Multiple sequence alignment - TraesCS4D01G258500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G258500 chr4D 100.000 3173 0 0 1 3173 428559279 428556107 0.000000e+00 5860.0
1 TraesCS4D01G258500 chr4D 93.517 1774 70 24 705 2454 427322378 427324130 0.000000e+00 2597.0
2 TraesCS4D01G258500 chr4D 94.102 1543 61 18 702 2225 427014230 427015761 0.000000e+00 2318.0
3 TraesCS4D01G258500 chr4D 86.779 1543 132 23 731 2221 428398140 428396618 0.000000e+00 1653.0
4 TraesCS4D01G258500 chr4D 82.433 1611 169 46 883 2417 427267814 427269386 0.000000e+00 1303.0
5 TraesCS4D01G258500 chr4D 78.814 1265 206 35 1001 2225 423989777 423988535 0.000000e+00 795.0
6 TraesCS4D01G258500 chr4D 92.204 372 13 2 2091 2454 428547309 428546946 2.180000e-141 512.0
7 TraesCS4D01G258500 chr4D 94.937 158 7 1 3016 3173 346486710 346486866 2.440000e-61 246.0
8 TraesCS4D01G258500 chr4D 92.453 159 12 0 2220 2378 427021598 427021756 8.850000e-56 228.0
9 TraesCS4D01G258500 chr4D 92.053 151 12 0 2470 2620 428546863 428546713 2.480000e-51 213.0
10 TraesCS4D01G258500 chr4D 85.446 213 19 6 2243 2443 57842011 57842223 8.920000e-51 211.0
11 TraesCS4D01G258500 chr4D 79.251 347 19 23 396 690 427319830 427320175 3.230000e-45 193.0
12 TraesCS4D01G258500 chr4D 94.000 100 6 0 214 313 428398795 428398696 5.480000e-33 152.0
13 TraesCS4D01G258500 chr4D 95.455 88 4 0 604 691 427013482 427013569 1.190000e-29 141.0
14 TraesCS4D01G258500 chr4D 94.286 70 4 0 156 225 428398885 428398816 1.200000e-19 108.0
15 TraesCS4D01G258500 chr4D 95.238 63 2 1 396 457 428398512 428398450 7.240000e-17 99.0
16 TraesCS4D01G258500 chr4B 89.888 2136 106 42 393 2454 522681598 522683697 0.000000e+00 2647.0
17 TraesCS4D01G258500 chr4B 86.738 1493 136 21 731 2182 524901108 524899637 0.000000e+00 1604.0
18 TraesCS4D01G258500 chr4B 84.756 1148 127 17 957 2074 522677213 522678342 0.000000e+00 1107.0
19 TraesCS4D01G258500 chr4B 84.372 947 53 28 1 858 526959464 526960404 0.000000e+00 841.0
20 TraesCS4D01G258500 chr4B 86.701 391 23 16 1 390 522681140 522681502 1.060000e-109 407.0
21 TraesCS4D01G258500 chr4B 93.168 161 8 2 155 314 524901848 524901690 1.900000e-57 233.0
22 TraesCS4D01G258500 chr4B 80.000 285 36 13 2187 2454 524899591 524899311 1.160000e-44 191.0
23 TraesCS4D01G258500 chr4A 89.482 1911 81 49 395 2225 37833036 37834906 0.000000e+00 2305.0
24 TraesCS4D01G258500 chr4A 89.358 1917 80 53 393 2225 38663987 38662111 0.000000e+00 2296.0
25 TraesCS4D01G258500 chr4A 87.419 1542 133 22 725 2222 37999746 38001270 0.000000e+00 1716.0
26 TraesCS4D01G258500 chr4A 83.980 1392 144 23 878 2225 38675718 38674362 0.000000e+00 1262.0
27 TraesCS4D01G258500 chr4A 77.821 1276 214 35 998 2225 40260874 40262128 0.000000e+00 725.0
28 TraesCS4D01G258500 chr4A 94.424 269 4 3 2197 2454 37834967 37835235 1.370000e-108 403.0
29 TraesCS4D01G258500 chr4A 89.344 244 15 4 2223 2456 38661447 38661205 2.390000e-76 296.0
30 TraesCS4D01G258500 chr4A 89.302 215 17 1 176 390 37832727 37832935 6.750000e-67 265.0
31 TraesCS4D01G258500 chr4A 93.038 158 11 0 156 313 37999064 37999221 6.840000e-57 231.0
32 TraesCS4D01G258500 chr4A 90.909 165 13 1 393 555 37999336 37999500 1.480000e-53 220.0
33 TraesCS4D01G258500 chr4A 85.333 225 19 5 2241 2454 38662005 38661784 1.480000e-53 220.0
34 TraesCS4D01G258500 chr4A 86.082 194 14 4 2264 2446 38001398 38001589 2.500000e-46 196.0
35 TraesCS4D01G258500 chr4A 85.792 183 12 7 2846 3015 37907911 37908092 6.990000e-42 182.0
36 TraesCS4D01G258500 chr4A 81.070 243 22 13 2223 2446 38681481 38681244 4.210000e-39 172.0
37 TraesCS4D01G258500 chr4A 88.406 69 1 3 2480 2548 37835276 37835337 3.390000e-10 76.8
38 TraesCS4D01G258500 chr4A 100.000 31 0 0 694 724 37999697 37999727 1.230000e-04 58.4
39 TraesCS4D01G258500 chr7D 96.203 158 6 0 3016 3173 445955868 445955711 3.140000e-65 259.0
40 TraesCS4D01G258500 chr7D 94.937 158 8 0 3016 3173 417023719 417023876 6.800000e-62 248.0
41 TraesCS4D01G258500 chr7D 81.013 79 14 1 2791 2868 555564812 555564734 9.500000e-06 62.1
42 TraesCS4D01G258500 chr1D 96.154 156 6 0 3018 3173 368063120 368062965 4.060000e-64 255.0
43 TraesCS4D01G258500 chr1D 95.570 158 7 0 3016 3173 324001044 324001201 1.460000e-63 254.0
44 TraesCS4D01G258500 chr6B 95.570 158 7 0 3016 3173 162275542 162275699 1.460000e-63 254.0
45 TraesCS4D01G258500 chr2D 95.597 159 5 2 3016 3173 537676649 537676806 1.460000e-63 254.0
46 TraesCS4D01G258500 chr2D 94.937 158 7 1 3016 3173 458956832 458956988 2.440000e-61 246.0
47 TraesCS4D01G258500 chr2A 94.937 158 8 0 3016 3173 379704277 379704120 6.800000e-62 248.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G258500 chr4D 428556107 428559279 3172 True 5860.000000 5860 100.000000 1 3173 1 chr4D.!!$R2 3172
1 TraesCS4D01G258500 chr4D 427319830 427324130 4300 False 1395.000000 2597 86.384000 396 2454 2 chr4D.!!$F6 2058
2 TraesCS4D01G258500 chr4D 427267814 427269386 1572 False 1303.000000 1303 82.433000 883 2417 1 chr4D.!!$F4 1534
3 TraesCS4D01G258500 chr4D 427013482 427015761 2279 False 1229.500000 2318 94.778500 604 2225 2 chr4D.!!$F5 1621
4 TraesCS4D01G258500 chr4D 423988535 423989777 1242 True 795.000000 795 78.814000 1001 2225 1 chr4D.!!$R1 1224
5 TraesCS4D01G258500 chr4D 428396618 428398885 2267 True 503.000000 1653 92.575750 156 2221 4 chr4D.!!$R3 2065
6 TraesCS4D01G258500 chr4D 428546713 428547309 596 True 362.500000 512 92.128500 2091 2620 2 chr4D.!!$R4 529
7 TraesCS4D01G258500 chr4B 522677213 522683697 6484 False 1387.000000 2647 87.115000 1 2454 3 chr4B.!!$F2 2453
8 TraesCS4D01G258500 chr4B 526959464 526960404 940 False 841.000000 841 84.372000 1 858 1 chr4B.!!$F1 857
9 TraesCS4D01G258500 chr4B 524899311 524901848 2537 True 676.000000 1604 86.635333 155 2454 3 chr4B.!!$R1 2299
10 TraesCS4D01G258500 chr4A 38674362 38675718 1356 True 1262.000000 1262 83.980000 878 2225 1 chr4A.!!$R1 1347
11 TraesCS4D01G258500 chr4A 38661205 38663987 2782 True 937.333333 2296 88.011667 393 2456 3 chr4A.!!$R3 2063
12 TraesCS4D01G258500 chr4A 37832727 37835337 2610 False 762.450000 2305 90.403500 176 2548 4 chr4A.!!$F3 2372
13 TraesCS4D01G258500 chr4A 40260874 40262128 1254 False 725.000000 725 77.821000 998 2225 1 chr4A.!!$F2 1227
