Multiple sequence alignment - TraesCS4D01G259100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G259100 chr4D 100.000 5836 0 0 1 5836 428713683 428719518 0.000000e+00 10778.0
1 TraesCS4D01G259100 chr4D 76.540 1185 228 41 3596 4758 428941829 428940673 2.330000e-168 603.0
2 TraesCS4D01G259100 chr4D 89.565 230 21 1 3031 3257 428942316 428942087 7.400000e-74 289.0
3 TraesCS4D01G259100 chr4B 94.146 2699 91 29 2406 5053 526738375 526735693 0.000000e+00 4047.0
4 TraesCS4D01G259100 chr4B 91.870 1230 52 15 575 1787 526740588 526739390 0.000000e+00 1674.0
5 TraesCS4D01G259100 chr4B 89.241 632 36 15 1773 2402 526739369 526738768 0.000000e+00 761.0
6 TraesCS4D01G259100 chr4B 92.208 462 24 6 106 560 526741029 526740573 1.370000e-180 643.0
7 TraesCS4D01G259100 chr4B 76.227 1182 231 41 3596 4755 526274803 526275956 1.090000e-161 580.0
8 TraesCS4D01G259100 chr4B 85.030 501 44 19 5351 5836 526735469 526734985 1.140000e-131 481.0
9 TraesCS4D01G259100 chr4B 89.565 230 21 1 3031 3257 526274307 526274536 7.400000e-74 289.0
10 TraesCS4D01G259100 chr4B 89.941 169 16 1 5050 5217 35507293 35507461 3.540000e-52 217.0
11 TraesCS4D01G259100 chr4B 90.411 146 8 2 5219 5359 526735690 526735546 2.780000e-43 187.0
12 TraesCS4D01G259100 chr4B 95.652 46 2 0 5659 5704 526735197 526735152 2.260000e-09 75.0
13 TraesCS4D01G259100 chr4A 94.081 2112 86 16 2979 5053 37785883 37783774 0.000000e+00 3171.0
14 TraesCS4D01G259100 chr4A 88.281 2048 105 49 110 2064 37789153 37787148 0.000000e+00 2327.0
15 TraesCS4D01G259100 chr4A 84.816 652 36 21 2305 2915 37786709 37786080 1.080000e-166 597.0
16 TraesCS4D01G259100 chr4A 76.081 1179 232 40 3598 4754 37317488 37318638 2.360000e-158 569.0
17 TraesCS4D01G259100 chr4A 86.943 314 25 9 5351 5661 37783603 37783303 7.240000e-89 339.0
18 TraesCS4D01G259100 chr4A 90.090 222 19 1 3031 3249 37317010 37317231 9.570000e-73 285.0
19 TraesCS4D01G259100 chr4A 91.620 179 14 1 5659 5836 37783337 37783159 4.520000e-61 246.0
20 TraesCS4D01G259100 chr1D 77.014 844 155 33 3838 4663 100662123 100662945 1.150000e-121 448.0
21 TraesCS4D01G259100 chr1D 90.303 165 15 1 5052 5215 220154298 220154134 1.270000e-51 215.0
22 TraesCS4D01G259100 chr1D 87.097 186 20 3 5033 5215 146656260 146656076 2.130000e-49 207.0
23 TraesCS4D01G259100 chr1A 76.887 848 159 31 3838 4668 104921088 104920261 4.150000e-121 446.0
24 TraesCS4D01G259100 chr1A 88.764 178 18 2 5043 5218 570788754 570788931 3.540000e-52 217.0
25 TraesCS4D01G259100 chrUn 75.747 870 188 16 3806 4668 23652895 23652042 3.250000e-112 416.0
26 TraesCS4D01G259100 chr2D 75.772 842 179 19 3838 4668 602451498 602450671 9.110000e-108 401.0
27 TraesCS4D01G259100 chr2A 75.431 871 189 18 3806 4668 776022801 776021948 3.280000e-107 399.0
28 TraesCS4D01G259100 chr2B 75.445 843 182 19 3837 4668 732568429 732567601 2.550000e-103 387.0
29 TraesCS4D01G259100 chr3A 90.533 169 15 1 5049 5216 722287337 722287169 7.610000e-54 222.0
30 TraesCS4D01G259100 chr7D 90.909 165 13 2 5052 5215 221352650 221352487 2.740000e-53 220.0
31 TraesCS4D01G259100 chr6D 88.889 180 17 3 5052 5230 104041326 104041149 9.850000e-53 219.0
32 TraesCS4D01G259100 chr6D 89.881 168 16 1 5049 5215 75461741 75461574 1.270000e-51 215.0
33 TraesCS4D01G259100 chr5D 88.571 175 18 2 5045 5218 559625939 559625766 1.650000e-50 211.0
34 TraesCS4D01G259100 chr7A 87.179 78 10 0 3249 3326 712628309 712628232 8.050000e-14 89.8
35 TraesCS4D01G259100 chr7A 86.842 76 10 0 3251 3326 712490445 712490370 1.040000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G259100 chr4D 428713683 428719518 5835 False 10778.0 10778 100.000000 1 5836 1 chr4D.!!$F1 5835
1 TraesCS4D01G259100 chr4D 428940673 428942316 1643 True 446.0 603 83.052500 3031 4758 2 chr4D.!!$R1 1727
2 TraesCS4D01G259100 chr4B 526734985 526741029 6044 True 1124.0 4047 91.222571 106 5836 7 chr4B.!!$R1 5730
3 TraesCS4D01G259100 chr4B 526274307 526275956 1649 False 434.5 580 82.896000 3031 4755 2 chr4B.!!$F2 1724
4 TraesCS4D01G259100 chr4A 37783159 37789153 5994 True 1336.0 3171 89.148200 110 5836 5 chr4A.!!$R1 5726
5 TraesCS4D01G259100 chr4A 37317010 37318638 1628 False 427.0 569 83.085500 3031 4754 2 chr4A.!!$F1 1723
6 TraesCS4D01G259100 chr1D 100662123 100662945 822 False 448.0 448 77.014000 3838 4663 1 chr1D.!!$F1 825
7 TraesCS4D01G259100 chr1A 104920261 104921088 827 True 446.0 446 76.887000 3838 4668 1 chr1A.!!$R1 830
8 TraesCS4D01G259100 chrUn 23652042 23652895 853 True 416.0 416 75.747000 3806 4668 1 chrUn.!!$R1 862
9 TraesCS4D01G259100 chr2D 602450671 602451498 827 True 401.0 401 75.772000 3838 4668 1 chr2D.!!$R1 830
10 TraesCS4D01G259100 chr2A 776021948 776022801 853 True 399.0 399 75.431000 3806 4668 1 chr2A.!!$R1 862
11 TraesCS4D01G259100 chr2B 732567601 732568429 828 True 387.0 387 75.445000 3837 4668 1 chr2B.!!$R1 831

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
963 1058 0.033109 TCTCCTCCTCGCTCATCCAA 60.033 55.0 0.00 0.00 0.00 3.53 F
1899 2076 0.109086 CAGAGTCACGCCGAACTCAT 60.109 55.0 20.42 8.11 0.00 2.90 F
2431 3294 0.030638 CTTTTCCACTGCACCCAACG 59.969 55.0 0.00 0.00 0.00 4.10 F
3284 4342 0.673333 CTGATTGCCACTGCCACGTA 60.673 55.0 0.00 0.00 36.33 3.57 F
3285 4343 0.953471 TGATTGCCACTGCCACGTAC 60.953 55.0 0.00 0.00 36.33 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2197 2668 0.027194 GTCAGCAGCACGCATGTATG 59.973 55.000 0.00 0.00 46.13 2.39 R
3443 4511 0.329261 CCTTGAGGATGGACCAGCAA 59.671 55.000 12.67 6.85 42.04 3.91 R
4193 5275 0.460284 CGTGCGCCTTCTGGTAGAAT 60.460 55.000 4.18 0.00 33.13 2.40 R
4796 5887 1.080705 GTTGTCGGACTCCCTGTCG 60.081 63.158 9.88 0.00 46.24 4.35 R
4859 5953 1.111116 AACCGTATGGGCGCTAGCTA 61.111 55.000 13.93 0.00 44.37 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.609703 AGTGCCGCAAACCAAACA 58.390 50.000 0.00 0.00 0.00 2.83
18 19 1.437160 AGTGCCGCAAACCAAACAG 59.563 52.632 0.00 0.00 0.00 3.16
19 20 1.034838 AGTGCCGCAAACCAAACAGA 61.035 50.000 0.00 0.00 0.00 3.41
20 21 0.179124 GTGCCGCAAACCAAACAGAA 60.179 50.000 0.00 0.00 0.00 3.02
21 22 0.749649 TGCCGCAAACCAAACAGAAT 59.250 45.000 0.00 0.00 0.00 2.40
22 23 1.957177 TGCCGCAAACCAAACAGAATA 59.043 42.857 0.00 0.00 0.00 1.75
23 24 2.362397 TGCCGCAAACCAAACAGAATAA 59.638 40.909 0.00 0.00 0.00 1.40
24 25 3.181475 TGCCGCAAACCAAACAGAATAAA 60.181 39.130 0.00 0.00 0.00 1.40
25 26 3.993736 GCCGCAAACCAAACAGAATAAAT 59.006 39.130 0.00 0.00 0.00 1.40
26 27 5.164954 GCCGCAAACCAAACAGAATAAATA 58.835 37.500 0.00 0.00 0.00 1.40
27 28 5.810074 GCCGCAAACCAAACAGAATAAATAT 59.190 36.000 0.00 0.00 0.00 1.28
28 29 6.975772 GCCGCAAACCAAACAGAATAAATATA 59.024 34.615 0.00 0.00 0.00 0.86
29 30 7.489757 GCCGCAAACCAAACAGAATAAATATAA 59.510 33.333 0.00 0.00 0.00 0.98
30 31 9.360093 CCGCAAACCAAACAGAATAAATATAAA 57.640 29.630 0.00 0.00 0.00 1.40
