455 0.00 0.00 0.00 3.06
4774 5036 2.099098 GTCAGGGTATTGATTTTGGCGG 59.901 50.000 0.00 0.00 0.00 6.13
4880 5142 1.066587 GACCTCGGATCCGCAAGAG 59.933 63.158 29.62 20.21 43.02 2.85
5033 5296 0.916086 TCTGGTTGTGGTGGTGAACT 59.084 50.000 0.00 0.00 0.00 3.01
5076 5339 2.617308 CTGCAGATTCCGATGCTGATTT 59.383 45.455 8.42 0.00 42.11 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
211 212 2.596338 TCTCTCGGGCGTGTGTGA 60.596 61.111 0.00 0.00 0.00 3.58
225 226 2.545532 CGAAGAGATGGACATGGCTCTC 60.546 54.545 9.34 9.34 36.76 3.20
226 227 1.411977 CGAAGAGATGGACATGGCTCT 59.588 52.381 0.00 0.00 39.27 4.09
227 228 1.137872 ACGAAGAGATGGACATGGCTC 59.862 52.381 0.00 0.00 0.00 4.70
234 236 5.332656 GCGATAAATTCACGAAGAGATGGAC 60.333 44.000 0.00 0.00 0.00 4.02
235 237 4.745125 GCGATAAATTCACGAAGAGATGGA 59.255 41.667 0.00 0.00 0.00 3.41
241 243 2.093394 TGGGGCGATAAATTCACGAAGA 60.093 45.455 0.00 0.00 0.00 2.87
242 244 2.285083 TGGGGCGATAAATTCACGAAG 58.715 47.619 0.00 0.00 0.00 3.79
251 253 3.358111 TGAACTGATTGGGGCGATAAA 57.642 42.857 0.00 0.00 0.00 1.40
252 254 3.118075 TGATGAACTGATTGGGGCGATAA 60.118 43.478 0.00 0.00 0.00 1.75
253 255 2.437651 TGATGAACTGATTGGGGCGATA 59.562 45.455 0.00 0.00 0.00 2.92
254 256 1.212688 TGATGAACTGATTGGGGCGAT 59.787 47.619 0.00 0.00 0.00 4.58
255 257 0.617935 TGATGAACTGATTGGGGCGA 59.382 50.000 0.00 0.00 0.00 5.54
257 259 3.571401 CCTATTGATGAACTGATTGGGGC 59.429 47.826 0.00 0.00 0.00 5.80
258 260 5.052693 TCCTATTGATGAACTGATTGGGG 57.947 43.478 0.00 0.00 0.00 4.96
259 261 4.518211 GCTCCTATTGATGAACTGATTGGG 59.482 45.833 0.00 0.00 0.00 4.12
260 262 5.128205 TGCTCCTATTGATGAACTGATTGG 58.872 41.667 0.00 0.00 0.00 3.16
263 265 4.387598 GCTGCTCCTATTGATGAACTGAT 58.612 43.478 0.00 0.00 0.00 2.90
330 332 1.656095 GAATGCGTACTCTCTGTGTGC 59.344 52.381 0.00 0.00 0.00 4.57
385 432 9.314321 TCCACGTACTACTGTTATTACTACTAC 57.686 37.037 0.00 0.00 0.00 2.73
386 433 9.534565 CTCCACGTACTACTGTTATTACTACTA 57.465 37.037 0.00 0.00 0.00 1.82
387 434 8.260818 TCTCCACGTACTACTGTTATTACTACT 58.739 37.037 0.00 0.00 0.00 2.57
388 435 8.425577 TCTCCACGTACTACTGTTATTACTAC 57.574 38.462 0.00 0.00 0.00 2.73
389 436 9.448438 TTTCTCCACGTACTACTGTTATTACTA 57.552 33.333 0.00 0.00 0.00 1.82
390 437 7.928307 TTCTCCACGTACTACTGTTATTACT 57.072 36.000 0.00 0.00 0.00 2.24
391 438 7.699812 CCTTTCTCCACGTACTACTGTTATTAC 59.300 40.741 0.00 0.00 0.00 1.89
392 439 7.629222 GCCTTTCTCCACGTACTACTGTTATTA 60.629 40.741 0.00 0.00 0.00 0.98
393 440 6.628185 CCTTTCTCCACGTACTACTGTTATT 58.372 40.000 0.00 0.00 0.00 1.40
394 441 5.393896 GCCTTTCTCCACGTACTACTGTTAT 60.394 44.000 0.00 0.00 0.00 1.89
395 442 4.082571 GCCTTTCTCCACGTACTACTGTTA 60.083 45.833 0.00 0.00 0.00 2.41
396 443 3.305881 GCCTTTCTCCACGTACTACTGTT 60.306 47.826 0.00 0.00 0.00 3.16
397 444 2.230750 GCCTTTCTCCACGTACTACTGT 59.769 50.000 0.00 0.00 0.00 3.55
398 445 2.416972 GGCCTTTCTCCACGTACTACTG 60.417 54.545 0.00 0.00 0.00 2.74
399 446 1.823610 GGCCTTTCTCCACGTACTACT 59.176 52.381 0.00 0.00 0.00 2.57