14 TraesCS4D01G258500 chr4A 37999064 38001589 2525 False 484.280000 1716 91.489600 156 2446 5 chr4A.!!$F4 2290

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
983 7486 0.030638 CACCAACCAAAGCAGTTCGG 59.969 55.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2698 10238 0.105039 CTTCCACGCCAGGGATAGAC 59.895 60.0 0.0 0.0 33.63 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 4007 1.941668 GCTCCTGTGCTGGTACTTGAC 60.942 57.143 0.00 0.00 0.00 3.18
116 4055 1.080366 TAACGCAGTGGCTGGTACG 60.080 57.895 0.00 0.00 45.00 3.67
117 4056 1.808531 TAACGCAGTGGCTGGTACGT 61.809 55.000 0.00 0.00 45.00 3.57
118 4057 1.808531 AACGCAGTGGCTGGTACGTA 61.809 55.000 0.00 0.00 45.00 3.57
119 4058 1.804326 CGCAGTGGCTGGTACGTAC 60.804 63.158 17.56 17.56 38.10 3.67
135 4074 6.073167 TGGTACGTACAATGGTTAAACATGTG 60.073 38.462 26.02 9.92 0.00 3.21
146 4085 7.815840 TGGTTAAACATGTGATCAGAAGAAA 57.184 32.000 0.00 0.00 0.00 2.52
164 4103 3.438087 AGAAACAACATGAGAAGATGCCG 59.562 43.478 0.00 0.00 0.00 5.69
169 4108 4.183865 CAACATGAGAAGATGCCGACTTA 58.816 43.478 0.00 0.00 0.00 2.24
205 4149 6.310197 GTTTCCAGAATTCTTCAATCAGACG 58.690 40.000 4.86 0.00 0.00 4.18
238 4214 3.885901 GGTTCCCTCAAAATGATCCTAGC 59.114 47.826 0.00 0.00 0.00 3.42
239 4215 4.385754 GGTTCCCTCAAAATGATCCTAGCT 60.386 45.833 0.00 0.00 0.00 3.32
256 4232 1.092345 GCTGGCAAGGATCGTCTTCC 61.092 60.000 0.00 0.00 35.90 3.46
328 4304 2.128035 GAATTCCATAGCGACCGACAG 58.872 52.381 0.00 0.00 0.00 3.51
354 4330 3.936453 CGAAACCCGAGATCCATTTTGTA 59.064 43.478 0.00 0.00 41.76 2.41
594 4761 1.971695 CCGTTTCTGGTCCTTGGGC 60.972 63.158 0.00 0.00 0.00 5.36
888 7375 1.656818 AATAGCCAACGCAGCGCATT 61.657 50.000 16.61 0.00 37.52 3.56
937 7440 3.573538 CCTTCTCCATCATCGATCTCTGT 59.426 47.826 0.00 0.00 0.00 3.41
941 7444 3.461061 TCCATCATCGATCTCTGTTTGC 58.539 45.455 0.00 0.00 0.00 3.68
983 7486 0.030638 CACCAACCAAAGCAGTTCGG 59.969 55.000 0.00 0.00 0.00 4.30
1206 7727 1.404035 GTCACCAAAAAGAACGTGGCT 59.596 47.619 0.00 0.00 35.72 4.75
2237 9099 4.349048 AGCCATCTATGAGCCATCAAGTAA 59.651 41.667 0.00 0.00 39.39 2.24
2340 9217 5.105513 TCAGAGATGTGTAATTGCGAGGTTA 60.106 40.000 0.00 0.00 0.00 2.85
2465 9969 1.750778 GCAGTACAATGGATGGGTTGG 59.249 52.381 0.00 0.00 0.00 3.77
2466 9970 2.883888 GCAGTACAATGGATGGGTTGGT 60.884 50.000 0.00 0.00 0.00 3.67
2468 9972 2.099405 GTACAATGGATGGGTTGGTGG 58.901 52.381 0.00 0.00 0.00 4.61
2507 10047 6.512297 ACTAGTTAAACAATTGGGCTTGTTG 58.488 36.000 10.83 0.45 45.98 3.33
2573 10113 8.692710 AGATAGGAAAATCAAGTACGTCATGTA 58.307 33.333 0.00 0.00 0.00 2.29
2589 10129 8.703604 ACGTCATGTATATATCTAAATGCACC 57.296 34.615 0.00 0.00 0.00 5.01
2608 10148 2.243221 ACCAATTCTCCCCATCCTGAAG 59.757 50.000 0.00 0.00 0.00 3.02
2621 10161 4.461781 CCATCCTGAAGCAACTTCAAGATT 59.538 41.667 15.47 3.27 44.39 2.40
2622 10162 5.399858 CATCCTGAAGCAACTTCAAGATTG 58.600 41.667 15.47 9.68 44.39 2.67
2623 10163 4.461781 ATCCTGAAGCAACTTCAAGATTGG 59.538 41.667 13.25 9.77 44.39 3.16
2624 10164 5.984333 ATCCTGAAGCAACTTCAAGATTGGT 60.984 40.000 13.25 0.00 44.39 3.67
2625 10165 4.572985 TGAAGCAACTTCAAGATTGGTG 57.427 40.909 7.54 0.00 45.84 4.17
2626 10166 3.318839 TGAAGCAACTTCAAGATTGGTGG 59.681 43.478 7.54 0.00 45.84 4.61
2627 10167 2.242043 AGCAACTTCAAGATTGGTGGG 58.758 47.619 0.00 0.00 35.32 4.61
2628 10168 1.273327 GCAACTTCAAGATTGGTGGGG 59.727 52.381 0.00 0.00 0.00 4.96
2629 10169 2.875296 CAACTTCAAGATTGGTGGGGA 58.125 47.619 0.00 0.00 0.00 4.81
2630 10170 3.230134 CAACTTCAAGATTGGTGGGGAA 58.770 45.455 0.00 0.00 0.00 3.97
2631 10171 3.833559 ACTTCAAGATTGGTGGGGAAT 57.166 42.857 0.00 0.00 0.00 3.01
2632 10172 4.132122 ACTTCAAGATTGGTGGGGAATT 57.868 40.909 0.00 0.00 0.00 2.17
2633 10173 3.834231 ACTTCAAGATTGGTGGGGAATTG 59.166 43.478 0.00 0.00 0.00 2.32
2634 10174 3.824001 TCAAGATTGGTGGGGAATTGA 57.176 42.857 0.00 0.00 0.00 2.57
2635 10175 4.125124 TCAAGATTGGTGGGGAATTGAA 57.875 40.909 0.00 0.00 0.00 2.69
2636 10176 4.088634 TCAAGATTGGTGGGGAATTGAAG 58.911 43.478 0.00 0.00 0.00 3.02
2637 10177 4.088634 CAAGATTGGTGGGGAATTGAAGA 58.911 43.478 0.00 0.00 0.00 2.87
2638 10178 4.402616 AGATTGGTGGGGAATTGAAGAA 57.597 40.909 0.00 0.00 0.00 2.52
2639 10179 4.951603 AGATTGGTGGGGAATTGAAGAAT 58.048 39.130 0.00 0.00 0.00 2.40
2640 10180 5.344566 AGATTGGTGGGGAATTGAAGAATT 58.655 37.500 0.00 0.00 34.29 2.17
2641 10181 4.888326 TTGGTGGGGAATTGAAGAATTG 57.112 40.909 0.00 0.00 31.58 2.32
2642 10182 4.125124 TGGTGGGGAATTGAAGAATTGA 57.875 40.909 0.00 0.00 31.58 2.57
2643 10183 4.487804 TGGTGGGGAATTGAAGAATTGAA 58.512 39.130 0.00 0.00 31.58 2.69
2644 10184 4.527816 TGGTGGGGAATTGAAGAATTGAAG 59.472 41.667 0.00 0.00 31.58 3.02
2645 10185 4.772100 GGTGGGGAATTGAAGAATTGAAGA 59.228 41.667 0.00 0.00 31.58 2.87
2646 10186 5.245977 GGTGGGGAATTGAAGAATTGAAGAA 59.754 40.000 0.00 0.00 31.58 2.52
2647 10187 6.070596 GGTGGGGAATTGAAGAATTGAAGAAT 60.071 38.462 0.00 0.00 31.58 2.40
2648 10188 7.389232 GTGGGGAATTGAAGAATTGAAGAATT 58.611 34.615 0.00 0.00 31.58 2.17
2649 10189 7.332678 GTGGGGAATTGAAGAATTGAAGAATTG 59.667 37.037 0.00 0.00 31.58 2.32
2650 10190 7.016465 TGGGGAATTGAAGAATTGAAGAATTGT 59.984 33.333 0.00 0.00 31.58 2.71
2651 10191 7.879677 GGGGAATTGAAGAATTGAAGAATTGTT 59.120 33.333 0.00 0.00 37.66 2.83
2652 10192 9.276590 GGGAATTGAAGAATTGAAGAATTGTTT 57.723 29.630 0.00 0.00 35.69 2.83
2655 10195 9.617523 AATTGAAGAATTGAAGAATTGTTTGGT 57.382 25.926 0.00 0.00 35.69 3.67
2656 10196 8.422973 TTGAAGAATTGAAGAATTGTTTGGTG 57.577 30.769 0.00 0.00 35.69 4.17
2657 10197 7.555087 TGAAGAATTGAAGAATTGTTTGGTGT 58.445 30.769 0.00 0.00 35.69 4.16
2658 10198 7.492020 TGAAGAATTGAAGAATTGTTTGGTGTG 59.508 33.333 0.00 0.00 35.69 3.82
2659 10199 6.877236 AGAATTGAAGAATTGTTTGGTGTGT 58.123 32.000 0.00 0.00 31.58 3.72
2660 10200 6.757947 AGAATTGAAGAATTGTTTGGTGTGTG 59.242 34.615 0.00 0.00 31.58 3.82
2661 10201 4.383850 TGAAGAATTGTTTGGTGTGTGG 57.616 40.909 0.00 0.00 0.00 4.17
2662 10202 4.019858 TGAAGAATTGTTTGGTGTGTGGA 58.980 39.130 0.00 0.00 0.00 4.02
2663 10203 4.142271 TGAAGAATTGTTTGGTGTGTGGAC 60.142 41.667 0.00 0.00 0.00 4.02
2664 10204 2.693074 AGAATTGTTTGGTGTGTGGACC 59.307 45.455 0.00 0.00 36.43 4.46