75 76 8.470040 AAAAATACATGTGTATTAGTCGACGT 57.530 30.769 16.34 3.12 46.98 4.34
76 77 8.470040 AAAATACATGTGTATTAGTCGACGTT 57.530 30.769 16.34 1.45 46.98 3.99
77 78 9.571810 AAAATACATGTGTATTAGTCGACGTTA 57.428 29.630 16.34 0.00 46.98 3.18
78 79 9.571810 AAATACATGTGTATTAGTCGACGTTAA 57.428 29.630 16.34 4.78 46.98 2.01
79 80 9.740239 AATACATGTGTATTAGTCGACGTTAAT 57.260 29.630 14.88 11.97 46.15 1.40
81 82 8.778141 ACATGTGTATTAGTCGACGTTAATAG 57.222 34.615 10.46 4.97 0.00 1.73
82 83 8.400947 ACATGTGTATTAGTCGACGTTAATAGT 58.599 33.333 10.46 5.52 0.00 2.12
83 84 9.868389 CATGTGTATTAGTCGACGTTAATAGTA 57.132 33.333 10.46 4.20 0.00 1.82
85 86 9.098355 TGTGTATTAGTCGACGTTAATAGTAGT 57.902 33.333 10.46 0.00 0.00 2.73
86 87 9.922305 GTGTATTAGTCGACGTTAATAGTAGTT 57.078 33.333 10.46 0.00 0.00 2.24
148 149 6.088173 ACATGTCAACAACAAATGATCATCG 58.912 36.000 9.06 6.11 42.37 3.84
187 191 2.919859 CAGTCATGCTCTAAGTGACACG 59.080 50.000 0.00 0.00 43.51 4.49
270 274 2.254152 TTATCTCTGGCCTCTGGTGT 57.746 50.000 3.32 0.00 0.00 4.16
298 302 2.872557 GTGTGTGAGCGCATGCAT 59.127 55.556 19.57 5.12 46.23 3.96
301 305 2.825387 TGTGAGCGCATGCATCCC 60.825 61.111 19.57 6.96 46.23 3.85
312 316 3.494332 GCATGCATCCCCTTTCTAATCT 58.506 45.455 14.21 0.00 0.00 2.40
326 330 6.148811 CCTTTCTAATCTGAAAACCGTTGCTA 59.851 38.462 0.00 0.00 35.79 3.49
331 335 5.957842 ATCTGAAAACCGTTGCTAATCAA 57.042 34.783 0.00 0.00 0.00 2.57
389 399 3.477899 AAGATTAAGCAGCAAAGCGAC 57.522 42.857 0.00 0.00 40.15 5.19
390 400 1.740025 AGATTAAGCAGCAAAGCGACC 59.260 47.619 0.00 0.00 40.15 4.79
512 534 1.675641 CGAGCCAGGTCAAAAGGGG 60.676 63.158 0.00 0.00 0.00 4.79
553 575 3.551407 TAGGGCGCCACACACACA 61.551 61.111 30.85 0.00 0.00 3.72
554 576 3.818121 TAGGGCGCCACACACACAC 62.818 63.158 30.85 7.16 0.00 3.82
556 578 4.250431 GGCGCCACACACACACAC 62.250 66.667 24.80 0.00 0.00 3.82
557 579 3.504273 GCGCCACACACACACACA 61.504 61.111 0.00 0.00 0.00 3.72
558 580 2.403186 CGCCACACACACACACAC 59.597 61.111 0.00 0.00 0.00 3.82
559 581 2.394563 CGCCACACACACACACACA 61.395 57.895 0.00 0.00 0.00 3.72
560 582 1.136565 GCCACACACACACACACAC 59.863 57.895 0.00 0.00 0.00 3.82
561 583 1.581727 GCCACACACACACACACACA 61.582 55.000 0.00 0.00 0.00 3.72
562 584 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
563 585 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
564 586 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
565 587 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
566 588 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
567 589 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
568 590 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
569 591 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
570 592 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
571 593 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
572 594 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
573 595 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
574 596 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
575 597 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
576 598 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
577 599 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
578 600 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
579 601 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
580 602 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
581 603 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
582 604 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
623 689 0.394352 CCAGGGAGCCGTAGCAAATT 60.394 55.000 0.00 0.00 43.56 1.82
624 690 1.134220 CCAGGGAGCCGTAGCAAATTA 60.134 52.381 0.00 0.00 43.56 1.40
625 691 2.213499 CAGGGAGCCGTAGCAAATTAG 58.787 52.381 0.00 0.00 43.56 1.73
755 839 3.039588 GAGCAACGACGCGGGAAA 61.040 61.111 12.47 0.00 36.85 3.13
778 862 0.034380 TGTGCTACGCCCTCTCTAGT 60.034 55.000 0.00 0.00 0.00 2.57
812 900 4.478371 GTAAACCCGGCCCCCTCG 62.478 72.222 0.00 0.00 0.00 4.63
842 934 2.159366 CGCGCCTATATAAGCAGCTAGT 60.159 50.000 0.00 0.00 0.00 2.57
962 1057 0.467106 CTCTCCTCCTCGCTCATCCA 60.467 60.000 0.00 0.00 0.00 3.41
963 1058 0.033109 TCTCCTCCTCGCTCATCCAA 60.033 55.000 0.00 0.00 0.00 3.53
975 1070 2.424956 GCTCATCCAACTCAAACCATCC 59.575 50.000 0.00 0.00 0.00 3.51
987 1088 1.488705 AACCATCCTGGCCTTCGTCA 61.489 55.000 3.32 0.00 42.67 4.35
995 1096 0.828022 TGGCCTTCGTCAATCGGTAT 59.172 50.000 3.32 0.00 40.32 2.73
1009 1114 5.182190 TCAATCGGTATAGAGATGAGAGCAC 59.818 44.000 0.00 0.00 0.00 4.40
1171 1280 4.323868 GCCTTGATTAACCACTCTTCCTCT 60.324 45.833 0.00 0.00 0.00 3.69
1173 1282 5.645497 CCTTGATTAACCACTCTTCCTCTTG 59.355 44.000 0.00 0.00 0.00 3.02
1189 1298 2.192608 CTTGCTTTCTCCACGCAGCC 62.193 60.000 0.00 0.00 34.82 4.85
1304 1419 1.352352 AGCATATATTTCTGGCCGGCT 59.648 47.619 28.56 7.78 0.00 5.52
1425 1544 1.658102 CATGCGTGTTGTGTGCACC 60.658 57.895 15.69 6.37 42.11 5.01
1429 1548 3.209097 GTGTTGTGTGCACCGGCT 61.209 61.111 15.69 0.00 41.91 5.52
1572 1695 1.136500 GCGTTGGTACCTAGCTTAGCT 59.864 52.381 12.67 12.67 43.41 3.32
1653 1779 4.767928 AGAAAGGTCGTGACTAATGACTCT 59.232 41.667 0.00 0.00 43.35 3.24
1667 1793 0.249657 GACTCTGCCCCATCATCGAC 60.250 60.000 0.00 0.00 0.00 4.20
1805 1970 9.462606 AACCAAACAAATATCTAGGAAGTTAGG 57.537 33.333 0.00 0.00 0.00 2.69
1830 1995 2.433436 GGAGTTAAAGCCGTGTGGAAT 58.567 47.619 0.00 0.00 37.49 3.01
1836 2001 1.742761 AAGCCGTGTGGAATGATGAG 58.257 50.000 0.00 0.00 37.49 2.90
1896 2073 0.522180 CTACAGAGTCACGCCGAACT 59.478 55.000 0.00 0.00 0.00 3.01
1897 2074 0.520404 TACAGAGTCACGCCGAACTC 59.480 55.000 13.79 13.79 0.00 3.01
1899 2076 0.109086 CAGAGTCACGCCGAACTCAT 60.109 55.000 20.42 8.11 0.00 2.90
1900 2077 0.171455 AGAGTCACGCCGAACTCATC 59.829 55.000 20.42 2.13 0.00 2.92
1910 2087 2.959275 GAACTCATCGGCGTACCAG 58.041 57.895 6.85 1.48 34.57 4.00
1997 2174 2.801679 CGTTTTGACCCTTGCTACGTTA 59.198 45.455 0.00 0.00 0.00 3.18
2004 2181 1.940613 CCCTTGCTACGTTATTCCAGC 59.059 52.381 0.00 0.00 34.56 4.85
2013 2191 2.268298 CGTTATTCCAGCGTGCTAGTT 58.732 47.619 0.00 0.00 0.00 2.24
2095 2273 1.497991 GTAGCAGCGTCTGTCAACAA 58.502 50.000 8.32 0.00 33.43 2.83
2145 2616 1.280133 TGACAGGAATTCCAGCTCCAG 59.720 52.381 26.22 9.01 38.89 3.86
2152 2623 2.706339 ATTCCAGCTCCAGCAACTAG 57.294 50.000 0.48 0.00 45.16 2.57
2157 2628 3.009473 TCCAGCTCCAGCAACTAGAAAAT 59.991 43.478 0.00 0.00 45.16 1.82
2175 2646 0.518636 ATTGCACAGATCACACGCAC 59.481 50.000 0.00 0.00 31.10 5.34
2177 2648 1.223417 TGCACAGATCACACGCACTG 61.223 55.000 0.00 0.00 36.58 3.66
2178 2649 1.494628 CACAGATCACACGCACTGC 59.505 57.895 0.00 0.00 34.25 4.40
2179 2650 1.069596 ACAGATCACACGCACTGCA 59.930 52.632 1.11 0.00 34.25 4.41
2180 2651 1.224069 ACAGATCACACGCACTGCAC 61.224 55.000 1.11 0.00 34.25 4.57