400 447 1.547372 TGGCCTTTCTCCACGTACTAC 59.453 52.381 3.32 0.00 0.00 2.73
401 448 1.927487 TGGCCTTTCTCCACGTACTA 58.073 50.000 3.32 0.00 0.00 1.82
402 449 1.002087 CTTGGCCTTTCTCCACGTACT 59.998 52.381 3.32 0.00 32.45 2.73
403 450 1.270678 ACTTGGCCTTTCTCCACGTAC 60.271 52.381 3.32 0.00 34.78 3.67
404 451 1.053424 ACTTGGCCTTTCTCCACGTA 58.947 50.000 3.32 0.00 34.78 3.57
405 452 0.535102 CACTTGGCCTTTCTCCACGT 60.535 55.000 3.32 0.00 36.64 4.49
406 453 0.535102 ACACTTGGCCTTTCTCCACG 60.535 55.000 3.32 0.00 32.45 4.94
574 644 2.261172 TATGATATCCGTCGCGCCCG 62.261 60.000 0.00 6.07 0.00 6.13
575 645 0.108992 TTATGATATCCGTCGCGCCC 60.109 55.000 0.00 0.00 0.00 6.13
576 646 1.852895 GATTATGATATCCGTCGCGCC 59.147 52.381 0.00 0.00 0.00 6.53
577 647 2.798680 AGATTATGATATCCGTCGCGC 58.201 47.619 0.00 0.00 0.00 6.86
717 794 4.374702 CTCACACTTGTGCCGCGC 62.375 66.667 0.00 0.00 45.25 6.86
718 795 4.374702 GCTCACACTTGTGCCGCG 62.375 66.667 0.00 0.00 45.25 6.46
721 798 2.633657 CACGCTCACACTTGTGCC 59.366 61.111 4.38 0.00 45.25 5.01
724 801 0.530650 CAGTCCACGCTCACACTTGT 60.531 55.000 0.00 0.00 0.00 3.16
726 803 1.069765 CCAGTCCACGCTCACACTT 59.930 57.895 0.00 0.00 0.00 3.16
751 828 5.360714 CAGAAGAGAAGCAGAAGAGGTAGAT 59.639 44.000 0.00 0.00 0.00 1.98
767 844 3.513515 GGAGGAAGAAGAAGCAGAAGAGA 59.486 47.826 0.00 0.00 0.00 3.10
768 845 3.260380 TGGAGGAAGAAGAAGCAGAAGAG 59.740 47.826 0.00 0.00 0.00 2.85
769 846 3.007398 GTGGAGGAAGAAGAAGCAGAAGA 59.993 47.826 0.00 0.00 0.00 2.87
770 847 3.333804 GTGGAGGAAGAAGAAGCAGAAG 58.666 50.000 0.00 0.00 0.00 2.85
771 848 2.039084 GGTGGAGGAAGAAGAAGCAGAA 59.961 50.000 0.00 0.00 0.00 3.02
772 849 1.625818 GGTGGAGGAAGAAGAAGCAGA 59.374 52.381 0.00 0.00 0.00 4.26
773 850 1.627834 AGGTGGAGGAAGAAGAAGCAG 59.372 52.381 0.00 0.00 0.00 4.24
774 851 1.734655 AGGTGGAGGAAGAAGAAGCA 58.265 50.000 0.00 0.00 0.00 3.91
775 852 2.835156 AGTAGGTGGAGGAAGAAGAAGC 59.165 50.000 0.00 0.00 0.00 3.86
789 866 0.459237 CTCAAGAGCGGCAGTAGGTG 60.459 60.000 1.45 0.00 0.00 4.00
826 903 1.765074 TGGTTTACCCACCTCCTGC 59.235 57.895 0.00 0.00 38.72 4.85
855 932 1.521234 GAGCTCAGGCAGTAGCAGC 60.521 63.158 9.40 0.00 44.61 5.25
858 935 0.248843 AACAGAGCTCAGGCAGTAGC 59.751 55.000 17.77 0.00 41.70 3.58
869 946 3.448660 GCAATCCCCATAAAAACAGAGCT 59.551 43.478 0.00 0.00 0.00 4.09
880 957 1.500303 AGAGCAATGGCAATCCCCATA 59.500 47.619 0.00 0.00 44.68 2.74
898 975 4.285517 AGCACAGAGAAAGAGGAATTCAGA 59.714 41.667 7.93 0.00 0.00 3.27
902 979 4.041444 ACAGAGCACAGAGAAAGAGGAATT 59.959 41.667 0.00 0.00 0.00 2.17
986 1063 2.176045 TCTTCATCGTACCAGGCTTCA 58.824 47.619 0.00 0.00 0.00 3.02
989 1066 1.134670 GCTTCTTCATCGTACCAGGCT 60.135 52.381 0.00 0.00 0.00 4.58
991 1068 2.544685 CAGCTTCTTCATCGTACCAGG 58.455 52.381 0.00 0.00 0.00 4.45
994 1071 2.271800 CACCAGCTTCTTCATCGTACC 58.728 52.381 0.00 0.00 0.00 3.34
995 1072 2.960819 ACACCAGCTTCTTCATCGTAC 58.039 47.619 0.00 0.00 0.00 3.67
996 1073 3.258372 AGAACACCAGCTTCTTCATCGTA 59.742 43.478 0.00 0.00 0.00 3.43