2665 10205 2.452600 ATTGTTTGGTGTGTGGACCT 57.547 45.000 0.00 0.00 36.88 3.85
2666 10206 1.757682 TTGTTTGGTGTGTGGACCTC 58.242 50.000 0.00 0.00 36.88 3.85
2667 10207 0.916086 TGTTTGGTGTGTGGACCTCT 59.084 50.000 0.00 0.00 36.88 3.69
2668 10208 1.283613 TGTTTGGTGTGTGGACCTCTT 59.716 47.619 0.00 0.00 36.88 2.85
2669 10209 2.506231 TGTTTGGTGTGTGGACCTCTTA 59.494 45.455 0.00 0.00 36.88 2.10
2670 10210 3.054287 TGTTTGGTGTGTGGACCTCTTAA 60.054 43.478 0.00 0.00 36.88 1.85
2671 10211 2.922740 TGGTGTGTGGACCTCTTAAC 57.077 50.000 0.00 0.00 36.88 2.01
2672 10212 1.069513 TGGTGTGTGGACCTCTTAACG 59.930 52.381 0.00 0.00 36.88 3.18
2673 10213 1.607251 GGTGTGTGGACCTCTTAACGG 60.607 57.143 0.00 0.00 32.69 4.44
2674 10214 1.069668 GTGTGTGGACCTCTTAACGGT 59.930 52.381 0.00 0.00 37.50 4.83
2675 10215 1.069513 TGTGTGGACCTCTTAACGGTG 59.930 52.381 0.00 0.00 34.19 4.94
2676 10216 0.682852 TGTGGACCTCTTAACGGTGG 59.317 55.000 0.00 0.00 34.19 4.61
2677 10217 0.971386 GTGGACCTCTTAACGGTGGA 59.029 55.000 0.00 0.00 34.19 4.02
2678 10218 1.345415 GTGGACCTCTTAACGGTGGAA 59.655 52.381 0.00 0.00 34.19 3.53
2679 10219 1.621814 TGGACCTCTTAACGGTGGAAG 59.378 52.381 0.00 0.00 34.19 3.46
2680 10220 1.675116 GGACCTCTTAACGGTGGAAGC 60.675 57.143 0.00 0.00 34.19 3.86
2681 10221 1.001633 GACCTCTTAACGGTGGAAGCA 59.998 52.381 0.00 0.00 34.19 3.91
2682 10222 1.628846 ACCTCTTAACGGTGGAAGCAT 59.371 47.619 0.00 0.00 32.41 3.79
2683 10223 2.039879 ACCTCTTAACGGTGGAAGCATT 59.960 45.455 0.00 0.00 32.41 3.56
2684 10224 2.420022 CCTCTTAACGGTGGAAGCATTG 59.580 50.000 0.00 0.00 0.00 2.82
2685 10225 3.334691 CTCTTAACGGTGGAAGCATTGA 58.665 45.455 0.00 0.00 0.00 2.57
2686 10226 3.071479 TCTTAACGGTGGAAGCATTGAC 58.929 45.455 0.00 0.00 0.00 3.18
2687 10227 1.434555 TAACGGTGGAAGCATTGACG 58.565 50.000 0.00 0.00 0.00 4.35
2688 10228 1.852067 AACGGTGGAAGCATTGACGC 61.852 55.000 0.00 0.00 0.00 5.19
2689 10229 2.034879 CGGTGGAAGCATTGACGCT 61.035 57.895 0.00 0.00 46.67 5.07
2690 10230 1.796796 GGTGGAAGCATTGACGCTC 59.203 57.895 0.00 0.00 42.89 5.03
2691 10231 0.955428 GGTGGAAGCATTGACGCTCA 60.955 55.000 0.00 0.00 42.89 4.26
2692 10232 0.445436 GTGGAAGCATTGACGCTCAG 59.555 55.000 0.00 0.00 42.89 3.35
2693 10233 0.321346 TGGAAGCATTGACGCTCAGA 59.679 50.000 0.00 0.00 42.89 3.27
2694 10234 1.065926 TGGAAGCATTGACGCTCAGAT 60.066 47.619 0.00 0.00 42.89 2.90
2695 10235 2.012673 GGAAGCATTGACGCTCAGATT 58.987 47.619 0.00 0.00 42.89 2.40
2696 10236 2.421424 GGAAGCATTGACGCTCAGATTT 59.579 45.455 0.00 0.00 42.89 2.17
2697 10237 3.423571 GAAGCATTGACGCTCAGATTTG 58.576 45.455 0.00 0.00 42.89 2.32
2698 10238 1.741706 AGCATTGACGCTCAGATTTGG 59.258 47.619 0.00 0.00 37.91 3.28
2699 10239 1.470098 GCATTGACGCTCAGATTTGGT 59.530 47.619 0.00 0.00 0.00 3.67
2700 10240 2.476854 GCATTGACGCTCAGATTTGGTC 60.477 50.000 0.00 0.00 0.00 4.02
2701 10241 2.839486 TTGACGCTCAGATTTGGTCT 57.161 45.000 0.00 0.00 37.80 3.85
2702 10242 3.953712 TTGACGCTCAGATTTGGTCTA 57.046 42.857 0.00 0.00 34.69 2.59
2703 10243 4.471904 TTGACGCTCAGATTTGGTCTAT 57.528 40.909 0.00 0.00 34.69 1.98
2704 10244 4.046938 TGACGCTCAGATTTGGTCTATC 57.953 45.455 0.00 0.00 34.69 2.08
2705 10245 3.181475 TGACGCTCAGATTTGGTCTATCC 60.181 47.826 0.00 0.00 34.69 2.59
2706 10246 2.103263 ACGCTCAGATTTGGTCTATCCC 59.897 50.000 0.00 0.00 34.69 3.85
2707 10247 2.366916 CGCTCAGATTTGGTCTATCCCT 59.633 50.000 0.00 0.00 34.69 4.20
2708 10248 3.737850 GCTCAGATTTGGTCTATCCCTG 58.262 50.000 0.00 0.00 34.69 4.45
2709 10249 3.495806 GCTCAGATTTGGTCTATCCCTGG 60.496 52.174 0.00 0.00 34.69 4.45
2710 10250 2.439507 TCAGATTTGGTCTATCCCTGGC 59.560 50.000 0.00 0.00 34.69 4.85
2711 10251 1.417890 AGATTTGGTCTATCCCTGGCG 59.582 52.381 0.00 0.00 34.69 5.69
2712 10252 1.141053 GATTTGGTCTATCCCTGGCGT 59.859 52.381 0.00 0.00 34.77 5.68
2713 10253 0.251916 TTTGGTCTATCCCTGGCGTG 59.748 55.000 0.00 0.00 34.77 5.34
2714 10254 1.622607 TTGGTCTATCCCTGGCGTGG 61.623 60.000 0.00 0.00 34.77 4.94
2715 10255 1.760875 GGTCTATCCCTGGCGTGGA 60.761 63.158 0.00 0.00 36.05 4.02
2716 10256 1.335132 GGTCTATCCCTGGCGTGGAA 61.335 60.000 0.00 0.00 35.03 3.53
2717 10257 0.105039 GTCTATCCCTGGCGTGGAAG 59.895 60.000 0.00 0.00 35.03 3.46
2718 10258 1.048724 TCTATCCCTGGCGTGGAAGG 61.049 60.000 0.00 0.00 35.03 3.46
2730 10270 4.185286 GGAAGGCCGGCCCGTAAT 62.185 66.667 41.72 21.28 39.21 1.89
2731 10271 2.124445 GAAGGCCGGCCCGTAATT 60.124 61.111 41.72 28.72 39.21 1.40
2732 10272 2.439519 AAGGCCGGCCCGTAATTG 60.440 61.111 41.72 0.00 39.21 2.32
2736 10276 2.439519 CCGGCCCGTAATTGCCTT 60.440 61.111 0.85 0.00 45.71 4.35
2737 10277 2.770589 CCGGCCCGTAATTGCCTTG 61.771 63.158 0.85 0.00 45.71 3.61
2738 10278 2.043980 CGGCCCGTAATTGCCTTGT 61.044 57.895 0.00 0.00 45.71 3.16
2739 10279 1.591504 CGGCCCGTAATTGCCTTGTT 61.592 55.000 0.00 0.00 45.71 2.83
2740 10280 0.108851 GGCCCGTAATTGCCTTGTTG 60.109 55.000 0.00 0.00 44.46 3.33
2741 10281 0.601057 GCCCGTAATTGCCTTGTTGT 59.399 50.000 0.00 0.00 0.00 3.32
2742 10282 1.000394 GCCCGTAATTGCCTTGTTGTT 60.000 47.619 0.00 0.00 0.00 2.83
2743 10283 2.229302 GCCCGTAATTGCCTTGTTGTTA 59.771 45.455 0.00 0.00 0.00 2.41
2744 10284 3.305471 GCCCGTAATTGCCTTGTTGTTAA 60.305 43.478 0.00 0.00 0.00 2.01
2745 10285 4.231439 CCCGTAATTGCCTTGTTGTTAAC 58.769 43.478 0.00 0.00 0.00 2.01
2746 10286 4.022676 CCCGTAATTGCCTTGTTGTTAACT 60.023 41.667 7.22 0.00 0.00 2.24
2747 10287 5.151389 CCGTAATTGCCTTGTTGTTAACTC 58.849 41.667 7.22 1.08 0.00 3.01
2748 10288 5.048991 CCGTAATTGCCTTGTTGTTAACTCT 60.049 40.000 7.22 0.00 0.00 3.24
2749 10289 5.851177 CGTAATTGCCTTGTTGTTAACTCTG 59.149 40.000 7.22 0.00 0.00 3.35
2750 10290 6.293190 CGTAATTGCCTTGTTGTTAACTCTGA 60.293 38.462 7.22 0.00 0.00 3.27
2751 10291 6.655078 AATTGCCTTGTTGTTAACTCTGAT 57.345 33.333 7.22 0.00 0.00 2.90
2752 10292 7.759489 AATTGCCTTGTTGTTAACTCTGATA 57.241 32.000 7.22 0.00 0.00 2.15
2753 10293 7.759489 ATTGCCTTGTTGTTAACTCTGATAA 57.241 32.000 7.22 0.00 0.00 1.75
2754 10294 7.759489 TTGCCTTGTTGTTAACTCTGATAAT 57.241 32.000 7.22 0.00 0.00 1.28
2755 10295 7.759489 TGCCTTGTTGTTAACTCTGATAATT 57.241 32.000 7.22 0.00 0.00 1.40
2756 10296 8.177119 TGCCTTGTTGTTAACTCTGATAATTT 57.823 30.769 7.22 0.00 0.00 1.82