2181 2652 2.023771 AGATCACACGCACTGCACG 61.024 57.895 1.11 0.00 0.00 5.34
2194 2665 2.863401 CTGCACGCAGTAGTATACCA 57.137 50.000 10.94 0.00 44.47 3.25
2195 2666 3.371102 CTGCACGCAGTAGTATACCAT 57.629 47.619 10.94 0.00 44.47 3.55
2196 2667 3.717707 CTGCACGCAGTAGTATACCATT 58.282 45.455 10.94 0.00 44.47 3.16
2197 2668 3.713288 TGCACGCAGTAGTATACCATTC 58.287 45.455 0.00 0.00 44.47 2.67
2198 2669 3.131400 TGCACGCAGTAGTATACCATTCA 59.869 43.478 0.00 0.00 44.47 2.57
2199 2670 4.202212 TGCACGCAGTAGTATACCATTCAT 60.202 41.667 0.00 0.00 44.47 2.57
2200 2671 5.010213 TGCACGCAGTAGTATACCATTCATA 59.990 40.000 0.00 0.00 44.47 2.15
2201 2672 5.345202 GCACGCAGTAGTATACCATTCATAC 59.655 44.000 0.00 0.00 44.47 2.39
2202 2673 6.443792 CACGCAGTAGTATACCATTCATACA 58.556 40.000 0.00 0.00 44.47 2.29
2203 2674 7.090808 CACGCAGTAGTATACCATTCATACAT 58.909 38.462 0.00 0.00 44.47 2.29
2204 2675 7.062255 CACGCAGTAGTATACCATTCATACATG 59.938 40.741 0.00 0.00 44.47 3.21
2205 2676 6.035005 CGCAGTAGTATACCATTCATACATGC 59.965 42.308 0.00 5.90 44.47 4.06
2206 2677 6.035005 GCAGTAGTATACCATTCATACATGCG 59.965 42.308 0.00 0.00 44.47 4.73
2207 2678 7.090808 CAGTAGTATACCATTCATACATGCGT 58.909 38.462 0.00 0.00 44.47 5.24
2208 2679 7.062255 CAGTAGTATACCATTCATACATGCGTG 59.938 40.741 3.82 3.82 44.47 5.34
2209 2680 4.690748 AGTATACCATTCATACATGCGTGC 59.309 41.667 5.64 0.00 32.35 5.34
2225 2696 0.041839 GTGCTGCTGACTTGTTCACG 60.042 55.000 0.00 0.00 0.00 4.35
2227 2698 0.937304 GCTGCTGACTTGTTCACGAA 59.063 50.000 0.00 0.00 0.00 3.85
2256 2727 5.861727 TCACTATGAATGATCATGGAGTGG 58.138 41.667 24.67 12.58 45.00 4.00
2297 2768 3.070018 GTGTGATCAGAGTTGAGTTGGG 58.930 50.000 0.00 0.00 36.61 4.12
2298 2769 2.972021 TGTGATCAGAGTTGAGTTGGGA 59.028 45.455 0.00 0.00 36.61 4.37
2299 2770 3.584406 TGTGATCAGAGTTGAGTTGGGAT 59.416 43.478 0.00 0.00 36.61 3.85
2300 2771 4.187694 GTGATCAGAGTTGAGTTGGGATC 58.812 47.826 0.00 0.00 36.61 3.36
2361 2835 2.203877 AGGGGAGGGCGTGTGTAA 60.204 61.111 0.00 0.00 0.00 2.41
2431 3294 0.030638 CTTTTCCACTGCACCCAACG 59.969 55.000 0.00 0.00 0.00 4.10
2438 3301 4.172625 TGCACCCAACGCAGAAAT 57.827 50.000 0.00 0.00 33.55 2.17
2441 3304 1.165270 GCACCCAACGCAGAAATACT 58.835 50.000 0.00 0.00 0.00 2.12
2505 3375 0.893727 GCCGGTTGGTTGGTGAAGAT 60.894 55.000 1.90 0.00 37.67 2.40
2558 3440 1.300963 GTTCCATGCCAGGAGCTCA 59.699 57.895 17.19 0.00 44.23 4.26
2683 3567 1.946768 TGGACTTTTTCAGGCAAGTCG 59.053 47.619 8.12 0.00 46.79 4.18
2712 3596 1.064611 TCTTCTAGGTCACTAGCGCCT 60.065 52.381 2.29 5.78 45.15 5.52
3177 4235 1.739196 GGGGAACAAGTACGCCGTC 60.739 63.158 0.00 0.00 0.00 4.79
3279 4337 1.404391 CTGAATCTGATTGCCACTGCC 59.596 52.381 7.78 0.00 36.33 4.85
3280 4338 1.272037 TGAATCTGATTGCCACTGCCA 60.272 47.619 7.78 0.00 36.33 4.92
3282 4340 1.028330 ATCTGATTGCCACTGCCACG 61.028 55.000 0.00 0.00 36.33 4.94
3283 4341 1.968017 CTGATTGCCACTGCCACGT 60.968 57.895 0.00 0.00 36.33 4.49
3284 4342 0.673333 CTGATTGCCACTGCCACGTA 60.673 55.000 0.00 0.00 36.33 3.57
3285 4343 0.953471 TGATTGCCACTGCCACGTAC 60.953 55.000 0.00 0.00 36.33 3.67
3286 4344 0.953471 GATTGCCACTGCCACGTACA 60.953 55.000 0.00 0.00 36.33 2.90
3443 4511 4.353437 GTCGACGCCAAGTCCGGT 62.353 66.667 0.00 0.00 46.92 5.28
3530 4598 3.632145 AGGTAAACACAAACCTGAAGCAG 59.368 43.478 0.00 0.00 44.53 4.24
3533 4601 3.508744 AACACAAACCTGAAGCAGTTG 57.491 42.857 0.00 0.00 0.00 3.16
3537 4605 4.461081 ACACAAACCTGAAGCAGTTGTTTA 59.539 37.500 0.00 0.00 31.43 2.01
3540 4608 6.367422 CACAAACCTGAAGCAGTTGTTTAAAA 59.633 34.615 0.00 0.00 31.43 1.52
3541 4609 7.064490 CACAAACCTGAAGCAGTTGTTTAAAAT 59.936 33.333 0.00 0.00 31.43 1.82
3543 4611 5.049828 ACCTGAAGCAGTTGTTTAAAATGC 58.950 37.500 2.52 2.52 37.15 3.56
3547 4615 7.270757 TGAAGCAGTTGTTTAAAATGCTCTA 57.729 32.000 12.70 3.69 46.02 2.43
3549 4617 6.259550 AGCAGTTGTTTAAAATGCTCTAGG 57.740 37.500 7.16 0.00 43.46 3.02
4796 5887 2.813042 GTGCAGAGCCTCAGCGTC 60.813 66.667 4.56 0.00 46.67 5.19
4848 5942 7.871973 CCATACACGTCTAGTCTAGTAGTATGT 59.128 40.741 23.21 16.97 36.31 2.29
4849 5943 8.914654 CATACACGTCTAGTCTAGTAGTATGTC 58.085 40.741 20.51 3.90 34.47 3.06
4851 5945 6.979817 ACACGTCTAGTCTAGTAGTATGTCTG 59.020 42.308 6.77 0.00 0.00 3.51
4859 5953 2.736347 AGTAGTATGTCTGGGCGTCTT 58.264 47.619 0.00 0.00 0.00 3.01
4878 5989 1.111116 TAGCTAGCGCCCATACGGTT 61.111 55.000 9.55 0.00 41.78 4.44
4902 6013 3.801307 TCAGATATGCCTGCCATTGAT 57.199 42.857 0.00 0.00 35.34 2.57
4903 6014 4.108501 TCAGATATGCCTGCCATTGATT 57.891 40.909 0.00 0.00 35.34 2.57
4904 6015 3.824443 TCAGATATGCCTGCCATTGATTG 59.176 43.478 0.00 0.00 35.34 2.67
4905 6016 3.572682 CAGATATGCCTGCCATTGATTGT 59.427 43.478 0.00 0.00 35.34 2.71
4906 6017 4.038763 CAGATATGCCTGCCATTGATTGTT 59.961 41.667 0.00 0.00 35.34 2.83
4907 6018 2.684001 ATGCCTGCCATTGATTGTTG 57.316 45.000 0.00 0.00 0.00 3.33
4929 6046 8.409371 TGTTGTTGTTGATTTAGAGCATTGTTA 58.591 29.630 0.00 0.00 0.00 2.41
4992 6109 3.144120 CTGGAGAGGCGGTGGATCG 62.144 68.421 0.00 0.00 0.00 3.69
5053 6171 9.194271 AGAAGTTCGATTTGTTCTTCTTACTAC 57.806 33.333 0.00 0.00 40.93 2.73
5054 6172 9.194271 GAAGTTCGATTTGTTCTTCTTACTACT 57.806 33.333 0.00 0.00 33.86 2.57
5056 6174 7.813627 AGTTCGATTTGTTCTTCTTACTACTCC 59.186 37.037 0.00 0.00 0.00 3.85
5057 6175 6.628185 TCGATTTGTTCTTCTTACTACTCCC 58.372 40.000 0.00 0.00 0.00 4.30
5058 6176 5.811100 CGATTTGTTCTTCTTACTACTCCCC 59.189 44.000 0.00 0.00 0.00 4.81
5059 6177 5.494390 TTTGTTCTTCTTACTACTCCCCC 57.506 43.478 0.00 0.00 0.00 5.40
5079 6197 6.720217 CCCCCTATCCCAAATATAACTCTT 57.280 41.667 0.00 0.00 0.00 2.85
5080 6198 7.103745 CCCCCTATCCCAAATATAACTCTTT 57.896 40.000 0.00 0.00 0.00 2.52
5081 6199 7.175797 CCCCCTATCCCAAATATAACTCTTTC 58.824 42.308 0.00 0.00 0.00 2.62
5082 6200 7.175797 CCCCTATCCCAAATATAACTCTTTCC 58.824 42.308 0.00 0.00 0.00 3.13
5083 6201 7.202279 CCCCTATCCCAAATATAACTCTTTCCA 60.202 40.741 0.00 0.00 0.00 3.53
5084 6202 7.885399 CCCTATCCCAAATATAACTCTTTCCAG 59.115 40.741 0.00 0.00 0.00 3.86
5085 6203 8.660435 CCTATCCCAAATATAACTCTTTCCAGA 58.340 37.037 0.00 0.00 0.00 3.86
5099 6217 6.624352 TCTTTCCAGAGATTTCAACAAGTG 57.376 37.500 0.00 0.00 0.00 3.16
5100 6218 6.356556 TCTTTCCAGAGATTTCAACAAGTGA 58.643 36.000 0.00 0.00 0.00 3.41
5101 6219 6.260936 TCTTTCCAGAGATTTCAACAAGTGAC 59.739 38.462 0.00 0.00 35.39 3.67
5102 6220 5.296151 TCCAGAGATTTCAACAAGTGACT 57.704 39.130 0.00 0.00 35.39 3.41
5103 6221 6.419484 TCCAGAGATTTCAACAAGTGACTA 57.581 37.500 0.00 0.00 35.39 2.59
5104 6222 6.223852 TCCAGAGATTTCAACAAGTGACTAC 58.776 40.000 0.00 0.00 35.39 2.73
5105 6223 5.991606 CCAGAGATTTCAACAAGTGACTACA 59.008 40.000 0.00 0.00 35.39 2.74
5106 6224 6.652481 CCAGAGATTTCAACAAGTGACTACAT 59.348 38.462 0.00 0.00 35.39 2.29
5107 6225 7.819415 CCAGAGATTTCAACAAGTGACTACATA 59.181 37.037 0.00 0.00 35.39 2.29