1003 1080 2.158696 AGAGCAAGAACACCAGCTTCTT 60.159 45.455 0.00 0.00 38.29 2.52
1059 1136 4.994907 AAAGCAGATTCAAGCATATGCA 57.005 36.364 28.62 9.21 42.74 3.96
1064 1141 5.047519 AGCAAAGTAAAGCAGATTCAAGCAT 60.048 36.000 4.31 0.00 0.00 3.79
1065 1142 4.279169 AGCAAAGTAAAGCAGATTCAAGCA 59.721 37.500 4.31 0.00 0.00 3.91
1066 1143 4.802999 AGCAAAGTAAAGCAGATTCAAGC 58.197 39.130 0.00 0.00 0.00 4.01
1067 1144 6.026513 GCTAGCAAAGTAAAGCAGATTCAAG 58.973 40.000 10.63 0.00 35.05 3.02
1070 1147 5.809719 AGCTAGCAAAGTAAAGCAGATTC 57.190 39.130 18.83 0.00 37.44 2.52
1079 1156 7.363268 GGTGGTAGTTACTAGCTAGCAAAGTAA 60.363 40.741 26.45 26.45 44.91 2.24
1091 1168 4.345257 AGGATGCATGGTGGTAGTTACTAG 59.655 45.833 2.46 0.00 0.00 2.57
1097 1174 4.270008 GTTTAAGGATGCATGGTGGTAGT 58.730 43.478 2.46 0.00 0.00 2.73
1099 1176 3.010696 TGGTTTAAGGATGCATGGTGGTA 59.989 43.478 2.46 0.00 0.00 3.25
1109 1186 9.717942 TTTAATTGGTTCATTGGTTTAAGGATG 57.282 29.630 0.00 0.00 0.00 3.51
1134 1223 8.210946 TCTCATGGAATGTAGTTATCCGATTTT 58.789 33.333 0.00 0.00 46.80 1.82
1135 1224 7.735917 TCTCATGGAATGTAGTTATCCGATTT 58.264 34.615 0.00 0.00 46.80 2.17
1145 1234 7.121759 CACAAGGATTTTCTCATGGAATGTAGT 59.878 37.037 0.00 0.00 46.80 2.73
1146 1235 7.415989 CCACAAGGATTTTCTCATGGAATGTAG 60.416 40.741 0.00 0.00 41.05 2.74
1148 1237 5.186409 CCACAAGGATTTTCTCATGGAATGT 59.814 40.000 0.00 0.00 41.05 2.71
1163 1252 6.123651 TGTGTTACAACTAAACCACAAGGAT 58.876 36.000 0.00 0.00 38.69 3.24
1164 1253 5.498393 TGTGTTACAACTAAACCACAAGGA 58.502 37.500 0.00 0.00 38.69 3.36
1165 1254 5.732247 GCTGTGTTACAACTAAACCACAAGG 60.732 44.000 0.00 0.00 42.21 3.61
1166 1255 5.065988 AGCTGTGTTACAACTAAACCACAAG 59.934 40.000 0.00 0.00 0.00 3.16
1168 1257 4.334203 CAGCTGTGTTACAACTAAACCACA 59.666 41.667 5.25 0.00 0.00 4.17
1249 1341 2.740055 CTTGCCTCGACGCTTGCT 60.740 61.111 7.89 0.00 0.00 3.91
1272 1364 1.300233 CCTACGAGAGAATGGGCGC 60.300 63.158 0.00 0.00 0.00 6.53
1274 1366 4.810191 ATATTCCTACGAGAGAATGGGC 57.190 45.455 0.00 0.00 34.60 5.36
1286 1391 6.142958 GCGTAACGGTTGAGTAATATTCCTAC 59.857 42.308 3.07 0.00 0.00 3.18
1292 1397 3.721035 GGGCGTAACGGTTGAGTAATAT 58.279 45.455 3.07 0.00 0.00 1.28
1305 1411 1.459592 CTATGCTATTGCGGGCGTAAC 59.540 52.381 0.00 0.00 43.34 2.50
1311 1417 3.270877 GGGTTATCTATGCTATTGCGGG 58.729 50.000 0.00 0.00 43.34 6.13
1313 1419 5.412594 ACATTGGGTTATCTATGCTATTGCG 59.587 40.000 0.00 0.00 43.34 4.85
1333 1439 6.610075 AAAAATCATCTGCCCTTGTACATT 57.390 33.333 0.00 0.00 0.00 2.71
1363 1469 1.423541 TCCTCTGCTAAACAAAGGCCA 59.576 47.619 5.01 0.00 0.00 5.36
1366 1472 5.586643 GGTAATCTCCTCTGCTAAACAAAGG 59.413 44.000 0.00 0.00 0.00 3.11
1370 1476 5.674525 CATGGTAATCTCCTCTGCTAAACA 58.325 41.667 0.00 0.00 0.00 2.83
1372 1478 4.164030 TGCATGGTAATCTCCTCTGCTAAA 59.836 41.667 0.00 0.00 37.56 1.85
1437 1543 0.873721 GGCCCGTTTTAACTTGCGTA 59.126 50.000 0.00 0.00 0.00 4.42
1499 1605 6.800072 AGGTACGTACTACTAGGTAAGAGT 57.200 41.667 24.07 0.00 0.00 3.24
1683 1789 8.307483 CAGACAAAAGAATAGAGAAGTAGACCA 58.693 37.037 0.00 0.00 0.00 4.02