2757 10297 8.081633 TGCCTTGTTGTTAACTCTGATAATTTG 58.918 33.333 7.22 0.00 0.00 2.32
2758 10298 8.296713 GCCTTGTTGTTAACTCTGATAATTTGA 58.703 33.333 7.22 0.00 0.00 2.69
2762 10302 9.349713 TGTTGTTAACTCTGATAATTTGAAGGT 57.650 29.630 7.22 0.00 0.00 3.50
2769 10309 8.814038 ACTCTGATAATTTGAAGGTTATTGCT 57.186 30.769 0.00 0.00 0.00 3.91
2770 10310 9.905713 ACTCTGATAATTTGAAGGTTATTGCTA 57.094 29.630 0.00 0.00 0.00 3.49
2773 10313 9.455847 CTGATAATTTGAAGGTTATTGCTAAGC 57.544 33.333 0.00 0.00 35.92 3.09
2774 10314 8.965819 TGATAATTTGAAGGTTATTGCTAAGCA 58.034 29.630 0.00 0.00 37.72 3.91
2775 10315 9.971922 GATAATTTGAAGGTTATTGCTAAGCAT 57.028 29.630 0.00 0.00 38.76 3.79
2776 10316 9.971922 ATAATTTGAAGGTTATTGCTAAGCATC 57.028 29.630 0.00 0.00 38.76 3.91
2777 10317 5.835113 TTGAAGGTTATTGCTAAGCATCC 57.165 39.130 0.00 0.00 38.76 3.51
2778 10318 4.854173 TGAAGGTTATTGCTAAGCATCCA 58.146 39.130 0.00 0.00 38.76 3.41
2779 10319 4.883585 TGAAGGTTATTGCTAAGCATCCAG 59.116 41.667 0.00 0.00 38.76 3.86
2780 10320 4.778213 AGGTTATTGCTAAGCATCCAGA 57.222 40.909 0.00 0.00 38.76 3.86
2781 10321 4.455606 AGGTTATTGCTAAGCATCCAGAC 58.544 43.478 0.00 0.00 38.76 3.51
2782 10322 4.080356 AGGTTATTGCTAAGCATCCAGACA 60.080 41.667 0.00 0.00 38.76 3.41
2783 10323 4.640201 GGTTATTGCTAAGCATCCAGACAA 59.360 41.667 0.00 0.00 38.76 3.18
2784 10324 5.300286 GGTTATTGCTAAGCATCCAGACAAT 59.700 40.000 0.00 0.00 38.76 2.71
2785 10325 6.486657 GGTTATTGCTAAGCATCCAGACAATA 59.513 38.462 0.00 0.00 38.76 1.90
2786 10326 7.175641 GGTTATTGCTAAGCATCCAGACAATAT 59.824 37.037 0.00 0.00 38.76 1.28
2787 10327 6.570672 ATTGCTAAGCATCCAGACAATATG 57.429 37.500 0.00 0.00 38.76 1.78
2788 10328 3.817084 TGCTAAGCATCCAGACAATATGC 59.183 43.478 0.00 0.00 45.02 3.14
2789 10329 3.190118 GCTAAGCATCCAGACAATATGCC 59.810 47.826 0.00 0.00 45.66 4.40
2790 10330 1.888215 AGCATCCAGACAATATGCCG 58.112 50.000 0.00 0.00 45.66 5.69
2791 10331 0.877071 GCATCCAGACAATATGCCGG 59.123 55.000 0.00 0.00 40.06 6.13
2792 10332 1.543208 GCATCCAGACAATATGCCGGA 60.543 52.381 5.05 0.00 40.06 5.14
2793 10333 2.420642 CATCCAGACAATATGCCGGAG 58.579 52.381 5.05 0.00 0.00 4.63
2794 10334 0.106708 TCCAGACAATATGCCGGAGC 59.893 55.000 5.05 0.00 40.48 4.70
2795 10335 1.224069 CCAGACAATATGCCGGAGCG 61.224 60.000 5.05 0.00 44.31 5.03
2810 10350 4.264638 GCGGCCGCAACTGTGTTT 62.265 61.111 43.55 0.00 41.49 2.83
2811 10351 2.899044 GCGGCCGCAACTGTGTTTA 61.899 57.895 43.55 0.00 41.49 2.01
2812 10352 1.649815 CGGCCGCAACTGTGTTTAA 59.350 52.632 14.67 0.00 0.00 1.52
2813 10353 0.239879 CGGCCGCAACTGTGTTTAAT 59.760 50.000 14.67 0.00 0.00 1.40
2814 10354 1.696988 GGCCGCAACTGTGTTTAATG 58.303 50.000 0.00 0.00 0.00 1.90
2815 10355 1.268352 GGCCGCAACTGTGTTTAATGA 59.732 47.619 0.00 0.00 0.00 2.57
2816 10356 2.094752 GGCCGCAACTGTGTTTAATGAT 60.095 45.455 0.00 0.00 0.00 2.45
2817 10357 3.574614 GCCGCAACTGTGTTTAATGATT 58.425 40.909 0.00 0.00 0.00 2.57
2818 10358 3.364621 GCCGCAACTGTGTTTAATGATTG 59.635 43.478 0.00 0.00 0.00 2.67
2819 10359 3.364621 CCGCAACTGTGTTTAATGATTGC 59.635 43.478 0.00 0.00 38.04 3.56
2820 10360 4.229096 CGCAACTGTGTTTAATGATTGCT 58.771 39.130 0.00 0.00 38.99 3.91
2821 10361 5.389778 CGCAACTGTGTTTAATGATTGCTA 58.610 37.500 0.00 0.00 38.99 3.49
2822 10362 6.029607 CGCAACTGTGTTTAATGATTGCTAT 58.970 36.000 0.00 0.00 38.99 2.97
2823 10363 6.527722 CGCAACTGTGTTTAATGATTGCTATT 59.472 34.615 0.00 0.00 38.99 1.73
2824 10364 7.062138 CGCAACTGTGTTTAATGATTGCTATTT 59.938 33.333 0.00 0.00 38.99 1.40
2825 10365 8.711457 GCAACTGTGTTTAATGATTGCTATTTT 58.289 29.630 0.00 0.00 38.30 1.82
2837 10377 9.826574 AATGATTGCTATTTTATTGCTTGTGAT 57.173 25.926 0.00 0.00 32.18 3.06
2838 10378 9.826574 ATGATTGCTATTTTATTGCTTGTGATT 57.173 25.926 0.00 0.00 32.18 2.57
2839 10379 9.656040 TGATTGCTATTTTATTGCTTGTGATTT 57.344 25.926 0.00 0.00 32.18 2.17
2843 10383 9.709495 TGCTATTTTATTGCTTGTGATTTTTCT 57.291 25.926 0.00 0.00 32.18 2.52
2844 10384 9.962759 GCTATTTTATTGCTTGTGATTTTTCTG 57.037 29.630 0.00 0.00 0.00 3.02
2852 10392 7.801716 TGCTTGTGATTTTTCTGTTACTAGT 57.198 32.000 0.00 0.00 0.00 2.57
2853 10393 8.220755 TGCTTGTGATTTTTCTGTTACTAGTT 57.779 30.769 0.00 0.00 0.00 2.24
2854 10394 8.682710 TGCTTGTGATTTTTCTGTTACTAGTTT 58.317 29.630 0.00 0.00 0.00 2.66
2855 10395 9.516314 GCTTGTGATTTTTCTGTTACTAGTTTT 57.484 29.630 0.00 0.00 0.00 2.43
2874 10414 7.674471 AGTTTTGAAACTGTAATAGAGAGGC 57.326 36.000 8.24 0.00 46.80 4.70
2875 10415 7.454225 AGTTTTGAAACTGTAATAGAGAGGCT 58.546 34.615 8.24 0.00 46.80 4.58
2876 10416 8.594550 AGTTTTGAAACTGTAATAGAGAGGCTA 58.405 33.333 8.24 0.00 46.80 3.93
2877 10417 9.216117 GTTTTGAAACTGTAATAGAGAGGCTAA 57.784 33.333 0.00 0.00 36.03 3.09
2878 10418 9.959721 TTTTGAAACTGTAATAGAGAGGCTAAT 57.040 29.630 0.00 0.00 31.66 1.73
2886 10426 9.757227 CTGTAATAGAGAGGCTAATATAATGGC 57.243 37.037 0.00 0.00 31.66 4.40
2887 10427 9.494055 TGTAATAGAGAGGCTAATATAATGGCT 57.506 33.333 0.00 0.00 39.33 4.75
2907 10447 4.596801 CTCATGAGCTTGACAGTTTAGC 57.403 45.455 10.38 0.66 35.16 3.09
2909 10449 5.405935 TCATGAGCTTGACAGTTTAGCTA 57.594 39.130 9.64 0.00 44.78 3.32
2910 10450 5.414360 TCATGAGCTTGACAGTTTAGCTAG 58.586 41.667 9.64 4.92 44.78 3.42
2911 10451 5.185828 TCATGAGCTTGACAGTTTAGCTAGA 59.814 40.000 9.64 6.67 44.78 2.43
2912 10452 5.667539 TGAGCTTGACAGTTTAGCTAGAT 57.332 39.130 9.64 0.00 44.78 1.98
2913 10453 5.655488 TGAGCTTGACAGTTTAGCTAGATC 58.345 41.667 9.64 0.00 44.78 2.75
2914 10454 5.420421 TGAGCTTGACAGTTTAGCTAGATCT 59.580 40.000 9.64 0.00 44.78 2.75
2915 10455 5.901552 AGCTTGACAGTTTAGCTAGATCTC 58.098 41.667 0.00 0.00 43.08 2.75
2916 10456 5.656416 AGCTTGACAGTTTAGCTAGATCTCT 59.344 40.000 0.00 0.00 43.08 3.10
2917 10457 6.831353 AGCTTGACAGTTTAGCTAGATCTCTA 59.169 38.462 0.00 0.00 43.08 2.43
2918 10458 7.340743 AGCTTGACAGTTTAGCTAGATCTCTAA 59.659 37.037 0.00 0.00 43.08 2.10
2919 10459 8.141268 GCTTGACAGTTTAGCTAGATCTCTAAT 58.859 37.037 0.00 0.00 32.26 1.73
2920 10460 9.462174 CTTGACAGTTTAGCTAGATCTCTAATG 57.538 37.037 0.00 1.33 0.00 1.90
2921 10461 8.753497 TGACAGTTTAGCTAGATCTCTAATGA 57.247 34.615 0.00 0.00 0.00 2.57
2922 10462 9.190317 TGACAGTTTAGCTAGATCTCTAATGAA 57.810 33.333 0.00 0.00 0.00 2.57
2996 10536 8.514330 TTTTTATAGTAATTCATTGGCGAGGT 57.486 30.769 0.00 0.00 0.00 3.85