5108 6226 8.651588 CAGAGATTTCAACAAGTGACTACATAC 58.348 37.037 0.00 0.00 35.39 2.39
5109 6227 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
5110 6228 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
5111 6229 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
5112 6230 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
5113 6231 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
5114 6232 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
5115 6233 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
5116 6234 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
5117 6235 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
5118 6236 4.243270 AGTGACTACATACGGAGCAAAAC 58.757 43.478 0.00 0.00 0.00 2.43
5119 6237 3.060363 GTGACTACATACGGAGCAAAACG 59.940 47.826 0.00 0.00 0.00 3.60
5120 6238 3.057386 TGACTACATACGGAGCAAAACGA 60.057 43.478 0.00 0.00 0.00 3.85
5121 6239 3.508762 ACTACATACGGAGCAAAACGAG 58.491 45.455 0.00 0.00 0.00 4.18
5122 6240 2.450609 ACATACGGAGCAAAACGAGT 57.549 45.000 0.00 0.00 0.00 4.18
5123 6241 2.066262 ACATACGGAGCAAAACGAGTG 58.934 47.619 0.00 0.00 0.00 3.51
5124 6242 2.288579 ACATACGGAGCAAAACGAGTGA 60.289 45.455 0.00 0.00 0.00 3.41
5125 6243 2.512485 TACGGAGCAAAACGAGTGAA 57.488 45.000 0.00 0.00 0.00 3.18
5126 6244 1.878953 ACGGAGCAAAACGAGTGAAT 58.121 45.000 0.00 0.00 0.00 2.57
5127 6245 1.798813 ACGGAGCAAAACGAGTGAATC 59.201 47.619 0.00 0.00 0.00 2.52
5128 6246 2.069273 CGGAGCAAAACGAGTGAATCT 58.931 47.619 0.00 0.00 0.00 2.40
5129 6247 3.250744 CGGAGCAAAACGAGTGAATCTA 58.749 45.455 0.00 0.00 0.00 1.98
5130 6248 3.060895 CGGAGCAAAACGAGTGAATCTAC 59.939 47.826 0.00 0.00 0.00 2.59
5131 6249 3.060895 GGAGCAAAACGAGTGAATCTACG 59.939 47.826 0.00 0.00 0.00 3.51
5132 6250 2.412089 AGCAAAACGAGTGAATCTACGC 59.588 45.455 0.00 0.00 0.00 4.42
5133 6251 2.412089 GCAAAACGAGTGAATCTACGCT 59.588 45.455 0.00 0.00 0.00 5.07
5134 6252 3.120649 GCAAAACGAGTGAATCTACGCTT 60.121 43.478 0.00 0.00 0.00 4.68
5135 6253 4.610680 GCAAAACGAGTGAATCTACGCTTT 60.611 41.667 0.00 0.00 0.00 3.51
5136 6254 5.389098 GCAAAACGAGTGAATCTACGCTTTA 60.389 40.000 0.00 0.00 0.00 1.85
5137 6255 6.586751 CAAAACGAGTGAATCTACGCTTTAA 58.413 36.000 0.00 0.00 0.00 1.52
5138 6256 6.774354 AAACGAGTGAATCTACGCTTTAAA 57.226 33.333 0.00 0.00 0.00 1.52
5139 6257 6.774354 AACGAGTGAATCTACGCTTTAAAA 57.226 33.333 0.00 0.00 0.00 1.52
5140 6258 6.963049 ACGAGTGAATCTACGCTTTAAAAT 57.037 33.333 0.00 0.00 0.00 1.82
5141 6259 8.470040 AACGAGTGAATCTACGCTTTAAAATA 57.530 30.769 0.00 0.00 0.00 1.40
5142 6260 8.644318 ACGAGTGAATCTACGCTTTAAAATAT 57.356 30.769 0.00 0.00 0.00 1.28
5143 6261 8.540492 ACGAGTGAATCTACGCTTTAAAATATG 58.460 33.333 0.00 0.00 0.00 1.78
5144 6262 8.540492 CGAGTGAATCTACGCTTTAAAATATGT 58.460 33.333 0.00 0.00 0.00 2.29
5164 6282 9.772973 AATATGTTACATATATCCGTGTGTTGT 57.227 29.630 17.00 0.00 0.00 3.32
5167 6285 9.772973 ATGTTACATATATCCGTGTGTTGTAAT 57.227 29.630 0.00 0.00 32.60 1.89
5168 6286 9.251792 TGTTACATATATCCGTGTGTTGTAATC 57.748 33.333 0.00 0.00 32.60 1.75
5169 6287 8.706035 GTTACATATATCCGTGTGTTGTAATCC 58.294 37.037 0.00 0.00 32.60 3.01
5170 6288 6.822442 ACATATATCCGTGTGTTGTAATCCA 58.178 36.000 0.00 0.00 0.00 3.41
5171 6289 7.450074 ACATATATCCGTGTGTTGTAATCCAT 58.550 34.615 0.00 0.00 0.00 3.41
5172 6290 7.936847 ACATATATCCGTGTGTTGTAATCCATT 59.063 33.333 0.00 0.00 0.00 3.16
5173 6291 8.783093 CATATATCCGTGTGTTGTAATCCATTT 58.217 33.333 0.00 0.00 0.00 2.32
5174 6292 4.757799 TCCGTGTGTTGTAATCCATTTG 57.242 40.909 0.00 0.00 0.00 2.32
5175 6293 4.390264 TCCGTGTGTTGTAATCCATTTGA 58.610 39.130 0.00 0.00 0.00 2.69
5176 6294 4.822350 TCCGTGTGTTGTAATCCATTTGAA 59.178 37.500 0.00 0.00 0.00 2.69
5177 6295 5.299531 TCCGTGTGTTGTAATCCATTTGAAA 59.700 36.000 0.00 0.00 0.00 2.69
5178 6296 6.015856 TCCGTGTGTTGTAATCCATTTGAAAT 60.016 34.615 0.00 0.00 0.00 2.17
5179 6297 6.089283 CCGTGTGTTGTAATCCATTTGAAATG 59.911 38.462 10.84 10.84 0.00 2.32
5180 6298 6.640499 CGTGTGTTGTAATCCATTTGAAATGT 59.360 34.615 15.93 1.43 0.00 2.71
5181 6299 7.148983 CGTGTGTTGTAATCCATTTGAAATGTC 60.149 37.037 15.93 3.21 0.00 3.06
5182 6300 7.867403 GTGTGTTGTAATCCATTTGAAATGTCT 59.133 33.333 15.93 3.58 0.00 3.41
5183 6301 9.072375 TGTGTTGTAATCCATTTGAAATGTCTA 57.928 29.630 15.93 2.79 0.00 2.59
5184 6302 9.906660 GTGTTGTAATCCATTTGAAATGTCTAA 57.093 29.630 15.93 0.53 0.00 2.10
5212 6330 9.907229 AAAACTTATATTTAGGAACAGAGGGAG 57.093 33.333 0.00 0.00 0.00 4.30
5213 6331 8.625467 AACTTATATTTAGGAACAGAGGGAGT 57.375 34.615 0.00 0.00 0.00 3.85
5214 6332 9.725206 AACTTATATTTAGGAACAGAGGGAGTA 57.275 33.333 0.00 0.00 0.00 2.59
5215 6333 9.145442 ACTTATATTTAGGAACAGAGGGAGTAC 57.855 37.037 0.00 0.00 0.00 2.73
5216 6334 9.144298 CTTATATTTAGGAACAGAGGGAGTACA 57.856 37.037 0.00 0.00 0.00 2.90
5217 6335 7.989947 ATATTTAGGAACAGAGGGAGTACAA 57.010 36.000 0.00 0.00 0.00 2.41
5304 6427 5.222027 TGGTTTAGTTCATGGAGATTCACCA 60.222 40.000 5.24 5.24 41.83 4.17
5319 6442 1.879380 TCACCAAAGGCTGAACAATCG 59.121 47.619 0.00 0.00 0.00 3.34
5323 6446 2.035832 CCAAAGGCTGAACAATCGGTTT 59.964 45.455 0.00 0.00 40.63 3.27
5373 6581 5.001232 AGTACATCCAGCAAACAAATACGT 58.999 37.500 0.00 0.00 0.00 3.57
5374 6582 6.167685 AGTACATCCAGCAAACAAATACGTA 58.832 36.000 0.00 0.00 0.00 3.57
5375 6583 5.291293 ACATCCAGCAAACAAATACGTAC 57.709 39.130 0.00 0.00 0.00 3.67
5376 6584 4.142988 ACATCCAGCAAACAAATACGTACG 60.143 41.667 15.01 15.01 0.00 3.67
5392 6600 0.103572 TACGCAATTAGACGCCCCTC 59.896 55.000 0.00 0.00 0.00 4.30
5394 6602 1.154205 CGCAATTAGACGCCCCTCTG 61.154 60.000 0.00 0.00 0.00 3.35
5450 6660 2.304180 CACATCCTCTTGTTCTGGACCT 59.696 50.000 0.00 0.00 32.16 3.85
5453 6663 5.363868 CACATCCTCTTGTTCTGGACCTATA 59.636 44.000 0.00 0.00 32.16 1.31
5455 6665 6.042552 ACATCCTCTTGTTCTGGACCTATATG 59.957 42.308 0.00 0.00 32.16 1.78
5485 6700 1.394917 GACACAGCATTCATCCACGTC 59.605 52.381 0.00 0.00 0.00 4.34
5487 6702 1.129251 CACAGCATTCATCCACGTCAC 59.871 52.381 0.00 0.00 0.00 3.67
5522 6737 2.358898 CACTAGAAAATCGCATTGGGGG 59.641 50.000 0.00 0.00 0.00 5.40
5567 6782 5.521735 GCTACCATCAACACATCTAGTCTTG 59.478 44.000 0.00 0.00 0.00 3.02
5591 6806 5.308014 AGCATTCAAGAAATTTCAAACCCC 58.692 37.500 19.99 3.32 0.00 4.95
5661 6876 7.598493 ACATGTGCTTAAATTGTTCAACCATAC 59.402 33.333 0.00 0.00 0.00 2.39
5662 6877 7.043961 TGTGCTTAAATTGTTCAACCATACA 57.956 32.000 0.00 0.00 0.00 2.29
5664 6879 8.797438 TGTGCTTAAATTGTTCAACCATACATA 58.203 29.630 0.00 0.00 0.00 2.29
5665 6880 9.072294 GTGCTTAAATTGTTCAACCATACATAC 57.928 33.333 0.00 0.00 0.00 2.39
5666 6881 9.019656 TGCTTAAATTGTTCAACCATACATACT 57.980 29.630 0.00 0.00 0.00 2.12
5671 6886 8.506168 AATTGTTCAACCATACATACTACAGG 57.494 34.615 0.00 0.00 0.00 4.00
5672 6887 5.984725 TGTTCAACCATACATACTACAGGG 58.015 41.667 0.00 0.00 0.00 4.45
