Multiple sequence alignment - TraesCS4D01G258700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G258700 chr4D 100.000 4445 0 0 1 4445 428563419 428567863 0.000000e+00 8209
1 TraesCS4D01G258700 chr4D 100.000 2918 0 0 4604 7521 428568022 428570939 0.000000e+00 5389
2 TraesCS4D01G258700 chr4D 98.799 2249 25 1 2197 4445 93830513 93832759 0.000000e+00 4002
3 TraesCS4D01G258700 chr4D 98.800 2250 22 3 2197 4445 83144027 83146272 0.000000e+00 4000
4 TraesCS4D01G258700 chr4D 98.713 2254 24 3 2197 4445 306781892 306779639 0.000000e+00 3997
5 TraesCS4D01G258700 chr4D 99.422 519 3 0 4604 5122 83146341 83146859 0.000000e+00 942
6 TraesCS4D01G258700 chr4D 93.548 93 6 0 7218 7310 164649545 164649453 1.020000e-28 139
7 TraesCS4D01G258700 chr4D 89.423 104 11 0 7213 7316 267510569 267510672 1.700000e-26 132
8 TraesCS4D01G258700 chr2D 99.200 2249 15 1 2197 4445 106329862 106332107 0.000000e+00 4050
9 TraesCS4D01G258700 chr2D 98.888 2249 20 3 2197 4445 463076986 463079229 0.000000e+00 4010
10 TraesCS4D01G258700 chr2D 99.807 519 1 0 4604 5122 351053251 351053769 0.000000e+00 953
11 TraesCS4D01G258700 chr6A 98.977 2249 23 0 2197 4445 410905983 410903735 0.000000e+00 4026
12 TraesCS4D01G258700 chr6A 99.615 519 2 0 4604 5122 410902035 410901517 0.000000e+00 948
13 TraesCS4D01G258700 chr5B 98.844 2249 26 0 2197 4445 452125700 452127948 0.000000e+00 4010
14 TraesCS4D01G258700 chr5B 92.708 96 7 0 7222 7317 22106484 22106389 1.020000e-28 139
15 TraesCS4D01G258700 chr5B 92.708 96 7 0 7222 7317 22114548 22114453 1.020000e-28 139
16 TraesCS4D01G258700 chr1D 98.846 2254 16 3 2197 4445 94053496 94051248 0.000000e+00 4010
17 TraesCS4D01G258700 chr1D 99.422 519 3 0 4604 5122 94051179 94050661 0.000000e+00 942
18 TraesCS4D01G258700 chr1D 99.422 519 3 0 4604 5122 223524051 223524569 0.000000e+00 942
19 TraesCS4D01G258700 chr7A 98.755 2249 26 2 2197 4445 109349120 109351366 0.000000e+00 3997
20 TraesCS4D01G258700 chr4B 96.675 1564 39 6 5382 6934 526954524 526952963 0.000000e+00 2588
21 TraesCS4D01G258700 chr4B 86.496 1955 142 50 1 1897 526956934 526955044 0.000000e+00 2036
22 TraesCS4D01G258700 chr4B 96.538 260 2 2 5122 5381 526954851 526954599 2.510000e-114 424
23 TraesCS4D01G258700 chr4B 97.414 232 4 2 1969 2198 526955058 526954827 1.970000e-105 394
24 TraesCS4D01G258700 chr4B 89.510 286 21 5 6942 7223 526952587 526952307 3.340000e-93 353
25 TraesCS4D01G258700 chr4B 95.402 87 4 0 7222 7308 6067737 6067651 1.020000e-28 139
26 TraesCS4D01G258700 chr4A 95.787 1614 51 5 5122 6728 37827070 37825467 0.000000e+00 2588
27 TraesCS4D01G258700 chr4A 89.315 1460 85 33 425 1848 37828700 37827276 0.000000e+00 1766
28 TraesCS4D01G258700 chr4A 88.778 401 22 12 6774 7160 37825469 37825078 3.180000e-128 470
29 TraesCS4D01G258700 chr4A 95.359 237 3 4 1963 2199 37827273 37827045 3.310000e-98 370
30 TraesCS4D01G258700 chr4A 88.372 258 21 3 81 333 37829229 37828976 1.230000e-77 302
31 TraesCS4D01G258700 chrUn 99.615 519 2 0 4604 5122 70286361 70285843 0.000000e+00 948
32 TraesCS4D01G258700 chrUn 95.455 88 4 0 7222 7309 97273184 97273097 2.830000e-29 141
33 TraesCS4D01G258700 chrUn 92.708 96 7 0 7222 7317 289138431 289138336 1.020000e-28 139
34 TraesCS4D01G258700 chr3A 99.615 519 2 0 4604 5122 91016487 91017005 0.000000e+00 948
35 TraesCS4D01G258700 chr7D 99.422 519 3 0 4604 5122 463883099 463883617 0.000000e+00 942
36 TraesCS4D01G258700 chr1A 99.422 519 3 0 4604 5122 396446214 396445696 0.000000e+00 942
37 TraesCS4D01G258700 chr1B 96.512 86 3 0 7222 7307 640967393 640967478 7.870000e-30 143
38 TraesCS4D01G258700 chr3B 89.899 99 10 0 7222 7320 581707629 581707531 2.200000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G258700 chr4D 428563419 428570939 7520 False 6799.0 8209 100.0000 1 7521 2 chr4D.!!$F4 7520
1 TraesCS4D01G258700 chr4D 93830513 93832759 2246 False 4002.0 4002 98.7990 2197 4445 1 chr4D.!!$F1 2248
2 TraesCS4D01G258700 chr4D 306779639 306781892 2253 True 3997.0 3997 98.7130 2197 4445 1 chr4D.!!$R2 2248
3 TraesCS4D01G258700 chr4D 83144027 83146859 2832 False 2471.0 4000 99.1110 2197 5122 2 chr4D.!!$F3 2925
4 TraesCS4D01G258700 chr2D 106329862 106332107 2245 False 4050.0 4050 99.2000 2197 4445 1 chr2D.!!$F1 2248
5 TraesCS4D01G258700 chr2D 463076986 463079229 2243 False 4010.0 4010 98.8880 2197 4445 1 chr2D.!!$F3 2248
6 TraesCS4D01G258700 chr2D 351053251 351053769 518 False 953.0 953 99.8070 4604 5122 1 chr2D.!!$F2 518
7 TraesCS4D01G258700 chr6A 410901517 410905983 4466 True 2487.0 4026 99.2960 2197 5122 2 chr6A.!!$R1 2925
8 TraesCS4D01G258700 chr5B 452125700 452127948 2248 False 4010.0 4010 98.8440 2197 4445 1 chr5B.!!$F1 2248
9 TraesCS4D01G258700 chr1D 94050661 94053496 2835 True 2476.0 4010 99.1340 2197 5122 2 chr1D.!!$R1 2925
10 TraesCS4D01G258700 chr1D 223524051 223524569 518 False 942.0 942 99.4220 4604 5122 1 chr1D.!!$F1 518
11 TraesCS4D01G258700 chr7A 109349120 109351366 2246 False 3997.0 3997 98.7550 2197 4445 1 chr7A.!!$F1 2248
12 TraesCS4D01G258700 chr4B 526952307 526956934 4627 True 1159.0 2588 93.3266 1 7223 5 chr4B.!!$R2 7222
13 TraesCS4D01G258700 chr4A 37825078 37829229 4151 True 1099.2 2588 91.5222 81 7160 5 chr4A.!!$R1 7079
14 TraesCS4D01G258700 chrUn 70285843 70286361 518 True 948.0 948 99.6150 4604 5122 1 chrUn.!!$R1 518
15 TraesCS4D01G258700 chr3A 91016487 91017005 518 False 948.0 948 99.6150 4604 5122 1 chr3A.!!$F1 518
16 TraesCS4D01G258700 chr7D 463883099 463883617 518 False 942.0 942 99.4220 4604 5122 1 chr7D.!!$F1 518
17 TraesCS4D01G258700 chr1A 396445696 396446214 518 True 942.0 942 99.4220 4604 5122 1 chr1A.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
423 615 0.036388 ATCACACTCCCGAATGCGTT 60.036 50.000 0.00 0.0 35.23 4.84 F
639 872 0.105760 ATGCAGATCGGAGGAGGAGT 60.106 55.000 0.00 0.0 0.00 3.85 F
643 876 0.107831 AGATCGGAGGAGGAGTCGAG 59.892 60.000 0.00 0.0 35.07 4.04 F
842 1079 0.746923 GAATCTTAAAGCGGGCCCGT 60.747 55.000 42.53 27.4 42.09 5.28 F
1627 1891 0.818040 ACACGTGCAGAAAGGGGTTC 60.818 55.000 17.22 0.0 36.38 3.62 F
1711 1975 1.038130 ACAGTTAGAGGATCGCGGCT 61.038 55.000 6.13 0.0 42.67 5.52 F
1723 1987 1.514003 TCGCGGCTTGAATGTTTACA 58.486 45.000 6.13 0.0 0.00 2.41 F
3422 3695 2.892852 CAAGCTGTTCAATGGGGAGAAA 59.107 45.455 0.00 0.0 0.00 2.52 F
3587 3860 1.192146 TGTGGAAAGGTCTCGGGGAG 61.192 60.000 0.00 0.0 0.00 4.30 F
5037 6955 1.206878 TGCTATCCATGTGCCAGAGT 58.793 50.000 0.00 0.0 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1610 1873 0.182775 AAGAACCCCTTTCTGCACGT 59.817 50.000 0.00 0.0 44.41 4.49 R
1611 1874 0.593128 CAAGAACCCCTTTCTGCACG 59.407 55.000 0.00 0.0 44.41 5.34 R
1696 1960 0.821517 TTCAAGCCGCGATCCTCTAA 59.178 50.000 8.23 0.0 0.00 2.10 R
1723 1987 2.616510 GGCAGTTACTTCTCCAGCACAT 60.617 50.000 0.00 0.0 0.00 3.21 R
3198 3471 0.609131 CGACCCCTTGCTTCACCAAT 60.609 55.000 0.00 0.0 0.00 3.16 R
3329 3602 1.686325 GGCCTGCTCCGTCCTTGATA 61.686 60.000 0.00 0.0 0.00 2.15 R
3587 3860 5.578005 TGGTTAGCCATACTATCGCTATC 57.422 43.478 0.00 0.0 40.46 2.08 R
5122 7040 1.317613 TGCATTGTGGTCTTGTGGAC 58.682 50.000 0.00 0.0 43.79 4.02 R
5123 7041 1.955778 CTTGCATTGTGGTCTTGTGGA 59.044 47.619 0.00 0.0 0.00 4.02 R