2997 10537 9.616156 TTTTTATAGTAATTCATTGGCGAGGTA 57.384 29.630 0.00 0.00 0.00 3.08
2998 10538 8.597662 TTTATAGTAATTCATTGGCGAGGTAC 57.402 34.615 0.00 0.00 0.00 3.34
3000 10540 5.099042 AGTAATTCATTGGCGAGGTACTT 57.901 39.130 0.00 0.00 41.55 2.24
3001 10541 5.116882 AGTAATTCATTGGCGAGGTACTTC 58.883 41.667 0.00 0.00 41.55 3.01
3002 10542 3.914426 ATTCATTGGCGAGGTACTTCT 57.086 42.857 3.27 0.00 41.55 2.85
3003 10543 3.695830 TTCATTGGCGAGGTACTTCTT 57.304 42.857 3.27 0.00 41.55 2.52
3004 10544 3.695830 TCATTGGCGAGGTACTTCTTT 57.304 42.857 3.27 0.00 41.55 2.52
3005 10545 3.596214 TCATTGGCGAGGTACTTCTTTC 58.404 45.455 3.27 0.00 41.55 2.62
3006 10546 2.074547 TTGGCGAGGTACTTCTTTCG 57.925 50.000 3.27 2.42 41.55 3.46
3007 10547 0.963962 TGGCGAGGTACTTCTTTCGT 59.036 50.000 3.27 0.00 41.55 3.85
3008 10548 2.161855 TGGCGAGGTACTTCTTTCGTA 58.838 47.619 3.27 0.00 41.55 3.43
3009 10549 2.163010 TGGCGAGGTACTTCTTTCGTAG 59.837 50.000 3.27 0.00 41.55 3.51
3010 10550 2.183636 GCGAGGTACTTCTTTCGTAGC 58.816 52.381 3.27 0.00 41.55 3.58
3011 10551 2.795117 CGAGGTACTTCTTTCGTAGCC 58.205 52.381 3.27 0.00 41.55 3.93
3012 10552 2.163010 CGAGGTACTTCTTTCGTAGCCA 59.837 50.000 3.27 0.00 41.55 4.75
3013 10553 3.366679 CGAGGTACTTCTTTCGTAGCCAA 60.367 47.826 3.27 0.00 41.55 4.52
3014 10554 3.922910 AGGTACTTCTTTCGTAGCCAAC 58.077 45.455 0.00 0.00 36.33 3.77
3015 10555 3.577415 AGGTACTTCTTTCGTAGCCAACT 59.423 43.478 0.00 0.00 36.33 3.16
3016 10556 4.768968 AGGTACTTCTTTCGTAGCCAACTA 59.231 41.667 0.00 0.00 36.33 2.24
3017 10557 4.861462 GGTACTTCTTTCGTAGCCAACTAC 59.139 45.833 0.00 0.00 44.57 2.73
3026 10566 2.603953 GTAGCCAACTACGTCTCCAAC 58.396 52.381 0.00 0.00 39.51 3.77
3042 10582 8.570096 CGTCTCCAACGTATCTATAATTTTCA 57.430 34.615 0.00 0.00 46.42 2.69
3043 10583 9.027129 CGTCTCCAACGTATCTATAATTTTCAA 57.973 33.333 0.00 0.00 46.42 2.69
3137 10677 8.857694 TTTTGGACTAACTTATTAACCCAGAG 57.142 34.615 0.00 0.00 0.00 3.35
3138 10678 5.985911 TGGACTAACTTATTAACCCAGAGC 58.014 41.667 0.00 0.00 0.00 4.09
3139 10679 5.104652 TGGACTAACTTATTAACCCAGAGCC 60.105 44.000 0.00 0.00 0.00 4.70
3140 10680 5.366460 GACTAACTTATTAACCCAGAGCCC 58.634 45.833 0.00 0.00 0.00 5.19
3141 10681 4.786454 ACTAACTTATTAACCCAGAGCCCA 59.214 41.667 0.00 0.00 0.00 5.36
3142 10682 3.933861 ACTTATTAACCCAGAGCCCAG 57.066 47.619 0.00 0.00 0.00 4.45
3143 10683 3.190439 ACTTATTAACCCAGAGCCCAGT 58.810 45.455 0.00 0.00 0.00 4.00
3144 10684 3.054361 ACTTATTAACCCAGAGCCCAGTG 60.054 47.826 0.00 0.00 0.00 3.66
3145 10685 0.034089 ATTAACCCAGAGCCCAGTGC 60.034 55.000 0.00 0.00 41.71 4.40
3146 10686 2.137177 TTAACCCAGAGCCCAGTGCC 62.137 60.000 0.00 0.00 42.71 5.01
3148 10688 4.421515 CCCAGAGCCCAGTGCCAG 62.422 72.222 0.00 0.00 42.71 4.85
3149 10689 3.644606 CCAGAGCCCAGTGCCAGT 61.645 66.667 0.00 0.00 42.71 4.00
3150 10690 2.433446 CAGAGCCCAGTGCCAGTT 59.567 61.111 0.00 0.00 42.71 3.16
3151 10691 1.228367 CAGAGCCCAGTGCCAGTTT 60.228 57.895 0.00 0.00 42.71 2.66
3152 10692 1.073897 AGAGCCCAGTGCCAGTTTC 59.926 57.895 0.00 0.00 42.71 2.78
3153 10693 1.073897 GAGCCCAGTGCCAGTTTCT 59.926 57.895 0.00 0.00 42.71 2.52
3154 10694 1.228367 AGCCCAGTGCCAGTTTCTG 60.228 57.895 0.00 0.00 42.71 3.02
3155 10695 1.529244 GCCCAGTGCCAGTTTCTGT 60.529 57.895 0.00 0.00 0.00 3.41
3156 10696 1.109323 GCCCAGTGCCAGTTTCTGTT 61.109 55.000 0.00 0.00 0.00 3.16
3157 10697 1.402787 CCCAGTGCCAGTTTCTGTTT 58.597 50.000 0.00 0.00 0.00 2.83
3158 10698 1.756538 CCCAGTGCCAGTTTCTGTTTT 59.243 47.619 0.00 0.00 0.00 2.43
3159 10699 2.168313 CCCAGTGCCAGTTTCTGTTTTT 59.832 45.455 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 4007 4.090930 CGTTACCAATTACAAGGACGAGTG 59.909 45.833 0.00 0.00 29.55 3.51
116 4055 8.039603 TCTGATCACATGTTTAACCATTGTAC 57.960 34.615 0.00 0.00 0.00 2.90
117 4056 8.628630 TTCTGATCACATGTTTAACCATTGTA 57.371 30.769 0.00 0.00 0.00 2.41
118 4057 7.448161 TCTTCTGATCACATGTTTAACCATTGT 59.552 33.333 0.00 0.00 0.00 2.71
119 4058 7.819644 TCTTCTGATCACATGTTTAACCATTG 58.180 34.615 0.00 0.00 0.00 2.82
135 4074 7.664082 TCTTCTCATGTTGTTTCTTCTGATC 57.336 36.000 0.00 0.00 0.00 2.92
146 4085 2.027745 AGTCGGCATCTTCTCATGTTGT 60.028 45.455 0.00 0.00 0.00 3.32
164 4103 6.202188 TCTGGAAACGTGAACTTGATTAAGTC 59.798 38.462 3.00 0.00 46.14 3.01
169 4108 6.263168 AGAATTCTGGAAACGTGAACTTGATT 59.737 34.615 7.30 0.00 0.00 2.57
238 4214 3.071580 GGAAGACGATCCTTGCCAG 57.928 57.895 0.00 0.00 36.50 4.85
256 4232 2.280524 TGACAGTTGCCCGTTCCG 60.281 61.111 0.00 0.00 0.00 4.30
268 4244 4.019858 TCAGATAGTTCAGGTCCTGACAG 58.980 47.826 21.73 6.78 40.46 3.51
328 4304 1.814169 GGATCTCGGGTTTCGCCAC 60.814 63.158 0.00 0.00 39.65 5.01
354 4330 3.288092 GTTCAGGTTCAGGTTCAGGTTT 58.712 45.455 0.00 0.00 0.00 3.27
493 4618 3.884581 CTCCGGCGTCGTCGTCAAA 62.885 63.158 18.95 0.00 42.21 2.69
529 4661 1.451747 GGACTAGGAGGAGACGCGT 60.452 63.158 13.85 13.85 0.00 6.01
576 4743 1.971695 GCCCAAGGACCAGAAACGG 60.972 63.158 0.00 0.00 0.00 4.44
726 7192 6.320171 CGACTAGAATTCAGGTTCTTCGTTA 58.680 40.000 8.44 0.00 39.15 3.18
745 7211 2.030007 ACGGTTCGTTCATTTCCGACTA 60.030 45.455 8.84 0.00 43.22 2.59
833 7304 5.509501 GCCATGGAATTCAGTTCAGTTTCAA 60.510 40.000 18.40 0.00 38.64 2.69
888 7375 3.134081 GGAAGGAAGTTCCGTATGGATCA 59.866 47.826 16.31 0.00 45.69 2.92
937 7440 1.573829 CGGCGGAACTAAGCAGCAAA 61.574 55.000 0.00 0.00 34.54 3.68
941 7444 3.195698 GGCGGCGGAACTAAGCAG 61.196 66.667 9.78 0.00 34.54 4.24
983 7486 3.471244 ATGGCGCTAGCTCGACGAC 62.471 63.158 13.93 4.63 41.17 4.34
1206 7727 1.645710 GGGAGGAGAGGAACTTGACA 58.354 55.000 0.00 0.00 41.55 3.58
1718 8335 1.653151 GTAGCCCTTGAACATCGTCC 58.347 55.000 0.00 0.00 0.00 4.79
2069 8713 2.857104 GCCTTCTTTTTGGGAAACGACG 60.857 50.000 0.00 0.00 0.00 5.12
2237 9099 1.429148 GCGATCCGGCGATCAAGTTT 61.429 55.000 9.30 0.00 44.55 2.66
2340 9217 4.639310 GCACTCAAATGGATCTCTGAACAT 59.361 41.667 0.00 0.00 0.00 2.71
2465 9969 3.136009 AGTACCACTGGCTTTAACCAC 57.864 47.619 0.00 0.00 35.33 4.16
2466 9970 3.905591 ACTAGTACCACTGGCTTTAACCA 59.094 43.478 0.00 0.00 38.29 3.67
2468 9972 7.442062 TGTTTAACTAGTACCACTGGCTTTAAC 59.558 37.037 0.00 0.00 28.76 2.01
2507 10047 2.694628 TGCATATGGAAAAGATGGTGGC 59.305 45.455 4.56 0.00 0.00 5.01