5673 6888 5.104693 TGTTCAACCATACATACTACAGGGG 60.105 44.000 0.00 0.00 0.00 4.79
5674 6889 3.389983 TCAACCATACATACTACAGGGGC 59.610 47.826 0.00 0.00 0.00 5.80
5676 6891 3.665443 ACCATACATACTACAGGGGCTT 58.335 45.455 0.00 0.00 0.00 4.35
5677 6892 4.823107 ACCATACATACTACAGGGGCTTA 58.177 43.478 0.00 0.00 0.00 3.09
5678 6893 5.221303 ACCATACATACTACAGGGGCTTAA 58.779 41.667 0.00 0.00 0.00 1.85
5679 6894 5.668535 ACCATACATACTACAGGGGCTTAAA 59.331 40.000 0.00 0.00 0.00 1.52
5680 6895 6.331837 ACCATACATACTACAGGGGCTTAAAT 59.668 38.462 0.00 0.00 0.00 1.40
5681 6896 7.147195 ACCATACATACTACAGGGGCTTAAATT 60.147 37.037 0.00 0.00 0.00 1.82
5682 6897 7.174946 CCATACATACTACAGGGGCTTAAATTG 59.825 40.741 0.00 0.00 0.00 2.32
5683 6898 6.074698 ACATACTACAGGGGCTTAAATTGT 57.925 37.500 0.00 0.00 0.00 2.71
5685 6900 6.602009 ACATACTACAGGGGCTTAAATTGTTC 59.398 38.462 0.00 0.00 0.00 3.18
5687 6902 5.390387 ACTACAGGGGCTTAAATTGTTCAA 58.610 37.500 0.00 0.00 0.00 2.69
5688 6903 4.600692 ACAGGGGCTTAAATTGTTCAAC 57.399 40.909 0.00 0.00 0.00 3.18
5689 6904 3.323691 ACAGGGGCTTAAATTGTTCAACC 59.676 43.478 0.00 0.00 0.00 3.77
5744 6961 3.691609 AGTGAATCGCCTCCAAGAATTTC 59.308 43.478 0.00 0.00 0.00 2.17
5748 6965 1.429423 GCCTCCAAGAATTTCCGCG 59.571 57.895 0.00 0.00 0.00 6.46
5833 7052 5.998454 AAGATGCTGTTACATGCTCATAC 57.002 39.130 0.00 0.00 0.00 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.034838 TCTGTTTGGTTTGCGGCACT 61.035 50.000 0.05 0.00 0.00 4.40
1 2 0.179124 TTCTGTTTGGTTTGCGGCAC 60.179 50.000 0.05 0.00 0.00 5.01
2 3 0.749649 ATTCTGTTTGGTTTGCGGCA 59.250 45.000 0.00 0.00 0.00 5.69
3 4 2.715737 TATTCTGTTTGGTTTGCGGC 57.284 45.000 0.00 0.00 0.00 6.53
4 5 8.918961 TTATATTTATTCTGTTTGGTTTGCGG 57.081 30.769 0.00 0.00 0.00 5.69
50 51 8.470040 ACGTCGACTAATACACATGTATTTTT 57.530 30.769 19.53 9.26 45.90 1.94
51 52 8.470040 AACGTCGACTAATACACATGTATTTT 57.530 30.769 19.53 9.55 45.90 1.82
52 53 9.571810 TTAACGTCGACTAATACACATGTATTT 57.428 29.630 19.53 5.78 45.90 1.40
55 56 9.868389 CTATTAACGTCGACTAATACACATGTA 57.132 33.333 14.70 0.00 34.67 2.29
56 57 8.400947 ACTATTAACGTCGACTAATACACATGT 58.599 33.333 14.70 7.15 0.00 3.21
57 58 8.778141 ACTATTAACGTCGACTAATACACATG 57.222 34.615 14.70 6.61 0.00 3.21
59 60 9.098355 ACTACTATTAACGTCGACTAATACACA 57.902 33.333 14.70 2.22 0.00 3.72
60 61 9.922305 AACTACTATTAACGTCGACTAATACAC 57.078 33.333 14.70 0.00 0.00 2.90
119 120 8.574737 TGATCATTTGTTGTTGACATGTCATAA 58.425 29.630 28.32 21.97 39.64 1.90
187 191 2.125106 CCACCGCCCTAGCAAGAC 60.125 66.667 0.00 0.00 39.83 3.01
298 302 4.042435 ACGGTTTTCAGATTAGAAAGGGGA 59.958 41.667 0.00 0.00 38.60 4.81
301 305 5.048713 AGCAACGGTTTTCAGATTAGAAAGG 60.049 40.000 0.00 0.00 38.60 3.11
326 330 5.574188 AGAGGTGGAAAATAGTGCTTGATT 58.426 37.500 0.00 0.00 0.00 2.57
331 335 5.700402 ACATAGAGGTGGAAAATAGTGCT 57.300 39.130 0.00 0.00 0.00 4.40
389 399 1.153086 CTGATTTGGCCGGAGAGGG 60.153 63.158 5.05 0.00 41.48 4.30
390 400 0.462759 GTCTGATTTGGCCGGAGAGG 60.463 60.000 5.05 0.00 44.97 3.69
445 455 2.035576 CACTCATCGATCTGGCTCATCA 59.964 50.000 0.00 0.00 0.00 3.07
447 457 1.343789 CCACTCATCGATCTGGCTCAT 59.656 52.381 0.00 0.00 0.00 2.90
448 458 0.749049 CCACTCATCGATCTGGCTCA 59.251 55.000 0.00 0.00 0.00 4.26
512 534 3.063588 GCACTAATCCTAACTCGTTTGGC 59.936 47.826 5.56 0.00 35.81 4.52
553 575 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
554 576 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
555 577 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
556 578 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
557 579 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
558 580 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
559 581 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
560 582 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
561 583 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
562 584 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
563 585 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
564 586 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
565 587 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
566 588 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
567 589 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
568 590 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
569 591 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
570 592 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
571 593 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
572 594 1.136000 CACTGTGTGTGTGTGTGTGTG 60.136 52.381 0.00 0.00 41.53 3.82
573 595 1.155889 CACTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 41.53 3.72
574 596 1.394572 CTCACTGTGTGTGTGTGTGTG 59.605 52.381 7.79 0.00 46.27 3.82
575 597 1.725641 CTCACTGTGTGTGTGTGTGT 58.274 50.000 7.79 0.00 46.27 3.72
580 602 3.561310 AGCATTAACTCACTGTGTGTGTG 59.439 43.478 15.36 14.50 46.27 3.82
581 603 3.808728 AGCATTAACTCACTGTGTGTGT 58.191 40.909 15.36 7.06 46.27 3.72
623 689 2.099592 CCGCGGTGGTGATAAACTACTA 59.900 50.000 19.50 0.00 40.04 1.82
624 690 1.134907 CCGCGGTGGTGATAAACTACT 60.135 52.381 19.50 0.00 40.04 2.57
625 691 1.283736 CCGCGGTGGTGATAAACTAC 58.716 55.000 19.50 0.00 39.46 2.73
690 767 1.108132 GGGACTAGCTACGACCCTGG 61.108 65.000 17.20 0.00 37.75 4.45
691 768 2.416901 GGGACTAGCTACGACCCTG 58.583 63.158 17.20 0.00 37.75 4.45
692 769 2.319622 AGGGACTAGCTACGACCCT 58.680 57.895 19.69 19.69 45.06 4.34
693 770 1.408340 GAAAGGGACTAGCTACGACCC 59.592 57.143 16.94 16.94 38.49 4.46
695 772 1.065251 CGGAAAGGGACTAGCTACGAC 59.935 57.143 0.00 0.00 38.49 4.34
696 773 1.340405 ACGGAAAGGGACTAGCTACGA 60.340 52.381 0.00 0.00 38.49 3.43
697 774 1.101331 ACGGAAAGGGACTAGCTACG 58.899 55.000 0.00 0.00 38.49 3.51
698 775 3.056322 TCAAACGGAAAGGGACTAGCTAC 60.056 47.826 0.00 0.00 38.49 3.58
699 776 3.167485 TCAAACGGAAAGGGACTAGCTA 58.833 45.455 0.00 0.00 38.49 3.32
778 862 6.349944 CGGGTTTACTTCTTGTTAGAGCTAGA 60.350 42.308 0.00 0.00 0.00 2.43
975 1070 0.174845 TACCGATTGACGAAGGCCAG 59.825 55.000 5.01 0.00 45.77 4.85
987 1088 4.461081 GGTGCTCTCATCTCTATACCGATT 59.539 45.833 0.00 0.00 0.00 3.34
995 1096 2.234143 CCATCGGTGCTCTCATCTCTA 58.766 52.381 0.00 0.00 0.00 2.43
1009 1114 4.363990 CGGCGATCTCCCCATCGG 62.364 72.222 0.00 0.00 44.89 4.18
1171 1280 2.260869 GGCTGCGTGGAGAAAGCAA 61.261 57.895 0.00 0.00 42.96 3.91
1173 1282 3.793144 CGGCTGCGTGGAGAAAGC 61.793 66.667 0.00 0.00 34.86 3.51
1189 1298 2.125753 GACTGCACCAGGAGAGCG 60.126 66.667 0.00 0.00 36.58 5.03
1196 1305 1.541310 TAAGGGACCGACTGCACCAG 61.541 60.000 0.00 0.00 37.52 4.00
1304 1419 1.135257 CGCAACACAACAGAAAACCCA 60.135 47.619 0.00 0.00 0.00 4.51
1340 1455 1.066422 GGTCGATCATGAGCTGCGA 59.934 57.895 9.64 8.78 33.66 5.10