1699 1810 5.470098 GGACAGCATAAAGACAGACAAAAGA 59.530 40.000 0.00 0.00 0.00 2.52
1700 1811 5.335191 GGGACAGCATAAAGACAGACAAAAG 60.335 44.000 0.00 0.00 0.00 2.27
1751 1862 0.672342 CTTATACACCCGGACGGAGG 59.328 60.000 13.13 6.21 37.50 4.30
1752 1863 1.336125 GACTTATACACCCGGACGGAG 59.664 57.143 13.13 6.96 37.50 4.63
1753 1864 1.340893 TGACTTATACACCCGGACGGA 60.341 52.381 13.13 0.00 37.50 4.69
1754 1865 1.105457 TGACTTATACACCCGGACGG 58.895 55.000 0.73 3.25 37.81 4.79
1755 1866 3.378339 GAATGACTTATACACCCGGACG 58.622 50.000 0.73 0.00 0.00 4.79
1756 1867 3.378339 CGAATGACTTATACACCCGGAC 58.622 50.000 0.73 0.00 0.00 4.79
1757 1868 2.223876 GCGAATGACTTATACACCCGGA 60.224 50.000 0.73 0.00 0.00 5.14
1758 1869 2.132762 GCGAATGACTTATACACCCGG 58.867 52.381 0.00 0.00 0.00 5.73
1759 1870 1.784856 CGCGAATGACTTATACACCCG 59.215 52.381 0.00 0.00 0.00 5.28
1760 1871 2.817901 ACGCGAATGACTTATACACCC 58.182 47.619 15.93 0.00 0.00 4.61
1761 1872 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
1762 1873 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
1763 1874 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
1764 1875 6.796072 CCTAGAACTACGCGAATGACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
1765 1876 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
1766 1877 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
1767 1878 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
1768 1879 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
1769 1880 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
1770 1881 3.181503 TGACCTAGAACTACGCGAATGAC 60.182 47.826 15.93 0.66 0.00 3.06
1771 1882 3.011818 TGACCTAGAACTACGCGAATGA 58.988 45.455 15.93 0.00 0.00 2.57
1772 1883 3.416119 TGACCTAGAACTACGCGAATG 57.584 47.619 15.93 4.47 0.00 2.67
1773 1884 3.303857 CGATGACCTAGAACTACGCGAAT 60.304 47.826 15.93 0.00 0.00 3.34
1774 1885 2.031314 CGATGACCTAGAACTACGCGAA 59.969 50.000 15.93 0.00 0.00 4.70
1775 1886 1.596260 CGATGACCTAGAACTACGCGA 59.404 52.381 15.93 0.00 0.00 5.87
1776 1887 1.596260 TCGATGACCTAGAACTACGCG 59.404 52.381 3.53 3.53 0.00 6.01
1777 1888 3.900388 ATCGATGACCTAGAACTACGC 57.100 47.619 0.00 0.00 0.00 4.42
1778 1889 5.817988 TCAAATCGATGACCTAGAACTACG 58.182 41.667 0.00 0.00 0.00 3.51
1779 1890 6.039493 TCCTCAAATCGATGACCTAGAACTAC 59.961 42.308 0.00 0.00 0.00 2.73
1780 1891 6.127101 TCCTCAAATCGATGACCTAGAACTA 58.873 40.000 0.00 0.00 0.00 2.24
1781 1892 4.956700 TCCTCAAATCGATGACCTAGAACT 59.043 41.667 0.00 0.00 0.00 3.01
1782 1893 5.263968 TCCTCAAATCGATGACCTAGAAC 57.736 43.478 0.00 0.00 0.00 3.01
1783 1894 5.932619 TTCCTCAAATCGATGACCTAGAA 57.067 39.130 0.00 0.00 0.00 2.10
1784 1895 6.485830 AATTCCTCAAATCGATGACCTAGA 57.514 37.500 0.00 0.00 0.00 2.43
1785 1896 8.662781 TTTAATTCCTCAAATCGATGACCTAG 57.337 34.615 0.00 0.00 0.00 3.02
1787 1898 9.799106 ATATTTAATTCCTCAAATCGATGACCT 57.201 29.630 0.00 0.00 0.00 3.85
1788 1899 9.831737 CATATTTAATTCCTCAAATCGATGACC 57.168 33.333 0.00 0.00 0.00 4.02