6956 9327 0.615331 CACCAGCAGTAGGGATGTGT 59.385 55.000 0.00 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 3.846588 ACATACTGACCCATCCAAAGACT 59.153 43.478 0.00 0.00 0.00 3.24
61 62 2.443255 ACTGACCCATCCAAAGACTTGT 59.557 45.455 0.00 0.00 0.00 3.16
69 70 7.643123 ACCCATCCAAAGACTTGTAATAGAAT 58.357 34.615 0.00 0.00 0.00 2.40
107 112 6.992063 AAACTGAACTAGCATACTTGGATG 57.008 37.500 0.00 0.00 0.00 3.51
117 122 4.716784 AGCATACTTGGATGGTGACTCTAA 59.283 41.667 0.00 0.00 36.22 2.10
124 129 3.648067 TGGATGGTGACTCTAATGGATCC 59.352 47.826 4.20 4.20 0.00 3.36
136 141 5.389520 TCTAATGGATCCAACAACCACAAA 58.610 37.500 20.67 0.00 36.49 2.83
152 157 1.341976 ACAAAGGTTGGCACACTTCCT 60.342 47.619 3.63 0.00 39.29 3.36
155 160 0.179018 AGGTTGGCACACTTCCTGAC 60.179 55.000 0.00 0.00 39.29 3.51
158 163 0.819259 TTGGCACACTTCCTGACTGC 60.819 55.000 0.00 0.00 39.29 4.40
161 166 1.849976 GCACACTTCCTGACTGCTGC 61.850 60.000 0.00 0.00 0.00 5.25
162 167 0.533531 CACACTTCCTGACTGCTGCA 60.534 55.000 0.88 0.88 0.00 4.41
184 189 3.334881 ACTTCTCCATTCCTTGTCCCATT 59.665 43.478 0.00 0.00 0.00 3.16
185 190 3.370840 TCTCCATTCCTTGTCCCATTG 57.629 47.619 0.00 0.00 0.00 2.82
186 191 2.649312 TCTCCATTCCTTGTCCCATTGT 59.351 45.455 0.00 0.00 0.00 2.71
187 192 2.756760 CTCCATTCCTTGTCCCATTGTG 59.243 50.000 0.00 0.00 0.00 3.33
189 194 2.899256 CCATTCCTTGTCCCATTGTGTT 59.101 45.455 0.00 0.00 0.00 3.32
191 196 3.304911 TTCCTTGTCCCATTGTGTTCA 57.695 42.857 0.00 0.00 0.00 3.18
219 226 5.833406 TCATGTGCACAATTCGGATAAAT 57.167 34.783 25.72 0.00 0.00 1.40
258 268 4.415150 CTGCCCGACCACAGCCAT 62.415 66.667 0.00 0.00 0.00 4.40
260 270 2.329539 CTGCCCGACCACAGCCATAT 62.330 60.000 0.00 0.00 0.00 1.78
261 271 1.598130 GCCCGACCACAGCCATATC 60.598 63.158 0.00 0.00 0.00 1.63
262 272 1.829456 CCCGACCACAGCCATATCA 59.171 57.895 0.00 0.00 0.00 2.15
263 273 0.397941 CCCGACCACAGCCATATCAT 59.602 55.000 0.00 0.00 0.00 2.45
288 302 0.460987 CCAGCTAGGAAAGACAGGCG 60.461 60.000 0.00 0.00 41.22 5.52
333 347 6.349363 CCATCATAGATGATTGAGCAACATGG 60.349 42.308 8.49 0.00 44.70 3.66
334 348 5.687780 TCATAGATGATTGAGCAACATGGT 58.312 37.500 0.00 0.00 0.00 3.55
351 365 3.281727 TGGTCTTGGCATAATCTGGAC 57.718 47.619 0.00 0.00 0.00 4.02
356 370 0.106708 TGGCATAATCTGGACGGAGC 59.893 55.000 0.00 0.00 0.00 4.70
358 372 0.249489 GCATAATCTGGACGGAGCGT 60.249 55.000 0.00 0.00 45.10 5.07
359 373 1.000607 GCATAATCTGGACGGAGCGTA 60.001 52.381 0.00 0.00 41.37 4.42
409 423 2.147958 GGAACAACCTACGCAATCACA 58.852 47.619 0.00 0.00 35.41 3.58
416 430 0.172578 CTACGCAATCACACTCCCGA 59.827 55.000 0.00 0.00 0.00 5.14
423 615 0.036388 ATCACACTCCCGAATGCGTT 60.036 50.000 0.00 0.00 35.23 4.84
507 705 2.904866 CTCTCGCCTCCCTCTCCG 60.905 72.222 0.00 0.00 0.00 4.63
508 706 3.408099 CTCTCGCCTCCCTCTCCGA 62.408 68.421 0.00 0.00 0.00 4.55
509 707 2.904866 CTCGCCTCCCTCTCCGAG 60.905 72.222 0.00 0.00 40.76 4.63
572 779 1.689582 CCCGGAAAGCCCTAGGTCT 60.690 63.158 0.73 0.00 0.00 3.85
626 859 1.523154 GCCCCGAAACACAATGCAGA 61.523 55.000 0.00 0.00 0.00 4.26
634 867 0.904649 ACACAATGCAGATCGGAGGA 59.095 50.000 0.00 0.00 0.00 3.71
635 868 1.134580 ACACAATGCAGATCGGAGGAG 60.135 52.381 0.00 0.00 0.00 3.69
638 871 1.047002 AATGCAGATCGGAGGAGGAG 58.953 55.000 0.00 0.00 0.00 3.69
639 872 0.105760 ATGCAGATCGGAGGAGGAGT 60.106 55.000 0.00 0.00 0.00 3.85
640 873 0.753479 TGCAGATCGGAGGAGGAGTC 60.753 60.000 0.00 0.00 0.00 3.36
641 874 1.791103 GCAGATCGGAGGAGGAGTCG 61.791 65.000 0.00 0.00 0.00 4.18
642 875 0.179043 CAGATCGGAGGAGGAGTCGA 60.179 60.000 0.00 0.00 36.07 4.20
643 876 0.107831 AGATCGGAGGAGGAGTCGAG 59.892 60.000 0.00 0.00 35.07 4.04
644 877 0.887387 GATCGGAGGAGGAGTCGAGG 60.887 65.000 0.00 0.00 35.07 4.63
645 878 1.346479 ATCGGAGGAGGAGTCGAGGA 61.346 60.000 0.00 0.00 35.07 3.71
646 879 1.525077 CGGAGGAGGAGTCGAGGAG 60.525 68.421 0.00 0.00 0.00 3.69
647 880 1.152839 GGAGGAGGAGTCGAGGAGG 60.153 68.421 0.00 0.00 0.00 4.30
648 881 1.826487 GAGGAGGAGTCGAGGAGGC 60.826 68.421 0.00 0.00 0.00 4.70
842 1079 0.746923 GAATCTTAAAGCGGGCCCGT 60.747 55.000 42.53 27.40 42.09 5.28
882 1119 3.061260 GCCTCGTACGGTCTGGTCC 62.061 68.421 16.52 0.00 0.00 4.46
1154 1405 2.587322 TAAGCGCCCAGACCAATCCG 62.587 60.000 2.29 0.00 0.00 4.18
1201 1464 6.197842 GCTGGAATTTTTCAGATTAGCAATCG 59.802 38.462 2.68 0.00 42.75 3.34
1210 1473 3.941483 CAGATTAGCAATCGGTTCCTTGT 59.059 43.478 0.00 0.00 42.75 3.16
1215 1478 1.522668 CAATCGGTTCCTTGTGCTCA 58.477 50.000 0.00 0.00 0.00 4.26
1289 1552 1.896122 GACCCCATTCCGGAACTCGT 61.896 60.000 21.56 13.21 36.56 4.18
1330 1593 1.509004 GAGAGACGACAGGAGGCAC 59.491 63.158 0.00 0.00 0.00 5.01
1431 1694 3.121030 CTTGCAGGACGCGAAGGG 61.121 66.667 15.93 0.00 46.97 3.95
1607 1870 5.808366 TCAGGTTCTTGTCTTCTACACAT 57.192 39.130 0.00 0.00 38.00 3.21
1610 1873 6.266786 TCAGGTTCTTGTCTTCTACACATACA 59.733 38.462 0.00 0.00 38.00 2.29
1611 1874 6.366332 CAGGTTCTTGTCTTCTACACATACAC 59.634 42.308 0.00 0.00 38.00 2.90
1624 1888 1.086696 CATACACGTGCAGAAAGGGG 58.913 55.000 17.22 0.00 0.00 4.79
1627 1891 0.818040 ACACGTGCAGAAAGGGGTTC 60.818 55.000 17.22 0.00 36.38 3.62
1664 1928 4.144297 TGTTCTATGCTTTCAGTGGCTTT 58.856 39.130 0.00 0.00 0.00 3.51
1682 1946 4.274865 GCTTTGATAGCTGTTAACGATGC 58.725 43.478 0.00 5.61 46.77 3.91
1683 1947 4.201812 GCTTTGATAGCTGTTAACGATGCA 60.202 41.667 16.51 0.00 46.77 3.96
1692 1956 6.338146 AGCTGTTAACGATGCACTTAATAGA 58.662 36.000 16.51 0.00 0.00 1.98
1696 1960 7.094631 TGTTAACGATGCACTTAATAGACAGT 58.905 34.615 0.26 0.00 0.00 3.55
1711 1975 1.038130 ACAGTTAGAGGATCGCGGCT 61.038 55.000 6.13 0.00 42.67 5.52
1723 1987 1.514003 TCGCGGCTTGAATGTTTACA 58.486 45.000 6.13 0.00 0.00 2.41
1734 1998 4.650734 TGAATGTTTACATGTGCTGGAGA 58.349 39.130 9.11 0.00 36.56 3.71
1876 2141 6.482973 CAGCCCATTTTGTTCTGTATTTGTTT 59.517 34.615 0.00 0.00 0.00 2.83
1877 2142 6.482973 AGCCCATTTTGTTCTGTATTTGTTTG 59.517 34.615 0.00 0.00 0.00 2.93
1878 2143 6.259829 GCCCATTTTGTTCTGTATTTGTTTGT 59.740 34.615 0.00 0.00 0.00 2.83
1879 2144 7.201688 GCCCATTTTGTTCTGTATTTGTTTGTT 60.202 33.333 0.00 0.00 0.00 2.83
1882 2147 9.687717 CATTTTGTTCTGTATTTGTTTGTTCAC 57.312 29.630 0.00 0.00 0.00 3.18
1884 2149 7.804614 TTGTTCTGTATTTGTTTGTTCACAC 57.195 32.000 0.00 0.00 0.00 3.82
1885 2150 6.914259 TGTTCTGTATTTGTTTGTTCACACA 58.086 32.000 0.00 0.00 0.00 3.72
1887 2152 8.031864 TGTTCTGTATTTGTTTGTTCACACATT 58.968 29.630 0.00 0.00 31.06 2.71
1888 2153 7.984002 TCTGTATTTGTTTGTTCACACATTG 57.016 32.000 0.00 0.00 31.06 2.82
1889 2154 7.766283 TCTGTATTTGTTTGTTCACACATTGA 58.234 30.769 0.00 0.00 31.06 2.57
1890 2155 8.412456 TCTGTATTTGTTTGTTCACACATTGAT 58.588 29.630 0.00 0.00 32.84 2.57
1891 2156 9.676195 CTGTATTTGTTTGTTCACACATTGATA 57.324 29.630 0.00 0.00 32.84 2.15
2334 2600 6.544928 TGATCAACAAGAGCCTCAAGTATA 57.455 37.500 0.00 0.00 0.00 1.47
3329 3602 3.706086 GGGATATTGGCCAAGTCAAATGT 59.294 43.478 24.94 6.76 28.60 2.71
3422 3695 2.892852 CAAGCTGTTCAATGGGGAGAAA 59.107 45.455 0.00 0.00 0.00 2.52
3587 3860 1.192146 TGTGGAAAGGTCTCGGGGAG 61.192 60.000 0.00 0.00 0.00 4.30
3660 3933 4.079901 ACAAGATGCCAGAAGAATGGAGAT 60.080 41.667 0.00 0.00 43.57 2.75