1413 1532 0.953471 GATAGCCGGTGCACACAACA 60.953 55.000 20.43 0.22 41.13 3.33
1414 1533 1.794222 GATAGCCGGTGCACACAAC 59.206 57.895 20.43 4.68 41.13 3.32
1415 1534 1.739929 CGATAGCCGGTGCACACAA 60.740 57.895 20.43 0.00 41.13 3.33
1425 1544 1.730902 CCGTGCTGATCGATAGCCG 60.731 63.158 18.18 18.52 40.42 5.52
1429 1548 0.753848 TGTCCCCGTGCTGATCGATA 60.754 55.000 0.00 0.00 0.00 2.92
1572 1695 4.045771 TGTGCGCGCGAGACCTAA 62.046 61.111 37.18 10.35 0.00 2.69
1653 1779 4.545706 GCGGTCGATGATGGGGCA 62.546 66.667 0.00 0.00 0.00 5.36
1667 1793 2.418884 GGAGGAGAAGAAAAGGTAGCGG 60.419 54.545 0.00 0.00 0.00 5.52
1762 1892 1.394697 GTTCGTTTCCACAATGCACG 58.605 50.000 0.00 0.00 0.00 5.34
1830 1995 0.684535 TTCTTGGCGTCACCTCATCA 59.315 50.000 0.00 0.00 40.22 3.07
1836 2001 0.670854 GACCTCTTCTTGGCGTCACC 60.671 60.000 0.00 0.00 39.84 4.02
1896 2073 2.795973 CGACTGGTACGCCGATGA 59.204 61.111 0.00 0.00 37.67 2.92
1997 2174 2.185004 ACAAACTAGCACGCTGGAAT 57.815 45.000 9.58 0.00 0.00 3.01
2004 2181 1.069227 GGCTGGAAACAAACTAGCACG 60.069 52.381 0.00 0.00 42.22 5.34
2013 2191 4.469657 ACTGAATGTTAGGCTGGAAACAA 58.530 39.130 5.50 0.00 42.06 2.83
2087 2265 2.563179 GGTAGAGAGAGGCTTGTTGACA 59.437 50.000 0.00 0.00 0.00 3.58
2095 2273 4.873724 AGAGTTTAGGTAGAGAGAGGCT 57.126 45.455 0.00 0.00 0.00 4.58
2152 2623 2.658325 GCGTGTGATCTGTGCAATTTTC 59.342 45.455 0.00 0.00 0.00 2.29
2157 2628 0.532640 AGTGCGTGTGATCTGTGCAA 60.533 50.000 0.00 0.00 37.30 4.08
2177 2648 3.713288 TGAATGGTATACTACTGCGTGC 58.287 45.455 2.25 0.00 0.00 5.34
2178 2649 6.443792 TGTATGAATGGTATACTACTGCGTG 58.556 40.000 2.25 0.00 33.29 5.34
2179 2650 6.644248 TGTATGAATGGTATACTACTGCGT 57.356 37.500 2.25 0.00 33.29 5.24
2180 2651 6.035005 GCATGTATGAATGGTATACTACTGCG 59.965 42.308 2.25 0.00 33.29 5.18
2181 2652 6.035005 CGCATGTATGAATGGTATACTACTGC 59.965 42.308 2.25 7.22 33.29 4.40
2184 2655 6.183360 GCACGCATGTATGAATGGTATACTAC 60.183 42.308 2.25 0.00 33.29 2.73
2185 2656 5.867174 GCACGCATGTATGAATGGTATACTA 59.133 40.000 2.25 0.00 33.29 1.82
2186 2657 4.690748 GCACGCATGTATGAATGGTATACT 59.309 41.667 2.25 0.00 33.29 2.12
2187 2658 4.690748 AGCACGCATGTATGAATGGTATAC 59.309 41.667 0.00 0.00 0.00 1.47
2189 2660 3.499537 CAGCACGCATGTATGAATGGTAT 59.500 43.478 0.00 0.00 0.00 2.73
2191 2662 1.672363 CAGCACGCATGTATGAATGGT 59.328 47.619 0.00 0.00 0.00 3.55
2192 2663 1.598676 GCAGCACGCATGTATGAATGG 60.599 52.381 0.00 0.00 41.79 3.16
2193 2664 1.332686 AGCAGCACGCATGTATGAATG 59.667 47.619 0.00 0.00 46.13 2.67
2194 2665 1.332686 CAGCAGCACGCATGTATGAAT 59.667 47.619 0.00 0.00 46.13 2.57
2195 2666 0.728542 CAGCAGCACGCATGTATGAA 59.271 50.000 0.00 0.00 46.13 2.57
2196 2667 0.108233 TCAGCAGCACGCATGTATGA 60.108 50.000 0.00 0.00 46.13 2.15
2197 2668 0.027194 GTCAGCAGCACGCATGTATG 59.973 55.000 0.00 0.00 46.13 2.39
2198 2669 0.107993 AGTCAGCAGCACGCATGTAT 60.108 50.000 0.00 0.00 46.13 2.29
2199 2670 0.320683 AAGTCAGCAGCACGCATGTA 60.321 50.000 0.00 0.00 46.13 2.29
2200 2671 1.598962 AAGTCAGCAGCACGCATGT 60.599 52.632 0.00 0.00 46.13 3.21
2201 2672 1.154282 CAAGTCAGCAGCACGCATG 60.154 57.895 0.00 0.00 46.13 4.06
2202 2673 1.168407 AACAAGTCAGCAGCACGCAT 61.168 50.000 0.00 0.00 46.13 4.73
2203 2674 1.775039 GAACAAGTCAGCAGCACGCA 61.775 55.000 0.00 0.00 46.13 5.24
2204 2675 1.082496 GAACAAGTCAGCAGCACGC 60.082 57.895 0.00 0.00 42.91 5.34
2205 2676 0.041839 GTGAACAAGTCAGCAGCACG 60.042 55.000 0.00 0.00 36.74 5.34
2206 2677 0.041839 CGTGAACAAGTCAGCAGCAC 60.042 55.000 0.00 0.00 36.74 4.40
2207 2678 0.179086 TCGTGAACAAGTCAGCAGCA 60.179 50.000 0.00 0.00 36.74 4.41
2208 2679 0.937304 TTCGTGAACAAGTCAGCAGC 59.063 50.000 0.00 0.00 36.74 5.25
2209 2680 2.663879 GCATTCGTGAACAAGTCAGCAG 60.664 50.000 0.00 0.00 36.74 4.24
2225 2696 6.856135 TGATCATTCATAGTGAGTGCATTC 57.144 37.500 1.56 1.56 34.57 2.67
2227 2698 5.705905 CCATGATCATTCATAGTGAGTGCAT 59.294 40.000 5.16 0.00 40.70 3.96
2256 2727 1.923864 CCCAAAGTTGCGTTCACAAAC 59.076 47.619 0.00 0.00 0.00 2.93
2297 2768 3.620374 GCCATCACCATGTATCATCGATC 59.380 47.826 0.00 0.00 0.00 3.69
2298 2769 3.603532 GCCATCACCATGTATCATCGAT 58.396 45.455 0.00 0.00 0.00 3.59
2299 2770 2.289631 GGCCATCACCATGTATCATCGA 60.290 50.000 0.00 0.00 0.00 3.59
2300 2771 2.079158 GGCCATCACCATGTATCATCG 58.921 52.381 0.00 0.00 0.00 3.84
2341 2815 4.704833 CACACGCCCTCCCCTGTG 62.705 72.222 0.00 0.00 38.28 3.66
2342 2816 3.839046 TACACACGCCCTCCCCTGT 62.839 63.158 0.00 0.00 0.00 4.00
2402 3265 2.291741 GCAGTGGAAAAGTGAGTGGAAG 59.708 50.000 0.00 0.00 0.00 3.46
2431 3294 5.610552 CGAGTAAGCGCATTAGTATTTCTGC 60.611 44.000 11.47 0.00 0.00 4.26
2438 3301 1.269413 GCCCGAGTAAGCGCATTAGTA 60.269 52.381 11.47 0.00 0.00 1.82
2441 3304 0.808453 GTGCCCGAGTAAGCGCATTA 60.808 55.000 11.47 2.39 39.31 1.90
2505 3375 3.706594 CAGAAGGAGGGCTAATGACACTA 59.293 47.826 0.00 0.00 0.00 2.74
2558 3440 1.733526 GGCGCACTTGACTTTGGTT 59.266 52.632 10.83 0.00 0.00 3.67
2620 3503 4.435651 GCGCCTAACATGAGACTTAACAAC 60.436 45.833 0.00 0.00 0.00 3.32
2683 3567 7.380065 CGCTAGTGACCTAGAAGAATATTGTTC 59.620 40.741 15.68 15.68 42.90 3.18
2712 3596 1.847818 CGAGTTTCGTCTTGACCACA 58.152 50.000 0.00 0.00 34.72 4.17
3279 4337 4.454847 TGAAGTTAGAGAGAGGTGTACGTG 59.545 45.833 0.00 0.00 0.00 4.49
3280 4338 4.649692 TGAAGTTAGAGAGAGGTGTACGT 58.350 43.478 0.00 0.00 0.00 3.57
3282 4340 5.941647 ACTCTGAAGTTAGAGAGAGGTGTAC 59.058 44.000 15.29 0.00 45.61 2.90
3283 4341 6.129414 ACTCTGAAGTTAGAGAGAGGTGTA 57.871 41.667 15.29 0.00 45.61 2.90
3284 4342 4.993028 ACTCTGAAGTTAGAGAGAGGTGT 58.007 43.478 15.29 0.00 45.61 4.16
3285 4343 5.975693 AACTCTGAAGTTAGAGAGAGGTG 57.024 43.478 15.29 0.00 45.61 4.00
3286 4344 5.836358 ACAAACTCTGAAGTTAGAGAGAGGT 59.164 40.000 15.29 8.79 45.07 3.85
3443 4511 0.329261 CCTTGAGGATGGACCAGCAA 59.671 55.000 12.67 6.85 42.04 3.91
3523 4591 6.147864 AGAGCATTTTAAACAACTGCTTCA 57.852 33.333 12.40 0.00 42.87 3.02
3530 4598 8.925700 CATTTTCCCTAGAGCATTTTAAACAAC 58.074 33.333 0.00 0.00 0.00 3.32
3533 4601 8.523658 ACTCATTTTCCCTAGAGCATTTTAAAC 58.476 33.333 0.00 0.00 0.00 2.01
3537 4605 6.316390 CGTACTCATTTTCCCTAGAGCATTTT 59.684 38.462 0.00 0.00 0.00 1.82
3540 4608 4.740934 GCGTACTCATTTTCCCTAGAGCAT 60.741 45.833 0.00 0.00 0.00 3.79
3541 4609 3.430374 GCGTACTCATTTTCCCTAGAGCA 60.430 47.826 0.00 0.00 0.00 4.26
3543 4611 4.113354 GTGCGTACTCATTTTCCCTAGAG 58.887 47.826 0.00 0.00 0.00 2.43
3547 4615 1.274167 TCGTGCGTACTCATTTTCCCT 59.726 47.619 1.24 0.00 0.00 4.20
3549 4617 2.034842 CGATCGTGCGTACTCATTTTCC 60.035 50.000 7.03 0.00 0.00 3.13
4193 5275 0.460284 CGTGCGCCTTCTGGTAGAAT 60.460 55.000 4.18 0.00 33.13 2.40
4718 5809 1.595357 CTGGTAGTCCCCGTGGAAC 59.405 63.158 0.00 0.00 44.07 3.62
4778 5869 4.385405 ACGCTGAGGCTCTGCACC 62.385 66.667 35.23 14.92 40.74 5.01