1824 1935 9.832445 GGAAATCTAGTGGTATACTTTTCATGA 57.168 33.333 2.25 0.00 40.89 3.07
1825 1936 9.613428 TGGAAATCTAGTGGTATACTTTTCATG 57.387 33.333 2.25 0.00 40.89 3.07
1826 1937 9.614792 GTGGAAATCTAGTGGTATACTTTTCAT 57.385 33.333 2.25 0.00 40.89 2.57
1827 1938 8.598916 TGTGGAAATCTAGTGGTATACTTTTCA 58.401 33.333 2.25 0.00 40.89 2.69
1828 1939 8.880750 GTGTGGAAATCTAGTGGTATACTTTTC 58.119 37.037 2.25 0.00 40.89 2.29
1829 1940 7.548075 CGTGTGGAAATCTAGTGGTATACTTTT 59.452 37.037 2.25 0.00 40.89 2.27
1830 1941 7.039882 CGTGTGGAAATCTAGTGGTATACTTT 58.960 38.462 2.25 0.00 40.89 2.66
1831 1942 6.406624 CCGTGTGGAAATCTAGTGGTATACTT 60.407 42.308 2.25 0.00 37.99 2.24
1832 1943 5.068723 CCGTGTGGAAATCTAGTGGTATACT 59.931 44.000 2.25 0.00 39.66 2.12
1833 1944 5.068198 TCCGTGTGGAAATCTAGTGGTATAC 59.932 44.000 0.00 0.00 42.85 1.47
1834 1945 5.202765 TCCGTGTGGAAATCTAGTGGTATA 58.797 41.667 0.00 0.00 42.85 1.47
1835 1946 4.028131 TCCGTGTGGAAATCTAGTGGTAT 58.972 43.478 0.00 0.00 42.85 2.73
1836 1947 3.433343 TCCGTGTGGAAATCTAGTGGTA 58.567 45.455 0.00 0.00 42.85 3.25
1837 1948 2.253610 TCCGTGTGGAAATCTAGTGGT 58.746 47.619 0.00 0.00 42.85 4.16
1849 1960 5.873179 ATTTACAAACTACATCCGTGTGG 57.127 39.130 0.00 0.00 42.04 4.17
1907 2018 7.859875 GCGTAGTTCTAGGTCGATAATTTAACT 59.140 37.037 0.00 0.00 0.00 2.24
1908 2019 7.149224 CGCGTAGTTCTAGGTCGATAATTTAAC 60.149 40.741 0.00 0.00 0.00 2.01
1909 2020 6.852853 CGCGTAGTTCTAGGTCGATAATTTAA 59.147 38.462 0.00 0.00 0.00 1.52
1910 2021 6.202762 TCGCGTAGTTCTAGGTCGATAATTTA 59.797 38.462 5.77 0.00 0.00 1.40
1911 2022 5.008019 TCGCGTAGTTCTAGGTCGATAATTT 59.992 40.000 5.77 0.00 0.00 1.82
1912 2023 4.512944 TCGCGTAGTTCTAGGTCGATAATT 59.487 41.667 5.77 0.00 0.00 1.40
1913 2024 4.060900 TCGCGTAGTTCTAGGTCGATAAT 58.939 43.478 5.77 0.00 0.00 1.28
1914 2025 3.457234 TCGCGTAGTTCTAGGTCGATAA 58.543 45.455 5.77 0.00 0.00 1.75
1915 2026 3.097877 TCGCGTAGTTCTAGGTCGATA 57.902 47.619 5.77 0.00 0.00 2.92
1916 2027 1.945387 TCGCGTAGTTCTAGGTCGAT 58.055 50.000 5.77 0.00 0.00 3.59
1917 2028 1.725641 TTCGCGTAGTTCTAGGTCGA 58.274 50.000 5.77 11.56 0.00 4.20
1918 2029 2.031314 TCATTCGCGTAGTTCTAGGTCG 59.969 50.000 5.77 5.99 0.00 4.79
1919 2030 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
1920 2031 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
1921 2032 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
1922 2033 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
1923 2034 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
1924 2035 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
1925 2036 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
1926 2037 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
1927 2038 4.604976 GGTGTATAAGTCATTCGCGTAGT 58.395 43.478 5.77 0.00 0.00 2.73
1928 2039 3.662645 CGGTGTATAAGTCATTCGCGTAG 59.337 47.826 5.77 0.00 0.00 3.51
1929 2040 3.548616 CCGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
1930 2041 2.456989 CGGTGTATAAGTCATTCGCGT 58.543 47.619 5.77 0.00 0.00 6.01
1931 2042 1.784856 CCGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