3830 4103 1.962807 CAGTTTGGTTTCATGCCTGGA 59.037 47.619 0.00 0.00 0.00 3.86
3987 4260 2.952310 GCCTTGGAGAAACACAAAGTCT 59.048 45.455 0.00 0.00 0.00 3.24
5037 6955 1.206878 TGCTATCCATGTGCCAGAGT 58.793 50.000 0.00 0.00 0.00 3.24
5122 7040 2.971307 AGGCTTTGTTGTTGTTGTTGG 58.029 42.857 0.00 0.00 0.00 3.77
5123 7041 2.301583 AGGCTTTGTTGTTGTTGTTGGT 59.698 40.909 0.00 0.00 0.00 3.67
5124 7042 2.670905 GGCTTTGTTGTTGTTGTTGGTC 59.329 45.455 0.00 0.00 0.00 4.02
5125 7043 2.670905 GCTTTGTTGTTGTTGTTGGTCC 59.329 45.455 0.00 0.00 0.00 4.46
5126 7044 3.862642 GCTTTGTTGTTGTTGTTGGTCCA 60.863 43.478 0.00 0.00 0.00 4.02
5127 7045 3.305398 TTGTTGTTGTTGTTGGTCCAC 57.695 42.857 0.00 0.00 0.00 4.02
5128 7046 2.239400 TGTTGTTGTTGTTGGTCCACA 58.761 42.857 0.00 0.00 0.00 4.17
5129 7047 2.628178 TGTTGTTGTTGTTGGTCCACAA 59.372 40.909 0.00 0.00 36.54 3.33
5130 7048 3.249917 GTTGTTGTTGTTGGTCCACAAG 58.750 45.455 7.02 0.00 40.38 3.16
5131 7049 2.796557 TGTTGTTGTTGGTCCACAAGA 58.203 42.857 7.02 4.24 40.38 3.02
5132 7050 2.490115 TGTTGTTGTTGGTCCACAAGAC 59.510 45.455 7.02 9.05 45.51 3.01
5141 7059 1.317613 GTCCACAAGACCACAATGCA 58.682 50.000 0.00 0.00 39.84 3.96
5142 7060 1.680735 GTCCACAAGACCACAATGCAA 59.319 47.619 0.00 0.00 39.84 4.08
5143 7061 1.955778 TCCACAAGACCACAATGCAAG 59.044 47.619 0.00 0.00 0.00 4.01
5238 7156 7.201461 GGCAGTGCTAAAATTTTCATGTATGTG 60.201 37.037 16.11 3.20 0.00 3.21
5262 7180 7.334421 GTGTTCACATATACTGATGGTCAAACT 59.666 37.037 0.00 0.00 0.00 2.66
5263 7181 7.882791 TGTTCACATATACTGATGGTCAAACTT 59.117 33.333 0.00 0.00 0.00 2.66
5264 7182 8.391106 GTTCACATATACTGATGGTCAAACTTC 58.609 37.037 0.00 0.00 0.00 3.01
5324 7242 3.278668 TTAGAGACGGAGGGAGTACTG 57.721 52.381 0.00 0.00 0.00 2.74
5431 7424 3.596214 TGCTCTCCCATAACGTTTTCTC 58.404 45.455 5.91 0.00 0.00 2.87
5607 7600 3.068448 TGCTGTTACGGAACTAGTTGTGA 59.932 43.478 14.14 0.00 36.45 3.58
6071 8068 0.947244 CAAGTTGCAGGAAGACGCTT 59.053 50.000 0.00 0.00 0.00 4.68
6199 8196 3.011517 CCTGGGTGGACCTCTGGG 61.012 72.222 0.00 0.00 41.11 4.45
6284 8281 4.079787 CCAGGAGGGGATTTTCTGATTACA 60.080 45.833 0.00 0.00 0.00 2.41
6287 8284 4.464947 GAGGGGATTTTCTGATTACAGGG 58.535 47.826 0.00 0.00 43.60 4.45
6442 8439 6.587608 CAGAAAAATGGAAGCATGACCTTTAC 59.412 38.462 0.00 0.00 0.00 2.01
6565 8568 4.246458 GAGGCGATGGGTAAATGATAGTC 58.754 47.826 0.00 0.00 0.00 2.59
6609 8612 1.004044 CTCTGGAGCTGTTTGGGATGT 59.996 52.381 0.00 0.00 0.00 3.06
6644 8647 7.336679 TCATGTACTTGGTCTCATTGTTATTGG 59.663 37.037 8.74 0.00 0.00 3.16
6739 8742 1.532868 CCCTTTGAAGTGAAGCGTCTG 59.467 52.381 0.31 0.00 0.00 3.51
6755 8758 8.680001 TGAAGCGTCTGTACTAAATAGTATCAA 58.320 33.333 0.31 0.00 40.55 2.57
6756 8759 9.680315 GAAGCGTCTGTACTAAATAGTATCAAT 57.320 33.333 3.78 0.00 40.55 2.57
6757 8760 9.680315 AAGCGTCTGTACTAAATAGTATCAATC 57.320 33.333 3.78 0.00 40.55 2.67
6758 8761 8.016229 AGCGTCTGTACTAAATAGTATCAATCG 58.984 37.037 3.78 10.46 40.55 3.34
6886 8889 3.334583 TCCACTGAACAAGTATGCTCC 57.665 47.619 0.00 0.00 36.83 4.70
6894 8897 7.549134 CACTGAACAAGTATGCTCCTTAACATA 59.451 37.037 0.00 0.00 36.83 2.29
7028 9408 2.743664 TGGTTTGATGATCTGTCGCAAG 59.256 45.455 0.00 0.00 0.00 4.01
7076 9457 1.256812 GCCCTGCTAGAAGGCAAAAA 58.743 50.000 11.93 0.00 46.34 1.94
7095 9476 8.868103 GGCAAAAATACCTAGTATACTCTACCT 58.132 37.037 9.12 0.00 0.00 3.08
7122 9503 4.922206 AGCTTGGTTTGATGATCACCTAA 58.078 39.130 0.00 0.00 0.00 2.69
7130 9511 8.088365 TGGTTTGATGATCACCTAATATACTCG 58.912 37.037 0.00 0.00 0.00 4.18
7154 9535 2.743195 TTTTTGGTGTTGTGTGCGC 58.257 47.368 0.00 0.00 0.00 6.09
7161 9542 0.030638 GTGTTGTGTGCGCCTCAATT 59.969 50.000 4.18 0.00 0.00 2.32
7202 9583 2.260869 GCCTTGCGCCTCAAACTGA 61.261 57.895 4.18 0.00 33.65 3.41
7203 9584 1.871772 CCTTGCGCCTCAAACTGAG 59.128 57.895 4.18 0.00 43.91 3.35
7223 9604 1.170290 AGGGCAACGCACCAAGTTAC 61.170 55.000 0.00 0.00 28.43 2.50
7224 9605 1.170290 GGGCAACGCACCAAGTTACT 61.170 55.000 0.00 0.00 37.60 2.24
7225 9606 0.237498 GGCAACGCACCAAGTTACTC 59.763 55.000 0.00 0.00 0.00 2.59
7226 9607 0.237498 GCAACGCACCAAGTTACTCC 59.763 55.000 0.00 0.00 0.00 3.85
7227 9608 0.872388 CAACGCACCAAGTTACTCCC 59.128 55.000 0.00 0.00 0.00 4.30
7228 9609 0.763035 AACGCACCAAGTTACTCCCT 59.237 50.000 0.00 0.00 0.00 4.20
7229 9610 0.320697 ACGCACCAAGTTACTCCCTC 59.679 55.000 0.00 0.00 0.00 4.30
7230 9611 0.391263 CGCACCAAGTTACTCCCTCC 60.391 60.000 0.00 0.00 0.00 4.30
7231 9612 0.391263 GCACCAAGTTACTCCCTCCG 60.391 60.000 0.00 0.00 0.00 4.63
7232 9613 0.974383 CACCAAGTTACTCCCTCCGT 59.026 55.000 0.00 0.00 0.00 4.69
7233 9614 1.346722 CACCAAGTTACTCCCTCCGTT 59.653 52.381 0.00 0.00 0.00 4.44
7234 9615 1.622312 ACCAAGTTACTCCCTCCGTTC 59.378 52.381 0.00 0.00 0.00 3.95
7235 9616 1.066358 CCAAGTTACTCCCTCCGTTCC 60.066 57.143 0.00 0.00 0.00 3.62
7236 9617 1.621814 CAAGTTACTCCCTCCGTTCCA 59.378 52.381 0.00 0.00 0.00 3.53
7237 9618 2.019807 AGTTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
7238 9619 2.332117 AGTTACTCCCTCCGTTCCAAA 58.668 47.619 0.00 0.00 0.00 3.28
7239 9620 2.707257 AGTTACTCCCTCCGTTCCAAAA 59.293 45.455 0.00 0.00 0.00 2.44
7240 9621 3.329814 AGTTACTCCCTCCGTTCCAAAAT 59.670 43.478 0.00 0.00 0.00 1.82
7241 9622 4.533311 AGTTACTCCCTCCGTTCCAAAATA 59.467 41.667 0.00 0.00 0.00 1.40
7242 9623 5.013391 AGTTACTCCCTCCGTTCCAAAATAA 59.987 40.000 0.00 0.00 0.00 1.40
7243 9624 4.376225 ACTCCCTCCGTTCCAAAATAAA 57.624 40.909 0.00 0.00 0.00 1.40
7244 9625 4.930696 ACTCCCTCCGTTCCAAAATAAAT 58.069 39.130 0.00 0.00 0.00 1.40
7245 9626 4.705023 ACTCCCTCCGTTCCAAAATAAATG 59.295 41.667 0.00 0.00 0.00 2.32
7246 9627 4.924625 TCCCTCCGTTCCAAAATAAATGA 58.075 39.130 0.00 0.00 0.00 2.57
7247 9628 4.703093 TCCCTCCGTTCCAAAATAAATGAC 59.297 41.667 0.00 0.00 0.00 3.06
7248 9629 4.142249 CCCTCCGTTCCAAAATAAATGACC 60.142 45.833 0.00 0.00 0.00 4.02
7249 9630 4.142249 CCTCCGTTCCAAAATAAATGACCC 60.142 45.833 0.00 0.00 0.00 4.46
7250 9631 4.668636 TCCGTTCCAAAATAAATGACCCT 58.331 39.130 0.00 0.00 0.00 4.34
7251 9632 5.817784 TCCGTTCCAAAATAAATGACCCTA 58.182 37.500 0.00 0.00 0.00 3.53
7252 9633 5.648960 TCCGTTCCAAAATAAATGACCCTAC 59.351 40.000 0.00 0.00 0.00 3.18
7253 9634 5.650703 CCGTTCCAAAATAAATGACCCTACT 59.349 40.000 0.00 0.00 0.00 2.57
7254 9635 6.152154 CCGTTCCAAAATAAATGACCCTACTT 59.848 38.462 0.00 0.00 0.00 2.24
7255 9636 7.309560 CCGTTCCAAAATAAATGACCCTACTTT 60.310 37.037 0.00 0.00 0.00 2.66
7256 9637 7.540745 CGTTCCAAAATAAATGACCCTACTTTG 59.459 37.037 0.00 0.00 0.00 2.77
7257 9638 8.364894 GTTCCAAAATAAATGACCCTACTTTGT 58.635 33.333 0.00 0.00 0.00 2.83
7258 9639 9.589461 TTCCAAAATAAATGACCCTACTTTGTA 57.411 29.630 0.00 0.00 0.00 2.41
7259 9640 9.016438 TCCAAAATAAATGACCCTACTTTGTAC 57.984 33.333 0.00 0.00 0.00 2.90
7260 9641 9.020731 CCAAAATAAATGACCCTACTTTGTACT 57.979 33.333 0.00 0.00 0.00 2.73
7298 9679 9.855021 AAAATTAAGTCATCTATTTTGGAACGG 57.145 29.630 0.00 0.00 31.14 4.44
7299 9680 8.801882 AATTAAGTCATCTATTTTGGAACGGA 57.198 30.769 0.00 0.00 0.00 4.69
7300 9681 7.843490 TTAAGTCATCTATTTTGGAACGGAG 57.157 36.000 0.00 0.00 0.00 4.63
7301 9682 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
7302 9683 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