4796 5887 1.080705 GTTGTCGGACTCCCTGTCG 60.081 63.158 9.88 0.00 46.24 4.35
4848 5942 1.725557 CGCTAGCTAAGACGCCCAGA 61.726 60.000 13.93 0.00 0.00 3.86
4849 5943 1.299468 CGCTAGCTAAGACGCCCAG 60.299 63.158 13.93 0.00 0.00 4.45
4851 5945 2.658918 GCGCTAGCTAAGACGCCC 60.659 66.667 19.36 0.00 41.70 6.13
4859 5953 1.111116 AACCGTATGGGCGCTAGCTA 61.111 55.000 13.93 0.00 44.37 3.32
4878 5989 5.633117 TCAATGGCAGGCATATCTGAAATA 58.367 37.500 10.42 0.00 36.93 1.40
4902 6013 7.264221 ACAATGCTCTAAATCAACAACAACAA 58.736 30.769 0.00 0.00 0.00 2.83
4903 6014 6.804677 ACAATGCTCTAAATCAACAACAACA 58.195 32.000 0.00 0.00 0.00 3.33
4904 6015 7.698836 AACAATGCTCTAAATCAACAACAAC 57.301 32.000 0.00 0.00 0.00 3.32
4905 6016 9.979578 AATAACAATGCTCTAAATCAACAACAA 57.020 25.926 0.00 0.00 0.00 2.83
4906 6017 9.409312 CAATAACAATGCTCTAAATCAACAACA 57.591 29.630 0.00 0.00 0.00 3.33
4907 6018 8.863049 CCAATAACAATGCTCTAAATCAACAAC 58.137 33.333 0.00 0.00 0.00 3.32
4929 6046 2.224867 CGGGCTCCTATGAAATCCCAAT 60.225 50.000 0.00 0.00 33.43 3.16
5018 6136 8.624776 AGAACAAATCGAACTTCTTCTTGATTT 58.375 29.630 0.00 0.00 36.71 2.17
5056 6174 6.720217 AAGAGTTATATTTGGGATAGGGGG 57.280 41.667 0.00 0.00 0.00 5.40
5057 6175 7.175797 GGAAAGAGTTATATTTGGGATAGGGG 58.824 42.308 0.00 0.00 0.00 4.79
5058 6176 7.755618 TGGAAAGAGTTATATTTGGGATAGGG 58.244 38.462 0.00 0.00 0.00 3.53
5059 6177 8.660435 TCTGGAAAGAGTTATATTTGGGATAGG 58.340 37.037 0.00 0.00 0.00 2.57
5060 6178 9.717942 CTCTGGAAAGAGTTATATTTGGGATAG 57.282 37.037 0.00 0.00 0.00 2.08
5061 6179 9.447279 TCTCTGGAAAGAGTTATATTTGGGATA 57.553 33.333 2.86 0.00 37.23 2.59
5062 6180 8.337118 TCTCTGGAAAGAGTTATATTTGGGAT 57.663 34.615 2.86 0.00 37.23 3.85
5063 6181 7.749377 TCTCTGGAAAGAGTTATATTTGGGA 57.251 36.000 2.86 0.00 37.23 4.37
5064 6182 8.986929 AATCTCTGGAAAGAGTTATATTTGGG 57.013 34.615 2.86 0.00 37.23 4.12
5071 6189 8.924511 TTGTTGAAATCTCTGGAAAGAGTTAT 57.075 30.769 2.86 0.00 34.00 1.89
5072 6190 7.993183 ACTTGTTGAAATCTCTGGAAAGAGTTA 59.007 33.333 2.86 0.00 34.00 2.24
5073 6191 6.830838 ACTTGTTGAAATCTCTGGAAAGAGTT 59.169 34.615 2.86 0.00 36.37 3.01
5074 6192 6.261826 CACTTGTTGAAATCTCTGGAAAGAGT 59.738 38.462 2.86 0.00 37.23 3.24
5075 6193 6.484643 TCACTTGTTGAAATCTCTGGAAAGAG 59.515 38.462 0.00 0.00 37.28 2.85
5076 6194 6.260936 GTCACTTGTTGAAATCTCTGGAAAGA 59.739 38.462 0.00 0.00 35.39 2.52
5077 6195 6.261826 AGTCACTTGTTGAAATCTCTGGAAAG 59.738 38.462 0.00 0.00 35.39 2.62
5078 6196 6.122277 AGTCACTTGTTGAAATCTCTGGAAA 58.878 36.000 0.00 0.00 35.39 3.13
5079 6197 5.684704 AGTCACTTGTTGAAATCTCTGGAA 58.315 37.500 0.00 0.00 35.39 3.53
5080 6198 5.296151 AGTCACTTGTTGAAATCTCTGGA 57.704 39.130 0.00 0.00 35.39 3.86
5081 6199 5.991606 TGTAGTCACTTGTTGAAATCTCTGG 59.008 40.000 0.00 0.00 35.39 3.86
5082 6200 7.664082 ATGTAGTCACTTGTTGAAATCTCTG 57.336 36.000 0.00 0.00 35.39 3.35
5083 6201 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
5084 6202 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
5085 6203 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
5086 6204 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
5087 6205 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
5088 6206 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
5089 6207 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
5090 6208 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
5091 6209 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
5092 6210 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
5093 6211 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
5094 6212 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
5095 6213 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
5096 6214 4.243270 GTTTTGCTCCGTATGTAGTCACT 58.757 43.478 0.00 0.00 0.00 3.41
5097 6215 3.060363 CGTTTTGCTCCGTATGTAGTCAC 59.940 47.826 0.00 0.00 0.00 3.67
5098 6216 3.057386 TCGTTTTGCTCCGTATGTAGTCA 60.057 43.478 0.00 0.00 0.00 3.41
5099 6217 3.504863 TCGTTTTGCTCCGTATGTAGTC 58.495 45.455 0.00 0.00 0.00 2.59
5100 6218 3.057033 ACTCGTTTTGCTCCGTATGTAGT 60.057 43.478 0.00 0.00 0.00 2.73
5101 6219 3.303495 CACTCGTTTTGCTCCGTATGTAG 59.697 47.826 0.00 0.00 0.00 2.74
5102 6220 3.057386 TCACTCGTTTTGCTCCGTATGTA 60.057 43.478 0.00 0.00 0.00 2.29
5103 6221 2.066262 CACTCGTTTTGCTCCGTATGT 58.934 47.619 0.00 0.00 0.00 2.29
5104 6222 2.333926 TCACTCGTTTTGCTCCGTATG 58.666 47.619 0.00 0.00 0.00 2.39
5105 6223 2.736144 TCACTCGTTTTGCTCCGTAT 57.264 45.000 0.00 0.00 0.00 3.06
5106 6224 2.512485 TTCACTCGTTTTGCTCCGTA 57.488 45.000 0.00 0.00 0.00 4.02
5107 6225 1.798813 GATTCACTCGTTTTGCTCCGT 59.201 47.619 0.00 0.00 0.00 4.69
5108 6226 2.069273 AGATTCACTCGTTTTGCTCCG 58.931 47.619 0.00 0.00 0.00 4.63
5109 6227 3.060895 CGTAGATTCACTCGTTTTGCTCC 59.939 47.826 0.00 0.00 0.00 4.70
5110 6228 3.482112 GCGTAGATTCACTCGTTTTGCTC 60.482 47.826 0.00 0.00 0.00 4.26
5111 6229 2.412089 GCGTAGATTCACTCGTTTTGCT 59.588 45.455 0.00 0.00 0.00 3.91
5112 6230 2.412089 AGCGTAGATTCACTCGTTTTGC 59.588 45.455 0.00 0.00 0.00 3.68
5113 6231 4.647291 AAGCGTAGATTCACTCGTTTTG 57.353 40.909 0.00 0.00 0.00 2.44
5114 6232 6.774354 TTAAAGCGTAGATTCACTCGTTTT 57.226 33.333 11.69 11.69 31.23 2.43
5115 6233 6.774354 TTTAAAGCGTAGATTCACTCGTTT 57.226 33.333 0.00 0.00 31.23 3.60
5116 6234 6.774354 TTTTAAAGCGTAGATTCACTCGTT 57.226 33.333 0.00 0.00 31.23 3.85
5117 6235 6.963049 ATTTTAAAGCGTAGATTCACTCGT 57.037 33.333 0.00 0.00 31.23 4.18
5118 6236 8.540492 ACATATTTTAAAGCGTAGATTCACTCG 58.460 33.333 0.00 0.00 31.23 4.18
5138 6256 9.772973 ACAACACACGGATATATGTAACATATT 57.227 29.630 0.00 0.00 0.00 1.28
5141 6259 9.772973 ATTACAACACACGGATATATGTAACAT 57.227 29.630 0.00 0.00 35.40 2.71
5142 6260 9.251792 GATTACAACACACGGATATATGTAACA 57.748 33.333 0.00 0.00 35.40 2.41
5143 6261 8.706035 GGATTACAACACACGGATATATGTAAC 58.294 37.037 0.00 0.00 35.40 2.50
5144 6262 8.422566 TGGATTACAACACACGGATATATGTAA 58.577 33.333 0.00 0.00 36.55 2.41
5145 6263 7.953752 TGGATTACAACACACGGATATATGTA 58.046 34.615 0.00 0.00 0.00 2.29
5146 6264 6.822442 TGGATTACAACACACGGATATATGT 58.178 36.000 0.00 0.00 0.00 2.29
5147 6265 7.905604 ATGGATTACAACACACGGATATATG 57.094 36.000 0.00 0.00 0.00 1.78
5148 6266 8.783093 CAAATGGATTACAACACACGGATATAT 58.217 33.333 0.00 0.00 0.00 0.86
5149 6267 7.988028 TCAAATGGATTACAACACACGGATATA 59.012 33.333 0.00 0.00 0.00 0.86
5150 6268 6.826231 TCAAATGGATTACAACACACGGATAT 59.174 34.615 0.00 0.00 0.00 1.63
5151 6269 6.174049 TCAAATGGATTACAACACACGGATA 58.826 36.000 0.00 0.00 0.00 2.59
5152 6270 5.007034 TCAAATGGATTACAACACACGGAT 58.993 37.500 0.00 0.00 0.00 4.18
5153 6271 4.390264 TCAAATGGATTACAACACACGGA 58.610 39.130 0.00 0.00 0.00 4.69
5154 6272 4.757799 TCAAATGGATTACAACACACGG 57.242 40.909 0.00 0.00 0.00 4.94
5155 6273 6.640499 ACATTTCAAATGGATTACAACACACG 59.360 34.615 14.70 0.00 0.00 4.49