1932 2043 2.132762 CCCGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
1933 2044 3.378339 GTCCCGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
1934 2045 3.378339 CGTCCCGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
1935 2046 2.101917 CCGTCCCGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 42.73 2.57
1936 2047 1.684983 CCGTCCCGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 42.73 3.06
1937 2048 1.105457 CCGTCCCGGTGTATAAGTCA 58.895 55.000 0.00 0.00 42.73 3.41
1938 2049 3.953201 CCGTCCCGGTGTATAAGTC 57.047 57.895 0.00 0.00 42.73 3.01
1949 2060 1.139853 ACTAGTACTACCTCCGTCCCG 59.860 57.143 0.00 0.00 0.00 5.14
1950 2061 4.632327 ATACTAGTACTACCTCCGTCCC 57.368 50.000 4.31 0.00 0.00 4.46
1951 2062 9.726438 TTATAAATACTAGTACTACCTCCGTCC 57.274 37.037 4.31 0.00 0.00 4.79
1995 2106 1.144969 TTCCGCTTGCTTTGTCTACG 58.855 50.000 0.00 0.00 0.00 3.51
1996 2107 2.548480 ACTTTCCGCTTGCTTTGTCTAC 59.452 45.455 0.00 0.00 0.00 2.59
1997 2108 2.846193 ACTTTCCGCTTGCTTTGTCTA 58.154 42.857 0.00 0.00 0.00 2.59
2035 2146 3.986572 GGATCAGCAGATAATCAGACACG 59.013 47.826 0.00 0.00 33.72 4.49
2097 2211 2.539338 GGCGTCCGTGTTGCTTTCA 61.539 57.895 0.00 0.00 0.00 2.69
2108 2222 1.659098 GTTTCATCTACTTGGCGTCCG 59.341 52.381 0.00 0.00 0.00 4.79
2198 2319 1.922821 CCCGGAAATGGATCCTGGT 59.077 57.895 14.23 0.00 38.63 4.00
2207 2328 4.395231 GGTAGAAAGAAAGACCCGGAAATG 59.605 45.833 0.73 0.00 0.00 2.32
2220 2341 2.026915 GGTTTAGGCCGGGTAGAAAGAA 60.027 50.000 2.18 0.00 0.00 2.52
2292 2417 1.065636 GCCCAGTACCCAAACTAGACC 60.066 57.143 0.00 0.00 0.00 3.85
2301 2426 1.063070 TGGTTTGAGCCCAGTACCCA 61.063 55.000 0.00 0.00 31.59 4.51
2329 2454 7.067008 GGGAGTAGTACAATTTGTGCATATTGT 59.933 37.037 20.95 20.95 42.62 2.71
2330 2455 7.283127 AGGGAGTAGTACAATTTGTGCATATTG 59.717 37.037 18.02 14.08 35.34 1.90
2331 2456 7.346471 AGGGAGTAGTACAATTTGTGCATATT 58.654 34.615 18.02 6.24 35.34 1.28
2351 2480 9.454859 AGTTCTTATAAAAATGAACAGAGGGAG 57.545 33.333 14.32 0.00 40.62 4.30
2353 2482 9.846248 CAAGTTCTTATAAAAATGAACAGAGGG 57.154 33.333 14.32 0.83 40.62 4.30
2374 2503 8.603181 GCACATTGTCTAAAATGTTTTCAAGTT 58.397 29.630 0.00 0.00 46.19 2.66
2375 2504 7.763528 TGCACATTGTCTAAAATGTTTTCAAGT 59.236 29.630 0.00 0.00 46.19 3.16
2376 2505 8.129161 TGCACATTGTCTAAAATGTTTTCAAG 57.871 30.769 0.00 0.00 46.19 3.02
2377 2506 8.484641 TTGCACATTGTCTAAAATGTTTTCAA 57.515 26.923 0.00 3.47 46.19 2.69
2378 2507 8.484641 TTTGCACATTGTCTAAAATGTTTTCA 57.515 26.923 0.00 0.00 46.19 2.69
2379 2508 9.209297 GTTTTGCACATTGTCTAAAATGTTTTC 57.791 29.630 9.59 0.00 46.19 2.29
2380 2509 8.725148 TGTTTTGCACATTGTCTAAAATGTTTT 58.275 25.926 9.59 0.00 46.19 2.43
2381 2510 8.261492 TGTTTTGCACATTGTCTAAAATGTTT 57.739 26.923 9.59 0.00 46.19 2.83
2382 2511 7.465781 GCTGTTTTGCACATTGTCTAAAATGTT 60.466 33.333 9.59 0.00 46.19 2.71
2384 2513 6.201425 AGCTGTTTTGCACATTGTCTAAAATG 59.799 34.615 9.59 0.00 42.21 2.32
2385 2514 6.282930 AGCTGTTTTGCACATTGTCTAAAAT 58.717 32.000 9.59 0.00 33.76 1.82