7303 9684 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
7304 9685 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
7305 9686 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
7306 9687 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
7307 9688 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
7308 9689 6.138263 TCTATTTTGGAACGGAGGGAGTATA 58.862 40.000 0.00 0.00 0.00 1.47
7309 9690 5.703730 ATTTTGGAACGGAGGGAGTATAA 57.296 39.130 0.00 0.00 0.00 0.98
7310 9691 4.476628 TTTGGAACGGAGGGAGTATAAC 57.523 45.455 0.00 0.00 0.00 1.89
7311 9692 2.026641 TGGAACGGAGGGAGTATAACG 58.973 52.381 0.00 0.00 0.00 3.18
7312 9693 1.269465 GGAACGGAGGGAGTATAACGC 60.269 57.143 0.00 0.00 0.00 4.84
7313 9694 1.406539 GAACGGAGGGAGTATAACGCA 59.593 52.381 0.00 0.00 0.00 5.24
7314 9695 1.477553 ACGGAGGGAGTATAACGCAA 58.522 50.000 0.00 0.00 0.00 4.85
7315 9696 1.135721 ACGGAGGGAGTATAACGCAAC 59.864 52.381 0.00 0.00 0.00 4.17
7316 9697 1.135527 CGGAGGGAGTATAACGCAACA 59.864 52.381 0.00 0.00 0.00 3.33
7317 9698 2.223971 CGGAGGGAGTATAACGCAACAT 60.224 50.000 0.00 0.00 0.00 2.71
7318 9699 3.740141 CGGAGGGAGTATAACGCAACATT 60.740 47.826 0.00 0.00 0.00 2.71
7319 9700 3.808174 GGAGGGAGTATAACGCAACATTC 59.192 47.826 0.00 0.00 0.00 2.67
7320 9701 4.443034 GGAGGGAGTATAACGCAACATTCT 60.443 45.833 0.00 0.00 0.00 2.40
7321 9702 5.221382 GGAGGGAGTATAACGCAACATTCTA 60.221 44.000 0.00 0.00 0.00 2.10
7322 9703 6.229936 AGGGAGTATAACGCAACATTCTAA 57.770 37.500 0.00 0.00 0.00 2.10
7323 9704 6.047231 AGGGAGTATAACGCAACATTCTAAC 58.953 40.000 0.00 0.00 0.00 2.34
7324 9705 5.813672 GGGAGTATAACGCAACATTCTAACA 59.186 40.000 0.00 0.00 0.00 2.41
7325 9706 6.018994 GGGAGTATAACGCAACATTCTAACAG 60.019 42.308 0.00 0.00 0.00 3.16
7326 9707 6.345920 AGTATAACGCAACATTCTAACAGC 57.654 37.500 0.00 0.00 0.00 4.40
7327 9708 5.872617 AGTATAACGCAACATTCTAACAGCA 59.127 36.000 0.00 0.00 0.00 4.41
7328 9709 2.969443 ACGCAACATTCTAACAGCAC 57.031 45.000 0.00 0.00 0.00 4.40
7329 9710 1.535462 ACGCAACATTCTAACAGCACC 59.465 47.619 0.00 0.00 0.00 5.01
7330 9711 1.535028 CGCAACATTCTAACAGCACCA 59.465 47.619 0.00 0.00 0.00 4.17
7331 9712 2.031245 CGCAACATTCTAACAGCACCAA 60.031 45.455 0.00 0.00 0.00 3.67
7332 9713 3.568538 GCAACATTCTAACAGCACCAAG 58.431 45.455 0.00 0.00 0.00 3.61
7333 9714 3.612479 GCAACATTCTAACAGCACCAAGG 60.612 47.826 0.00 0.00 0.00 3.61
7334 9715 3.508845 ACATTCTAACAGCACCAAGGT 57.491 42.857 0.00 0.00 0.00 3.50
7335 9716 4.634012 ACATTCTAACAGCACCAAGGTA 57.366 40.909 0.00 0.00 0.00 3.08
7336 9717 5.179452 ACATTCTAACAGCACCAAGGTAT 57.821 39.130 0.00 0.00 0.00 2.73
7337 9718 6.308015 ACATTCTAACAGCACCAAGGTATA 57.692 37.500 0.00 0.00 0.00 1.47
7338 9719 6.717289 ACATTCTAACAGCACCAAGGTATAA 58.283 36.000 0.00 0.00 0.00 0.98
7339 9720 7.172342 ACATTCTAACAGCACCAAGGTATAAA 58.828 34.615 0.00 0.00 0.00 1.40
7340 9721 7.336931 ACATTCTAACAGCACCAAGGTATAAAG 59.663 37.037 0.00 0.00 0.00 1.85
7341 9722 6.368779 TCTAACAGCACCAAGGTATAAAGT 57.631 37.500 0.00 0.00 0.00 2.66
7342 9723 7.484993 TCTAACAGCACCAAGGTATAAAGTA 57.515 36.000 0.00 0.00 0.00 2.24
7343 9724 7.909518 TCTAACAGCACCAAGGTATAAAGTAA 58.090 34.615 0.00 0.00 0.00 2.24
7344 9725 6.812879 AACAGCACCAAGGTATAAAGTAAC 57.187 37.500 0.00 0.00 0.00 2.50
7345 9726 5.871834 ACAGCACCAAGGTATAAAGTAACA 58.128 37.500 0.00 0.00 0.00 2.41
7346 9727 5.704053 ACAGCACCAAGGTATAAAGTAACAC 59.296 40.000 0.00 0.00 0.00 3.32
7347 9728 5.938125 CAGCACCAAGGTATAAAGTAACACT 59.062 40.000 0.00 0.00 0.00 3.55
7348 9729 6.092259 CAGCACCAAGGTATAAAGTAACACTC 59.908 42.308 0.00 0.00 0.00 3.51
7349 9730 5.353400 GCACCAAGGTATAAAGTAACACTCC 59.647 44.000 0.00 0.00 0.00 3.85
7350 9731 6.469410 CACCAAGGTATAAAGTAACACTCCA 58.531 40.000 0.00 0.00 0.00 3.86
7351 9732 6.938030 CACCAAGGTATAAAGTAACACTCCAA 59.062 38.462 0.00 0.00 0.00 3.53
7352 9733 6.938596 ACCAAGGTATAAAGTAACACTCCAAC 59.061 38.462 0.00 0.00 0.00 3.77
7353 9734 6.938030 CCAAGGTATAAAGTAACACTCCAACA 59.062 38.462 0.00 0.00 0.00 3.33
7354 9735 7.119262 CCAAGGTATAAAGTAACACTCCAACAG 59.881 40.741 0.00 0.00 0.00 3.16
7355 9736 6.171213 AGGTATAAAGTAACACTCCAACAGC 58.829 40.000 0.00 0.00 0.00 4.40
7356 9737 6.013639 AGGTATAAAGTAACACTCCAACAGCT 60.014 38.462 0.00 0.00 0.00 4.24
7357 9738 6.653740 GGTATAAAGTAACACTCCAACAGCTT 59.346 38.462 0.00 0.00 0.00 3.74
7358 9739 4.900635 AAAGTAACACTCCAACAGCTTG 57.099 40.909 0.00 0.00 0.00 4.01
7360 9741 1.266989 GTAACACTCCAACAGCTTGGC 59.733 52.381 0.00 0.00 46.15 4.52
7361 9742 0.395586 AACACTCCAACAGCTTGGCA 60.396 50.000 0.00 0.00 46.15 4.92
7362 9743 0.820891 ACACTCCAACAGCTTGGCAG 60.821 55.000 0.00 1.82 46.15 4.85
7363 9744 0.535780 CACTCCAACAGCTTGGCAGA 60.536 55.000 0.00 0.00 46.15 4.26
7364 9745 0.250640 ACTCCAACAGCTTGGCAGAG 60.251 55.000 0.00 0.00 46.15 3.35
7365 9746 0.035881 CTCCAACAGCTTGGCAGAGA 59.964 55.000 0.00 0.00 46.15 3.10
7366 9747 0.473755 TCCAACAGCTTGGCAGAGAA 59.526 50.000 0.00 0.00 46.15 2.87
7367 9748 1.074405 TCCAACAGCTTGGCAGAGAAT 59.926 47.619 0.00 0.00 46.15 2.40
7368 9749 1.201647 CCAACAGCTTGGCAGAGAATG 59.798 52.381 0.00 0.00 40.79 2.67
7369 9750 2.156917 CAACAGCTTGGCAGAGAATGA 58.843 47.619 0.00 0.00 0.00 2.57
7370 9751 2.110901 ACAGCTTGGCAGAGAATGAG 57.889 50.000 0.00 0.00 0.00 2.90
7371 9752 1.627329 ACAGCTTGGCAGAGAATGAGA 59.373 47.619 0.00 0.00 0.00 3.27
7372 9753 2.039480 ACAGCTTGGCAGAGAATGAGAA 59.961 45.455 0.00 0.00 0.00 2.87
7373 9754 3.280295 CAGCTTGGCAGAGAATGAGAAT 58.720 45.455 0.00 0.00 0.00 2.40
7374 9755 3.695060 CAGCTTGGCAGAGAATGAGAATT 59.305 43.478 0.00 0.00 0.00 2.17
7375 9756 3.946558 AGCTTGGCAGAGAATGAGAATTC 59.053 43.478 0.00 0.00 0.00 2.17
7376 9757 3.242673 GCTTGGCAGAGAATGAGAATTCG 60.243 47.826 0.00 0.00 35.78 3.34
7377 9758 3.893326 TGGCAGAGAATGAGAATTCGA 57.107 42.857 0.00 0.00 35.78 3.71
7378 9759 4.206477 TGGCAGAGAATGAGAATTCGAA 57.794 40.909 0.00 0.00 35.78 3.71
7379 9760 4.186926 TGGCAGAGAATGAGAATTCGAAG 58.813 43.478 3.35 0.00 35.78 3.79
7380 9761 4.081476 TGGCAGAGAATGAGAATTCGAAGA 60.081 41.667 3.35 0.00 35.78 2.87
7381 9762 4.872691 GGCAGAGAATGAGAATTCGAAGAA 59.127 41.667 3.35 0.00 45.90 2.52
7382 9763 5.526846 GGCAGAGAATGAGAATTCGAAGAAT 59.473 40.000 3.35 0.00 45.90 2.40
7383 9764 6.703607 GGCAGAGAATGAGAATTCGAAGAATA 59.296 38.462 3.35 0.00 45.90 1.75
7384 9765 7.307101 GGCAGAGAATGAGAATTCGAAGAATAC 60.307 40.741 3.35 0.00 45.90 1.89
7385 9766 7.566688 GCAGAGAATGAGAATTCGAAGAATACG 60.567 40.741 3.35 0.00 45.90 3.06
7386 9767 6.920758 AGAGAATGAGAATTCGAAGAATACGG 59.079 38.462 3.35 0.00 45.90 4.02
7387 9768 5.986135 AGAATGAGAATTCGAAGAATACGGG 59.014 40.000 3.35 0.00 45.90 5.28
7388 9769 4.994907 TGAGAATTCGAAGAATACGGGA 57.005 40.909 3.35 0.00 45.90 5.14
7389 9770 4.679662 TGAGAATTCGAAGAATACGGGAC 58.320 43.478 3.35 0.00 45.90 4.46
7390 9771 4.158949 TGAGAATTCGAAGAATACGGGACA 59.841 41.667 3.35 0.00 45.90 4.02
7391 9772 5.163447 TGAGAATTCGAAGAATACGGGACAT 60.163 40.000 3.35 0.00 45.90 3.06
7392 9773 6.040054 TGAGAATTCGAAGAATACGGGACATA 59.960 38.462 3.35 0.00 45.90 2.29
7393 9774 6.812998 AGAATTCGAAGAATACGGGACATAA 58.187 36.000 3.35 0.00 45.90 1.90
7394 9775 7.442656 AGAATTCGAAGAATACGGGACATAAT 58.557 34.615 3.35 0.00 45.90 1.28