5156 6274 7.867403 AGACATTTCAAATGGATTACAACACAC 59.133 33.333 14.70 0.00 0.00 3.82
5157 6275 7.950512 AGACATTTCAAATGGATTACAACACA 58.049 30.769 14.70 0.00 0.00 3.72
5158 6276 9.906660 TTAGACATTTCAAATGGATTACAACAC 57.093 29.630 14.70 0.00 0.00 3.32
5186 6304 9.907229 CTCCCTCTGTTCCTAAATATAAGTTTT 57.093 33.333 0.00 0.00 0.00 2.43
5187 6305 9.059023 ACTCCCTCTGTTCCTAAATATAAGTTT 57.941 33.333 0.00 0.00 0.00 2.66
5188 6306 8.625467 ACTCCCTCTGTTCCTAAATATAAGTT 57.375 34.615 0.00 0.00 0.00 2.66
5189 6307 9.145442 GTACTCCCTCTGTTCCTAAATATAAGT 57.855 37.037 0.00 0.00 0.00 2.24
5190 6308 9.144298 TGTACTCCCTCTGTTCCTAAATATAAG 57.856 37.037 0.00 0.00 0.00 1.73
5191 6309 9.496710 TTGTACTCCCTCTGTTCCTAAATATAA 57.503 33.333 0.00 0.00 0.00 0.98
5192 6310 9.496710 TTTGTACTCCCTCTGTTCCTAAATATA 57.503 33.333 0.00 0.00 0.00 0.86
5193 6311 7.989947 TTGTACTCCCTCTGTTCCTAAATAT 57.010 36.000 0.00 0.00 0.00 1.28
5194 6312 7.801893 TTTGTACTCCCTCTGTTCCTAAATA 57.198 36.000 0.00 0.00 0.00 1.40
5195 6313 6.697641 TTTGTACTCCCTCTGTTCCTAAAT 57.302 37.500 0.00 0.00 0.00 1.40
5196 6314 6.100714 ACTTTTGTACTCCCTCTGTTCCTAAA 59.899 38.462 0.00 0.00 0.00 1.85
5197 6315 5.605488 ACTTTTGTACTCCCTCTGTTCCTAA 59.395 40.000 0.00 0.00 0.00 2.69
5198 6316 5.152934 ACTTTTGTACTCCCTCTGTTCCTA 58.847 41.667 0.00 0.00 0.00 2.94
5199 6317 3.974642 ACTTTTGTACTCCCTCTGTTCCT 59.025 43.478 0.00 0.00 0.00 3.36
5200 6318 4.353383 ACTTTTGTACTCCCTCTGTTCC 57.647 45.455 0.00 0.00 0.00 3.62
5201 6319 5.505819 GCAAACTTTTGTACTCCCTCTGTTC 60.506 44.000 3.74 0.00 40.24 3.18
5202 6320 4.338400 GCAAACTTTTGTACTCCCTCTGTT 59.662 41.667 3.74 0.00 40.24 3.16
5203 6321 3.883489 GCAAACTTTTGTACTCCCTCTGT 59.117 43.478 3.74 0.00 40.24 3.41
5204 6322 3.882888 TGCAAACTTTTGTACTCCCTCTG 59.117 43.478 3.74 0.00 40.24 3.35
5205 6323 4.164843 TGCAAACTTTTGTACTCCCTCT 57.835 40.909 3.74 0.00 40.24 3.69
5206 6324 4.278419 ACATGCAAACTTTTGTACTCCCTC 59.722 41.667 0.00 0.00 40.24 4.30
5207 6325 4.215109 ACATGCAAACTTTTGTACTCCCT 58.785 39.130 0.00 0.00 40.24 4.20
5208 6326 4.037446 TGACATGCAAACTTTTGTACTCCC 59.963 41.667 0.00 0.00 40.24 4.30
5209 6327 5.181690 TGACATGCAAACTTTTGTACTCC 57.818 39.130 0.00 0.00 40.24 3.85
5210 6328 7.649306 AGAAATGACATGCAAACTTTTGTACTC 59.351 33.333 0.00 0.00 40.24 2.59
5211 6329 7.436080 CAGAAATGACATGCAAACTTTTGTACT 59.564 33.333 0.00 0.00 40.24 2.73
5212 6330 7.558137 CAGAAATGACATGCAAACTTTTGTAC 58.442 34.615 0.00 0.00 40.24 2.90
5213 6331 6.200665 GCAGAAATGACATGCAAACTTTTGTA 59.799 34.615 0.00 0.00 40.24 2.41
5214 6332 5.006941 GCAGAAATGACATGCAAACTTTTGT 59.993 36.000 0.00 0.00 40.24 2.83
5215 6333 5.437263 GCAGAAATGACATGCAAACTTTTG 58.563 37.500 0.00 0.00 39.75 2.44
5216 6334 4.512571 GGCAGAAATGACATGCAAACTTTT 59.487 37.500 0.00 0.00 41.78 2.27
5217 6335 4.060205 GGCAGAAATGACATGCAAACTTT 58.940 39.130 0.00 0.00 41.78 2.66
5304 6427 3.222603 AGAAACCGATTGTTCAGCCTTT 58.777 40.909 0.00 0.00 35.67 3.11
5319 6442 7.771183 TGATTAATGTTTGATGGCTAGAAACC 58.229 34.615 0.00 0.00 0.00 3.27
5323 6446 7.828717 TCTGTTGATTAATGTTTGATGGCTAGA 59.171 33.333 0.00 0.00 0.00 2.43
5373 6581 0.103572 GAGGGGCGTCTAATTGCGTA 59.896 55.000 0.00 0.00 0.00 4.42
5374 6582 1.153429 GAGGGGCGTCTAATTGCGT 60.153 57.895 0.00 0.00 0.00 5.24
5375 6583 1.144057 AGAGGGGCGTCTAATTGCG 59.856 57.895 0.00 0.00 0.00 4.85
5376 6584 0.107654 ACAGAGGGGCGTCTAATTGC 60.108 55.000 0.00 0.00 0.00 3.56
5450 6660 4.051237 GCTGTGTCACAATCGCTCATATA 58.949 43.478 7.18 0.00 0.00 0.86
5453 6663 1.081892 GCTGTGTCACAATCGCTCAT 58.918 50.000 7.18 0.00 0.00 2.90
5455 6665 1.081892 ATGCTGTGTCACAATCGCTC 58.918 50.000 14.60 0.00 0.00 5.03
5495 6710 4.668576 ATGCGATTTTCTAGTGTGTGTG 57.331 40.909 0.00 0.00 0.00 3.82
5496 6711 4.083324 CCAATGCGATTTTCTAGTGTGTGT 60.083 41.667 0.00 0.00 0.00 3.72
5497 6712 4.406069 CCAATGCGATTTTCTAGTGTGTG 58.594 43.478 0.00 0.00 0.00 3.82
5498 6713 3.440173 CCCAATGCGATTTTCTAGTGTGT 59.560 43.478 0.00 0.00 0.00 3.72
5499 6714 3.181497 CCCCAATGCGATTTTCTAGTGTG 60.181 47.826 0.00 0.00 0.00 3.82
5500 6715 3.016736 CCCCAATGCGATTTTCTAGTGT 58.983 45.455 0.00 0.00 0.00 3.55
5501 6716 2.358898 CCCCCAATGCGATTTTCTAGTG 59.641 50.000 0.00 0.00 0.00 2.74
5522 6737 3.743396 GCATATCGAGTGAAAGGTCATCC 59.257 47.826 4.90 0.00 35.80 3.51
5523 6738 4.626042 AGCATATCGAGTGAAAGGTCATC 58.374 43.478 4.90 0.00 35.80 2.92
5567 6782 5.409520 GGGGTTTGAAATTTCTTGAATGCTC 59.590 40.000 18.64 3.09 0.00 4.26
5631 6846 8.434661 GGTTGAACAATTTAAGCACATGTATTG 58.565 33.333 12.94 12.94 0.00 1.90
5638 6853 7.043961 TGTATGGTTGAACAATTTAAGCACA 57.956 32.000 0.00 0.00 35.04 4.57
5661 6876 6.601613 TGAACAATTTAAGCCCCTGTAGTATG 59.398 38.462 0.00 0.00 0.00 2.39
5662 6877 6.727394 TGAACAATTTAAGCCCCTGTAGTAT 58.273 36.000 0.00 0.00 0.00 2.12
5664 6879 4.993028 TGAACAATTTAAGCCCCTGTAGT 58.007 39.130 0.00 0.00 0.00 2.73
5665 6880 5.336451 GGTTGAACAATTTAAGCCCCTGTAG 60.336 44.000 0.00 0.00 0.00 2.74
5666 6881 4.525100 GGTTGAACAATTTAAGCCCCTGTA 59.475 41.667 0.00 0.00 0.00 2.74
5667 6882 3.323691 GGTTGAACAATTTAAGCCCCTGT 59.676 43.478 0.00 0.00 0.00 4.00
5668 6883 3.323403 TGGTTGAACAATTTAAGCCCCTG 59.677 43.478 0.00 0.00 0.00 4.45
5669 6884 3.582164 TGGTTGAACAATTTAAGCCCCT 58.418 40.909 0.00 0.00 0.00 4.79
5670 6885 4.551702 ATGGTTGAACAATTTAAGCCCC 57.448 40.909 0.00 0.00 0.00 5.80
5671 6886 6.697395 AGTTATGGTTGAACAATTTAAGCCC 58.303 36.000 0.00 0.00 0.00 5.19
5672 6887 8.495148 CAAAGTTATGGTTGAACAATTTAAGCC 58.505 33.333 0.00 0.00 0.00 4.35
5673 6888 8.009409 GCAAAGTTATGGTTGAACAATTTAAGC 58.991 33.333 0.00 0.00 0.00 3.09
5674 6889 9.039870 TGCAAAGTTATGGTTGAACAATTTAAG 57.960 29.630 0.00 0.00 0.00 1.85
5676 6891 8.200792 AGTGCAAAGTTATGGTTGAACAATTTA 58.799 29.630 0.00 0.00 35.96 1.40
5677 6892 7.047271 AGTGCAAAGTTATGGTTGAACAATTT 58.953 30.769 0.00 0.00 35.96 1.82
5678 6893 6.581712 AGTGCAAAGTTATGGTTGAACAATT 58.418 32.000 0.00 0.00 35.96 2.32
5679 6894 6.160576 AGTGCAAAGTTATGGTTGAACAAT 57.839 33.333 0.00 0.00 35.96 2.71
5680 6895 5.587289 GAGTGCAAAGTTATGGTTGAACAA 58.413 37.500 0.00 0.00 35.96 2.83
5681 6896 4.260990 CGAGTGCAAAGTTATGGTTGAACA 60.261 41.667 0.00 0.00 35.96 3.18
5682 6897 4.219033 CGAGTGCAAAGTTATGGTTGAAC 58.781 43.478 0.00 0.00 34.01 3.18
5683 6898 3.304391 GCGAGTGCAAAGTTATGGTTGAA 60.304 43.478 0.00 0.00 42.15 2.69
5685 6900 2.226437 AGCGAGTGCAAAGTTATGGTTG 59.774 45.455 0.00 0.00 46.23 3.77
5687 6902 2.076863 GAGCGAGTGCAAAGTTATGGT 58.923 47.619 0.00 0.00 46.23 3.55
5688 6903 2.076100 TGAGCGAGTGCAAAGTTATGG 58.924 47.619 0.00 0.00 46.23 2.74
5689 6904 2.475187 GCTGAGCGAGTGCAAAGTTATG 60.475 50.000 0.00 0.00 46.23 1.90
5744 6961 1.429148 GGAACATAAGGTGCTCGCGG 61.429 60.000 6.13 0.00 0.00 6.46
5748 6965 2.094182 TCGTCAGGAACATAAGGTGCTC 60.094 50.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.