2573 10113 7.836183 GGGGAGAATTGGTGCATTTAGATATAT 59.164 37.037 0.00 0.00 0.00 0.86
2577 10117 4.218312 GGGGAGAATTGGTGCATTTAGAT 58.782 43.478 0.00 0.00 0.00 1.98
2579 10119 3.364549 TGGGGAGAATTGGTGCATTTAG 58.635 45.455 0.00 0.00 0.00 1.85
2581 10121 2.323999 TGGGGAGAATTGGTGCATTT 57.676 45.000 0.00 0.00 0.00 2.32
2589 10129 2.305009 GCTTCAGGATGGGGAGAATTG 58.695 52.381 0.00 0.00 36.16 2.32
2595 10135 1.004745 GAAGTTGCTTCAGGATGGGGA 59.995 52.381 4.21 0.00 39.95 4.81
2597 10137 2.205022 TGAAGTTGCTTCAGGATGGG 57.795 50.000 7.41 0.00 44.27 4.00
2608 10148 1.273327 CCCCACCAATCTTGAAGTTGC 59.727 52.381 0.00 0.00 0.00 4.17
2620 10160 4.487804 TCAATTCTTCAATTCCCCACCAA 58.512 39.130 0.00 0.00 28.97 3.67
2621 10161 4.125124 TCAATTCTTCAATTCCCCACCA 57.875 40.909 0.00 0.00 28.97 4.17
2622 10162 4.772100 TCTTCAATTCTTCAATTCCCCACC 59.228 41.667 0.00 0.00 28.97 4.61
2623 10163 5.982890 TCTTCAATTCTTCAATTCCCCAC 57.017 39.130 0.00 0.00 28.97 4.61
2624 10164 7.016465 ACAATTCTTCAATTCTTCAATTCCCCA 59.984 33.333 0.00 0.00 28.97 4.96
2625 10165 7.389232 ACAATTCTTCAATTCTTCAATTCCCC 58.611 34.615 0.00 0.00 28.97 4.81
2626 10166 8.837788 AACAATTCTTCAATTCTTCAATTCCC 57.162 30.769 0.00 0.00 28.97 3.97
2629 10169 9.617523 ACCAAACAATTCTTCAATTCTTCAATT 57.382 25.926 0.00 0.00 28.97 2.32
2630 10170 9.048446 CACCAAACAATTCTTCAATTCTTCAAT 57.952 29.630 0.00 0.00 28.97 2.57
2631 10171 8.040132 ACACCAAACAATTCTTCAATTCTTCAA 58.960 29.630 0.00 0.00 28.97 2.69
2632 10172 7.492020 CACACCAAACAATTCTTCAATTCTTCA 59.508 33.333 0.00 0.00 28.97 3.02
2633 10173 7.492344 ACACACCAAACAATTCTTCAATTCTTC 59.508 33.333 0.00 0.00 28.97 2.87
2634 10174 7.278424 CACACACCAAACAATTCTTCAATTCTT 59.722 33.333 0.00 0.00 28.97 2.52
2635 10175 6.757947 CACACACCAAACAATTCTTCAATTCT 59.242 34.615 0.00 0.00 28.97 2.40
2636 10176 6.018832 CCACACACCAAACAATTCTTCAATTC 60.019 38.462 0.00 0.00 28.97 2.17
2637 10177 5.816777 CCACACACCAAACAATTCTTCAATT 59.183 36.000 0.00 0.00 31.91 2.32
2638 10178 5.128499 TCCACACACCAAACAATTCTTCAAT 59.872 36.000 0.00 0.00 0.00 2.57
2639 10179 4.464244 TCCACACACCAAACAATTCTTCAA 59.536 37.500 0.00 0.00 0.00 2.69
2640 10180 4.019858 TCCACACACCAAACAATTCTTCA 58.980 39.130 0.00 0.00 0.00 3.02
2641 10181 4.359706 GTCCACACACCAAACAATTCTTC 58.640 43.478 0.00 0.00 0.00 2.87
2642 10182 3.132111 GGTCCACACACCAAACAATTCTT 59.868 43.478 0.00 0.00 36.32 2.52
2643 10183 2.693074 GGTCCACACACCAAACAATTCT 59.307 45.455 0.00 0.00 36.32 2.40
2644 10184 2.693074 AGGTCCACACACCAAACAATTC 59.307 45.455 0.00 0.00 39.16 2.17
2645 10185 2.693074 GAGGTCCACACACCAAACAATT 59.307 45.455 0.00 0.00 39.16 2.32
2646 10186 2.091885 AGAGGTCCACACACCAAACAAT 60.092 45.455 0.00 0.00 39.16 2.71
2647 10187 1.283613 AGAGGTCCACACACCAAACAA 59.716 47.619 0.00 0.00 39.16 2.83
2648 10188 0.916086 AGAGGTCCACACACCAAACA 59.084 50.000 0.00 0.00 39.16 2.83
2649 10189 2.052782 AAGAGGTCCACACACCAAAC 57.947 50.000 0.00 0.00 39.16 2.93
2650 10190 3.547746 GTTAAGAGGTCCACACACCAAA 58.452 45.455 0.00 0.00 39.16 3.28
2651 10191 2.484065 CGTTAAGAGGTCCACACACCAA 60.484 50.000 0.00 0.00 39.16 3.67
2652 10192 1.069513 CGTTAAGAGGTCCACACACCA 59.930 52.381 0.00 0.00 39.16 4.17
2653 10193 1.607251 CCGTTAAGAGGTCCACACACC 60.607 57.143 0.00 0.00 36.58 4.16
2654 10194 1.069668 ACCGTTAAGAGGTCCACACAC 59.930 52.381 0.00 0.00 37.44 3.82
2655 10195 1.069513 CACCGTTAAGAGGTCCACACA 59.930 52.381 0.00 0.00 40.59 3.72
2656 10196 1.607251 CCACCGTTAAGAGGTCCACAC 60.607 57.143 0.00 0.00 40.59 3.82
2657 10197 0.682852 CCACCGTTAAGAGGTCCACA 59.317 55.000 0.00 0.00 40.59 4.17
2658 10198 0.971386 TCCACCGTTAAGAGGTCCAC 59.029 55.000 0.00 0.00 40.59 4.02
2659 10199 1.621814 CTTCCACCGTTAAGAGGTCCA 59.378 52.381 0.00 0.00 40.59 4.02
2660 10200 1.675116 GCTTCCACCGTTAAGAGGTCC 60.675 57.143 0.00 0.00 40.59 4.46
2661 10201 1.001633 TGCTTCCACCGTTAAGAGGTC 59.998 52.381 0.00 0.00 40.59 3.85
2662 10202 1.053424 TGCTTCCACCGTTAAGAGGT 58.947 50.000 0.00 0.00 43.97 3.85
2663 10203 2.403252 ATGCTTCCACCGTTAAGAGG 57.597 50.000 0.00 0.00 0.00 3.69
2664 10204 3.125316 GTCAATGCTTCCACCGTTAAGAG 59.875 47.826 0.00 0.00 0.00 2.85
2665 10205 3.071479 GTCAATGCTTCCACCGTTAAGA 58.929 45.455 0.00 0.00 0.00 2.10
2666 10206 2.159707 CGTCAATGCTTCCACCGTTAAG 60.160 50.000 0.00 0.00 0.00 1.85
2667 10207 1.801771 CGTCAATGCTTCCACCGTTAA 59.198 47.619 0.00 0.00 0.00 2.01
2668 10208 1.434555 CGTCAATGCTTCCACCGTTA 58.565 50.000 0.00 0.00 0.00 3.18
2669 10209 1.852067 GCGTCAATGCTTCCACCGTT 61.852 55.000 0.00 0.00 0.00 4.44
2670 10210 2.325082 GCGTCAATGCTTCCACCGT 61.325 57.895 0.00 0.00 0.00 4.83
2671 10211 2.034879 AGCGTCAATGCTTCCACCG 61.035 57.895 0.00 0.00 44.46 4.94
2672 10212 3.987404 AGCGTCAATGCTTCCACC 58.013 55.556 0.00 0.00 44.46 4.61
2677 10217 8.962064 TAGACCAAATCTGAGCGTCAATGCTT 62.962 42.308 0.00 0.00 41.42 3.91
2678 10218 7.590139 TAGACCAAATCTGAGCGTCAATGCT 62.590 44.000 0.00 0.00 42.97 3.79
2679 10219 1.470098 ACCAAATCTGAGCGTCAATGC 59.530 47.619 0.00 0.00 0.00 3.56
2680 10220 3.005554 AGACCAAATCTGAGCGTCAATG 58.994 45.455 0.00 0.00 35.81 2.82
2681 10221 3.340814 AGACCAAATCTGAGCGTCAAT 57.659 42.857 0.00 0.00 35.81 2.57
2682 10222 2.839486 AGACCAAATCTGAGCGTCAA 57.161 45.000 0.00 0.00 35.81 3.18
2683 10223 3.181475 GGATAGACCAAATCTGAGCGTCA 60.181 47.826 0.00 0.00 38.49 4.35
2684 10224 3.385577 GGATAGACCAAATCTGAGCGTC 58.614 50.000 0.00 0.00 38.49 5.19
2685 10225 2.103263 GGGATAGACCAAATCTGAGCGT 59.897 50.000 0.00 0.00 38.49 5.07
2686 10226 2.366916 AGGGATAGACCAAATCTGAGCG 59.633 50.000 0.00 0.00 38.49 5.03
2687 10227 3.495806 CCAGGGATAGACCAAATCTGAGC 60.496 52.174 0.00 0.00 38.49 4.26
2688 10228 3.495806 GCCAGGGATAGACCAAATCTGAG 60.496 52.174 0.00 0.00 38.49 3.35
2689 10229 2.439507 GCCAGGGATAGACCAAATCTGA 59.560 50.000 0.00 0.00 38.49 3.27
2690 10230 2.808202 CGCCAGGGATAGACCAAATCTG 60.808 54.545 0.00 0.00 38.49 2.90
2691 10231 1.417890 CGCCAGGGATAGACCAAATCT 59.582 52.381 0.00 0.00 41.95 2.40
2692 10232 1.141053 ACGCCAGGGATAGACCAAATC 59.859 52.381 0.00 0.00 41.20 2.17
2693 10233 1.134098 CACGCCAGGGATAGACCAAAT 60.134 52.381 0.00 0.00 41.20 2.32
2694 10234 0.251916 CACGCCAGGGATAGACCAAA 59.748 55.000 0.00 0.00 41.20 3.28