7395 9776 7.599245 AGAATTCGAAGAATACGGGACATAATC 59.401 37.037 3.35 0.00 45.90 1.75
7396 9777 5.535333 TTCGAAGAATACGGGACATAATCC 58.465 41.667 0.00 0.00 45.52 3.01
7410 9791 5.418676 GACATAATCCATTGTTTGGTTGGG 58.581 41.667 0.00 0.00 46.52 4.12
7411 9792 4.224818 ACATAATCCATTGTTTGGTTGGGG 59.775 41.667 0.00 0.00 46.52 4.96
7412 9793 1.655372 ATCCATTGTTTGGTTGGGGG 58.345 50.000 0.00 0.00 46.52 5.40
7413 9794 0.266152 TCCATTGTTTGGTTGGGGGT 59.734 50.000 0.00 0.00 46.52 4.95
7414 9795 0.396060 CCATTGTTTGGTTGGGGGTG 59.604 55.000 0.00 0.00 40.99 4.61
7415 9796 0.396060 CATTGTTTGGTTGGGGGTGG 59.604 55.000 0.00 0.00 0.00 4.61
7416 9797 0.766288 ATTGTTTGGTTGGGGGTGGG 60.766 55.000 0.00 0.00 0.00 4.61
7417 9798 2.525629 GTTTGGTTGGGGGTGGGG 60.526 66.667 0.00 0.00 0.00 4.96
7418 9799 3.851184 TTTGGTTGGGGGTGGGGG 61.851 66.667 0.00 0.00 0.00 5.40
7432 9813 4.362479 GGGGGCAAGGGAATTCAG 57.638 61.111 7.93 0.00 0.00 3.02
7433 9814 1.381735 GGGGGCAAGGGAATTCAGG 60.382 63.158 7.93 0.00 0.00 3.86
7434 9815 1.697297 GGGGCAAGGGAATTCAGGA 59.303 57.895 7.93 0.00 0.00 3.86
7435 9816 0.041090 GGGGCAAGGGAATTCAGGAA 59.959 55.000 7.93 0.00 0.00 3.36
7436 9817 1.552254 GGGGCAAGGGAATTCAGGAAA 60.552 52.381 7.93 0.00 0.00 3.13
7437 9818 1.827344 GGGCAAGGGAATTCAGGAAAG 59.173 52.381 7.93 0.00 0.00 2.62
7438 9819 2.557452 GGGCAAGGGAATTCAGGAAAGA 60.557 50.000 7.93 0.00 0.00 2.52
7439 9820 3.165071 GGCAAGGGAATTCAGGAAAGAA 58.835 45.455 7.93 0.00 0.00 2.52
7440 9821 3.771479 GGCAAGGGAATTCAGGAAAGAAT 59.229 43.478 7.93 0.00 39.81 2.40
7441 9822 4.382362 GGCAAGGGAATTCAGGAAAGAATG 60.382 45.833 7.93 0.00 38.21 2.67
7442 9823 4.382362 GCAAGGGAATTCAGGAAAGAATGG 60.382 45.833 7.93 0.00 38.21 3.16
7443 9824 3.986435 AGGGAATTCAGGAAAGAATGGG 58.014 45.455 7.93 0.00 38.21 4.00
7444 9825 3.597868 AGGGAATTCAGGAAAGAATGGGA 59.402 43.478 7.93 0.00 38.21 4.37
7445 9826 4.045846 AGGGAATTCAGGAAAGAATGGGAA 59.954 41.667 7.93 0.00 38.21 3.97
7446 9827 4.777366 GGGAATTCAGGAAAGAATGGGAAA 59.223 41.667 7.93 0.00 38.21 3.13
7447 9828 5.426509 GGGAATTCAGGAAAGAATGGGAAAT 59.573 40.000 7.93 0.00 38.21 2.17
7448 9829 6.070021 GGGAATTCAGGAAAGAATGGGAAATT 60.070 38.462 7.93 0.00 38.21 1.82
7449 9830 6.820152 GGAATTCAGGAAAGAATGGGAAATTG 59.180 38.462 7.93 0.00 38.21 2.32
7450 9831 7.310609 GGAATTCAGGAAAGAATGGGAAATTGA 60.311 37.037 7.93 0.00 38.21 2.57
7451 9832 6.992664 TTCAGGAAAGAATGGGAAATTGAA 57.007 33.333 0.00 0.00 0.00 2.69
7452 9833 7.557875 TTCAGGAAAGAATGGGAAATTGAAT 57.442 32.000 0.00 0.00 0.00 2.57
7453 9834 7.557875 TCAGGAAAGAATGGGAAATTGAATT 57.442 32.000 0.00 0.00 0.00 2.17
7454 9835 8.663209 TCAGGAAAGAATGGGAAATTGAATTA 57.337 30.769 0.00 0.00 0.00 1.40
7455 9836 9.099071 TCAGGAAAGAATGGGAAATTGAATTAA 57.901 29.630 0.00 0.00 0.00 1.40
7456 9837 9.374838 CAGGAAAGAATGGGAAATTGAATTAAG 57.625 33.333 0.00 0.00 0.00 1.85
7457 9838 9.325248 AGGAAAGAATGGGAAATTGAATTAAGA 57.675 29.630 0.00 0.00 0.00 2.10
7458 9839 9.942850 GGAAAGAATGGGAAATTGAATTAAGAA 57.057 29.630 0.00 0.00 0.00 2.52
7480 9861 8.371770 AGAAAAATCTTATGTATCTCTTCCGC 57.628 34.615 0.00 0.00 0.00 5.54
7481 9862 7.987458 AGAAAAATCTTATGTATCTCTTCCGCA 59.013 33.333 0.00 0.00 0.00 5.69
7482 9863 7.484035 AAAATCTTATGTATCTCTTCCGCAC 57.516 36.000 0.00 0.00 0.00 5.34
7483 9864 4.585955 TCTTATGTATCTCTTCCGCACC 57.414 45.455 0.00 0.00 0.00 5.01
7484 9865 3.321111 TCTTATGTATCTCTTCCGCACCC 59.679 47.826 0.00 0.00 0.00 4.61
7485 9866 0.759346 ATGTATCTCTTCCGCACCCC 59.241 55.000 0.00 0.00 0.00 4.95
7486 9867 0.325296 TGTATCTCTTCCGCACCCCT 60.325 55.000 0.00 0.00 0.00 4.79
7487 9868 0.389757 GTATCTCTTCCGCACCCCTC 59.610 60.000 0.00 0.00 0.00 4.30
7488 9869 0.261991 TATCTCTTCCGCACCCCTCT 59.738 55.000 0.00 0.00 0.00 3.69
7489 9870 0.618968 ATCTCTTCCGCACCCCTCTT 60.619 55.000 0.00 0.00 0.00 2.85
7490 9871 0.040646 TCTCTTCCGCACCCCTCTTA 59.959 55.000 0.00 0.00 0.00 2.10
7491 9872 0.902531 CTCTTCCGCACCCCTCTTAA 59.097 55.000 0.00 0.00 0.00 1.85
7492 9873 1.486726 CTCTTCCGCACCCCTCTTAAT 59.513 52.381 0.00 0.00 0.00 1.40
7493 9874 1.913419 TCTTCCGCACCCCTCTTAATT 59.087 47.619 0.00 0.00 0.00 1.40
7494 9875 2.093128 TCTTCCGCACCCCTCTTAATTC 60.093 50.000 0.00 0.00 0.00 2.17
7495 9876 1.281419 TCCGCACCCCTCTTAATTCA 58.719 50.000 0.00 0.00 0.00 2.57
7496 9877 1.843851 TCCGCACCCCTCTTAATTCAT 59.156 47.619 0.00 0.00 0.00 2.57
7497 9878 2.158813 TCCGCACCCCTCTTAATTCATC 60.159 50.000 0.00 0.00 0.00 2.92
7498 9879 2.158755 CCGCACCCCTCTTAATTCATCT 60.159 50.000 0.00 0.00 0.00 2.90
7499 9880 3.071023 CCGCACCCCTCTTAATTCATCTA 59.929 47.826 0.00 0.00 0.00 1.98
7500 9881 4.310769 CGCACCCCTCTTAATTCATCTAG 58.689 47.826 0.00 0.00 0.00 2.43
7501 9882 4.646572 GCACCCCTCTTAATTCATCTAGG 58.353 47.826 0.00 0.00 0.00 3.02
7502 9883 4.505742 GCACCCCTCTTAATTCATCTAGGG 60.506 50.000 0.00 0.00 42.85 3.53
7503 9884 4.660771 CACCCCTCTTAATTCATCTAGGGT 59.339 45.833 0.00 0.00 46.16 4.34
7504 9885 4.660771 ACCCCTCTTAATTCATCTAGGGTG 59.339 45.833 0.00 0.00 43.58 4.61
7505 9886 4.907875 CCCCTCTTAATTCATCTAGGGTGA 59.092 45.833 0.00 0.00 41.85 4.02
7506 9887 5.012561 CCCCTCTTAATTCATCTAGGGTGAG 59.987 48.000 0.00 0.00 41.85 3.51
7507 9888 5.841237 CCCTCTTAATTCATCTAGGGTGAGA 59.159 44.000 0.00 0.00 39.11 3.27
7508 9889 6.500049 CCCTCTTAATTCATCTAGGGTGAGAT 59.500 42.308 0.00 0.00 39.11 2.75
7509 9890 7.017056 CCCTCTTAATTCATCTAGGGTGAGATT 59.983 40.741 0.00 2.12 39.11 2.40
7510 9891 8.435982 CCTCTTAATTCATCTAGGGTGAGATTT 58.564 37.037 0.00 0.00 33.75 2.17
7511 9892 9.844257 CTCTTAATTCATCTAGGGTGAGATTTT 57.156 33.333 0.00 0.00 33.75 1.82
7512 9893 9.838339 TCTTAATTCATCTAGGGTGAGATTTTC 57.162 33.333 0.00 0.00 33.75 2.29
7513 9894 9.844257 CTTAATTCATCTAGGGTGAGATTTTCT 57.156 33.333 0.00 0.00 33.75 2.52
7514 9895 9.838339 TTAATTCATCTAGGGTGAGATTTTCTC 57.162 33.333 0.00 0.00 43.65 2.87
7515 9896 7.688918 ATTCATCTAGGGTGAGATTTTCTCT 57.311 36.000 6.13 0.00 43.73 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.828785 GTCTTTGGATGGGTCAGTATGTAAAT 59.171 38.462 0.00 0.00 37.40 1.40
101 106 4.103153 GGATCCATTAGAGTCACCATCCAA 59.897 45.833 6.95 0.00 0.00 3.53
107 112 4.487714 TGTTGGATCCATTAGAGTCACC 57.512 45.455 17.06 0.00 0.00 4.02
117 122 2.899256 CCTTTGTGGTTGTTGGATCCAT 59.101 45.455 17.06 0.00 33.68 3.41
136 141 0.179018 GTCAGGAAGTGTGCCAACCT 60.179 55.000 0.00 0.00 0.00 3.50
152 157 0.689055 ATGGAGAAGTGCAGCAGTCA 59.311 50.000 2.31 0.00 0.00 3.41
155 160 1.093159 GGAATGGAGAAGTGCAGCAG 58.907 55.000 0.00 0.00 0.00 4.24
158 163 2.746362 GACAAGGAATGGAGAAGTGCAG 59.254 50.000 0.00 0.00 0.00 4.41
161 166 2.040278 TGGGACAAGGAATGGAGAAGTG 59.960 50.000 0.00 0.00 31.92 3.16
162 167 2.348472 TGGGACAAGGAATGGAGAAGT 58.652 47.619 0.00 0.00 31.92 3.01
256 266 8.370940 TCTTTCCTAGCTGGTAAGAATGATATG 58.629 37.037 16.35 0.00 45.30 1.78
257 267 8.497910 TCTTTCCTAGCTGGTAAGAATGATAT 57.502 34.615 16.35 0.00 45.30 1.63
258 268 7.914427 TCTTTCCTAGCTGGTAAGAATGATA 57.086 36.000 16.35 0.82 45.30 2.15
333 347 2.158957 TCCGTCCAGATTATGCCAAGAC 60.159 50.000 0.00 0.00 0.00 3.01
334 348 2.103094 CTCCGTCCAGATTATGCCAAGA 59.897 50.000 0.00 0.00 0.00 3.02
351 365 4.857871 TTTTCAATTCTGATACGCTCCG 57.142 40.909 0.00 0.00 0.00 4.63