2386 2515 5.659463 AGCTGTTTTGCACATTGTCTAAAA 58.341 33.333 0.00 4.46 33.76 1.52
2387 2516 5.163571 TGAGCTGTTTTGCACATTGTCTAAA 60.164 36.000 0.00 0.00 33.76 1.85
2388 2517 4.337836 TGAGCTGTTTTGCACATTGTCTAA 59.662 37.500 0.00 0.00 33.76 2.10
2389 2518 3.882288 TGAGCTGTTTTGCACATTGTCTA 59.118 39.130 0.00 0.00 33.76 2.59
2390 2519 2.689471 TGAGCTGTTTTGCACATTGTCT 59.311 40.909 0.00 0.00 33.76 3.41
2391 2520 3.082698 TGAGCTGTTTTGCACATTGTC 57.917 42.857 0.00 0.00 33.76 3.18
2392 2521 3.738830 ATGAGCTGTTTTGCACATTGT 57.261 38.095 0.00 0.00 40.34 2.71
2395 2524 7.733402 AATTAAAATGAGCTGTTTTGCACAT 57.267 28.000 13.83 0.00 43.89 3.21
2396 2525 7.065563 ACAAATTAAAATGAGCTGTTTTGCACA 59.934 29.630 13.83 0.00 37.87 4.57
2397 2526 7.408910 ACAAATTAAAATGAGCTGTTTTGCAC 58.591 30.769 13.83 0.00 34.99 4.57
2398 2527 7.495279 AGACAAATTAAAATGAGCTGTTTTGCA 59.505 29.630 13.83 0.00 34.99 4.08
2399 2528 7.795272 CAGACAAATTAAAATGAGCTGTTTTGC 59.205 33.333 13.83 0.00 31.71 3.68
2400 2529 9.033481 TCAGACAAATTAAAATGAGCTGTTTTG 57.967 29.630 13.83 0.00 31.71 2.44
2401 2530 9.598517 TTCAGACAAATTAAAATGAGCTGTTTT 57.401 25.926 10.31 10.31 33.67 2.43
2402 2531 9.598517 TTTCAGACAAATTAAAATGAGCTGTTT 57.401 25.926 0.00 0.00 0.00 2.83
2403 2532 9.034544 GTTTCAGACAAATTAAAATGAGCTGTT 57.965 29.630 0.00 0.00 0.00 3.16
2404 2533 7.379529 CGTTTCAGACAAATTAAAATGAGCTGT 59.620 33.333 0.00 0.00 0.00 4.40
2405 2534 7.591057 TCGTTTCAGACAAATTAAAATGAGCTG 59.409 33.333 0.00 0.00 0.00 4.24
2406 2535 7.591426 GTCGTTTCAGACAAATTAAAATGAGCT 59.409 33.333 0.00 0.00 40.65 4.09
2407 2536 7.591426 AGTCGTTTCAGACAAATTAAAATGAGC 59.409 33.333 0.00 0.00 43.24 4.26
2408 2537 9.450807 AAGTCGTTTCAGACAAATTAAAATGAG 57.549 29.630 0.00 0.00 43.24 2.90
2416 2545 9.581099 AATTTTGTAAGTCGTTTCAGACAAATT 57.419 25.926 0.00 1.00 43.24 1.82
2417 2546 9.019764 CAATTTTGTAAGTCGTTTCAGACAAAT 57.980 29.630 0.00 0.00 43.24 2.32
2418 2547 8.024285 ACAATTTTGTAAGTCGTTTCAGACAAA 58.976 29.630 0.00 0.00 40.51 2.83
2419 2548 7.531716 ACAATTTTGTAAGTCGTTTCAGACAA 58.468 30.769 0.00 0.00 40.51 3.18
2420 2549 7.079182 ACAATTTTGTAAGTCGTTTCAGACA 57.921 32.000 0.00 0.00 40.51 3.41
2434 2563 5.470777 CCCTCGGTTCACTTACAATTTTGTA 59.529 40.000 0.00 0.00 42.35 2.41
2435 2564 4.277423 CCCTCGGTTCACTTACAATTTTGT 59.723 41.667 1.08 1.08 44.86 2.83
2436 2565 4.517453 TCCCTCGGTTCACTTACAATTTTG 59.483 41.667 0.00 0.00 0.00 2.44
2437 2566 4.721132 TCCCTCGGTTCACTTACAATTTT 58.279 39.130 0.00 0.00 0.00 1.82
2438 2567 4.202430 ACTCCCTCGGTTCACTTACAATTT 60.202 41.667 0.00 0.00 0.00 1.82
2439 2568 3.326880 ACTCCCTCGGTTCACTTACAATT 59.673 43.478 0.00 0.00 0.00 2.32
2440 2569 2.904434 ACTCCCTCGGTTCACTTACAAT 59.096 45.455 0.00 0.00 0.00 2.71
2441 2570 2.322658 ACTCCCTCGGTTCACTTACAA 58.677 47.619 0.00 0.00 0.00 2.41
2442 2571 2.005370 ACTCCCTCGGTTCACTTACA 57.995 50.000 0.00 0.00 0.00 2.41
2443 2572 4.732672 AATACTCCCTCGGTTCACTTAC 57.267 45.455 0.00 0.00 0.00 2.34
2444 2573 6.837568 AGAATAATACTCCCTCGGTTCACTTA 59.162 38.462 0.00 0.00 0.00 2.24