2695 10235 1.622607 CCACGCCAGGGATAGACCAA 61.623 60.000 0.00 0.00 41.20 3.67
2696 10236 2.063979 CCACGCCAGGGATAGACCA 61.064 63.158 0.00 0.00 41.20 4.02
2697 10237 1.335132 TTCCACGCCAGGGATAGACC 61.335 60.000 0.00 0.00 33.63 3.85
2698 10238 0.105039 CTTCCACGCCAGGGATAGAC 59.895 60.000 0.00 0.00 33.63 2.59
2699 10239 1.048724 CCTTCCACGCCAGGGATAGA 61.049 60.000 0.00 0.00 33.63 1.98
2700 10240 1.447643 CCTTCCACGCCAGGGATAG 59.552 63.158 0.00 0.00 33.63 2.08
2701 10241 2.742116 GCCTTCCACGCCAGGGATA 61.742 63.158 0.00 0.00 33.63 2.59
2702 10242 4.115199 GCCTTCCACGCCAGGGAT 62.115 66.667 0.00 0.00 33.63 3.85
2713 10253 3.709348 AATTACGGGCCGGCCTTCC 62.709 63.158 42.70 26.56 36.10 3.46
2714 10254 2.124445 AATTACGGGCCGGCCTTC 60.124 61.111 42.70 27.33 36.10 3.46
2715 10255 2.439519 CAATTACGGGCCGGCCTT 60.440 61.111 42.70 31.46 36.10 4.35
2722 10262 0.601057 ACAACAAGGCAATTACGGGC 59.399 50.000 0.00 0.00 0.00 6.13
2723 10263 4.022676 AGTTAACAACAAGGCAATTACGGG 60.023 41.667 8.61 0.00 0.00 5.28
2724 10264 5.048991 AGAGTTAACAACAAGGCAATTACGG 60.049 40.000 8.61 0.00 0.00 4.02
2725 10265 5.851177 CAGAGTTAACAACAAGGCAATTACG 59.149 40.000 8.61 0.00 0.00 3.18
2726 10266 6.966021 TCAGAGTTAACAACAAGGCAATTAC 58.034 36.000 8.61 0.00 0.00 1.89
2727 10267 7.759489 ATCAGAGTTAACAACAAGGCAATTA 57.241 32.000 8.61 0.00 0.00 1.40
2728 10268 6.655078 ATCAGAGTTAACAACAAGGCAATT 57.345 33.333 8.61 0.00 0.00 2.32
2729 10269 7.759489 TTATCAGAGTTAACAACAAGGCAAT 57.241 32.000 8.61 0.00 0.00 3.56
2730 10270 7.759489 ATTATCAGAGTTAACAACAAGGCAA 57.241 32.000 8.61 0.00 0.00 4.52
2731 10271 7.759489 AATTATCAGAGTTAACAACAAGGCA 57.241 32.000 8.61 0.00 0.00 4.75
2732 10272 8.296713 TCAAATTATCAGAGTTAACAACAAGGC 58.703 33.333 8.61 0.00 0.00 4.35
2736 10276 9.349713 ACCTTCAAATTATCAGAGTTAACAACA 57.650 29.630 8.61 0.00 0.00 3.33
2743 10283 9.247861 AGCAATAACCTTCAAATTATCAGAGTT 57.752 29.630 0.00 0.00 0.00 3.01
2744 10284 8.814038 AGCAATAACCTTCAAATTATCAGAGT 57.186 30.769 0.00 0.00 0.00 3.24
2747 10287 9.455847 GCTTAGCAATAACCTTCAAATTATCAG 57.544 33.333 0.00 0.00 0.00 2.90
2748 10288 8.965819 TGCTTAGCAATAACCTTCAAATTATCA 58.034 29.630 3.67 0.00 34.76 2.15
2749 10289 9.971922 ATGCTTAGCAATAACCTTCAAATTATC 57.028 29.630 12.08 0.00 43.62 1.75
2750 10290 9.971922 GATGCTTAGCAATAACCTTCAAATTAT 57.028 29.630 12.08 0.00 43.62 1.28
2751 10291 8.413229 GGATGCTTAGCAATAACCTTCAAATTA 58.587 33.333 12.08 0.00 43.62 1.40
2752 10292 7.093377 TGGATGCTTAGCAATAACCTTCAAATT 60.093 33.333 12.08 0.00 43.62 1.82
2753 10293 6.380846 TGGATGCTTAGCAATAACCTTCAAAT 59.619 34.615 12.08 0.00 43.62 2.32
2754 10294 5.714333 TGGATGCTTAGCAATAACCTTCAAA 59.286 36.000 12.08 0.00 43.62 2.69
2755 10295 5.260424 TGGATGCTTAGCAATAACCTTCAA 58.740 37.500 12.08 0.00 43.62 2.69
2756 10296 4.854173 TGGATGCTTAGCAATAACCTTCA 58.146 39.130 12.08 0.00 43.62 3.02
2757 10297 5.008118 GTCTGGATGCTTAGCAATAACCTTC 59.992 44.000 12.08 1.76 43.62 3.46
2758 10298 4.884164 GTCTGGATGCTTAGCAATAACCTT 59.116 41.667 12.08 0.00 43.62 3.50
2759 10299 4.080356 TGTCTGGATGCTTAGCAATAACCT 60.080 41.667 12.08 0.00 43.62 3.50
2760 10300 4.199310 TGTCTGGATGCTTAGCAATAACC 58.801 43.478 12.08 12.73 43.62 2.85
2761 10301 5.818136 TTGTCTGGATGCTTAGCAATAAC 57.182 39.130 12.08 6.34 43.62 1.89
2762 10302 7.308770 GCATATTGTCTGGATGCTTAGCAATAA 60.309 37.037 12.08 0.00 43.62 1.40
2763 10303 6.149973 GCATATTGTCTGGATGCTTAGCAATA 59.850 38.462 12.08 2.11 43.62 1.90
2764 10304 5.048224 GCATATTGTCTGGATGCTTAGCAAT 60.048 40.000 12.08 0.00 43.62 3.56
2765 10305 4.276678 GCATATTGTCTGGATGCTTAGCAA 59.723 41.667 12.08 0.00 43.62 3.91
2766 10306 3.817084 GCATATTGTCTGGATGCTTAGCA 59.183 43.478 10.09 10.09 44.86 3.49
2767 10307 3.190118 GGCATATTGTCTGGATGCTTAGC 59.810 47.826 0.00 0.00 44.36 3.09
2768 10308 3.434641 CGGCATATTGTCTGGATGCTTAG 59.565 47.826 6.09 0.00 44.36 2.18
2769 10309 3.402110 CGGCATATTGTCTGGATGCTTA 58.598 45.455 6.09 0.00 44.36 3.09
2770 10310 2.224606 CGGCATATTGTCTGGATGCTT 58.775 47.619 6.09 0.00 44.36 3.91
2771 10311 1.544093 CCGGCATATTGTCTGGATGCT 60.544 52.381 6.09 0.00 44.36 3.79
2772 10312 0.877071 CCGGCATATTGTCTGGATGC 59.123 55.000 0.00 0.00 44.24 3.91
2773 10313 2.420642 CTCCGGCATATTGTCTGGATG 58.579 52.381 0.00 0.00 28.00 3.51
2774 10314 1.271054 GCTCCGGCATATTGTCTGGAT 60.271 52.381 0.00 0.00 38.54 3.41
2775 10315 0.106708 GCTCCGGCATATTGTCTGGA 59.893 55.000 0.00 0.00 38.54 3.86
2776 10316 1.224069 CGCTCCGGCATATTGTCTGG 61.224 60.000 0.00 0.00 38.60 3.86
2777 10317 1.224069 CCGCTCCGGCATATTGTCTG 61.224 60.000 0.00 0.00 41.17 3.51
2778 10318 1.069765 CCGCTCCGGCATATTGTCT 59.930 57.895 0.00 0.00 41.17 3.41
2779 10319 3.642755 CCGCTCCGGCATATTGTC 58.357 61.111 0.00 0.00 41.17 3.18
2793 10333 2.395367 TTAAACACAGTTGCGGCCGC 62.395 55.000 42.35 42.35 42.35 6.53
2794 10334 0.239879 ATTAAACACAGTTGCGGCCG 59.760 50.000 24.05 24.05 0.00 6.13
2795 10335 1.268352 TCATTAAACACAGTTGCGGCC 59.732 47.619 0.00 0.00 0.00 6.13
2796 10336 2.697431 TCATTAAACACAGTTGCGGC 57.303 45.000 0.00 0.00 0.00 6.53
2797 10337 3.364621 GCAATCATTAAACACAGTTGCGG 59.635 43.478 0.00 0.00 32.42 5.69
2798 10338 4.229096 AGCAATCATTAAACACAGTTGCG 58.771 39.130 0.00 0.00 43.63 4.85
2799 10339 7.816945 AATAGCAATCATTAAACACAGTTGC 57.183 32.000 0.00 0.00 40.37 4.17
2811 10351 9.826574 ATCACAAGCAATAAAATAGCAATCATT 57.173 25.926 0.00 0.00 0.00 2.57
2812 10352 9.826574 AATCACAAGCAATAAAATAGCAATCAT 57.173 25.926 0.00 0.00 0.00 2.45
2813 10353 9.656040 AAATCACAAGCAATAAAATAGCAATCA 57.344 25.926 0.00 0.00 0.00 2.57
2817 10357 9.709495 AGAAAAATCACAAGCAATAAAATAGCA 57.291 25.926 0.00 0.00 0.00 3.49
2818 10358 9.962759 CAGAAAAATCACAAGCAATAAAATAGC 57.037 29.630 0.00 0.00 0.00 2.97
2826 10366 8.850156 ACTAGTAACAGAAAAATCACAAGCAAT 58.150 29.630 0.00 0.00 0.00 3.56
2827 10367 8.220755 ACTAGTAACAGAAAAATCACAAGCAA 57.779 30.769 0.00 0.00 0.00 3.91
2828 10368 7.801716 ACTAGTAACAGAAAAATCACAAGCA 57.198 32.000 0.00 0.00 0.00 3.91
2829 10369 9.516314 AAAACTAGTAACAGAAAAATCACAAGC 57.484 29.630 0.00 0.00 0.00 4.01
2847 10387 9.930693 CCTCTCTATTACAGTTTCAAAACTAGT 57.069 33.333 7.76 10.49 46.89 2.57
2848 10388 8.874816 GCCTCTCTATTACAGTTTCAAAACTAG 58.125 37.037 7.76 2.63 46.89 2.57