376 390 2.156917 GTTGTTCCTTCCGGGGTTTAG 58.843 52.381 0.00 0.00 35.33 1.85
377 391 1.202915 GGTTGTTCCTTCCGGGGTTTA 60.203 52.381 0.00 0.00 35.33 2.01
378 392 0.468585 GGTTGTTCCTTCCGGGGTTT 60.469 55.000 0.00 0.00 35.33 3.27
381 395 0.035725 GTAGGTTGTTCCTTCCGGGG 60.036 60.000 0.00 0.00 45.67 5.73
386 400 3.071479 TGATTGCGTAGGTTGTTCCTTC 58.929 45.455 0.00 0.00 45.67 3.46
403 417 0.036388 ACGCATTCGGGAGTGTGATT 60.036 50.000 11.04 0.00 40.69 2.57
409 423 1.741770 GCTGAACGCATTCGGGAGT 60.742 57.895 3.16 0.00 41.00 3.85
435 627 2.146073 ATTGTGCTGGTTGGCGCTTC 62.146 55.000 7.64 0.00 42.46 3.86
445 643 2.435069 AGGAGAGAGATGATTGTGCTGG 59.565 50.000 0.00 0.00 0.00 4.85
487 685 4.150454 AGAGGGAGGCGAGAGGGG 62.150 72.222 0.00 0.00 0.00 4.79
488 686 2.520741 GAGAGGGAGGCGAGAGGG 60.521 72.222 0.00 0.00 0.00 4.30
489 687 2.520741 GGAGAGGGAGGCGAGAGG 60.521 72.222 0.00 0.00 0.00 3.69
490 688 2.904866 CGGAGAGGGAGGCGAGAG 60.905 72.222 0.00 0.00 0.00 3.20
507 705 2.187946 CGGGTGATGGGTGAGCTC 59.812 66.667 6.82 6.82 0.00 4.09
508 706 4.101448 GCGGGTGATGGGTGAGCT 62.101 66.667 0.00 0.00 0.00 4.09
510 708 4.838152 CGGCGGGTGATGGGTGAG 62.838 72.222 0.00 0.00 0.00 3.51
626 859 1.149627 CCTCGACTCCTCCTCCGAT 59.850 63.158 0.00 0.00 0.00 4.18
634 867 0.468400 GTATGGCCTCCTCGACTCCT 60.468 60.000 3.32 0.00 0.00 3.69
635 868 1.465200 GGTATGGCCTCCTCGACTCC 61.465 65.000 3.32 0.00 0.00 3.85
638 871 1.797211 CTCGGTATGGCCTCCTCGAC 61.797 65.000 3.32 0.00 34.25 4.20
639 872 1.528542 CTCGGTATGGCCTCCTCGA 60.529 63.158 3.32 7.94 34.25 4.04
640 873 1.797211 GACTCGGTATGGCCTCCTCG 61.797 65.000 3.32 3.39 34.25 4.63
641 874 0.755698 TGACTCGGTATGGCCTCCTC 60.756 60.000 3.32 0.00 34.25 3.71
642 875 0.105453 ATGACTCGGTATGGCCTCCT 60.105 55.000 3.32 0.00 34.25 3.69
643 876 0.034059 CATGACTCGGTATGGCCTCC 59.966 60.000 3.32 2.99 34.25 4.30
644 877 0.753262 ACATGACTCGGTATGGCCTC 59.247 55.000 3.32 0.00 34.25 4.70
645 878 0.753262 GACATGACTCGGTATGGCCT 59.247 55.000 3.32 0.00 34.25 5.19
646 879 0.597637 CGACATGACTCGGTATGGCC 60.598 60.000 0.00 0.00 0.00 5.36
647 880 1.215655 GCGACATGACTCGGTATGGC 61.216 60.000 0.00 0.00 34.06 4.40
648 881 0.597637 GGCGACATGACTCGGTATGG 60.598 60.000 0.00 0.00 34.06 2.74
689 922 2.065906 GACTGGGCCGACGATCTCTC 62.066 65.000 0.00 0.00 0.00 3.20
690 923 2.043852 ACTGGGCCGACGATCTCT 60.044 61.111 0.00 0.00 0.00 3.10
743 976 0.946221 CTTCCTGACGAAGCAAGCGT 60.946 55.000 0.00 0.00 41.61 5.07
1201 1464 1.464997 GAATCGTGAGCACAAGGAACC 59.535 52.381 1.20 0.00 0.00 3.62
1330 1593 3.057547 CTGGCTCCTGTCGGACTCG 62.058 68.421 9.88 0.61 34.92 4.18
1388 1651 1.550976 GTTCCTCCTCTCATCACGGTT 59.449 52.381 0.00 0.00 0.00 4.44
1607 1870 0.470766 AACCCCTTTCTGCACGTGTA 59.529 50.000 18.38 12.42 0.00 2.90
1610 1873 0.182775 AAGAACCCCTTTCTGCACGT 59.817 50.000 0.00 0.00 44.41 4.49
1611 1874 0.593128 CAAGAACCCCTTTCTGCACG 59.407 55.000 0.00 0.00 44.41 5.34
1624 1888 5.063880 AGAACATAACCCACTGACAAGAAC 58.936 41.667 0.00 0.00 0.00 3.01
1627 1891 5.065218 GCATAGAACATAACCCACTGACAAG 59.935 44.000 0.00 0.00 0.00 3.16
1664 1928 4.123497 AGTGCATCGTTAACAGCTATCA 57.877 40.909 6.39 0.00 0.00 2.15
1676 1940 7.096884 TCTAACTGTCTATTAAGTGCATCGT 57.903 36.000 0.00 0.00 0.00 3.73
1677 1941 6.638873 CCTCTAACTGTCTATTAAGTGCATCG 59.361 42.308 0.00 0.00 0.00 3.84
1678 1942 7.717568 TCCTCTAACTGTCTATTAAGTGCATC 58.282 38.462 0.00 0.00 0.00 3.91
1679 1943 7.661536 TCCTCTAACTGTCTATTAAGTGCAT 57.338 36.000 0.00 0.00 0.00 3.96
1680 1944 7.468768 CGATCCTCTAACTGTCTATTAAGTGCA 60.469 40.741 0.00 0.00 0.00 4.57
1681 1945 6.858993 CGATCCTCTAACTGTCTATTAAGTGC 59.141 42.308 0.00 0.00 0.00 4.40
1682 1946 6.858993 GCGATCCTCTAACTGTCTATTAAGTG 59.141 42.308 0.00 0.00 0.00 3.16
1683 1947 6.293516 CGCGATCCTCTAACTGTCTATTAAGT 60.294 42.308 0.00 0.00 0.00 2.24
1692 1956 1.038130 AGCCGCGATCCTCTAACTGT 61.038 55.000 8.23 0.00 0.00 3.55
1696 1960 0.821517 TTCAAGCCGCGATCCTCTAA 59.178 50.000 8.23 0.00 0.00 2.10
1711 1975 5.069318 TCTCCAGCACATGTAAACATTCAA 58.931 37.500 0.00 0.00 33.61 2.69
1723 1987 2.616510 GGCAGTTACTTCTCCAGCACAT 60.617 50.000 0.00 0.00 0.00 3.21
1845 2110 3.760151 CAGAACAAAATGGGCTGATGAGA 59.240 43.478 0.00 0.00 0.00 3.27
1851 2116 5.540911 ACAAATACAGAACAAAATGGGCTG 58.459 37.500 0.00 0.00 0.00 4.85
2334 2600 3.075884 GTCTCTTGACGTCTACCACTCT 58.924 50.000 17.92 0.00 33.15 3.24
3198 3471 0.609131 CGACCCCTTGCTTCACCAAT 60.609 55.000 0.00 0.00 0.00 3.16
3329 3602 1.686325 GGCCTGCTCCGTCCTTGATA 61.686 60.000 0.00 0.00 0.00 2.15
3587 3860 5.578005 TGGTTAGCCATACTATCGCTATC 57.422 43.478 0.00 0.00 40.46 2.08
3830 4103 1.299976 GGCTTCCATGGTCGACCTT 59.700 57.895 33.39 25.40 36.82 3.50
3987 4260 4.901197 TGAGGGTAATGTACTTTGCTGA 57.099 40.909 8.98 0.00 0.00 4.26
5037 6955 2.234661 AGATCTCGCAACCAACTCATGA 59.765 45.455 0.00 0.00 0.00 3.07
5122 7040 1.317613 TGCATTGTGGTCTTGTGGAC 58.682 50.000 0.00 0.00 43.79 4.02
5123 7041 1.955778 CTTGCATTGTGGTCTTGTGGA 59.044 47.619 0.00 0.00 0.00 4.02
5124 7042 1.955778 TCTTGCATTGTGGTCTTGTGG 59.044 47.619 0.00 0.00 0.00 4.17
5125 7043 3.928727 ATCTTGCATTGTGGTCTTGTG 57.071 42.857 0.00 0.00 0.00 3.33
5126 7044 4.942761 AAATCTTGCATTGTGGTCTTGT 57.057 36.364 0.00 0.00 0.00 3.16
5127 7045 7.765307 AGTATAAATCTTGCATTGTGGTCTTG 58.235 34.615 0.00 0.00 0.00 3.02
5128 7046 7.944729 AGTATAAATCTTGCATTGTGGTCTT 57.055 32.000 0.00 0.00 0.00 3.01
5129 7047 9.060347 CATAGTATAAATCTTGCATTGTGGTCT 57.940 33.333 0.00 0.00 0.00 3.85
5130 7048 8.840321 ACATAGTATAAATCTTGCATTGTGGTC 58.160 33.333 0.00 0.00 0.00 4.02
5131 7049 8.623903 CACATAGTATAAATCTTGCATTGTGGT 58.376 33.333 0.00 0.00 0.00 4.16
5132 7050 8.623903 ACACATAGTATAAATCTTGCATTGTGG 58.376 33.333 0.00 0.00 35.20 4.17
5137 7055 9.618890 ACAGAACACATAGTATAAATCTTGCAT 57.381 29.630 0.00 0.00 0.00 3.96
5138 7056 9.448438 AACAGAACACATAGTATAAATCTTGCA 57.552 29.630 0.00 0.00 0.00 4.08
5238 7156 7.849804 AGTTTGACCATCAGTATATGTGAAC 57.150 36.000 0.00 0.00 0.00 3.18
5262 7180 6.153340 GGATCCATGATCAACCTTCAAAAGAA 59.847 38.462 6.95 0.00 40.50 2.52
5263 7181 5.653769 GGATCCATGATCAACCTTCAAAAGA 59.346 40.000 6.95 0.00 40.50 2.52
5264 7182 5.163478 GGGATCCATGATCAACCTTCAAAAG 60.163 44.000 15.23 0.00 40.50 2.27
5324 7242 9.477484 TCAGAAAGACACTAAAATGAGTAGAAC 57.523 33.333 0.00 0.00 0.00 3.01
5607 7600 3.233507 AGCAACAACCCAACATTCTGAT 58.766 40.909 0.00 0.00 0.00 2.90
5964 7961 1.826385 CAAACCATGTCCCTCAGACC 58.174 55.000 0.00 0.00 45.68 3.85
6071 8068 4.492604 CCTCCTTTTGGCAACCGA 57.507 55.556 0.00 0.00 40.12 4.69
6199 8196 5.172687 AGTTTCTCCTTTCTTCTCCCATC 57.827 43.478 0.00 0.00 0.00 3.51
6284 8281 0.768221 TTTCTCTGACCAGCACCCCT 60.768 55.000 0.00 0.00 0.00 4.79
6287 8284 1.457346 CCATTTCTCTGACCAGCACC 58.543 55.000 0.00 0.00 0.00 5.01
6442 8439 1.202268 GGGGTACTGTTCGTCTCATCG 60.202 57.143 0.00 0.00 0.00 3.84
6565 8568 4.520111 TCCAGACAACAATGTGGAAAGATG 59.480 41.667 0.00 0.00 40.74 2.90
6609 8612 3.096852 ACCAAGTACATGACCATCGAGA 58.903 45.455 0.00 0.00 0.00 4.04
6644 8647 6.098679 CAGCAGAGTGCCATATAGTTAGATC 58.901 44.000 0.00 0.00 46.52 2.75
6739 8742 8.574737 AGTGGACCGATTGATACTATTTAGTAC 58.425 37.037 0.00 0.00 41.18 2.73
6755 8758 5.421056 TGAGTTCTACATAAAGTGGACCGAT 59.579 40.000 0.00 0.00 37.46 4.18