2445 2574 5.661759 AGAATAATACTCCCTCGGTTCACTT 59.338 40.000 0.00 0.00 0.00 3.16
2446 2575 5.209659 AGAATAATACTCCCTCGGTTCACT 58.790 41.667 0.00 0.00 0.00 3.41
2447 2576 5.532664 AGAATAATACTCCCTCGGTTCAC 57.467 43.478 0.00 0.00 0.00 3.18
2448 2577 6.238842 CGTAAGAATAATACTCCCTCGGTTCA 60.239 42.308 0.00 0.00 43.02 3.18
2449 2578 6.148264 CGTAAGAATAATACTCCCTCGGTTC 58.852 44.000 0.00 0.00 43.02 3.62
2450 2579 5.595952 ACGTAAGAATAATACTCCCTCGGTT 59.404 40.000 0.00 0.00 43.62 4.44
2451 2580 5.136105 ACGTAAGAATAATACTCCCTCGGT 58.864 41.667 0.00 0.00 43.62 4.69
2452 2581 5.616424 CGACGTAAGAATAATACTCCCTCGG 60.616 48.000 0.00 0.00 43.62 4.63
2453 2582 5.380651 CGACGTAAGAATAATACTCCCTCG 58.619 45.833 0.00 0.00 43.62 4.63
2454 2583 5.240403 ACCGACGTAAGAATAATACTCCCTC 59.760 44.000 0.00 0.00 43.62 4.30
2455 2584 5.136105 ACCGACGTAAGAATAATACTCCCT 58.864 41.667 0.00 0.00 43.62 4.20
2456 2585 5.444663 ACCGACGTAAGAATAATACTCCC 57.555 43.478 0.00 0.00 43.62 4.30
2457 2586 5.142962 CGACCGACGTAAGAATAATACTCC 58.857 45.833 0.00 0.00 43.62 3.85
2985 3226 1.792632 CGTCGCGTTGCTCTGTATGTA 60.793 52.381 5.77 0.00 0.00 2.29
4256 4512 2.763448 ACTACTCTGATGCTCTGGAACC 59.237 50.000 0.00 0.00 0.00 3.62
4294 4550 6.519679 AGTGTGTTCTATCACGTGGTAATA 57.480 37.500 17.00 5.50 40.74 0.98
4296 4552 4.859304 AGTGTGTTCTATCACGTGGTAA 57.141 40.909 17.00 0.00 40.74 2.85
4300 4556 4.098055 AGCTAGTGTGTTCTATCACGTG 57.902 45.455 9.94 9.94 40.74 4.49
4301 4557 4.785511 AAGCTAGTGTGTTCTATCACGT 57.214 40.909 0.00 0.00 40.74 4.49
4302 4558 4.735822 GCTAAGCTAGTGTGTTCTATCACG 59.264 45.833 0.00 0.00 40.74 4.35
4305 4561 4.202030 ACGGCTAAGCTAGTGTGTTCTATC 60.202 45.833 0.00 0.00 0.00 2.08
4306 4562 3.700038 ACGGCTAAGCTAGTGTGTTCTAT 59.300 43.478 0.00 0.00 0.00 1.98
4330 4589 9.866798 TTGTACGGTGTAAAATATGTGTACATA 57.133 29.630 0.00 7.14 40.15 2.29
4361 4620 0.610232 CCCTTCCCACAGCCTTCTTG 60.610 60.000 0.00 0.00 0.00 3.02
4362 4621 1.770324 CCCTTCCCACAGCCTTCTT 59.230 57.895 0.00 0.00 0.00 2.52
4363 4622 2.234296 CCCCTTCCCACAGCCTTCT 61.234 63.158 0.00 0.00 0.00 2.85
4364 4623 2.356667 CCCCTTCCCACAGCCTTC 59.643 66.667 0.00 0.00 0.00 3.46
4365 4624 3.984732 GCCCCTTCCCACAGCCTT 61.985 66.667 0.00 0.00 0.00 4.35
4368 4627 4.660938 AACGCCCCTTCCCACAGC 62.661 66.667 0.00 0.00 0.00 4.40
4369 4628 1.530655 AAAACGCCCCTTCCCACAG 60.531 57.895 0.00 0.00 0.00 3.66
4370 4629 1.830408 CAAAACGCCCCTTCCCACA 60.830 57.895 0.00 0.00 0.00 4.17
4371 4630 2.570284 CCAAAACGCCCCTTCCCAC 61.570 63.158 0.00 0.00 0.00 4.61
4372 4631 2.203567 CCAAAACGCCCCTTCCCA 60.204 61.111 0.00 0.00 0.00 4.37
4373 4632 3.691342 GCCAAAACGCCCCTTCCC 61.691 66.667 0.00 0.00 0.00 3.97
4774 5036 2.399611 CGTCGCCAAAATCCTCGC 59.600 61.111 0.00 0.00 0.00 5.03
5033 5296 3.884774 AACAACCCCTGCTCCGCA 61.885 61.111 0.00 0.00 36.92 5.69
5049 5312 0.911769 ATCGGAATCTGCAGGGACAA 59.088 50.000 15.13 0.00 0.00 3.18
5076 5339 3.010027 TCCAATCTGCTACCCACAATCAA 59.990 43.478 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.