2849 10389 8.594550 AGCCTCTCTATTACAGTTTCAAAACTA 58.405 33.333 7.76 0.00 46.89 2.24
2851 10391 7.674471 AGCCTCTCTATTACAGTTTCAAAAC 57.326 36.000 0.00 0.00 39.17 2.43
2852 10392 9.959721 ATTAGCCTCTCTATTACAGTTTCAAAA 57.040 29.630 0.00 0.00 0.00 2.44
2860 10400 9.757227 GCCATTATATTAGCCTCTCTATTACAG 57.243 37.037 0.00 0.00 0.00 2.74
2861 10401 9.494055 AGCCATTATATTAGCCTCTCTATTACA 57.506 33.333 0.00 0.00 0.00 2.41
2862 10402 9.974980 GAGCCATTATATTAGCCTCTCTATTAC 57.025 37.037 0.00 0.00 0.00 1.89
2863 10403 9.715119 TGAGCCATTATATTAGCCTCTCTATTA 57.285 33.333 0.00 0.00 0.00 0.98
2864 10404 8.615360 TGAGCCATTATATTAGCCTCTCTATT 57.385 34.615 0.00 0.00 0.00 1.73
2865 10405 8.649591 CATGAGCCATTATATTAGCCTCTCTAT 58.350 37.037 0.00 0.00 0.00 1.98
2866 10406 7.841222 TCATGAGCCATTATATTAGCCTCTCTA 59.159 37.037 0.00 0.00 0.00 2.43
2867 10407 6.671340 TCATGAGCCATTATATTAGCCTCTCT 59.329 38.462 0.00 0.00 0.00 3.10
2868 10408 6.882656 TCATGAGCCATTATATTAGCCTCTC 58.117 40.000 0.00 0.00 0.00 3.20
2869 10409 6.881067 TCATGAGCCATTATATTAGCCTCT 57.119 37.500 0.00 0.00 0.00 3.69
2886 10426 4.252073 AGCTAAACTGTCAAGCTCATGAG 58.748 43.478 18.84 18.84 42.89 2.90
2887 10427 4.277515 AGCTAAACTGTCAAGCTCATGA 57.722 40.909 10.15 0.00 42.89 3.07
2888 10428 5.414360 TCTAGCTAAACTGTCAAGCTCATG 58.586 41.667 17.08 10.76 42.89 3.07
2889 10429 5.667539 TCTAGCTAAACTGTCAAGCTCAT 57.332 39.130 17.08 1.41 42.89 2.90
2890 10430 5.420421 AGATCTAGCTAAACTGTCAAGCTCA 59.580 40.000 17.08 8.52 42.89 4.26
2891 10431 5.901552 AGATCTAGCTAAACTGTCAAGCTC 58.098 41.667 17.08 6.65 42.89 4.09
2893 10433 5.901552 AGAGATCTAGCTAAACTGTCAAGC 58.098 41.667 0.00 6.29 36.48 4.01
2894 10434 9.462174 CATTAGAGATCTAGCTAAACTGTCAAG 57.538 37.037 7.70 0.00 31.10 3.02
2895 10435 9.190317 TCATTAGAGATCTAGCTAAACTGTCAA 57.810 33.333 7.70 0.00 31.10 3.18
2896 10436 8.753497 TCATTAGAGATCTAGCTAAACTGTCA 57.247 34.615 7.70 0.00 31.10 3.58
2970 10510 9.131791 ACCTCGCCAATGAATTACTATAAAAAT 57.868 29.630 0.00 0.00 0.00 1.82
2971 10511 8.514330 ACCTCGCCAATGAATTACTATAAAAA 57.486 30.769 0.00 0.00 0.00 1.94
2972 10512 9.048446 GTACCTCGCCAATGAATTACTATAAAA 57.952 33.333 0.00 0.00 0.00 1.52
2973 10513 8.426489 AGTACCTCGCCAATGAATTACTATAAA 58.574 33.333 0.00 0.00 0.00 1.40
2974 10514 7.959175 AGTACCTCGCCAATGAATTACTATAA 58.041 34.615 0.00 0.00 0.00 0.98
2975 10515 7.534723 AGTACCTCGCCAATGAATTACTATA 57.465 36.000 0.00 0.00 0.00 1.31
2976 10516 6.420913 AGTACCTCGCCAATGAATTACTAT 57.579 37.500 0.00 0.00 0.00 2.12
2977 10517 5.864418 AGTACCTCGCCAATGAATTACTA 57.136 39.130 0.00 0.00 0.00 1.82
2978 10518 4.755266 AGTACCTCGCCAATGAATTACT 57.245 40.909 0.00 0.00 0.00 2.24
2979 10519 5.116882 AGAAGTACCTCGCCAATGAATTAC 58.883 41.667 0.00 0.00 0.00 1.89
2980 10520 5.353394 AGAAGTACCTCGCCAATGAATTA 57.647 39.130 0.00 0.00 0.00 1.40
2981 10521 4.222124 AGAAGTACCTCGCCAATGAATT 57.778 40.909 0.00 0.00 0.00 2.17
2982 10522 3.914426 AGAAGTACCTCGCCAATGAAT 57.086 42.857 0.00 0.00 0.00 2.57
2983 10523 3.695830 AAGAAGTACCTCGCCAATGAA 57.304 42.857 0.00 0.00 0.00 2.57
2984 10524 3.596214 GAAAGAAGTACCTCGCCAATGA 58.404 45.455 0.00 0.00 0.00 2.57
2985 10525 2.348666 CGAAAGAAGTACCTCGCCAATG 59.651 50.000 0.00 0.00 0.00 2.82
2986 10526 2.028385 ACGAAAGAAGTACCTCGCCAAT 60.028 45.455 0.00 0.00 34.70 3.16
2987 10527 1.342174 ACGAAAGAAGTACCTCGCCAA 59.658 47.619 0.00 0.00 34.70 4.52
2988 10528 0.963962 ACGAAAGAAGTACCTCGCCA 59.036 50.000 0.00 0.00 34.70 5.69
2989 10529 2.795117 CTACGAAAGAAGTACCTCGCC 58.205 52.381 0.00 0.00 34.70 5.54
2990 10530 2.183636 GCTACGAAAGAAGTACCTCGC 58.816 52.381 0.00 0.00 34.70 5.03
2991 10531 2.163010 TGGCTACGAAAGAAGTACCTCG 59.837 50.000 0.00 0.00 37.33 4.63
2992 10532 3.863142 TGGCTACGAAAGAAGTACCTC 57.137 47.619 0.00 0.00 0.00 3.85
2993 10533 3.577415 AGTTGGCTACGAAAGAAGTACCT 59.423 43.478 0.00 0.00 0.00 3.08
2994 10534 3.922910 AGTTGGCTACGAAAGAAGTACC 58.077 45.455 0.00 0.00 0.00 3.34
3111 10651 9.292195 CTCTGGGTTAATAAGTTAGTCCAAAAA 57.708 33.333 0.00 0.00 0.00 1.94
3112 10652 7.392393 GCTCTGGGTTAATAAGTTAGTCCAAAA 59.608 37.037 0.00 0.00 0.00 2.44
3113 10653 6.882678 GCTCTGGGTTAATAAGTTAGTCCAAA 59.117 38.462 0.00 0.00 0.00 3.28
3114 10654 6.412214 GCTCTGGGTTAATAAGTTAGTCCAA 58.588 40.000 0.00 0.00 0.00 3.53
3115 10655 5.104652 GGCTCTGGGTTAATAAGTTAGTCCA 60.105 44.000 0.00 0.00 0.00 4.02
3116 10656 5.366460 GGCTCTGGGTTAATAAGTTAGTCC 58.634 45.833 0.00 0.00 0.00 3.85
3117 10657 5.104652 TGGGCTCTGGGTTAATAAGTTAGTC 60.105 44.000 0.00 0.00 0.00 2.59
3118 10658 4.786454 TGGGCTCTGGGTTAATAAGTTAGT 59.214 41.667 0.00 0.00 0.00 2.24
3119 10659 5.104485 ACTGGGCTCTGGGTTAATAAGTTAG 60.104 44.000 0.00 0.00 0.00 2.34
3120 10660 4.786454 ACTGGGCTCTGGGTTAATAAGTTA 59.214 41.667 0.00 0.00 0.00 2.24
3121 10661 3.591977 ACTGGGCTCTGGGTTAATAAGTT 59.408 43.478 0.00 0.00 0.00 2.66
3122 10662 3.054361 CACTGGGCTCTGGGTTAATAAGT 60.054 47.826 0.00 0.00 0.00 2.24
3123 10663 3.545703 CACTGGGCTCTGGGTTAATAAG 58.454 50.000 0.00 0.00 0.00 1.73
3124 10664 2.356741 GCACTGGGCTCTGGGTTAATAA 60.357 50.000 0.00 0.00 40.25 1.40
3125 10665 1.211949 GCACTGGGCTCTGGGTTAATA 59.788 52.381 0.00 0.00 40.25 0.98
3126 10666 0.034089 GCACTGGGCTCTGGGTTAAT 60.034 55.000 0.00 0.00 40.25 1.40
3127 10667 1.378762 GCACTGGGCTCTGGGTTAA 59.621 57.895 0.00 0.00 40.25 2.01
3128 10668 2.602676 GGCACTGGGCTCTGGGTTA 61.603 63.158 0.21 0.00 44.01 2.85
3129 10669 3.971702 GGCACTGGGCTCTGGGTT 61.972 66.667 0.21 0.00 44.01 4.11
3131 10671 4.421515 CTGGCACTGGGCTCTGGG 62.422 72.222 0.21 0.00 44.01 4.45
3132 10672 2.703675 AAACTGGCACTGGGCTCTGG 62.704 60.000 0.21 0.00 44.01 3.86
3133 10673 1.228367 AAACTGGCACTGGGCTCTG 60.228 57.895 0.21 0.00 44.01 3.35
3134 10674 1.073897 GAAACTGGCACTGGGCTCT 59.926 57.895 0.21 0.00 44.01 4.09
3135 10675 1.073897 AGAAACTGGCACTGGGCTC 59.926 57.895 0.21 0.00 44.01 4.70
3136 10676 1.228367 CAGAAACTGGCACTGGGCT 60.228 57.895 0.21 0.00 44.01 5.19
3137 10677 1.109323 AACAGAAACTGGCACTGGGC 61.109 55.000 7.62 0.00 43.74 5.36
3138 10678 1.402787 AAACAGAAACTGGCACTGGG 58.597 50.000 7.62 0.00 35.51 4.45
3139 10679 3.525268 AAAAACAGAAACTGGCACTGG 57.475 42.857 7.62 0.00 35.51 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.