6756 8759 4.768448 TGAGTTCTACATAAAGTGGACCGA 59.232 41.667 0.00 0.00 37.46 4.69
6757 8760 5.068234 TGAGTTCTACATAAAGTGGACCG 57.932 43.478 0.00 0.00 37.46 4.79
6758 8761 5.817816 CCATGAGTTCTACATAAAGTGGACC 59.182 44.000 0.00 0.00 37.46 4.46
6956 9327 0.615331 CACCAGCAGTAGGGATGTGT 59.385 55.000 0.00 0.00 0.00 3.72
7028 9408 7.945033 TTTTCATCAAACAAAACAGGCTATC 57.055 32.000 0.00 0.00 0.00 2.08
7076 9457 9.737844 GCTAAACAGGTAGAGTATACTAGGTAT 57.262 37.037 5.09 0.00 33.05 2.73
7095 9476 5.048083 GGTGATCATCAAACCAAGCTAAACA 60.048 40.000 0.00 0.00 33.94 2.83
7143 9524 0.310543 GAATTGAGGCGCACACAACA 59.689 50.000 10.83 0.00 0.00 3.33
7146 9527 0.522626 CATGAATTGAGGCGCACACA 59.477 50.000 10.83 2.58 0.00 3.72
7147 9528 0.179156 CCATGAATTGAGGCGCACAC 60.179 55.000 10.83 0.00 0.00 3.82
7148 9529 1.936436 GCCATGAATTGAGGCGCACA 61.936 55.000 10.83 6.01 38.86 4.57
7154 9535 2.883386 GCCTTCTAGCCATGAATTGAGG 59.117 50.000 0.00 0.00 0.00 3.86
7161 9542 4.082081 CACAATTTTGCCTTCTAGCCATGA 60.082 41.667 0.00 0.00 0.00 3.07
7202 9583 2.281761 CTTGGTGCGTTGCCCTCT 60.282 61.111 0.00 0.00 0.00 3.69
7203 9584 0.887387 TAACTTGGTGCGTTGCCCTC 60.887 55.000 0.00 0.00 0.00 4.30
7211 9592 0.391263 GGAGGGAGTAACTTGGTGCG 60.391 60.000 0.00 0.00 0.00 5.34
7223 9604 4.947388 TCATTTATTTTGGAACGGAGGGAG 59.053 41.667 0.00 0.00 0.00 4.30
7224 9605 4.703093 GTCATTTATTTTGGAACGGAGGGA 59.297 41.667 0.00 0.00 0.00 4.20
7225 9606 4.142249 GGTCATTTATTTTGGAACGGAGGG 60.142 45.833 0.00 0.00 0.00 4.30
7226 9607 4.142249 GGGTCATTTATTTTGGAACGGAGG 60.142 45.833 0.00 0.00 0.00 4.30
7227 9608 4.705023 AGGGTCATTTATTTTGGAACGGAG 59.295 41.667 0.00 0.00 0.00 4.63
7228 9609 4.668636 AGGGTCATTTATTTTGGAACGGA 58.331 39.130 0.00 0.00 0.00 4.69
7229 9610 5.650703 AGTAGGGTCATTTATTTTGGAACGG 59.349 40.000 0.00 0.00 0.00 4.44
7230 9611 6.753107 AGTAGGGTCATTTATTTTGGAACG 57.247 37.500 0.00 0.00 0.00 3.95
7231 9612 8.364894 ACAAAGTAGGGTCATTTATTTTGGAAC 58.635 33.333 0.00 0.00 33.41 3.62
7232 9613 8.485578 ACAAAGTAGGGTCATTTATTTTGGAA 57.514 30.769 0.00 0.00 33.41 3.53
7233 9614 9.016438 GTACAAAGTAGGGTCATTTATTTTGGA 57.984 33.333 0.00 0.00 33.41 3.53
7234 9615 9.020731 AGTACAAAGTAGGGTCATTTATTTTGG 57.979 33.333 0.00 0.00 33.41 3.28
7272 9653 9.855021 CCGTTCCAAAATAGATGACTTAATTTT 57.145 29.630 0.00 0.00 33.07 1.82
7273 9654 9.238368 TCCGTTCCAAAATAGATGACTTAATTT 57.762 29.630 0.00 0.00 0.00 1.82
7274 9655 8.801882 TCCGTTCCAAAATAGATGACTTAATT 57.198 30.769 0.00 0.00 0.00 1.40
7275 9656 7.499232 CCTCCGTTCCAAAATAGATGACTTAAT 59.501 37.037 0.00 0.00 0.00 1.40
7276 9657 6.821665 CCTCCGTTCCAAAATAGATGACTTAA 59.178 38.462 0.00 0.00 0.00 1.85
7277 9658 6.346096 CCTCCGTTCCAAAATAGATGACTTA 58.654 40.000 0.00 0.00 0.00 2.24
7278 9659 5.186198 CCTCCGTTCCAAAATAGATGACTT 58.814 41.667 0.00 0.00 0.00 3.01
7279 9660 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
7280 9661 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
7281 9662 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
7282 9663 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
7283 9664 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
7284 9665 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
7285 9666 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
7286 9667 6.585416 GTTATACTCCCTCCGTTCCAAAATA 58.415 40.000 0.00 0.00 0.00 1.40
7287 9668 5.434408 GTTATACTCCCTCCGTTCCAAAAT 58.566 41.667 0.00 0.00 0.00 1.82
7288 9669 4.621274 CGTTATACTCCCTCCGTTCCAAAA 60.621 45.833 0.00 0.00 0.00 2.44
7289 9670 3.119029 CGTTATACTCCCTCCGTTCCAAA 60.119 47.826 0.00 0.00 0.00 3.28
7290 9671 2.428171 CGTTATACTCCCTCCGTTCCAA 59.572 50.000 0.00 0.00 0.00 3.53
7291 9672 2.026641 CGTTATACTCCCTCCGTTCCA 58.973 52.381 0.00 0.00 0.00 3.53
7292 9673 1.269465 GCGTTATACTCCCTCCGTTCC 60.269 57.143 0.00 0.00 0.00 3.62
7293 9674 1.406539 TGCGTTATACTCCCTCCGTTC 59.593 52.381 0.00 0.00 0.00 3.95
7294 9675 1.477553 TGCGTTATACTCCCTCCGTT 58.522 50.000 0.00 0.00 0.00 4.44
7295 9676 1.135721 GTTGCGTTATACTCCCTCCGT 59.864 52.381 0.00 0.00 0.00 4.69
7296 9677 1.135527 TGTTGCGTTATACTCCCTCCG 59.864 52.381 0.00 0.00 0.00 4.63
7297 9678 2.973694 TGTTGCGTTATACTCCCTCC 57.026 50.000 0.00 0.00 0.00 4.30
7298 9679 4.694339 AGAATGTTGCGTTATACTCCCTC 58.306 43.478 0.00 0.00 0.00 4.30
7299 9680 4.755266 AGAATGTTGCGTTATACTCCCT 57.245 40.909 0.00 0.00 0.00 4.20
7300 9681 5.813672 TGTTAGAATGTTGCGTTATACTCCC 59.186 40.000 0.00 0.00 0.00 4.30
7301 9682 6.509677 GCTGTTAGAATGTTGCGTTATACTCC 60.510 42.308 0.00 0.00 0.00 3.85
7302 9683 6.035650 TGCTGTTAGAATGTTGCGTTATACTC 59.964 38.462 0.00 0.00 0.00 2.59
7303 9684 5.872617 TGCTGTTAGAATGTTGCGTTATACT 59.127 36.000 0.00 0.00 0.00 2.12
7304 9685 5.957796 GTGCTGTTAGAATGTTGCGTTATAC 59.042 40.000 0.00 0.00 0.00 1.47
7305 9686 5.064198 GGTGCTGTTAGAATGTTGCGTTATA 59.936 40.000 0.00 0.00 0.00 0.98
7306 9687 4.142687 GGTGCTGTTAGAATGTTGCGTTAT 60.143 41.667 0.00 0.00 0.00 1.89
7307 9688 3.187637 GGTGCTGTTAGAATGTTGCGTTA 59.812 43.478 0.00 0.00 0.00 3.18
7308 9689 2.031157 GGTGCTGTTAGAATGTTGCGTT 60.031 45.455 0.00 0.00 0.00 4.84
7309 9690 1.535462 GGTGCTGTTAGAATGTTGCGT 59.465 47.619 0.00 0.00 0.00 5.24
7310 9691 1.535028 TGGTGCTGTTAGAATGTTGCG 59.465 47.619 0.00 0.00 0.00 4.85
7311 9692 3.568538 CTTGGTGCTGTTAGAATGTTGC 58.431 45.455 0.00 0.00 0.00 4.17
7312 9693 3.569701 ACCTTGGTGCTGTTAGAATGTTG 59.430 43.478 0.00 0.00 0.00 3.33
7313 9694 3.832527 ACCTTGGTGCTGTTAGAATGTT 58.167 40.909 0.00 0.00 0.00 2.71
7314 9695 3.508845 ACCTTGGTGCTGTTAGAATGT 57.491 42.857 0.00 0.00 0.00 2.71
7315 9696 7.336931 ACTTTATACCTTGGTGCTGTTAGAATG 59.663 37.037 2.03 0.00 0.00 2.67
7316 9697 7.402862 ACTTTATACCTTGGTGCTGTTAGAAT 58.597 34.615 2.03 0.00 0.00 2.40
7317 9698 6.775708 ACTTTATACCTTGGTGCTGTTAGAA 58.224 36.000 2.03 0.00 0.00 2.10
7318 9699 6.368779 ACTTTATACCTTGGTGCTGTTAGA 57.631 37.500 2.03 0.00 0.00 2.10
7319 9700 7.604927 TGTTACTTTATACCTTGGTGCTGTTAG 59.395 37.037 2.03 0.00 0.00 2.34
7320 9701 7.388500 GTGTTACTTTATACCTTGGTGCTGTTA 59.612 37.037 2.03 0.00 0.00 2.41
7321 9702 6.206048 GTGTTACTTTATACCTTGGTGCTGTT 59.794 38.462 2.03 0.00 0.00 3.16
7322 9703 5.704053 GTGTTACTTTATACCTTGGTGCTGT 59.296 40.000 2.03 0.00 0.00 4.40
7323 9704 5.938125 AGTGTTACTTTATACCTTGGTGCTG 59.062 40.000 2.03 0.00 0.00 4.41
7324 9705 6.123045 AGTGTTACTTTATACCTTGGTGCT 57.877 37.500 2.03 0.00 0.00 4.40
7325 9706 5.353400 GGAGTGTTACTTTATACCTTGGTGC 59.647 44.000 2.03 0.00 0.00 5.01
7326 9707 6.469410 TGGAGTGTTACTTTATACCTTGGTG 58.531 40.000 2.03 0.00 0.00 4.17
7327 9708 6.691255 TGGAGTGTTACTTTATACCTTGGT 57.309 37.500 0.00 0.00 0.00 3.67
7328 9709 6.938030 TGTTGGAGTGTTACTTTATACCTTGG 59.062 38.462 0.00 0.00 0.00 3.61
7329 9710 7.360946 GCTGTTGGAGTGTTACTTTATACCTTG 60.361 40.741 0.00 0.00 0.00 3.61
7330 9711 6.653740 GCTGTTGGAGTGTTACTTTATACCTT 59.346 38.462 0.00 0.00 0.00 3.50
7331 9712 6.013639 AGCTGTTGGAGTGTTACTTTATACCT 60.014 38.462 0.00 0.00 0.00 3.08
7332 9713 6.171213 AGCTGTTGGAGTGTTACTTTATACC 58.829 40.000 0.00 0.00 0.00 2.73
7333 9714 7.519002 CAAGCTGTTGGAGTGTTACTTTATAC 58.481 38.462 0.00 0.00 0.00 1.47
7334 9715 7.667043 CAAGCTGTTGGAGTGTTACTTTATA 57.333 36.000 0.00 0.00 0.00 0.98
7335 9716 6.560253 CAAGCTGTTGGAGTGTTACTTTAT 57.440 37.500 0.00 0.00 0.00 1.40
7337 9718 4.900635 CAAGCTGTTGGAGTGTTACTTT 57.099 40.909 0.00 0.00 0.00 2.66
7349 9730 2.156917 TCATTCTCTGCCAAGCTGTTG 58.843 47.619 0.00 0.00 0.00 3.33
7350 9731 2.039480 TCTCATTCTCTGCCAAGCTGTT 59.961 45.455 0.00 0.00 0.00 3.16
7351 9732 1.627329 TCTCATTCTCTGCCAAGCTGT 59.373 47.619 0.00 0.00 0.00 4.40
7352 9733 2.398252 TCTCATTCTCTGCCAAGCTG 57.602 50.000 0.00 0.00 0.00 4.24
7353 9734 3.648507 ATTCTCATTCTCTGCCAAGCT 57.351 42.857 0.00 0.00 0.00 3.74
7354 9735 3.242673 CGAATTCTCATTCTCTGCCAAGC 60.243 47.826 3.52 0.00 37.27 4.01
7355 9736 4.186926 TCGAATTCTCATTCTCTGCCAAG 58.813 43.478 3.52 0.00 37.27 3.61
7356 9737 4.206477 TCGAATTCTCATTCTCTGCCAA 57.794 40.909 3.52 0.00 37.27 4.52
7357 9738 3.893326 TCGAATTCTCATTCTCTGCCA 57.107 42.857 3.52 0.00 37.27 4.92
7358 9739 4.437239 TCTTCGAATTCTCATTCTCTGCC 58.563 43.478 0.00 0.00 37.27 4.85
7359 9740 6.601741 ATTCTTCGAATTCTCATTCTCTGC 57.398 37.500 0.00 0.00 37.27 4.26
7360 9741 7.096271 CCGTATTCTTCGAATTCTCATTCTCTG 60.096 40.741 0.00 0.00 37.27 3.35
7361 9742 6.920758 CCGTATTCTTCGAATTCTCATTCTCT 59.079 38.462 0.00 0.00 37.27 3.10
7362 9743 6.144724 CCCGTATTCTTCGAATTCTCATTCTC 59.855 42.308 0.00 0.00 37.27 2.87
7363 9744 5.986135 CCCGTATTCTTCGAATTCTCATTCT 59.014 40.000 0.00 0.00 37.27 2.40
7364 9745 5.983720 TCCCGTATTCTTCGAATTCTCATTC 59.016 40.000 0.00 0.00 36.20 2.67
7365 9746 5.753921 GTCCCGTATTCTTCGAATTCTCATT 59.246 40.000 0.00 0.00 0.00 2.57
7366 9747 5.163447 TGTCCCGTATTCTTCGAATTCTCAT 60.163 40.000 0.00 0.00 0.00 2.90
7367 9748 4.158949 TGTCCCGTATTCTTCGAATTCTCA 59.841 41.667 0.00 0.00 0.00 3.27
7368 9749 4.679662 TGTCCCGTATTCTTCGAATTCTC 58.320 43.478 0.00 0.00 0.00 2.87
7369 9750 4.730949 TGTCCCGTATTCTTCGAATTCT 57.269 40.909 0.00 0.00 0.00 2.40
7370 9751 7.148623 GGATTATGTCCCGTATTCTTCGAATTC 60.149 40.741 0.00 0.00 41.50 2.17
7371 9752 6.649557 GGATTATGTCCCGTATTCTTCGAATT 59.350 38.462 0.00 0.00 41.50 2.17
7372 9753 6.164176 GGATTATGTCCCGTATTCTTCGAAT 58.836 40.000 0.00 0.00 41.50 3.34
7373 9754 5.535333 GGATTATGTCCCGTATTCTTCGAA 58.465 41.667 0.00 0.00 41.50 3.71
7374 9755 5.130292 GGATTATGTCCCGTATTCTTCGA 57.870 43.478 0.00 0.00 41.50 3.71
7396 9777 0.396060 CCACCCCCAACCAAACAATG 59.604 55.000 0.00 0.00 0.00 2.82
7397 9778 0.766288 CCCACCCCCAACCAAACAAT 60.766 55.000 0.00 0.00 0.00 2.71
7398 9779 1.383248 CCCACCCCCAACCAAACAA 60.383 57.895 0.00 0.00 0.00 2.83
7399 9780 2.283809 CCCACCCCCAACCAAACA 59.716 61.111 0.00 0.00 0.00 2.83
7400 9781 2.525629 CCCCACCCCCAACCAAAC 60.526 66.667 0.00 0.00 0.00 2.93
7401 9782 3.851184 CCCCCACCCCCAACCAAA 61.851 66.667 0.00 0.00 0.00 3.28
7415 9796 1.381735 CCTGAATTCCCTTGCCCCC 60.382 63.158 2.27 0.00 0.00 5.40
7416 9797 0.041090 TTCCTGAATTCCCTTGCCCC 59.959 55.000 2.27 0.00 0.00 5.80
7417 9798 1.827344 CTTTCCTGAATTCCCTTGCCC 59.173 52.381 2.27 0.00 0.00 5.36
7418 9799 2.807676 TCTTTCCTGAATTCCCTTGCC 58.192 47.619 2.27 0.00 0.00 4.52
7419 9800 4.382362 CCATTCTTTCCTGAATTCCCTTGC 60.382 45.833 2.27 0.00 34.77 4.01
7420 9801 4.161001 CCCATTCTTTCCTGAATTCCCTTG 59.839 45.833 2.27 0.00 34.77 3.61
7421 9802 4.045846 TCCCATTCTTTCCTGAATTCCCTT 59.954 41.667 2.27 0.00 34.77 3.95
7422 9803 3.597868 TCCCATTCTTTCCTGAATTCCCT 59.402 43.478 2.27 0.00 34.77 4.20
7423 9804 3.981212 TCCCATTCTTTCCTGAATTCCC 58.019 45.455 2.27 0.00 34.77 3.97
7424 9805 6.550938 ATTTCCCATTCTTTCCTGAATTCC 57.449 37.500 2.27 0.00 34.77 3.01
7425 9806 7.614494 TCAATTTCCCATTCTTTCCTGAATTC 58.386 34.615 0.00 0.00 34.77 2.17
7426 9807 7.557875 TCAATTTCCCATTCTTTCCTGAATT 57.442 32.000 0.00 0.00 34.77 2.17
7427 9808 7.557875 TTCAATTTCCCATTCTTTCCTGAAT 57.442 32.000 0.00 0.00 37.16 2.57
7428 9809 6.992664 TTCAATTTCCCATTCTTTCCTGAA 57.007 33.333 0.00 0.00 0.00 3.02
7429 9810 7.557875 AATTCAATTTCCCATTCTTTCCTGA 57.442 32.000 0.00 0.00 0.00 3.86
7430 9811 9.374838 CTTAATTCAATTTCCCATTCTTTCCTG 57.625 33.333 0.00 0.00 0.00 3.86
7431 9812 9.325248 TCTTAATTCAATTTCCCATTCTTTCCT 57.675 29.630 0.00 0.00 0.00 3.36
7432 9813 9.942850 TTCTTAATTCAATTTCCCATTCTTTCC 57.057 29.630 0.00 0.00 0.00 3.13
7454 9835 8.831550 GCGGAAGAGATACATAAGATTTTTCTT 58.168 33.333 0.00 0.00 0.00 2.52
7455 9836 7.987458 TGCGGAAGAGATACATAAGATTTTTCT 59.013 33.333 0.00 0.00 0.00 2.52
7456 9837 8.064814 GTGCGGAAGAGATACATAAGATTTTTC 58.935 37.037 0.00 0.00 0.00 2.29
7457 9838 7.012421 GGTGCGGAAGAGATACATAAGATTTTT 59.988 37.037 0.00 0.00 0.00 1.94
7458 9839 6.483640 GGTGCGGAAGAGATACATAAGATTTT 59.516 38.462 0.00 0.00 0.00 1.82
7459 9840 5.992217 GGTGCGGAAGAGATACATAAGATTT 59.008 40.000 0.00 0.00 0.00 2.17
7460 9841 5.511545 GGGTGCGGAAGAGATACATAAGATT 60.512 44.000 0.00 0.00 0.00 2.40
7461 9842 4.021016 GGGTGCGGAAGAGATACATAAGAT 60.021 45.833 0.00 0.00 0.00 2.40
7462 9843 3.321111 GGGTGCGGAAGAGATACATAAGA 59.679 47.826 0.00 0.00 0.00 2.10
7463 9844 3.555168 GGGGTGCGGAAGAGATACATAAG 60.555 52.174 0.00 0.00 0.00 1.73
7464 9845 2.367567 GGGGTGCGGAAGAGATACATAA 59.632 50.000 0.00 0.00 0.00 1.90
7465 9846 1.968493 GGGGTGCGGAAGAGATACATA 59.032 52.381 0.00 0.00 0.00 2.29
7466 9847 0.759346 GGGGTGCGGAAGAGATACAT 59.241 55.000 0.00 0.00 0.00 2.29
7467 9848 0.325296 AGGGGTGCGGAAGAGATACA 60.325 55.000 0.00 0.00 0.00 2.29
7468 9849 0.389757 GAGGGGTGCGGAAGAGATAC 59.610 60.000 0.00 0.00 0.00 2.24
7469 9850 0.261991 AGAGGGGTGCGGAAGAGATA 59.738 55.000 0.00 0.00 0.00 1.98
7470 9851 0.618968 AAGAGGGGTGCGGAAGAGAT 60.619 55.000 0.00 0.00 0.00 2.75
7471 9852 0.040646 TAAGAGGGGTGCGGAAGAGA 59.959 55.000 0.00 0.00 0.00 3.10
7472 9853 0.902531 TTAAGAGGGGTGCGGAAGAG 59.097 55.000 0.00 0.00 0.00 2.85
7473 9854 1.580059 ATTAAGAGGGGTGCGGAAGA 58.420 50.000 0.00 0.00 0.00 2.87
7474 9855 2.289565 GAATTAAGAGGGGTGCGGAAG 58.710 52.381 0.00 0.00 0.00 3.46
7475 9856 1.631388 TGAATTAAGAGGGGTGCGGAA 59.369 47.619 0.00 0.00 0.00 4.30
7476 9857 1.281419 TGAATTAAGAGGGGTGCGGA 58.719 50.000 0.00 0.00 0.00 5.54
7477 9858 2.158755 AGATGAATTAAGAGGGGTGCGG 60.159 50.000 0.00 0.00 0.00 5.69
7478 9859 3.199880 AGATGAATTAAGAGGGGTGCG 57.800 47.619 0.00 0.00 0.00 5.34
7479 9860 4.505742 CCCTAGATGAATTAAGAGGGGTGC 60.506 50.000 0.00 0.00 40.09 5.01
7480 9861 4.660771 ACCCTAGATGAATTAAGAGGGGTG 59.339 45.833 9.50 0.00 46.79 4.61
7481 9862 4.660771 CACCCTAGATGAATTAAGAGGGGT 59.339 45.833 9.50 6.85 46.79 4.95
7482 9863 4.907875 TCACCCTAGATGAATTAAGAGGGG 59.092 45.833 9.50 6.34 46.79 4.79
7484 9865 6.985653 TCTCACCCTAGATGAATTAAGAGG 57.014 41.667 0.00 0.00 0.00 3.69
7485 9866 9.844257 AAAATCTCACCCTAGATGAATTAAGAG 57.156 33.333 0.00 0.00 36.34 2.85
7486 9867 9.838339 GAAAATCTCACCCTAGATGAATTAAGA 57.162 33.333 0.00 0.00 36.34 2.10
7487 9868 9.844257 AGAAAATCTCACCCTAGATGAATTAAG 57.156 33.333 0.00 0.00 36.34 1.85
7488 9869 9.838339 GAGAAAATCTCACCCTAGATGAATTAA 57.162 33.333 2.57 0.00 42.90 1.40
7489 9870 9.218525 AGAGAAAATCTCACCCTAGATGAATTA 57.781 33.333 9.82 0.00 45.73 1.40
7490 9871 8.100135 AGAGAAAATCTCACCCTAGATGAATT 57.900 34.615 9.82 0.00 45.73 2.17
7491 9872 7.688918 AGAGAAAATCTCACCCTAGATGAAT 57.311 36.000 9.82 0.00 45.73 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.